Transcriptomics and biochemical profiling: Current dynamics in elucidating the potential attributes of olive

Current Issues in Molecular Biology

Volumn 21, Issue , 2017, Pages 73-98

  Shah, Zahid Hussain ^a   Hamooh, Bahget T ^a   Daur, Ihsanullah ^a   Rehman, Hafiz Mamoon ^b   Alghabari, Fahad ^a  

^a KING ABDULAZIZ UNIVERSITY   (Saudi Arabia)

^b Chonnam National University   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

CAFFEIC ACID; CATECHOL OXIDASE; COMSELOGOSIDE; FLAVANOID; HOMOVANILLIC ACID; LUTEOLIN 7 GLUCOSIDE; PARA COUMARIC ACID; PEROXIDASE; PHENOL DERIVATIVE; PHLORETIC ACID; POLYUNSATURATED FATTY ACID; QUERCETIN; RUTOSIDE; TRIACYLGLYCEROL; TYROSOL; UNCLASSIFIED DRUG; UVAOL; VANILLIC ACID; VIRGIN OLIVE OIL; ENZYME; OLIVE OIL; PLANT PROTEIN;

ABIOTIC STRESS; ARTICLE; BIOSYNTHESIS; DROUGHT STRESS; GENE EXPRESSION PROFILING; GENETIC LINKAGE; GENETIC VARIABILITY; GENOTYPE; LIPID OXIDATION; METABOLOMICS; MICROARRAY ANALYSIS; MOLECULAR DYNAMICS; NONHUMAN; OLIVE TREE; PHENOTYPE; SALINITY; TRANSCRIPTOMICS; GENE EXPRESSION REGULATION; GENETICS; METABOLISM;

ENZYMES; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, PLANT; OLEA; OLIVE OIL; PHENOLS; PLANT PROTEINS; SALINITY;

EID: 85001044627     PISSN: 14673037     EISSN: None     Source Type: Journal    
DOI: 10.21775/cimb.021.073     Document Type: Article

References (220)

1. Alagna, F., D’Agostino, N., Torchia, L. (2009). Comparative 454 pyrosequencing of transcripts from two olive genotypes during fruit development, BMC Genomics 10, 399.
2. Andersson, MX., Goksor, M., Sandelius, AS, (2007). Optical manipulation reveals strong attracting forces at membrane contact sites between endoplasmic reticulum and chloroplasts. J. Biol. Chem. 282, 1170-1174
3. Angerosa, F. (2002). Influence of volatile compounds on virgin olive oil quality evaluated by analytical approaches and sensor panels. Eur. J. Lipid Sci. Tech. 104(9-10), 639-660.
4. Artajo, L. S., Romero, M. P., Tovar, M. J., Motilva, M. J. (2006b). Effect of irrigation applied to olive trees (Olea europaea L.) on phenolic compound transfer during olive oil extraction. Eur. J. Lipid Sci. Tech. 108, 19-27.
5. Ascencio-Ibanez, JT., Sozzani, R., Lee, TJ., Chu, TM., Wolfinger, RD., Cella, R., Hanley-Bowdoin, L, (2008). Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection. Plant Physiol. 148, 436-454.
6. Badenes, M. L., and Byrne, D. H. (2011). Fruit Breeding. New York, NY., Springer Science +Business Media.
7. Baldi, P., Wolters, P. J., Komjanc, M., Viola, R., Velasco, R., and Salvi, S. (2013). Genetic and physical characterisation of the locus controlling columnar habit in apple (Malus × domestica Borkh.). Mol. Breed. 31, 429-440
8. Banilas, G., and Hatzopoulos, P. (2009). Developmental perplexity of oil biosynthesis gene expression in olive. In: Berti, L. Maury, J. eds. Advances in olive resources. Kerala, India: Transworld Research Network, 1-22.
9. Banilas, G., Karampelias, M., Makariti, I., Kourti, A., Hatzopoulos, P. (2011). The olive DGAT2 gene is developmentally regulated and shares overlapping but distinct expression patterns with DGAT1. J. Exp. Bot. 62 (2), 521-32.
10. Baptista, A., and Biswas, P. (2010). Quality differentiation as a strategy for the viability of traditional olive farming in trás-os-montes region, in International EAAE-SYAL Seminar - Spatial Dynamics in Agri-food Systems (Parma).
11. Barakat, A., Di Loreto, D. S., Zhang, Y., Smith, C., Baier, K., Powell, W. A., et al. (2009) Comparison of the transcriptomes of American chestnut (Castanea dentata) and Chinese chestnut (Castanea mollissima) in response to the chestnut blight infection. Bmc. Plant Biol. 9.
12. Barthélémy, D., and Caraglio, Y. (2007). Plant architecture: a dynamic, multilevel and comprehensive approach to plant form, structure and ontogeny. Ann. Bot. 99, 375-407
13. Bazakos, C., Manioudaki, M. E., Therios, I., Voyiatzis, D., Kafetzopoulos, D., Awada, T., et al. (2012). Comparative transcriptome analysis of two olive cultivars in response to NaCl-stress. PloS one. 7, e42931.
14. Beauchamp, G. K., Keast, R. S., Morel, D., Lin, J., Pika, J., Han, Q., Lee, C. H., Smith, A. B., Breslin, P. A. (2005), Phytochemistry, ibuprofen-like activity in extra-virgin olive oil. Nature 437(7055), 45-46
15. Beckman, C. H. (2000). Phenolic-storing cells, keys to programmed cell death and periderm formation in wilt disease resistance and in general defence responses in plants. Physiol. Mol. Plant Path. 57, 101-110.
16. Benlloch, M., Arboleda, F., Barranco, D. (1991). Response of Young Olive Trees to Sodium and Boron Excess in Irrigation Water. Boron 26,867-870.
17. Besnard, G., Khadari, B., Villemur, P. et al. (2000) Cytoplasmic male sterility in the olive (Olea europaea L.). Theor. Appl. Genet., 100, 1018-1024.
18. Bianco, L., Alagna, F., Baldoni, L., Finnie, C., Svensson, B., Perrotta, G. (2013). Proteome regulation during Olea europaea fruit development. PLoS one 10, 1371.
19. Bonnet, E., Tatari, M., Joshi, A., Michoel, T., Marchal, K., et al. (2010) Module network inference from a cancer gene expression data set identifies microRNA regulated modules. PloS one 5, e10162.
20. Boskou, G., Salta, F. N., Chrysostomou, S., Mylona, A., Chiou, A., Andrikopoulos, N. K. (2006). Antioxidant capacity and phenolic profile of table olives from the Greek market. Food Chem. 94, 558-564.
21. Busov, V. B., Brunner, A. M., and Strauss, S. H. (2008). Genes for control of plant stature and form. New Phytol. 177, 589-607.
22. Bouaziz, M., Jemai, H., Khabou, W., Sayadi, S. (2010) Oil content, phenolic profiling and antioxidant potential of Tunisian olive drupes. J. Sci. Food Agric. 90, 1750-1758
23. Carpentier, S. C., Panis, B., Vertommen, A., Swennen, R., Sergean, T K., et al. (2008) Proteome analysis of non-model plants: a challenging but powerful approach. Mass Spectrom. Rev. 27, 354-377.
24. Carrasco-Pancorbo, A., Cerretani, L., Bendini, A., Segura-Carretero, A., Gallina-Toschi, T., Fernández-Gutiérrez A. (2005) Analytical determination of polyphenols in olive oils. J. Sep. Sci. 28, 837-858
25. Chapelle, A., Morreel, K., Vanholme, R., Le-Bris, P., Morin, H., Lapierre, C., Boerjan, W., Jouanin, L., Demont-Caulet, N. (2012). Impact of the absence of stem-specific β-glucosidases on lignin and monolignols. Plant Physiol. 160:1204-1217.
26. Chartzoulakis, K. S. (2005). Salinity and olive: Growth, salt tolerance, photosynthesis and yield. Agr. Water Manage. 78,108-121
27. Chauvin, A., Lenglet, A., Wolfender, J. L. and Farmer, E. E. (2016). Paired Hierarchical Organization of 13-Lipoxygenases in Arabidopsis. Plants 5 (16): 1-13.
28. Che, P., Love, T. M., Frame, B. R., Wang, K., Carriquiry, A. L., Howell, S. H. (2006). Gene expression patterns during somatic embryo development and germination in maize Hi II callus cultures. Plant Mol. Biol. 62 (1-2), 1-14
29. Chen, W., Provart, N. J., Glazebrook, J., Katagiri, F., Chang, H. S., et al. (2002). Expression Profile Matrix of Arabidopsis Transcription Factor Genes Suggests Their Putative Functions in Response to Environmental Stresses. Society, 14, 559-574.
30. Cloonan, N., Forrest, A. R. R., Kolle, G., Gardiner, B. B. A., Faulkner, G. J., Brown, M. K., et al. (2008). Stem cell transcriptome profiling via massive-scale mRNA sequencing. Nat. Methods 5, 613-619.
31. Clodoveo, M. L., Camposeo, S., De Gennaro, B., Pascuzzi, S., and Roselli, L. (2014a). In the ancient world, virgin olive oil was called ‘‘liquid gold” by Homer and ‘‘the great healer” by Hippocrates. Why has this mythic image been forgotten? Food Research International 62, 1062-1068.
32. Clodoveo, M. L., Hachicha Hbaieb, R., Kotti, F., Mugnozza, G. S., and Gargouri, M. (2014b). Mechanical strategies to increase nutritional and sensory quality of virgin olive oil by modulating the endogenous enzyme activities. Comp. Rev. Food Sci. Food Safety 13, 135-154.
33. Cohen, D., Bogeat-Triboulot, M. B., Tisserant, E., Balzergue, S., Martin-Magniette, M. L., et al. (2010). Comparative transcriptomics of drought responses in Populus: a metaanalysis of genome-wide expression profiling in mature leaves and root apices across two genotypes. BMC Genomics 11, 630.
34. Conde, C., Silva, P., Agasse, A., Lemoine, R., Delro, T S., et al. (2007) Utilization and transport of mannitol in Olea europaea and implications for salt stress tolerance. Plant Cell Physiol. 48, 42-53.
35. Colomer, R., Mene´ndez, J. A. (2006). Mediterranean diet, olive oil and cancer. Clin. Transl. Oncol. 8, 15-21.
36. Conde, C., Delrot, S., Geros, H. (2008). Physiological, biochemical and molecular changes occurring during olive development and ripening. J. Plant Physiol. 165, 1545-1562
37. Connor, D. J., Fereres, E. (2005). The physiology of adaptation and yield expression in olive. Hort. Rev. 34, 155-229.
38. Connor, D. J., Centeno, A., and Gomez-Del-Campo, M. (2009). Yield determination in olive hedgerow orchards. II. Analysis of radiation and fruiting profiles. Crop Pasture Sci. 60, 443-452.
39. Costanzo, E., Trehin, C., Vandenbussche, M. (2014). The role of WOX genes in flower development. Ann. Bot. 114, 1545-1553
40. Costes, E., Gion, J. -M. (2015). Chapter five - Genetics and genomics of tree architecture in Advances in Botanical Research, eds P. Christophe and A. -B. Anne-Françoise (London: Academic Press), 157-200.
41. Covas, M. I., Ruiz-Gutiérrez, V., De la Torre, R., Kafatos, A., Lamuela-Raventós, R. M., Osada, J., Owen, R. W., Visioli, F. (2006). Minor components of olive oil: Evidence to date of health benefits in humans. Nutri. Rev. 64, 20-30.
42. Cresti, M., Ciampolini, F., Tattini, M., Cimato, A. (1994). Effect of salinity on productivity and oil quality of olive (Olea europaea L.) plants. Adv. Hortic. Sci. 8, 211-214.
43. Cunnane, S. (2003). Problems with essential fatty acids: time for a new paradigm. Prog. Lipid Res. 42, 544-568.
44. Dabbou, S., Issaoui, M., Esposto, S., Sifi, S., Taticchi, A., Servili, M., Montedoro, G. F., Hammami, M. (2009). Cultivar and growing area effects on minor compounds of olive oil from autochthonous and European introduced cultivars in Tunisia. J. Sci. Food Agric. 89, 1314-1325.
45. Damtoft, S., Franzyk, H., Jensen, S. R. (1995) Biosynthesis of secoiridoids in Fontanesia. Phytochem. 38(3), 615-621.
46. Damtoft, S., Franzyk, H., Jensen, SR. (1995). Biosynthesis of iridoids in Syringa and Fraxinus: carbocyclic iridoid precursors. Phytochem. 40(3), 785-792.
47. De la Rosa, R., Angiolillo, A., Guerrero, M., Pellegrini, M., Rallo, L., Besnard, G., Bervillé, A., Martin, A., Baldoni, L. (2003). A first linkage map of olive (Olea europaea L.) cultivars using RAPD, AFLP, RFLP and SSR markers. Theor. Appl. Genet. 106, 1273-1282.
48. De La Torre-Carbot, K., Jauregui, O., Gimeno, E., Castellote, A. I., Lamuela-Raventós, R. M., López-Sabater, M. C. (2005). Characterisation and quantification of phenolic compounds in olive oils by solid phase extraction, HPLC-DAD, and HPLC-MS/MS. J. Agric. Food Chem. 53, 4331-4340.
49. De Marcos, A., Triviño, M., Pérez-Bueno, M. L., et al. (2015). Transcriptional profiles of Arabidopsis stomataless mutants reveal developmental and physiological features of life in the absence of stomata. Front. Plant Sci. 6, 456.
50. De Ollas, C., Arbona, V., Gómez-Cadenas, A. (2015). Jasmonoyl isoleucine accumulation is needed for abscisic acid build-up in roots of Arabidopsis under water stress conditions. Plant Cell Environ. 38, 2157-2170.
51. Deyholos, M. K. (2010). Making the most of drought and salinity transcriptomics. Plant Cell Environ. 33, 648-654.
52. Demiral, M. A. (2005). Comparative response of two olive (Olea europaea L.) cultivars to salinity. Turk. J. Agric. For. 29, 267-274
53. Díaz-Riquelme, J., Grimplet, J., Martinez-Zapater, J. M., and Carmona, M. J. (2012). Transcriptome variation along bud development in grapevine (Vitis vinifera L.). BMC Plant Biol. 12, 181.
54. Di Baccio, D., Galla, G., Bracci, T., Andreucci, A., Barcaccia, G., Tognetti, R., et al. (2011). Transcriptome analyses of Populus × euramericana clone I-214 leaves exposed to excess zinc. Tree Physiol. 31, 1293-1308.
55. Dichio, B., Xiloyannis Angelopoulos, K., Nuzzo, V., Bufo, S. A., Celano, G. (2003). Drought-induced variations of water relations parameters in Olea europaea. Plant Soil 257, 381-389.
56. Dierkes, G., Krieger, S., Dück, R., Bongartz, A., Schmitz, O. J., Hayen, H. (2012) Highperformance liquid chromatography-mass spectrometry profiling of phenolic compounds for evaluation of olive oil bitterness and pungency. J. Agric. Food Chem. 60, 7597-7606.
57. Donaire, L., Pedrola, L., De la Rosa, R., Llave, C. (2011). High-throughput sequencing of RNA silencing-associated small RNAs in olive (Olea europaea L.), PLoS ONE, 6, e27916.
58. Doveri, S., Donal, M., Lee, D. (2006). Non concordance between genetics profiles of olive oil and fruit: a cautionary note to the use of DNA markers for provenance testing. J. Agric. Food Chem. 54, 9221-9226.
59. Doveri, S., Baldoni, L. (2007). Genome mapping and molecular breeding in plants. Volume 4: Olive fruits and Nuts: 253-264. Springer - Verlag, Berlin Heidelberg.
60. Dubois, V., Breton, S., Linder, M., Fanni, M., Parmentier, M. (2007). Fatty acid profiles of vegetable oils with regard to their nutritional potential. Eur. J. Lipid Sci. Tech. 109, 710-732
61. Elloumi, J., Ben-Ayed, R., Aifa, S. (2012). An overview of olive oil biomolecules. Curr. Biotechnol. 1, 115-124.
62. Esteve, C., D’Amato, A., Marina, M. L., García, M. C., Citterio, A., et al. (2012). Identification of olive (Olea europaea) seed and pulp proteins by nLC-MS/MS via combinatorial peptide ligand libraries. J. Proteomics 75, 2396-2403
63. Fan, J., Guo, X. Y., Li, L., Huang, F., Sun, W. X., Li, Y., et al. (2015). Infection of Ustilaginoidea virens intercepts rice seed formation but activates grain-filling-related genes. J. Int. Plant Biol. 57, 577-590.
64. Fernie, A., Stitt, M. (2012). On the discordance of metabolomics with proteomics and transcriptomics: coping with increasing complexity in logic, chemistry, andnetwork interactions. Plant Physiol. 158, 1139-1145.
65. Franceschi, V. R., Krokene, P., Christiansen, E., Krekling, T. (2005) Anatomical and chemical defenses of conifer bark against bark beetles and other pests. New Phytol. 167(2), 353-375
66. Fregapane, G., Salvador, M., D. (2013). Production of superior quality extra virgin olive oil modulating the content and profile of its minor components. Food Res. Int. 6, 35-40.
67. Fu, S., Segura-Carretero, A., Arráez-Román, D., Menéndez, J. A., De la Torre, A., Fernández-Gutiérrez, A. (2009a). Tentative characterisation of novel phenolic compounds in extra virgin olive oils by rapid-resolution liquid chromatography coupled with mass spectrometry. J. Agric. Food Chem. 57, 11140-11147
68. Galla, G., Barcaccia, G., Ramin, A A., Collani, S., Alagn, A F., Baldon, I L., Cultrera, N. G., Martinelli, F., Sebastiani, L., Tonutti, P. (2009) Computational annotation of genes differentially expressed along olive fruit development. BMC Plant Biol. 9, 128.
69. Gajhede, M. (2001). Plant peroxidases: Substrate complexes with mechanistic implications. Biochem. Soc. Trans. 29(Pt. 2), 91-98.
70. Garcia, J. M., Gutierrez, F., Barrera, M. J., Albi, M. A. (1996a). Storage of mill olives on an industrial scale. J. Agric. Food Chem. 44, 590-593.
71. García-López, M. C., Vidoy, I., Jiménez-Ruiz, J., Muñoz-Mérida, A., Fernández-Ocaña, A., De La Rosa, R., et al. (2014). Genetic changes involved in the juvenile-to-adult transition in the shoot apex of Olea europaea L. occurs years before the first flowering. Tree Genet. Genomes 10, 585-603.
72. Garcia-Rodriguez, R., Romero-Segura, C., Sanz, C., Sanchez-Ortiz, A., Perez, A. (2011). Role of polyphenol oxidase and peroxidase in shaping the phenolic profile of virgin olive oil. Food Res. Int. 44, 265-635.
73. Gil-Amado, J. A., Gomez-Jimenez, M. C. (2013). Transcriptome analysis of mature fruit abscission control in olive. Plant Cell Physiol. 54(2),244-269.
74. Giovannoni, J. (2004). Genetic regulation of fruit development and ripening. Plant Cell 16, 170-180.
75. Gomez-Rico, A., Moriana Salvador, M. D., Perez, A., Olmedilla, D., Ribas, N., Fregapane, F. G., 2007. Influence of different irrigation strategies in a traditional Cornicabracv. olive orchard of virgin olive oil composition and quality. Food Chem. 100, 568-578.
76. Gomez-Rico, A., Fregapane, G., and Salvador, M. D. (2008). Effect of cultivar and ripening on minor components in Spanish olive fruits and their corresponding virgin olive oils. Food Res. Int. 41, 433-440.
77. Gomez-Jimenez, M. C., Paredes, M. A., Gallardo, M., Fernandez-Garcia, N., Olmos, E., Sanchez-Calle, I. M. (2010). Tissue-specific expression of olive S-adenosyl methionine decarboxylase and spermidine synthase genes and polyamine metabolism during flower opening and early fruit development. Planta 232(3), 629-647.
78. Gomez-Jimenez, M. C., Paredes, M. A., Gallardo, M., Sanchez-Calle, I. M. (2010). Mature fruit abscission is associated with up-regulation of polyamine metabolism in the olive abscission zone. J. Plant Physiol. 167(17), 1432-1441.
79. Gómez-Rico, A., Inarejos-García, A. M., Desamparados Salvador, M., Fregapane, G. (2009). Effect of malaxation conditions on phenol and volatile profiles in olive paste and the corresponding virgin olive oils (Olea europaea L. Cv. Cornicabra). J. Agric. Food Chem. 57, 3578-3595
80. Gong, Q., Li, P., Ma, S., Indu Rupassara, S., Bohnert, H. J. (2005). Salinity stress adaptation competence in the extremophile Thellungiella halophila in comparison with its relative Arabidopsis thaliana. Plant J. 44, 826-839.
81. González-Cabanelas, D., Wright, L. P., Paetz, C., Onkokesung, N., Gershenzon, J., Rodríguez-Concepción, M., Phillips, M. A. (2015). The diversion of 2-C-methyl-d-erythritol-2,4-cyclodiphosphate from the 2-C-methyl-d-erythritol 4-phosphate pathway to hemiterpene glycosides mediates stress responses in Arabidopsis thaliana. Plant J. 82, 122-137.
82. González-Plaza, JJ., Ortiz-Martín, I., Muñoz-Mérida, A., García-López, C., Sánchez-Sevilla, J. F., Luque, F., Trelles, O., Bejarano, E. R., De La Rosa, R., Valpuesta, V., Beuzón, C. R. (2016). Transcriptomic Analysis Using Olive Varieties and Breeding Progenies Identifies Candidate Genes Involved in Plant Architecture. Front. Plant Sci. 7,240.
83. Goulas, V., Manganaris, G. A. (2012). Towards an Efficient Protocol for the Determination of Triterpenic Acids in Olive Fruit: A Comparative Study of Drying and Extraction Methods. Phytochem. Anal. 23(5), 444-449.
84. Gucci, R., Lombardini, L., Tattini, M. (1997). Analysis of leaf water relations in leaves of two olive (Olea europaea) cultivars differing in tolerance to salinity. Tree Physiol. 17,13-21.
85. Hammami, S. B. M., De La Rosa, R., Sghaier-Hammami, B., Leon, L., and Rapoport, H. F. (2012). Reliable and relevant qualitative descriptors for evaluating complex architectural traits in olive progenies. Sci. Hortic. 143, 157-166.
86. Hanan, J., Birch, C. J., Vos, J. (2003). Modelling the architecture of plants: some concepts and potential applications, in Versatile Maize - Golden Opportunities: 5th Australian Maize Conference Proceedings (Toowoomba, QLD), 100-111.
87. Haouane, H., El Bakkali, A., Moukhli, A., Tollon, C., Santoni, S., Oukabli, A., et al. (2011). Genetic structure and core collection of the World Olive Germplasm Bank of Marrakech: towards the optimised management and use of Mediterranean olive genetic resources. Genetica 139, 1083-1094.
88. He, X., Hou, X., Shen, Y., Huang Z. (2011). Ta SRG, a wheat transcription factor, significantly affects salt tolerance in transgenic rice and Arabidopsis. FEBS letters 585, 1231-1237.
89. Hollender, C. A., and Dardick, C. (2015). Molecular basis of angiosperm tree architecture. New Phytol. 206, 541-556
90. Ihmels, J., Levy, R., Barkai, N. (2004). Principles of transcriptional control in the metabolic network of Saccharomyces cerevisiae. Nat. Biotechnol. 22, 86-92.
91. Jerman, T., Trebše, P., Mozeticˇ Vodopivec, B. (2010). Ultrasound-assisted solid liquid extraction (USLE) of olive fruit (Olea europaea) phenolic compounds. Food Chem. 123(123), 175-182.
92. Kanakis, P., Termentzi, A., Michel, T., Gikas, E., Halabalaki, M., Skaltsounis, A. -L. (2013). From olive drupes to olive oil. An HPLC-orbitrap-based qualitative and quantitative exploration of olive key metabolites. Planta Med. 79, 1576-1587
93. Keunen, E., Jozefczak, M., Remans, T., Vangronsveld, J., Cuypers, A. (2013). Alternative respiration as a primary defence during cadmium induced mitochondrial oxidative challenge in. Arabidopsis thaliana. Environ. Exp. Bot. 91, 63-73.
94. Kim, K. C., Fan, B., and Chen, Z. (2006). Pathogen-induced Arabidopsis WRKY7 is a transcriptional repressor and enhances plant susceptibility toPseudomonas syringae. Plant Physiol. 142 1180-1192.
95. Kim, S., Yamaoka, Y., Ono, H., Kim, H., Shim, D., Maeshima, M., Martinoia, E., Cahoon, E. B., Nishida, I., Lee, Y. (2013). AtABCA9 transporter supplies fatty acids for lipid synthesis to the endoplasmic reticulum. PNAS 110, 773-778.
96. Kim, S. H., Son, G. H., Bhattacharjee, S., Kim, H. J., Nam, J. C., Nguyen, P. D., Hong, J. C., Gassmann, W. (2014). The Arabidopsis immune adaptor SRFR1 interacts with TCP transcription factors that redundantly contribute to effector-triggered immunity Plant J. 78, pp. 978-989.
97. Kim, Y. S., Sakuraba, Y., Han, S-H, Yoo, S-C., Paek, N-C. (2013). Mutation of the Arabidopsis NAC016 transcription factor delays leaf senescence. Plant Cell Physiol. 54, 1660-1672.
98. Kiritsakis, A. K., Nanos, G. D., Polymen-oupoulos, Z., Thomai, T., and Sfakiotakis, E. Y. (1998). Effect of fruit storage conditions on olive oil quality. J. Am. Oil Chem. Soc. 75, 721-724.
99. Klein, I., Ben-Tal, Y., Lavee, S., De Malach, Y., David, I. (1994) Saline irrigation of cv. Manzanillo and Uovo di Piccione trees. Acta Hort (ISHS). 356, 176-180.
100. Konno, K., Hirayama, C., Yasui, H., Nakamura, M. (1999). Enzymatic activation of oleuropein: a protein crosslinker used as a chemical defense in the privet tree. Proc. Natl. Acad. Sci. 96(16), 9159-9164.
101. Kubo, I., Matsumoto, A., Takase, I. (1985). A multichemical defense mechanism of bitter olive Olea europaea (Oleaceae). Is oleuropein a phytoalexin precursor. J. Chem. Ecol. 11,251-263
102. Kwon, C. S., Chen, C., and Wagner, D. (2005). WUSCHEL is a primary target for transcriptional regulation by SPLAYED in dynamic control of stem cell fate in Arabidopsis. Genes Dev. 19, 992-1003.
103. Lazzez, A., Vichi, S., Grati Kammoun, N., Arous, M. N., Khlif, M., Romero, A., et al. (2011). A four year study to determine the optimal harvesting period for Tunisian Chemlali olives. Eur. J. Lipid Sci. Tech. 113,796-807.
104. Lavee, S., Avidan, B., and Meni, Y. (2003). ‘Askal’, a new high-performing oil variety for intensive and super-intensive olive orchards. Olivae 97, 7.
105. Leyva-Perez, M. D., Valverde-Corredo, R A., Valderrama, R., Jimenez-Ruiz, J., Munoz-Merida, A., Trelles, O., et al. (2015). Early and delayed long-term transcriptional changes and short-term transient responses during cold acclimation in olive leaves. DNA Res. 22, 1-11
106. Li, JF., Norville, J. E., Aach, J., McCormack, M., Zhang, D., Bush, J., Church, G. M., Sheen, J. (2013). Multiplex and homologous recombination-mediated genome editing inArabidopsis and Nicotiana benthamiana using guide RNA and Cas9. Nat. Biotechnol. 31,688-691
107. Llorente-Cortes, V., Estruch, R., Mena, M. P., Ros, E., Gonzalez, M. A. M., Fito, M., Lamuela-Raventos, R. M., Badimon, L. (2010). Effect of Mediterranean diet onthe expression of proatherogenic genes in a population at high cardiovascularrisk. Atherosclerosis 208, 442-450.
108. López, O. J. M., Innocenti, M., Ieri, F., Giaccherini, C., Romani, A., Mulinacci, N. (2008). HPLC/DAD/ESI/MS detection of lignans from Spanish and Italian Olea europaea L. fruits. J. Food Comp. Anal. 21, 62-70.
109. Loreto, F., Centritto, M., Chartzoulakis, K. (2003) Photosynthetic limitations in olive cultivars with different sensitivityto salt stress. Plant Cell Environ. 26, 595-601.
110. Loureiro, J., Rodriguez, E., Costa, A., Santos, C. (2007). Nuclear DNA content estimations in wild olive (Olea europaea L. ssp. europaea var. sylvestris Brot.) and Portuguese cultivars of O. europaea using flow cytometry. Genet. Resour. Crop Evol. 54:21-25.
111. Loumou, A., Giourga, C. (2003). Olive groves: ‘The life and identity of the Mediterranean’, Agric. Hum. Values 20, 87-95.
112. Lozano-Sánchez, J., Giambanelli, E., Quirantes-Piné, R., Cerretani, L., Bendini, A., Segura-Carretero, A., Fernández-Gutiérrez, A. (2011). Wastes generated during the storage of extra virgin olive oil as a natural source of phenolic compounds. J. Agric. Food Chem. 59, 11491-11500
113. Lung, S. C., Weselake, RJ. (2006). Diacylglycerol acyltransferase: a key mediator of plant triacylglycerol synthesis. Lipids 41, 1073-1088
114. Mabuchi, A., Soga, K., Wakabayashi, K., Hoson, T. (2016). Phenotypic screening of Arabidopsis T-DNA insertion lines for cell wall mechanical properties revealed ANTHOCYANINLESS2, a cell wall-related gene. J. Plant Physiol. 191, 29-35.
115. Malik, N. S. A., Bradford, J. M. (2008). Recovery and stability of oleuropein and other phenolic compounds during extraction and processing of olive (Olea europaea L.) leaves. J. Food Agric. Env. 6, 8-13.
116. Mane, S., Robinet, C., Ulanov, A., Schafleitner, R., Tincopa, L., et al. (2008). Molecular and physiological adaptation to prolonged drought stress in the leaves of two Andean potato genotypes. Funct. Plant Biol. 35, 669-688.
117. Margulies, M., Egholm, M., Altman, W. E., Attiya, S., Bader, J. S., Bemben, L. A., et al. (2005). Genome sequencing in microfabricated highdensity picolitre reactors. Nature 437, 376-380.
118. Mariotti, R., Cultrera, N. G. M., Munoz-Diez, C., Baldoni, L., Rubini, A. (2010). Identification of new polymorphic regions and differentiation of cultivated olives (Olea europaea L.) through platome sequence comparison. BMC Plant Biol. 10.
119. Marioni, J. C., Mason, C. E., Mane, S. M., Stephens, M., Gilad, Y., RNA-seq, (2008). An assessment of technical reproducibility and comparison with gene expression arrays. Genome Res. 18, 1509-1517.
120. Martinelli, F., Basile, B., Morelli, G., d’Andria, R., Tonutti, P. (2012). Effects of irrigationon fruit ripening behavior and metabolic changes in olive. Sci. Hortic. 144, 201-207.
121. Martinelli, F., Tonutti, P., (2012). Flavonoid metabolism and gene expression in devel-oping olive (Olea europaea L.) fruit. Plant Biosyst. 146 (S1), 164-170.
122. Marqez-Ruiz, G., Garces, R., Leon-Camacho, M., Mancha, M. (1990). Thermoxidativ stability of triacylglcerols from mutant sunflower seeds. J. Am. Oil Chem. Soc. 76, 1169-1174
123. Mataix J., Barbancho F. J. (2006). Olive oil in Mediterranean food. Olive Oil and Health. CAB International, Oxfordshire
124. McSteen, P., and Leyser, O. (2005). Shoot branching. Annu. Rev. Plant Biol. 56, 353-374
125. Melgar, J. C., Mohamed, Y., Serrano, N., García-Galavís, P. A., Navarro, C., et al. (2009) Long term responses of olive trees to salinity. Agric. Water Manag. 9, 1105-1113.
126. Meyer, K. D., Saletore, Y., Zumbo, P., Elemento, O., Mason, C. E., Jaffrey, S. R. (2012). Comprehensive analysis of mRNA methylation reveals enrichment in 3′ UTRs and near stop codons. Cell 149, 1635-1646.
127. Michoel, T., De Smet R., Joshi, A., Van de Peer, Y., Marchal, K. (2009). Comparative analysis of module-based versus direct methods for reverse-engineering transcriptional regulatory networks. BMC Syst. Biol. 3, 49.
128. Michoel, T., De Smet, R., Joshi, A., Marchal, K., Van de Peer, Y. (2009). Reverse engineering transcriptional modules from gene expression data. Ann. NY Acad. Sci. 1158, 36-43.
129. Mira, M. M., Wally, S. D. O., Elhiti, M., ElShanshory, A., Reddy, S. D., Hill, H. R. and Stasolla, C. (2016). Jasmonic acid is a downstream component in the modulation of somatic embryogenesis by Arabidopsis Class 2 phytoglobin. J. Exp. Bot. 1-16
130. Montillet, L., Leonhardt, N., Mondy, S., Tranchimand, S., Rumeau, D., Boudsocq, M., et al. (2013), An abscisic Acid-independent oxylipin pathway controls stomatal closure and immune defense in Arabidopsis. PLoS Biol. 11, e1001513
131. Moriya, S., Okada, K., Haji, T., Yamamoto, T., and Abe, K. (2012). Fine mapping of Co, a gene controlling columnar growth habit located on apple (Malus × domestica Borkh.) linkage group 10. Plant Breed. 131, 641-647.
132. Morello, J. R., Romero, M. P., and Motiva, M. J. (2004). Effect of maturation process of the olive fruit on the phenolic fraction of drupes and oils from Arbequina, Farga and Morrut cultivars. J. Agric. Food Chem. 52, 6002-6009
133. Mortazavi, A., Williams, B. A., Mccue, K., Schaeffer, L., Wold, B. (2008). Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nat. Methods 5, 621-628.
134. Mu, J., Tan, H., Zheng, Q., Fu, F., Liang, Y., Zhang, J., et al. (2008). LEAFY COTYLEDON1 is a key regulator of fatty acid biosynthesis in Arabidopsis. Plant Physiol. 148(2),1042-54.
135. Mumm, R., Hilker, M. (2006). Direct and indirect chemical defence of pine against folivorous insects. Trends Plant Sci. 11(7),351-358.
136. Muñoz-Mérid, A A., González-Plaza, J. J., Cañada, A., Blanco, A. M, Del García-López, M. C., Rodríguez, J. M., Pedrola, L., Sicardo, M. D., Hernández, M. L., De la Rosa R, Belaj, A., Gil-Borja, M., Luque, F., Martínez-Rivas, J. M., Pisano, D. G., Trelles, O., Valpuesta, V., Beuzón, C. R. (2013). De novo assembly and functional annotation of the olive (olea europaea) transcriptome. DNA Res. 20(1), 93-108.
137. Nalam, V. J., Alam, S., Keereetaweep, J., Venables, B., Burdan, D., Lee, H., Trick, H. N., Sarowar, S., Makandar, R., Shah, J. (2015). Facilitation of Fusarium graminearum infection by 9-lipoxygenases in Arabidopsis and wheat. Mol. Plant-Microbe Interact. 28, 1142-1152.
138. Nath, P., Sane, A. P., Trivedi, P. K., Sane, V. A., Asif, M. H. (2007). Role of transcription factors in regulating ripening, senescence and organ abscission in plants. Stewart Postharvest Rev. 3,1-14.
139. Novaes, E., Drost, D. R., Farmerie, W. G., Pappas, G. J., Grattapaglia, D., Sederoff, R. R, et al. (2008). High-through put gene and SNP discovery in Eucalyptus grandis, an uncharacterized genome. BMC Genomics 9
140. Obied, H. K., Bedgood Jr., D. R., Prenzier, P. D., Robards, K., (2007a). Chemical screening of olive biophenol extracts by hyphenated liquid chromatography. Anal. Chimi. Acta 603, 176-189.
141. Obied, H. K., Prenzler, P. D., Ryan, D., Servili, M., Taticchi, A., Esposto, S., Robards, K. (2008). Biosynthesis and biotransformations of phenol-conjugated oleosidic secoiridoids from Olea europaea L. Nat. Prod. Rep. 25(6), 1167-1179.
142. Ockels, F. S., Eyles, A., McPherson, B. A., Wood, D. L., Bonello, P. (2007). Phenolic chemistry of coast live oak response to Phytophthora ramorum infection. J. Chem. Ecol. 33(9),1721-1732.
143. Ohlrogge, J., Browse, J., (1995). Lipid biosynthesis. The Plant Cell 7, 957-970.
144. Ohtsu, K., Smith, M. B., Emrich, S. J., Borsuk, L. A., Zhou, R. L., Chen, T. L., et al. (2007). Global gene expression analysis of the shoot apical meristem of maize (Zea mays L.). Plant J. 52,391-404.
145. Oliveras López, M. J., Innocenti, M., Ieri, F., Giaccherini, C., Romani, A., Mulinacci, N. (2008). HPLC/DAD/ESI/MS detection of lignans from Spanish and Italian Olea europaea L. fruits. J. Food Comp. Anal. 21, 62-70
146. Omar, S. H. (2010). Oleuropein in olive and its pharmacological effects. Sci. Pharm. 78(2), 133-154.
147. Park, Y. S., Dutta, S., Ann, M., Raaijmakers, J. M., Park, K. (2015). Promotion of plant growth by Pseudomonas fluorescens strain SS101 via novel volatile organic compounds. Biochem. Biophys. Res. Commun. 461, 361-365.
148. Parra-Lobato, M. C., Gomez-Jimenez, M. C. (2011). Polyamine-induced modulation of genes involved in ethylene biosynthesis and signalling pathways and nitric oxide production during olive mature fruit abscission. J. Exp. Bot. 62(13), 4447-4465.
149. Peralbo-Molina, A., Priego-Capote, F., Dolores Luque de Castro, M. (2012). Tentative identification of phenolic compounds in olive pomace using liquid-chromatography-tandem mass spectrometry with a quadropolequadropole-time-of-flight mass detector. J. Agric. Food Chem. 60, 11542-11550.
150. Petersen, R., and Krost, C. (2013). Tracing a key player in the regulation of plant architecture: the columnar growth habit of apple trees (Malus × domestica). Planta 238, 1-22.
151. Pinedo I., Ledger T., Greve M., Poupin M. J. (2015). Burkholderia phytofirmansPsJN induces long-term metabolic and transcriptional changes involved inArabidopsis thaliana salt tolerance. Front. Plant Sci. 6,466
152. Owen, R., Giacosa, A., Hull E., et al. (2000). Olive-oil consumption and health: the possible role of antioxidants. Lancet Oncol. 1, 107-121
153. Owen, R. W., Haubner, R., Mie, R W., Giacosa, A., Hull, W. E., Spiegelhalder, B., Bartsch, H. (2003). Isolation, structure elucidation and antioxidant potential of the major phenolic and flavonoid compounds in brined olive drupes. Food Chem. Toxicol. 41(5), 703-717.
154. Puel, C., Mathey, J., Agalias, A., Kati-Coulibaly, S., Mardon, J., Obled, C., Davicco, M. J., Lebecque, P., Horcajada, M. N., Skaltsounis, A. L., et al. (2006). Dose-response study of effect of oleuropein, an olive oil polyphenol, in an ovariectomy/inflammation experimental model of bone loss in the rat. Clin. Nutr. 25(5), 859-868.
155. Rabello, A. R., Guimarães, C. M., Rangel, P. H. N., da Silva, F. R., Seixas, D., et al. (2008). Identification of drought-responsive genes in roots of upland rice (Oryza sativa L). BMC Genomics 9,485.
156. Rallo, L., Barranco, D., De La Rosa, R., and León, L. (2008). ‘Chiquitita’ olive. Hort. Science 43, 529-531.
157. Ramírez-Tortosa, M. C., Granados, S., Quiles, J. L. (2006). Chemical composition. Types and characteristics of olive oil. Olive Oil and Health. CAB International, Oxfordshire.
158. Reinhardt, D., and Kuhlemeier, C. (2002). Plant architecture. EMBO Rep. 3, 846-850
159. Riachy, M. E., Priego-Capote, F., León, L., Rallo, L., Luque de Castro, M. D. (2011a). Hydrophilic antioxidants of virgin olive oil. Part 1: Hydrophilic phenols: A key factor for virgin olive oil quality. Eur. J. Lipid Sci. Technol. 113, 678-691.
160. Rigane, G., Ben Salem, R., Sayadi, S., Bouaziz, M. (2011). Phenolic composition, isolation, and structure of a new deoxyloganic acid derivative from Dhokar and Gemri-Dhokar olive cultivars. J. Food Sci. 76, 965-973.
161. Riggins, C. W., Peng, Y. H., Stewart, C. N., Tranel, P. J., (2010). Characterization of de novo transcriptome for waterhemp (Amaranthus tuberculatus) using GS-FLX 454 pyrosequenc-ing and its application for studies of herbicide target-site genes. Pest Manag. Sci. 66, 1042-1052.
162. Rizzini, F. M., Bonghi, C., Chkaiban, L., Martinelli, F., Tonutti, P. (2010). Effects ofpostharvest partial dehydration and prolonged treatments with ethylene ontranscript profiling in skins of wine grape berries (Conference Paper). Acta Hortic. 877, 1099-1104.
163. Rodrigues, F., Delaia, M., Zingaretti, S. (2009). Analysis of gene expression profiles under water stress in tolerant and sensitive sugarcane plants. Plant Sci. 176,286-302.
164. Romero-Segura, C., Garcia-Rodriguez, R., Sanchez-Ortiz, A., Sanz, C., Perez, A. G. (2012). The role of olive b-glucosidase in shaping the phenolic fraction of virgin olive oil. Food Res. Int. 45(1), 191-196.
165. Rosati, A., Paoletti, A., Caporali, S., Perri, E. (2013). The role of tree architecture in super high density olive orchards. Sci. Hortic. 161, 24-29.
166. Rugini, E., Fedeli, E. (1990). Olive (Olea europaea L) as an oilseed crop. Springer, Berlin.
167. Ryan, D., Antolovich, M., Herlt, T., Prenzler, P. D., Lavee, S., (2002). Robards, K. Identification of phenolic compounds in tissues of the novel olive cultivar hardy’s mammoth. J. Agric. Food Chem. 50(23), 6716-6724.
168. Ryan, D., Prenzler, P., Lavee, S., Antolovich, M., Robards, K. (2003). Quantitative changes in phenolic content during physiological development of the olive (Olea europaea) cultivar Hardy’s Mammoth. J. Agric. Food Chem. 51, 2532-2538.
169. Sadok, I., Celton, J. M., Essalouh, L., El Aabidine, A. Z., Garcia, G., Martinez, S.,et al. (2013). QTL mapping of flowering and fruiting traits in olive. PLoS ONE 8, e62831.
170. Saimaru, H., Orihara, Y., Tansakul, P., Kang, Y. H., Shibuya, M., Ebizuka, Y. (2007). Production of triterpene acids by cell suspension cultures of Olea europaea. Chem. Pharm. Bull. (Tokyo) 55(5), 784-788.
171. Saito, K., Hirai, M. Y., Yonekura-Sakakibara, K. (2008). Decoding genes with coexpression networks and metabolomics - ‘majority report by precogs’. Trends Plant Sci. 13(1), 36-43.
172. Salem, M., Rexroad, C. E., Wang, J. N., Thorgaard, G. H., Yao, J. B. (2010). Characterization of the rainbow trout transcriptome using Sanger and 454-pyrosequencing approaches. BMC Genomics 11.
173. Savarese, M., De Marco, E., Sacchi, R. (2007). Characterisation of phenolic extracts from olives (Olea europaea cv. Pisciottana) by electrospray ionization mass spectrometry. Food Chem. 105, 761-770
174. Schmitz, G., Theres, K. (2005). Shoot and inflorescence branching. Curr. Opin. Plant Biol. 8, 506-515.
175. Segura, V., Durel, C. -E., Costes, E. (2009). Dissecting apple tree architecture into genetic, ontogenetic and environmental effects: QTL mapping. Tree Genet. Genomes 5, 165-179
176. Servili, M., Baldioli, M., Selvaggini, R., Macchioni, A., Montedoro, G. (1999). Phenolic compounds of olive fruit: one- and twodimensional nuclear magnetic resonance characterization of Nuzhenide and its distribution in the constitutive parts of fruit. J. Agric. Food Chem. 47(1),12-18.
177. Servili, M., Montedoro, G, F. (2002). Contribution of phenolic compounds to virgin olive oil quality. Eur. J. Lipid Sci. Technol. 104, 602-613.
178. Servili, M., Selvaggini, R., Esposto, S., Taticchi, A., Montedoro, G., Morozzi, G. (2004). Health and sensory properties of virgin olive oil hydrophilic phenols:agronomic and technological aspects of production that affect their occurrence in the oil. J Chromatogr. A. 1054(1-2), 113-127.
179. Servili, M., Taticchi, A., Esposto, S., Urbani, S., Selvaggini, R., Montedoro, G. F. (2007). Effect of olive stoning on the volatile and phenolic composition of virgin olive oil. J. Agric. Food Chem. 55, 7028-7035
180. Servili, M., Taticchi, A., Esposto, S., Sordini, B., Urbani, S. (2012). Technological aspects of olive oil production. In: Olive Germplasm - The Olive Cultivation, Table Olive and Olive Oil Industry in Italy.
181. Shibuya, M., Zhang, H., Endo, A., Shishikura, K., Kushiro, T., Ebizuka, Y. (1999). Two branches of the lupeol synthase gene in the molecular evolution of plant oxidosqualene cyclases. Eur. J. Biochem. 266(1), 302-307.
182. Shigeto, J., Nagano, M., Fujita, K., Tsutsumi, Y. (2014). Catalytic profile of Arabidopsis peroxidases, AtPrx-2, 25 and 71, contributing to stem lignification. PLoS ONE 9, e105332
183. Shockey, JM.; Gidda, SK.; Chapital, DC.; Kuan, JC.; Dhanoa, PK.; Bland, JM.; Rothstein, SJ.; Mullen, RT. and Dyer, JM. 2006. Tung (Vernicia fordii) DGAT1 and DGAT2 possess different affinities for eleostearic acid-containing substrates and are localized to different subdomains of the endoplasmic reticulum. The Plant Cell 18, 2294-2313.
184. Silva, S., Gomes, L., Leitão, F., Bronze, M., Coelho, A. V., Boas L. V. (2010). Secoiridoids in olive seed: characterization of nüzhenide and 11-methyl oleosides by liquid chromatography with diode array and mass spectrometry. Grasas y. Aceites 61, 154-164
185. Stiti, N., Triki, S., Hartmann, M. A. (2007). Formation of triterpenoids throughout Olea europaea fruit ontogeny. Lipids, 42, 55-67.
186. Suárez, M., Romero, M. P., Motilva, M. J. (2010). Development of a phenol-enriched olive oil with phenolic compounds from olive cake. J. Agri. Food Chem. 58, 10396-10403
187. Sugarbaker, D. J., Richards, W. G., Gordon GJ, Dong, L., De Rienzo, A., Maulik, G., et al. (2008). Transcriptome sequencing of malignant pleural mesothelioma tumors. P. Natl. Acad. Sci. USA 105, 3521-3526.
188. Sun, W., Xu, X, Zhu, H, Liu, A, Liu L, et al. (2010). Comparative transcriptomic profiling of a salt-tolerant wild tomato species and a salt-sensitive tomato cultivar. Plant Cell Physiol. 51, 997-1006.
189. Tabata, S., Kaneko, T., Nakamura, Y., Kotani, H., Kato, T., Asamizu, E., Miyajima, N., Sasamoto, S., Kimura, T., Hosouchi, T. et al. (2000). Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Nature 408, 823-826
190. Tabatabaei, S. J. (2006). Effects of salinity and N on the growth, photosynthesis and N status of olive (Olea europaea L.) trees. Sci. Hortic. Amsterdam 108, 32-438.
191. Taji, T., Seki, M., Satou, M., Sakurai, T., Kobayashi, M., et al. (2004). Comparative Genomics in Salt Tolerance between Arabidopsis and Arabidopsis-Related Halophyte Salt Cress Using Arabidopsis Microarray 1. Society 135, 1-13.
192. Takahama, U., and Oniki, T. (2000). Flavonoids and some other phenolics as substrates of peroxidase: Physiological significance of the redox reactions. J. Plant Res. 113, 301-309.
193. Taticchi, A., Esposto, S., Veneziani, G., Urbani, S., Selvaggini, R., and Servili, M. (2013). The influence of the malaxation temperature on the activity of polyphenoloxidase and peroxidase and on the phenolic composition of virgin olive oil. Food Chemistry 136, 975-983.
194. Tattini, M., Bertoni, P., Caselli, S. (1992). Genotypic responses of olive plants to sodium chloride. J. Plant Nutr. 15, 1467-1485
195. Templeton, G. W., Nimick, M., Morrice, N., Campbell, D., Goudreault, M., Gingras, A. -C., et al. (2011). Identification and characterization of AtI-2, an Arabidopsis homologue of an ancient protein phosphatase 1 (PP1) regulatory subunit. Biochem. J. 435, 73-83.
196. Therios, I. N., Misopolinos, N. D. (1988). Genotypic Response to Sodium-Chloride Salinity of 4 Major Olive Cultivars (Olea-Europea L). Plant Soil 106, 105-111.
197. Thieme, C. J., Rojas-Triana, M., Stecyk, E., Schudoma, C., Zhang, W., Yang, L., Miñambres, M., Walther, D., Schulze, W. X., Pax-Ares, J., Scheible, W. R., Kragler, F. (2015). Endogenous Arabidopsis messenger RNAs transported to distant tissues. Nature Plants 1, 15025
198. Tjellstrom, H., Yang, Z., Allen, D. K., Ohlrogge, J. B. (2012). Rapid kinetic labeling of Arabidopsis cell suspension cultures: implications for models of lipid export from plastids. Plant Physiol. 158,601-611.
199. To A., Joubès, J., Barthole, G., Lécureuil, A., Scagnelli, A., Jasinsk, I S., et al. (2012). WRINKLED transcription factors orchestrate tissue-specific regulation of fatty acid biosynthesis in Arabidopsis. Plant Cell 24(12), 5007-5023
200. Tosetti, R., Martinelli, F., Tonutti, P., Barupal, D. K. (2012). Metabolomics approachto studying minimally processed peach (Prunus persica) fruit. Acta Hortic. 934, 1017-1022.
201. Torres, T. T., Metta, M., Ottenwalder, B., Schlotterer, C. (2008). Gene expression profiling by massively parallel sequencing. Genome Res. 18, 172-177.
202. Umehara, M., Hanada, A., Yoshida, S., Akiyama, K., Arite, T., Takeda-Kamiya, N., Magome, H., Kamiya, Y., Shirasu, K., Yoneyama, K., et. (2008). alInhibition of shoot branching by new terpenoid plant hormones. Nature 455(7210), 195-200.
203. Updegraff, E. P., Zhao, F., Preuss, D. (2009). The extracellular lipase EXL4 is required for efficient hydration of Arabidopsis pollen. Sex. Plant Reprod. 22, 197-204.
204. Utsumi, Y., Tanaka, M., Morosawa, T., Kurotani, A., Yoshida, T., Mochida, K., et al. (2012). Transcriptome analysis using a high-density oligomicroarray under drought stress in various genotypes of cassava: an important tropical crop. DNA Res. 19, 335-345.
205. Vermeirssen, V., Joshi, A., Michoel, T., Bonnet, E., Casneuf, T., et al. (2009). Molecular BioSystems. Plant Biotech. 5, 1817-1830
206. Vogel, J. T., Walter, M. H., Giavalisco, P., Lytovchenko, A., Kohlen, W., Charnikhova, T., et al. (2010). SlCCD7 controls strigolactone biosynthesis, shoot branching and mycorrhizainduced apocarotenoid formation in tomato. Plant J. 61, 300-311.
207. Waliszewski, K., Marquez, O., and Pardio, V. T. (2009). Quantification and characterisation of polyphenol oxidase from vanilla bean. Food Chem. 117, 196-203.
208. Wallis, C., Eyles, A., Chorbadjian, R., McSpadden Gardener, B., Hansen, R., Cipollini, D., Herms, D. A., Bonello, P. (2008). Systemic induction of phloem secondary metabolism and its relationship to resistance to a canker pathogen in Austrian pine. New Phytol. 177(3), 767-778.
209. Wang, Y., and Li, J. (2008). Molecular basis of plant architecture. Annu. Rev. Plant Biol. 59, 253-279.
210. Wang, Y. C., Gao, C. Q., Liang, Y. N., Wang, C., Yang, C. P., Liu, G. F. (2010). A novel bZIP gene from Tamarix hispida mediates physiological responses to salt stress in tobacco plants. J. Plant Physiol. 167, 222-230
211. Waterman, E., Lockwood, B. (2007). Active Components and Clinical Applications of Olive Oil. Altern. Med. Rev. 12(4), 331-342.
212. Weber, H. (2002). Fatty acid - derived signals in plants. Trends Plant Sci. 7, 217-224
213. Weber, A. P. M., Weber, K. L., Carr, K., Wilkerson, C., Ohlrogge, J. B. (2007) Sampling the arabidopsis transcriptome with massively parallel pyrosequencing, Plant Physiol. 144, 32-42.
214. Wei, W., Zhang, Y. Q., Tao, J. J., Chen, H. W., Li, Q. T., Zhang, W. K., Ma, B., Lin, Q., Zhang, J. S., Chen, S. Y. (2015). The Alfin-like homeodomain finger protein AL5 suppresses multiple negative factors to confer abiotic stress tolerance in Arabidopsis. The Plant Journal 81, 871-883.
215. Wong, C. E., Li, Y., Labbe, A., Guevara, D., Nuin, P., et al. (2006). Transcriptional Profiling Implicates Novel Interactions between Abiotic Stress and Hormonal Responses in Thellungiella, a Close Relative of Arabidopsis 1. Society 140, 1437-1450.
216. Wu, S., Collins, G., Sedgley, M. (2004). A molecular linkage map of olive (Olea europaea L.) based on RAPD, microsatellite, and SCAR markers. Genome 47, 26-35.
217. Yorulmaz, A., Tekin, A., Turan, S. (2011). Improving olive oil quality with double protection: Destoning and malaxation in nitrogen atmosphere. Eur. J. Lipid Sci. Technol. 113, 637-643
218. Yousfi, K., Weiland, C. M., Garcıa, J. M. (2012). Effect of harvesting system and fruit cold storage on virgin olive oil chemical composition and quality of super intensive cultivated ‘Arbequina’ olives. J. Agric. Food Chem. 60, 4743-4750.
219. Yu, H., Gerstein, M. (2006). Genomic analysis of the hierarchical structure of regulatory networks. PNAS, USA 103, 14724-14731
220. Zawitowski, J., Bilideris, C. G., Eskin, N. A. M. (1991). Polyphenoloxidase. In D. S. Robinson and N. A. M. Eskin (Eds.), Oxidative enzymes in foods (London: Elsevier Science Publishers), 217-273