-
1
-
-
37849031086
-
-
The Multinational Arabidopsis Steering Committee (2007) The Multinational Coordinated Arabidopsis thaliana Functional Genomics Project - Annual Report 2007 (http://www.Arabidopsis.org/portals/masc/masc_docs/masc_reports.jsp)
-
-
-
-
2
-
-
3042810286
-
Biosynthesis of isoprenoids via the non-mevalonate pathway
-
Eisenreich W., et al. Biosynthesis of isoprenoids via the non-mevalonate pathway. Cell. Mol. Life Sci. 61 (2004) 1401-1426
-
(2004)
Cell. Mol. Life Sci.
, vol.61
, pp. 1401-1426
-
-
Eisenreich, W.1
-
3
-
-
4444309760
-
Potential of metabolomics as a functional genomics tool
-
Bino R.J., et al. Potential of metabolomics as a functional genomics tool. Trends Plant Sci. 9 (2004) 418-425
-
(2004)
Trends Plant Sci.
, vol.9
, pp. 418-425
-
-
Bino, R.J.1
-
4
-
-
17044391118
-
Integrating genomics and metabolomics for engineering plant metabolic pathways
-
Oksman-Caldentey K.M., and Saito K. Integrating genomics and metabolomics for engineering plant metabolic pathways. Curr. Opin. Biotechnol. 16 (2005) 174-179
-
(2005)
Curr. Opin. Biotechnol.
, vol.16
, pp. 174-179
-
-
Oksman-Caldentey, K.M.1
Saito, K.2
-
5
-
-
33947307759
-
Plant metabolomics: towards biological function and mechanism
-
Schauer N., and Fernie A.R. Plant metabolomics: towards biological function and mechanism. Trends Plant Sci. 11 (2006) 508-516
-
(2006)
Trends Plant Sci.
, vol.11
, pp. 508-516
-
-
Schauer, N.1
Fernie, A.R.2
-
6
-
-
18044394444
-
The secondary metabolism of Arabidopsis thaliana: growing like a weed
-
D'Auria J.C., and Gershenzon J. The secondary metabolism of Arabidopsis thaliana: growing like a weed. Curr. Opin. Plant Biol. 8 (2005) 308-316
-
(2005)
Curr. Opin. Plant Biol.
, vol.8
, pp. 308-316
-
-
D'Auria, J.C.1
Gershenzon, J.2
-
7
-
-
0036649020
-
Large-scale prediction of Saccharomyces cerevisiae gene function using overlapping transcriptional clusters
-
Wu L.F., et al. Large-scale prediction of Saccharomyces cerevisiae gene function using overlapping transcriptional clusters. Nat. Genet. 31 (2002) 255-265
-
(2002)
Nat. Genet.
, vol.31
, pp. 255-265
-
-
Wu, L.F.1
-
8
-
-
3042514191
-
Coexpression analysis of human genes across many microarray data sets
-
Lee H.K., et al. Coexpression analysis of human genes across many microarray data sets. Genome Res. 14 (2004) 1085-1094
-
(2004)
Genome Res.
, vol.14
, pp. 1085-1094
-
-
Lee, H.K.1
-
9
-
-
25444476441
-
Systematic survey reveals general applicability of "guilt-by-association" within gene coexpression networks
-
Wolfe C.J., et al. Systematic survey reveals general applicability of "guilt-by-association" within gene coexpression networks. BMC Bioinformatics 6 (2005) 227
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 227
-
-
Wolfe, C.J.1
-
10
-
-
0141993704
-
A gene-coexpression network for global discovery of conserved genetic modules
-
Stuart J.M., et al. A gene-coexpression network for global discovery of conserved genetic modules. Science 302 (2003) 249-255
-
(2003)
Science
, vol.302
, pp. 249-255
-
-
Stuart, J.M.1
-
11
-
-
0242607632
-
Parallel analysis of transcript and metabolic profiles: a new approach in systems biology
-
Urbanczyk-Wochniak E., et al. Parallel analysis of transcript and metabolic profiles: a new approach in systems biology. EMBO Rep. 4 (2003) 989-993
-
(2003)
EMBO Rep.
, vol.4
, pp. 989-993
-
-
Urbanczyk-Wochniak, E.1
-
12
-
-
33749120080
-
Integration of metabolite with transcript and enzyme activity profiling during diurnal cycles in Arabidopsis rosettes
-
Gibon Y., et al. Integration of metabolite with transcript and enzyme activity profiling during diurnal cycles in Arabidopsis rosettes. Genome Biol. 7 (2006) R76
-
(2006)
Genome Biol.
, vol.7
-
-
Gibon, Y.1
-
13
-
-
27244443126
-
MetaCyc and AraCyc. Metabolic pathway databases for plant research
-
Zhang P., et al. MetaCyc and AraCyc. Metabolic pathway databases for plant research. Plant Physiol. 138 (2005) 27-37
-
(2005)
Plant Physiol.
, vol.138
, pp. 27-37
-
-
Zhang, P.1
-
14
-
-
12144291195
-
MAPMAN: a user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes
-
Thimm O., et al. MAPMAN: a user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes. Plant J. 37 (2004) 914-939
-
(2004)
Plant J.
, vol.37
, pp. 914-939
-
-
Thimm, O.1
-
15
-
-
27244440204
-
KaPPA-view: a web-based analysis tool for integration of transcript and metabolite data on plant metabolic pathway maps
-
Tokimatsu T., et al. KaPPA-view: a web-based analysis tool for integration of transcript and metabolite data on plant metabolic pathway maps. Plant Physiol. 138 (2005) 1289-1300
-
(2005)
Plant Physiol.
, vol.138
, pp. 1289-1300
-
-
Tokimatsu, T.1
-
16
-
-
3042750616
-
Integration of transcriptomics and metabolomics for understanding of global responses to nutritional stresses in Arabidopsis thaliana
-
Hirai M.Y., et al. Integration of transcriptomics and metabolomics for understanding of global responses to nutritional stresses in Arabidopsis thaliana. Proc. Natl. Acad. Sci. U. S. A. 101 (2004) 10205-10210
-
(2004)
Proc. Natl. Acad. Sci. U. S. A.
, vol.101
, pp. 10205-10210
-
-
Hirai, M.Y.1
-
17
-
-
21844472259
-
Elucidation of gene-to-gene and metabolite-to-gene networks in Arabidopsis by integration of metabolomics and transcriptomics
-
Hirai M.Y., et al. Elucidation of gene-to-gene and metabolite-to-gene networks in Arabidopsis by integration of metabolomics and transcriptomics. J. Biol. Chem. 280 (2005) 25590-25595
-
(2005)
J. Biol. Chem.
, vol.280
, pp. 25590-25595
-
-
Hirai, M.Y.1
-
18
-
-
21344452782
-
Integrative gene-metabolite network with implemented causality deciphers informational fluxes of sulphur stress response
-
Nikiforova V.J., et al. Integrative gene-metabolite network with implemented causality deciphers informational fluxes of sulphur stress response. J. Exp. Bot. 56 (2005) 1887-1896
-
(2005)
J. Exp. Bot.
, vol.56
, pp. 1887-1896
-
-
Nikiforova, V.J.1
-
19
-
-
21344444155
-
Systems rebalancing of metabolism in response to sulfur deprivation, as revealed by metabolome analysis of Arabidopsis plants
-
Nikiforova V.J., et al. Systems rebalancing of metabolism in response to sulfur deprivation, as revealed by metabolome analysis of Arabidopsis plants. Plant Physiol. 138 (2005) 304-318
-
(2005)
Plant Physiol.
, vol.138
, pp. 304-318
-
-
Nikiforova, V.J.1
-
20
-
-
34547526914
-
Omics-based identification of Arabidopsis Myb transcription factors regulating aliphatic glucosinolate biosynthesis
-
Hirai M.Y., et al. Omics-based identification of Arabidopsis Myb transcription factors regulating aliphatic glucosinolate biosynthesis. Proc. Natl. Acad. Sci. U. S. A. 104 (2007) 6478-6483
-
(2007)
Proc. Natl. Acad. Sci. U. S. A.
, vol.104
, pp. 6478-6483
-
-
Hirai, M.Y.1
-
21
-
-
0344177200
-
Global expression profiling of sulfur-starved Arabidopsis by DNA macroarray reveals the role of O-acetyl-L-serine as a general regulator of gene expression in response to sulfur nutrition
-
Hirai M.Y., et al. Global expression profiling of sulfur-starved Arabidopsis by DNA macroarray reveals the role of O-acetyl-L-serine as a general regulator of gene expression in response to sulfur nutrition. Plant J. 33 (2003) 651-663
-
(2003)
Plant J.
, vol.33
, pp. 651-663
-
-
Hirai, M.Y.1
-
22
-
-
16544392329
-
Genome-wide reprogramming of primary and secondary metabolism, protein synthesis, cellular growth processes, and the regulatory infrastructure of Arabidopsis in response to nitrogen
-
Scheible W.R., et al. Genome-wide reprogramming of primary and secondary metabolism, protein synthesis, cellular growth processes, and the regulatory infrastructure of Arabidopsis in response to nitrogen. Plant Physiol. 136 (2004) 2483-2499
-
(2004)
Plant Physiol.
, vol.136
, pp. 2483-2499
-
-
Scheible, W.R.1
-
23
-
-
6344245668
-
A prominent role for the CBF cold response pathway in configuring the low-temperature metabolome of Arabidopsis
-
Cook D., et al. A prominent role for the CBF cold response pathway in configuring the low-temperature metabolome of Arabidopsis. Proc. Natl. Acad. Sci. U. S. A. 101 (2004) 15243-15248
-
(2004)
Proc. Natl. Acad. Sci. U. S. A.
, vol.101
, pp. 15243-15248
-
-
Cook, D.1
-
24
-
-
17044369876
-
Functional genomics by integrated analysis of metabolome and transcriptome of Arabidopsis plants over-expressing an MYB transcription factor
-
Tohge T., et al. Functional genomics by integrated analysis of metabolome and transcriptome of Arabidopsis plants over-expressing an MYB transcription factor. Plant J. 42 (2005) 218-235
-
(2005)
Plant J.
, vol.42
, pp. 218-235
-
-
Tohge, T.1
-
25
-
-
34248329496
-
Convergent evolution in the BAHD family of acyl transferases: identification and characterization of anthocyanin acyl transferases from Arabidopsis thaliana
-
Luo J., et al. Convergent evolution in the BAHD family of acyl transferases: identification and characterization of anthocyanin acyl transferases from Arabidopsis thaliana. Plant J. 50 (2007) 678-695
-
(2007)
Plant J.
, vol.50
, pp. 678-695
-
-
Luo, J.1
-
26
-
-
13444301492
-
Molecular phenotyping of the pal1 and pal2 mutants of Arabidopsis thaliana reveals far-reaching consequences on phenylpropanoid, amino acid, and carbohydrate metabolism
-
Rohde A., et al. Molecular phenotyping of the pal1 and pal2 mutants of Arabidopsis thaliana reveals far-reaching consequences on phenylpropanoid, amino acid, and carbohydrate metabolism. Plant Cell 16 (2004) 2749-2771
-
(2004)
Plant Cell
, vol.16
, pp. 2749-2771
-
-
Rohde, A.1
-
27
-
-
16244362244
-
A gene expression map of Arabidopsis thaliana development
-
Schmid M., et al. A gene expression map of Arabidopsis thaliana development. Nat. Genet. 37 (2005) 501-506
-
(2005)
Nat. Genet.
, vol.37
, pp. 501-506
-
-
Schmid, M.1
-
28
-
-
0347968038
-
NASCArrays: a repository for microarray data generated by NASC's transcriptomics service
-
Craigon D.J., et al. NASCArrays: a repository for microarray data generated by NASC's transcriptomics service. Nucleic Acids Res. 32 (2004) D575-D577
-
(2004)
Nucleic Acids Res.
, vol.32
-
-
Craigon, D.J.1
-
29
-
-
34249697574
-
Approaches for extracting practical information from gene co-expression networks in plant biology
-
Aoki K., et al. Approaches for extracting practical information from gene co-expression networks in plant biology. Plant Cell Physiol. 48 (2007) 381-390
-
(2007)
Plant Cell Physiol.
, vol.48
, pp. 381-390
-
-
Aoki, K.1
-
30
-
-
35948931439
-
An Arabidopsis gene network based on the graphical Gaussian model
-
Ma S., et al. An Arabidopsis gene network based on the graphical Gaussian model. Genome Res. 17 (2007) 1614-1625
-
(2007)
Genome Res.
, vol.17
, pp. 1614-1625
-
-
Ma, S.1
-
31
-
-
33846061087
-
ATTED-II: a database of co-expressed genes and cis elements for identifying co-regulated gene groups in Arabidopsis
-
Obayashi T., et al. ATTED-II: a database of co-expressed genes and cis elements for identifying co-regulated gene groups in Arabidopsis. Nucleic Acids Res. 35 (2007) D863-D869
-
(2007)
Nucleic Acids Res.
, vol.35
-
-
Obayashi, T.1
-
32
-
-
34447502537
-
Identification of a flavonol 7-O-rhamnosyltransferase gene determining flavonoid pattern in Arabidopsis by transcriptome coexpression analysis and reverse genetics
-
Yonekura-Sakakibara K., et al. Identification of a flavonol 7-O-rhamnosyltransferase gene determining flavonoid pattern in Arabidopsis by transcriptome coexpression analysis and reverse genetics. J. Biol. Chem. 282 (2007) 14932-14941
-
(2007)
J. Biol. Chem.
, vol.282
, pp. 14932-14941
-
-
Yonekura-Sakakibara, K.1
-
33
-
-
34247598751
-
Phytochemical genomics in Arabidopsis thaliana: A case study for functional identification of flavonoid biosynthesis genes
-
Tohge T., et al. Phytochemical genomics in Arabidopsis thaliana: A case study for functional identification of flavonoid biosynthesis genes. Pure Appl. Chem. 79 (2007) 811-823
-
(2007)
Pure Appl. Chem.
, vol.79
, pp. 811-823
-
-
Tohge, T.1
-
34
-
-
33644653602
-
Genome-wide analysis of hydrogen peroxide-regulated gene expression in Arabidopsis reveals a high light-induced transcriptional cluster involved in anthocyanin biosynthesis
-
Vanderauwera S., et al. Genome-wide analysis of hydrogen peroxide-regulated gene expression in Arabidopsis reveals a high light-induced transcriptional cluster involved in anthocyanin biosynthesis. Plant Physiol. 139 (2005) 806-821
-
(2005)
Plant Physiol.
, vol.139
, pp. 806-821
-
-
Vanderauwera, S.1
-
35
-
-
34249783437
-
Identification of a flavin-monooxygenase as the S-oxygenating enzyme in aliphatic glucosinolate biosynthesis in Arabidopsis
-
Hansen B.G., et al. Identification of a flavin-monooxygenase as the S-oxygenating enzyme in aliphatic glucosinolate biosynthesis in Arabidopsis. Plant J. 50 (2007) 902-910
-
(2007)
Plant J.
, vol.50
, pp. 902-910
-
-
Hansen, B.G.1
-
36
-
-
20844445318
-
Identification of genes required for cellulose synthesis by regression analysis of public microarray data sets
-
Persson S., et al. Identification of genes required for cellulose synthesis by regression analysis of public microarray data sets. Proc. Natl. Acad. Sci. U. S. A. 102 (2005) 8633-8638
-
(2005)
Proc. Natl. Acad. Sci. U. S. A.
, vol.102
, pp. 8633-8638
-
-
Persson, S.1
-
37
-
-
23644461190
-
Transcriptional co-regulation of secondary metabolism enzymes in Arabidopsis: functional and evolutionary implications
-
Gachon C.M., et al. Transcriptional co-regulation of secondary metabolism enzymes in Arabidopsis: functional and evolutionary implications. Plant Mol. Biol. 58 (2005) 229-245
-
(2005)
Plant Mol. Biol.
, vol.58
, pp. 229-245
-
-
Gachon, C.M.1
-
38
-
-
22044448669
-
Sparse graphical Gaussian modeling of the isoprenoid gene network in Arabidopsis thaliana
-
Wille A., et al. Sparse graphical Gaussian modeling of the isoprenoid gene network in Arabidopsis thaliana. Genome Biol. 5 (2004) R92
-
(2004)
Genome Biol.
, vol.5
-
-
Wille, A.1
-
39
-
-
18744415447
-
Identification of brassinosteroid-related genes by means of transcript co-response analyses
-
Lisso J., et al. Identification of brassinosteroid-related genes by means of transcript co-response analyses. Nucleic Acids Res. 33 (2005) 2685-2696
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 2685-2696
-
-
Lisso, J.1
-
40
-
-
55449107813
-
Inferring hypotheses on functional relationships of genes: Analysis of the Arabidopsis thaliana subtilase gene family
-
Rautengarten C., et al. Inferring hypotheses on functional relationships of genes: Analysis of the Arabidopsis thaliana subtilase gene family. PLoS Comput. Biol. 1 (2005) e40
-
(2005)
PLoS Comput. Biol.
, vol.1
-
-
Rautengarten, C.1
-
41
-
-
38149040817
-
A global survey of gene regulation during cold acclimation in Arabidopsis thaliana
-
Hannah M.A., et al. A global survey of gene regulation during cold acclimation in Arabidopsis thaliana. PLoS Genet. 1 (2005) e26
-
(2005)
PLoS Genet.
, vol.1
-
-
Hannah, M.A.1
-
42
-
-
33750063171
-
Transcriptional coordination of the metabolic network in Arabidopsis
-
Wei H., et al. Transcriptional coordination of the metabolic network in Arabidopsis. Plant Physiol. 142 (2006) 762-774
-
(2006)
Plant Physiol.
, vol.142
, pp. 762-774
-
-
Wei, H.1
-
43
-
-
0036693526
-
Differential display analysis of gene expression in plants
-
Yamazaki M., and Saito K. Differential display analysis of gene expression in plants. Cell. Mol. Life Sci. 59 (2002) 1246-1255
-
(2002)
Cell. Mol. Life Sci.
, vol.59
, pp. 1246-1255
-
-
Yamazaki, M.1
Saito, K.2
-
44
-
-
0036959970
-
A genomics approach to the early stages of triterpene saponin biosynthesis in Medicago truncatula
-
Suzuki H., et al. A genomics approach to the early stages of triterpene saponin biosynthesis in Medicago truncatula. Plant J. 32 (2002) 1033-1048
-
(2002)
Plant J.
, vol.32
, pp. 1033-1048
-
-
Suzuki, H.1
-
45
-
-
13244292589
-
Metabolic profiling of Medicago truncatula cell cultures reveals the effects of biotic and abiotic elicitors on metabolism
-
Broeckling C.D., et al. Metabolic profiling of Medicago truncatula cell cultures reveals the effects of biotic and abiotic elicitors on metabolism. J. Exp. Bot. 56 (2005) 323-336
-
(2005)
J. Exp. Bot.
, vol.56
, pp. 323-336
-
-
Broeckling, C.D.1
-
46
-
-
15544364507
-
Genomics-based selection and functional characterization of triterpene glycosyltransferases from the model legume Medicago truncatula
-
Achnine L., et al. Genomics-based selection and functional characterization of triterpene glycosyltransferases from the model legume Medicago truncatula. Plant J. 41 (2005) 875-887
-
(2005)
Plant J.
, vol.41
, pp. 875-887
-
-
Achnine, L.1
-
47
-
-
20144376484
-
Methyl jasmonate and yeast elicitor induce differential transcriptional and metabolic re-programming in cell suspension cultures of the model legume Medicago truncatula
-
Suzuki H., et al. Methyl jasmonate and yeast elicitor induce differential transcriptional and metabolic re-programming in cell suspension cultures of the model legume Medicago truncatula. Planta 220 (2005) 696-707
-
(2005)
Planta
, vol.220
, pp. 696-707
-
-
Suzuki, H.1
-
48
-
-
0037815199
-
A functional genomics approach toward the understanding of secondary metabolism in plant cells
-
Goossens A., et al. A functional genomics approach toward the understanding of secondary metabolism in plant cells. Proc. Natl. Acad. Sci. U. S. A. 100 (2003) 8595-8600
-
(2003)
Proc. Natl. Acad. Sci. U. S. A.
, vol.100
, pp. 8595-8600
-
-
Goossens, A.1
-
49
-
-
33645763235
-
Gene-to-metabolite networks for terpenoid indole alkaloid biosynthesis in Catharanthus roseus cells
-
Rischer H., et al. Gene-to-metabolite networks for terpenoid indole alkaloid biosynthesis in Catharanthus roseus cells. Proc. Natl. Acad. Sci. U. S. A. 103 (2006) 5614-5619
-
(2006)
Proc. Natl. Acad. Sci. U. S. A.
, vol.103
, pp. 5614-5619
-
-
Rischer, H.1
-
50
-
-
33749241876
-
Comparative transcript and alkaloid profiling in Papaver species identifies a short chain dehydrogenase/reductase involved in morphine biosynthesis
-
Ziegler J., et al. Comparative transcript and alkaloid profiling in Papaver species identifies a short chain dehydrogenase/reductase involved in morphine biosynthesis. Plant J. 48 (2006) 177-192
-
(2006)
Plant J.
, vol.48
, pp. 177-192
-
-
Ziegler, J.1
-
51
-
-
33947217953
-
Gene transcript and metabolite profiling of elicitor-induced opium poppy cell cultures reveals the coordinate regulation of primary and secondary metabolism
-
Zulak K.G., et al. Gene transcript and metabolite profiling of elicitor-induced opium poppy cell cultures reveals the coordinate regulation of primary and secondary metabolism. Planta 225 (2007) 1085-1106
-
(2007)
Planta
, vol.225
, pp. 1085-1106
-
-
Zulak, K.G.1
-
52
-
-
12944267048
-
Identification of the SAAT gene involved in strawberry flavor biogenesis by use of DNA microarrays
-
Aharoni A., et al. Identification of the SAAT gene involved in strawberry flavor biogenesis by use of DNA microarrays. Plant Cell 12 (2000) 647-662
-
(2000)
Plant Cell
, vol.12
, pp. 647-662
-
-
Aharoni, A.1
-
53
-
-
0036801491
-
Rose scent: genomics approach to discovering novel floral fragrance-related genes
-
Guterman I., et al. Rose scent: genomics approach to discovering novel floral fragrance-related genes. Plant Cell 14 (2002) 2325-2338
-
(2002)
Plant Cell
, vol.14
, pp. 2325-2338
-
-
Guterman, I.1
-
54
-
-
4444297148
-
Combined transcript and metabolite analysis reveals genes involved in spider mite induced volatile formation in cucumber plants
-
Mercke P., et al. Combined transcript and metabolite analysis reveals genes involved in spider mite induced volatile formation in cucumber plants. Plant Physiol. 135 (2004) 2012-2024
-
(2004)
Plant Physiol.
, vol.135
, pp. 2012-2024
-
-
Mercke, P.1
-
55
-
-
31344480976
-
Metabolic, genomic, and biochemical analyses of glandular trichomes from the wild tomato species Lycopersicon hirsutum identify a key enzyme in the biosynthesis of methylketones
-
Fridman E., et al. Metabolic, genomic, and biochemical analyses of glandular trichomes from the wild tomato species Lycopersicon hirsutum identify a key enzyme in the biosynthesis of methylketones. Plant Cell 17 (2005) 1252-1267
-
(2005)
Plant Cell
, vol.17
, pp. 1252-1267
-
-
Fridman, E.1
-
56
-
-
33744504174
-
Tomato aromatic amino acid decarboxylases participate in synthesis of the flavor volatiles 2-phenylethanol and 2-phenylacetaldehyde
-
Tieman D., et al. Tomato aromatic amino acid decarboxylases participate in synthesis of the flavor volatiles 2-phenylethanol and 2-phenylacetaldehyde. Proc. Natl. Acad. Sci. U. S. A. 103 (2006) 8287-8292
-
(2006)
Proc. Natl. Acad. Sci. U. S. A.
, vol.103
, pp. 8287-8292
-
-
Tieman, D.1
-
57
-
-
23944444037
-
Profiling of diurnal patterns of metabolite and transcript abundance in potato (Solanum tuberosum) leaves
-
Urbanczyk-Wochniak E., et al. Profiling of diurnal patterns of metabolite and transcript abundance in potato (Solanum tuberosum) leaves. Planta 221 (2005) 891-903
-
(2005)
Planta
, vol.221
, pp. 891-903
-
-
Urbanczyk-Wochniak, E.1
-
58
-
-
33344476119
-
Transcriptome and selected metabolite analyses reveal multiple points of ethylene control during tomato fruit development
-
Alba R., et al. Transcriptome and selected metabolite analyses reveal multiple points of ethylene control during tomato fruit development. Plant Cell 17 (2005) 2954-2965
-
(2005)
Plant Cell
, vol.17
, pp. 2954-2965
-
-
Alba, R.1
-
59
-
-
33845665396
-
Integrated analysis of metabolite and transcript levels reveals the metabolic shifts that underlie tomato fruit development and highlight regulatory aspects of metabolic network behavior
-
Carrari F., et al. Integrated analysis of metabolite and transcript levels reveals the metabolic shifts that underlie tomato fruit development and highlight regulatory aspects of metabolic network behavior. Plant Physiol. 142 (2006) 1380-1396
-
(2006)
Plant Physiol.
, vol.142
, pp. 1380-1396
-
-
Carrari, F.1
-
60
-
-
20244380782
-
GMD@CSB.DB: the Golm Metabolome Database
-
Kopka J., et al. GMD@CSB.DB: the Golm Metabolome Database. Bioinformatics 21 (2005) 1635-1638
-
(2005)
Bioinformatics
, vol.21
, pp. 1635-1638
-
-
Kopka, J.1
-
61
-
-
84983633298
-
KNApSAcK: A comprehensive species-metabolite relationship database
-
Saito K., et al. (Ed), Springer
-
Shinbo V., et al. KNApSAcK: A comprehensive species-metabolite relationship database. In: Saito K., et al. (Ed). Biotechnology in Agriculture and Forestry 57 Plant Metabolomics (2006), Springer 165-184
-
(2006)
Biotechnology in Agriculture and Forestry 57 Plant Metabolomics
, pp. 165-184
-
-
Shinbo, V.1
-
62
-
-
33747137944
-
A liquid chromatography-mass spectrometry-based metabolome database for tomato
-
Moco S., et al. A liquid chromatography-mass spectrometry-based metabolome database for tomato. Plant Physiol. 141 (2006) 1205-1218
-
(2006)
Plant Physiol.
, vol.141
, pp. 1205-1218
-
-
Moco, S.1
-
63
-
-
34250193318
-
Site-Seeing by Sequencing
-
Fields S. Site-Seeing by Sequencing. Science 316 (2007) 1441-1442
-
(2007)
Science
, vol.316
, pp. 1441-1442
-
-
Fields, S.1
-
64
-
-
34247612307
-
Multiple high-throughput analyses monitor the response of E. coli to perturbations
-
Ishii N., et al. Multiple high-throughput analyses monitor the response of E. coli to perturbations. Science 316 (2007) 593-597
-
(2007)
Science
, vol.316
, pp. 593-597
-
-
Ishii, N.1
-
65
-
-
36248929401
-
Predicting state transitions in the transcriptome and metabolome using a linear dynamical system model
-
10.1186/1471-2105-8-343
-
Morioka R., et al. Predicting state transitions in the transcriptome and metabolome using a linear dynamical system model. BMC Bioinformatics 8 (2007) 343 10.1186/1471-2105-8-343
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 343
-
-
Morioka, R.1
-
66
-
-
37849016716
-
Unbiased characterization of genotype-dependent metabolic regulations by metabolomic approach in Arabidopsis thaliana
-
10.1186/1752-0509-1-53
-
Kusano M., et al. Unbiased characterization of genotype-dependent metabolic regulations by metabolomic approach in Arabidopsis thaliana. BMC Systems Biology 1 (2007) 53 10.1186/1752-0509-1-53
-
(2007)
BMC Systems Biology
, vol.1
, pp. 53
-
-
Kusano, M.1
-
67
-
-
0034871530
-
The R2R3-MYB gene family in Arabidopsis thaliana
-
Stracke R., et al. The R2R3-MYB gene family in Arabidopsis thaliana. Curr. Opin. Plant Biol. 4 (2001) 447-456
-
(2001)
Curr. Opin. Plant Biol.
, vol.4
, pp. 447-456
-
-
Stracke, R.1
-
69
-
-
0037371971
-
Phytochemistry meets genome analysis, and beyond
-
Dixon R.A., and Strack D. Phytochemistry meets genome analysis, and beyond. Phytochemistry 62 (2003) 815-816
-
(2003)
Phytochemistry
, vol.62
, pp. 815-816
-
-
Dixon, R.A.1
Strack, D.2
-
70
-
-
0037373214
-
Metabolome diversity: too few genes, too many metabolites?
-
Schwab W. Metabolome diversity: too few genes, too many metabolites?. Phytochemistry 62 (2003) 837-849
-
(2003)
Phytochemistry
, vol.62
, pp. 837-849
-
-
Schwab, W.1
-
71
-
-
0036536289
-
Engineering secondary metabolite production in plants
-
Verpoorte R., and Memelink J. Engineering secondary metabolite production in plants. Curr. Opin. Biotechnol. 13 (2002) 181-187
-
(2002)
Curr. Opin. Biotechnol.
, vol.13
, pp. 181-187
-
-
Verpoorte, R.1
Memelink, J.2
-
72
-
-
33645070537
-
Plant metabolomics: from holistic hope, to hype, to hot topic
-
Hall R.D. Plant metabolomics: from holistic hope, to hype, to hot topic. New Phytol. 169 (2006) 453-468
-
(2006)
New Phytol.
, vol.169
, pp. 453-468
-
-
Hall, R.D.1
-
73
-
-
33750055741
-
Clarification of pathway-specific inhibition by Fourier transform ion cyclotron resonance/mass spectrometry-based metabolic phenotyping studies
-
Oikawa A., et al. Clarification of pathway-specific inhibition by Fourier transform ion cyclotron resonance/mass spectrometry-based metabolic phenotyping studies. Plant Physiol. 142 (2006) 398-413
-
(2006)
Plant Physiol.
, vol.142
, pp. 398-413
-
-
Oikawa, A.1
-
74
-
-
33344469496
-
A novel approach for nontargeted data analysis for metabolomics. Large-scale profiling of tomato fruit volatiles
-
Tikunov Y., et al. A novel approach for nontargeted data analysis for metabolomics. Large-scale profiling of tomato fruit volatiles. Plant Physiol. 139 (2005) 1125-1137
-
(2005)
Plant Physiol.
, vol.139
, pp. 1125-1137
-
-
Tikunov, Y.1
-
75
-
-
34248580879
-
Gas chromatography mass spectrometry-based metabolite profiling in plants
-
Lisec J., et al. Gas chromatography mass spectrometry-based metabolite profiling in plants. Nat. Protoc. 1 (2006) 387-396
-
(2006)
Nat. Protoc.
, vol.1
, pp. 387-396
-
-
Lisec, J.1
-
76
-
-
34248512719
-
Untargeted large-scale plant metabolomics using liquid chromatography coupled to mass spectrometry
-
De Vos R.C., et al. Untargeted large-scale plant metabolomics using liquid chromatography coupled to mass spectrometry. Nat. Protoc. 2 (2007) 778-791
-
(2007)
Nat. Protoc.
, vol.2
, pp. 778-791
-
-
De Vos, R.C.1
-
77
-
-
33645746673
-
Comprehensive metabolic profiling and phenotyping of interspecific introgression lines for tomato improvement
-
Schauer N., et al. Comprehensive metabolic profiling and phenotyping of interspecific introgression lines for tomato improvement. Nat. Biotechnol. 24 (2006) 447-454
-
(2006)
Nat. Biotechnol.
, vol.24
, pp. 447-454
-
-
Schauer, N.1
-
78
-
-
33745580270
-
The genetics of plant metabolism
-
Keurentjes J.J., et al. The genetics of plant metabolism. Nat. Genet. 38 (2006) 842-849
-
(2006)
Nat. Genet.
, vol.38
, pp. 842-849
-
-
Keurentjes, J.J.1
-
79
-
-
13444264729
-
GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox
-
Zimmermann P., et al. GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox. Plant Physiol. 136 (2004) 2621-2632
-
(2004)
Plant Physiol.
, vol.136
, pp. 2621-2632
-
-
Zimmermann, P.1
-
80
-
-
27244438560
-
Gene-expression analysis and network discovery using Genevestigator
-
Zimmermann P., et al. Gene-expression analysis and network discovery using Genevestigator. Trends Plant Sci. 10 (2005) 407-409
-
(2005)
Trends Plant Sci.
, vol.10
, pp. 407-409
-
-
Zimmermann, P.1
-
81
-
-
12344328434
-
CSB.DB: a comprehensive systems-biology database
-
Steinhauser D., et al. CSB.DB: a comprehensive systems-biology database. Bioinformatics 20 (2004) 3647-3651
-
(2004)
Bioinformatics
, vol.20
, pp. 3647-3651
-
-
Steinhauser, D.1
-
82
-
-
22044437388
-
The Botany Array Resource: e-Northerns, Expression Angling, and promoter analyses
-
Toufighi K., et al. The Botany Array Resource: e-Northerns, Expression Angling, and promoter analyses. Plant J. 43 (2005) 153-163
-
(2005)
Plant J.
, vol.43
, pp. 153-163
-
-
Toufighi, K.1
-
83
-
-
33646844440
-
The Arabidopsis co-expression tool (ACT): a WWW-based tool and database for microarray-based gene expression analysis
-
Jen C.H., et al. The Arabidopsis co-expression tool (ACT): a WWW-based tool and database for microarray-based gene expression analysis. Plant J. 46 (2006) 336-348
-
(2006)
Plant J.
, vol.46
, pp. 336-348
-
-
Jen, C.H.1
|