-
1
-
-
0001752768
-
The Cambridge structural database: A quarter of a million crystal structures and rising
-
[All02] Pt 1. 0108-7681 (Print) Journal Article
-
[All02] F. H. Allen. The Cambridge Structural Database: a quarter of a million crystal structures and rising. Acta Crystallogr B, 58(Pt 3 Pt 1):380-8, 2002. 0108-7681 (Print) Journal Article.
-
(2002)
Acta Crystallogr B
, vol.58
, Issue.PART 3
, pp. 380-388
-
-
Allen, F.H.1
-
2
-
-
0347296066
-
Assessing the performance of OMEGA with respect to retrieving bioactive conformations
-
[BGG03]. 1093-3263 (Print) Evaluation Studies Journal Article
-
[BGG03] J. Bostrom, J. R. Greenwood, and J. Gottfries. Assessing the performance of OMEGA with respect to retrieving bioactive conformations. J Mol Graph Model, 21(5):449-62, 2003. 1093-3263 (Print) Evaluation Studies Journal Article.
-
(2003)
J Mol Graph Model
, vol.21
, Issue.5
, pp. 449-462
-
-
Bostrom, J.1
Greenwood, J.R.2
Gottfries, J.3
-
3
-
-
24944493938
-
Toward high-resolution de novo structure prediction for small proteins
-
[BMB05]. 1095-9203 Journal Article
-
[BMB05] P. Bradley, K. M. Misura, and D. Baker. Toward high-resolution de novo structure prediction for small proteins. Science, 309(5742):1868-71, 2005. 1095-9203 Journal Article.
-
(2005)
Science
, vol.309
, Issue.5742
, pp. 1868-1871
-
-
Bradley, P.1
Misura, K.M.2
Baker, D.3
-
4
-
-
0027160197
-
Backbone-dependent rotamer library for proteins-application to side-chain prediction
-
[DK93]. Kw260 Times Cited:335 Cited References Count:30
-
[DK93] R. L. Dunbrack and M. Karplus. Backbone-Dependent Rotamer Library for Proteins-Application to Side-Chain Prediction. Journal of Molecular Biology, 230(2):543-574, 1993. Kw260 Times Cited:335 Cited References Count:30.
-
(1993)
Journal of Molecular Biology
, vol.230
, Issue.2
, pp. 543-574
-
-
Dunbrack, R.L.1
Karplus, M.2
-
5
-
-
0041387567
-
A large scale test of computational protein design: Folding and stability of nine completely redesigned globular proteins
-
[DKC+03]. 721FQ Times Cited:25 Cited References Count:35
-
[DKC+03] G. Dantas, B. Kuhlman, D. Callender, M. Wong, and D. Baker. A large scale test of computational protein design: Folding and stability of nine completely redesigned globular proteins. Journal of Molecular Biology, 332(2):449-460, 2003. 721FQ Times Cited:25 Cited References Count:35.
-
(2003)
Journal of Molecular Biology
, vol.332
, Issue.2
, pp. 449-460
-
-
Dantas, G.1
Kuhlman, B.2
Callender, D.3
Wong, M.4
Baker, D.5
-
6
-
-
0038161052
-
Protein-protein docking with simultaneous optimization of rigid-body displacement and side-chain conformations
-
[GMW+03]. 0022-2836 (Print) Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, P.H.S
-
[GMW+03] J. J. Gray, S. Moughon, C. Wang, O. Schueler-Furman, B. Kuhlman, C. A. Rohl, and D. Baker. Protein-protein docking with simultaneous optimization of rigid-body displacement and side-chain conformations. J Mol Biol, 331(1):281-99, 2003. 0022-2836 (Print) Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, P.H.S.
-
(2003)
J Mol Biol
, vol.331
, Issue.1
, pp. 281-299
-
-
Gray, J.J.1
Moughon, S.2
Wang, C.3
Schueler-Furman, O.4
Kuhlman, B.5
Rohl, C.A.6
Baker, D.7
-
7
-
-
0345306764
-
Design of a novel globular protein fold with atomic-level accuracy
-
[KDI+03]. 745HP Times Cited:77 Cited References Count:36
-
[KDI+03] B. Kuhlman, G. Dantas, G. C. Ireton, G. Varani, B. L. Stoddard, and D. Baker. Design of a novel globular protein fold with atomic-level accuracy. Science, 302(5649):1364-1368, 2003. 745HP Times Cited:77 Cited References Count:36.
-
(2003)
Science
, vol.302
, Issue.5649
, pp. 1364-1368
-
-
Kuhlman, B.1
Dantas, G.2
Ireton, G.C.3
Varani, G.4
Stoddard, B.L.5
Baker, D.6
-
8
-
-
3242879771
-
Computational alanine scanning of proteinprotein interfaces
-
[KKB04]. 1525-8882 (Electronic) Journal Article
-
[KKB04] T. Kortemme, D. E. Kim, and D. Baker. Computational alanine scanning of proteinprotein interfaces. Sci STKE, 2004(219):pl2, 2004. 1525-8882 (Electronic) Journal Article.
-
(2004)
Sci STKE
, vol.2004
, Issue.219
, pp. 12
-
-
Kortemme, T.1
Kim, D.E.2
Baker, D.3
-
9
-
-
0028522365
-
A fast and efficient method to generate biologically relevant conformations
-
[KM94]. 0920-654X (Print) Journal Article
-
[KM94] G. Klebe and T. Mietzner. A fast and efficient method to generate biologically relevant conformations. J Comput Aided Mol Des, 8(5):583-606, 1994. 0920-654X (Print) Journal Article.
-
(1994)
J Comput Aided Mol des
, vol.8
, Issue.5
, pp. 583-606
-
-
Klebe, G.1
Mietzner, T.2
-
10
-
-
0035845509
-
Conversion of monomeric protein L to an obligate dimer by computational protein design
-
[KOK+01]. 472CZ Times Cited:22 Cited References Count:27
-
[KOK+01] B. Kuhlman, J. W. O'Neill, D. E. Kim, K. Y. J. Zhang, and D. Baker. Conversion of monomeric protein L to an obligate dimer by computational protein design. Proceedings of the National Academy of Sciences of the United States of America, 98(19):10687-10691, 2001. 472CZ Times Cited:22 Cited References Count:27.
-
(2001)
Proceedings of the National Academy of Sciences of the United States of America
, vol.98
, Issue.19
, pp. 10687-10691
-
-
Kuhlman, B.1
O'neill, J.W.2
Kim, D.E.3
Zhang, K.Y.J.4
Baker, D.5
-
11
-
-
0028158936
-
Ligand docking to proteins with discrete side-chain flexibility
-
[Lea94]. 0022-2836 (Print) Journal Article Research Support, Non-U.S. Gov't
-
[Lea94] A. R. Leach. Ligand docking to proteins with discrete side-chain flexibility. J Mol Biol, 235(1):345-56, 1994. 0022-2836 (Print) Journal Article Research Support, Non-U.S. Gov't.
-
(1994)
J Mol Biol
, vol.235
, Issue.1
, pp. 345-356
-
-
Leach, A.R.1
-
12
-
-
33750056673
-
ROSETTALIGAND: Protein-small molecule docking with full side-chain flexibility
-
[MB06]. 1097-0134 (Electronic) Comparative Study Journal Article Research Support, Non-U.S. Gov't
-
[MB06] J. Meiler and D. Baker. ROSETTALIGAND: protein-small molecule docking with full side-chain flexibility. Proteins, 65(3):538-48, 2006. 1097-0134 (Electronic) Comparative Study Journal Article Research Support, Non-U.S. Gov't.
-
(2006)
Proteins
, vol.65
, Issue.3
, pp. 538-548
-
-
Meiler, J.1
Baker, D.2
-
13
-
-
0036386165
-
Using neural networks for (13)c NMR chemical shift prediction-comparison with traditional methods
-
[MMWM02]. 1090-7807 (Print) Journal Article
-
[MMWM02] J. Meiler, W. Maier, M. Will, and R. Meusinger. Using neural networks for (13)c NMR chemical shift prediction-comparison with traditional methods. J Magn Reson, 157(2):242-52, 2002. 1090-7807 (Print) Journal Article.
-
(2002)
J Magn Reson
, vol.157
, Issue.2
, pp. 242-252
-
-
Meiler, J.1
Maier, W.2
Will, M.3
Meusinger, R.4
-
15
-
-
84871235524
-
-
[et al.]. ill. ; 26 cm. 1. Preliminaries-2. Solution of Linear Algebraic Equations-3. Interpolation and Extrapolation-4. Integration of Functions-5. Evaluation of Functions-6. Special Functions-7. Random Numbers-8. Sorting-9. Root Finding and Nonlinear Sets of Equations-10. Minimization or Maximization of Functions-11. Eigensystems-12. Fast Fourier Transform-13. Fourier and Spectral Applications-14. Statistical Description of Data-15. Modeling of Data-16. Integration of Ordinary Differential Equations-17. Two Point Boundary Value Problems-18. Integral Equations and Inverse Theory-19. Partial Differential Equations-20. Less-Numerical Algorithms-App. A. Table of Function Declarations-App. B. Utility Routines and Classes-App. C. Converting to Single Precision
-
[et al.]. ill. ; 26 cm. 1. Preliminaries-2. Solution of Linear Algebraic Equations-3. Interpolation and Extrapolation-4. Integration of Functions-5. Evaluation of Functions-6. Special Functions-7. Random Numbers-8. Sorting-9. Root Finding and Nonlinear Sets of Equations-10. Minimization or Maximization of Functions-11. Eigensystems-12. Fast Fourier Transform-13. Fourier and Spectral Applications-14. Statistical Description of Data-15. Modeling of Data-16. Integration of Ordinary Differential Equations-17. Two Point Boundary Value Problems-18. Integral Equations and Inverse Theory-19. Partial Differential Equations-20. Less-Numerical Algorithms-App. A. Table of Function Declarations-App. B. Utility Routines and Classes-App. C. Converting to Single Precision.
-
-
-
-
16
-
-
21644459373
-
Progress in protein-protein docking: Atomic resolution predictions in the CAPRI experiment using Rosetta Dock with an improved treatment of side-chain flexibility
-
[SFWB05]. 941YB Times Cited:1 Cited References Count:34
-
[SFWB05] O. Schueler-Furman, C. Wang, and D. Baker. Progress in protein-protein docking: Atomic resolution predictions in the CAPRI experiment using RosettaDock with an improved treatment of side-chain flexibility. Proteins-Structure Function and Bioinformatics, 60(2):187-194, 2005. 941YB Times Cited:1 Cited References Count:34.
-
(2005)
Proteins-Structure Function and Bioinformatics
, vol.60
, Issue.2
, pp. 187-194
-
-
Schueler-Furman, O.1
Wang, C.2
Baker, D.3
-
17
-
-
2542530042
-
The PDB bind database: Collection of binding affinities for protein-ligand complexes with known three-dimensional structures
-
[WFLW04]. 0022-2623 (Print) Journal Article Research Support, Non-U.S. Gov't
-
[WFLW04] R. Wang, X. Fang, Y. Lu, and S. Wang. The PDBbind database: collection of binding affinities for protein-ligand complexes with known three-dimensional structures. J Med Chem, 47(12):2977-80, 2004. 0022-2623 (Print) Journal Article Research Support, Non-U.S. Gov't.
-
(2004)
J Med Chem
, vol.47
, Issue.12
, pp. 2977-2980
-
-
Wang, R.1
Fang, X.2
Lu, Y.3
Wang, S.4
-
18
-
-
2942532422
-
Development and testing of a general amber force field
-
[WWC+04]. 0192-8651 (Print) Journal Article Research Support, U.S. Gov't, P.H.S
-
[WWC+04] J. Wang, R. M. Wolf, J. W. Caldwell, P. A. Kollman, and D. A. Case. Development and testing of a general amber force field. J Comput Chem, 25(9):1157-74, 2004. 0192-8651 (Print) Journal Article Research Support, U.S. Gov't, P.H.S.
-
(2004)
J Comput Chem
, vol.25
, Issue.9
, pp. 1157-1174
-
-
Wang, J.1
Wolf, R.M.2
Caldwell, J.W.3
Kollman, P.A.4
Case, D.A.5
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