A molecular linkage map of olive (Olea europaea L.) based on RAPD, microsatellite, and SCAR markers

Genome

Volumn 47, Issue 1, 2004, Pages 26-35

  Wu, Shu Biao ^a   Collins, Graham ^a   Sedgley, Margaret ^a  

^a UNIVERSITY OF ADELAIDE   (Australia)

Author keywords

Genome mapping; Olea europea; Peacock disease resistance; RAPD; SCAR; SSR

Indexed keywords

MICROSATELLITE DNA;

ARTICLE; CHROMOSOME MAP; COMPARATIVE STUDY; CROSS BREEDING; GENETIC MARKER; GENETICS; GENOME; INNATE IMMUNITY; OLIVE TREE; PLANT DISEASE; RANDOM AMPLIFIED POLYMORPHIC DNA;

CHROMOSOME MAPPING; CROSSES, GENETIC; GENETIC MARKERS; GENOME, PLANT; IMMUNITY, NATURAL; MICROSATELLITE REPEATS; OLEA; PLANT DISEASES; RANDOM AMPLIFIED POLYMORPHIC DNA TECHNIQUE;

OLEA EUROPAEA;

EID: 1942424148     PISSN: 08312796     EISSN: None     Source Type: Journal    
DOI: 10.1139/g03-091     Document Type: Article

References (48)

1. Angiolillo, A., Mencuccini, M., and Baldoni, L. 1999. Olive genetic diversity assessed using amplified fragment length polymorphisms. Theor. Appl. Genet. 98: 411-421.
2. Baldoni, L., Angiolillo, A., Pellegrini, M., Mencuccini, M., Metzidakis, I.T., and Voyiatzis, D.G. 1999. A linkage genome map for olive as an important tool for marker-assisted selection. Acta Hortic. 474: 111-115.
3. Beckman, J., and Soller, M. 1983. Restriction fragment length polymorphism in genetic improvement: methodologies, mapping and costs. Theor. Appl. Genet. 67: 35-43.
4. Besnard, G., and Berville, A. 2002. On chloroplast DNA variations in the olive (Olea europaea L.) complex: comparison of RFLP and PCR polymorphisms. Theor. Appl. Genet. 104: 1157-1163.
5. Bradshaw, H.D., and Stettler, R.F. 1994. Molecular genetics of growth and development in populus. 2. Segregation distortion due to genetic load. Theor. Appl. Genet. 89: 551-558.
6. Casasoli, M., Mattioni, C., Cherubini, M., and Villani, F. 2001. A genetic linkage map of European chestnut (Castanea sativa Mill.) based on RAPD, ISSR and isozyme markers. Theor. Appl. Genet. 102: 1190-1199.
7. Cipriani, G., Marrazzo, M.T., Marconi, R., Cimato, A., and Testolin, R. 2002. Microsatellite markers isolated in olive (Olea europaea L.) are suitable for individual fingerprinting and reveal polymorphism within ancient cultivars. Theor. Appl. Genet 104: 223-228.
8. Collins, G.G., and Symons, R.H. 1993. Polymorphisms in grapevine DNA detected by the RAPD PCR technique. Plant Mol. Biol. Rep. 11: 105-112.
9. Conner, P.J., Brown, S.K., and Weeden, N.F. 1997. Randomly amplified polymorphic DNA-based genetic linkage maps of three apple cultivars. J. Am. Soc. Hortic. Sci. 122: 350-359.
10. Conner, P.J., Brown, S.K., and Weeden, N.F. 1998. Molecular-marker analysis of quantitative traits for growth and development in juvenile apple trees. Theor. Appl. Genet. 96: 1027-1035.
11. De Caraffa, V.B., Maury, J., Gambotti, C., Breton, C., Berville, A., and Giannettini, J. 2002. Mitochondrial DNA variation and RAPD mark oleasters, olive and feral olive from Western and Eastern Mediterranean. Theor. Appl. Genet. 104: 1209-1216.
12. Excoffier, L. 2002. Introduction to population genetics (5). Selection models. Computation and Molecular Population Genetics Laboratory (CMPG), Zoological Institute, Baltzerstrasse 6, 3012 Bern. http://www.cmpg.unibe.ch.
13. Fabbri, A., Hormaza, J.I., and Polito, V.S. 1995. Random amplified polymorphic DNA analysis of olive (Olea europaea L.) cultivars. J. Am. Soc. Hortic. Sci. 120: 538-542.
14. Grattapaglia, D., and Sederoff, R. 1994. Genetic linkage maps of Eucalyptus grandis and Eucalyptus urophylla using a pseudotestcross - mapping strategy and RAPD markers. Genetics, 137: 1121-1137.
15. Guerin, J., Collins, G., and Sedgley, M. 2000. Selection and breeding of olive cultivars. Outlook Agric. 29: 263-268.
16. Hackett, C.A., Wachira, F.N., Paul, S., Powell, W., and Waugh, R. 2000. Construction of a genetic linkage map for Camellia sinensis (tea). Heredity, 85: 346-355.
17. Hernandez, P., De La Rosa, R., Rallo, L., Dorado, G., and Martin, A. 2001a. Development of SCAR markers in olive (Olea europaea) by direct sequencing of RAPD products: applications in olive germplasm evaluation and mapping. Theor. Appl. Genet. 103: 788-791.
18. Hernandez, P., De La Rosa, R., Rallo, L., Martin, A., and Dorado, G. 2001b. First evidence of a retrotransposon-like element in olive (Olea europaea): implications in plant variety identification by SCAR-marker development. Theor. Appl. Genet. 102: 1082-1087.
19. Hulbert, S.H., and Michelmore, R.W. 1988. DNA restriction fragment length polymorphism and somatic variation in the lettuce downy mildew fungus, Bremia lactucae. Mol. Plant-Microbe Interact. 1: 17-24.
20. Jermstad, K.D., Bassoni, D.L., Wheeler, N.C., and Neale, D.B. 1998. A sex-averaged genetic linkage map in coastal douglas-fir (Pseudotsuga menziesii). Theor. Appl. Genet. 97: 762-770.
21. Kosambi, D. 1944. The estimation of map distances from recombination values. Ann. Eugen. 12: 172-175.
22. Lande, R. 1991. Marker-assisted selection in relation to traditional methods of plant breeding. In Plant breeding in the 1990s. Edited by H. Stalker and J. Murphy. CAB International, Wallingford, U.K. pp. 437-451.
23. Lange, K., and Boehnke, M. 1982. How many polymorhpic genes will it take to span the human genome? Am. J. Hum. Genet. 34: 842-845.
24. la Rosa, R., Angiolillo, A., Guerrero, C., Pellegrini, M., Rallo, L., Besnard, G., Bervillé, A., Martin, A., and Baldoni, L. 2003. A first linkage map of olive (Olea europea L.) cultivars using RAPD, AFLP, RFLP and SSR markers. Theor. Appl. Genet. 106: 1273-1282.
25. Lefort, F., Brachet, S., Frascaria-Lacoste, N., Edwards, K.J., and Douglas, G.C. 1999. Identification and characterization of microsatellite loci in ash (Fraxinus excelsior L.) and their conservation in the olive family (Oleaceae). Mol. Ecol. 8: 1088-1090.
26. Mekuria, G.T., Collins, G.G., and Sedgley, M. 1999. Genetic variability between different accessions of some common commercial olive cultivars. J. Hortic. Sci. Biotechnol. 74: 309-314.
27. Mekuria, G.T., Collins, G., and Sedgley, M. 2002a. Genetic diversity within an isolated olive (Olea europaea L.) population in relation to feral spread. Sci. Hortic. 94: 91-105.
28. Mekuria, G.T., Sedgley, M., Collins, G., and Lavee, S. 2002b. Development of a sequence-tagged site for the RAPD marker linked to leaf spot resistance in olive. J. Am. Soc. Hortic. Sci. 127: 673-676.
29. Morgante, M., Pfeiffer, A., Jurman, I., Paglia, G., and Olivieri, A. 1998. Isolation of microsatellite markers in plants. In Molecular tools for screening biodiversity. Edited by A. Karp, P.G. Isaac, and D.S. Ingram. Chapman and Hall, London, U.K. pp. 75-134.
30. Plomion, C., Omalley, D.M., and Durel, C.E. 1995. Genomic analysis in maritime pine (Pinus pinaster) - comparison of two RAPD maps using selfed and open-pollinated seeds of the same individual. Theor. Appl. Genet. 90: 1028-1034.
31. Rafalski, J.A., and Tingey, S.V. 1993. Genetic diagnostics in plant breeding - RAPDs, microsatellites and machines. Trends Genet. 9: 275-280.
32. Rallo, L., Cuevas, J., and Rapoport, H.F. 1990. Fruit set pattern in self- and open-pollinated olive cultivars. Acta Hortic. 286: 219-222.
33. Rallo, P., Dorado, G., and Martin, A. 2000. Development of simple sequence repeats (SSRs) in olive tree (Olea europaea L.). Theor. Appl. Genet. 101: 984-989.
34. Refseth, U.H., Fangan, B.M., and Jakobsen, K.S. 1997. Hybridization capture of microsatellites directly from genomic DNA. Electrophoresis, 18: 1519-1523.
35. Rohlf, F. 1998. NTSYS-pc: numerical taxonomy and multivariate analysis system. Exeter Software, Setauket, N.Y.
36. Sefc, K.M., Lopes, S., Mendonca, D., Dos Santos, M.R., Machado, M.L.D., and Machado, A.D. 2000. Identification of microsatellite loci in olive (Olea europaea) and their characterization in Italian and Iberian olive trees. Mol. Ecol. 9: 1171-1173.
37. Stam, P. 1993. Construction of integrated genetic linkage maps by means of a new computer package: JOINMAP. Plant J. 3: 739-744.
38. Staub, J.E., Serquen, F.C., and Gupta, M. 1996. Genetic markers, map construction, and their application in plant breeding. HortScience, 31: 729-741.
39. Tanksley, S.D. 1993. Mapping polygenes. Annu. Rev. Genet. 27: 205-233.
40. Tanksley, S., Young, N., Paterson, A., and Bonierbale, M. 1989. RFLP mapping in plant breeding: new tools for an old science. Biotechnology, 7: 257-264.
41. Thompson, J.D., Gibson, T.J., Plewniak, F., Jeanmougin, F., and Higgins, D.G. 1997. The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 24: 4876-4882.
42. Verhaegen, D., and Plomion, C. 1996. Genetic mapping in Eucalyptus urophylla and Eucalyptus grandis using RAPD markers. Genome, 39: 1051-1061.
43. Voorrips, R. 2002. MapChart: software for the graphical presentation of linkage maps and QTLs. J. Hered. 93: 77-78.
44. Weeden, N.F. 1994. Approaches to mapping in horticultural crops. In Plant genome analysis. Edited by P. Gresshoff. CRC Press, Boca Raton, Fla. pp. 57-68.
45. Williams, J., Kubelik, A., Livak, K., Rafalski, J., and Tingey, S. 1990. DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Res. 18: 6531-6535.
46. Wu, S., Wirthenshon, M., Collins, G., and Sedgley, M. 2000. Olive trees need the right pollinator. Olive Press Winter: 13-15.
47. Wu, S., Collins, G., and Sedgley, M. 2001. Optimizing olive seed germination. Olive Press Autumn: 26-27.
48. Wu, S.-B., Collins, G., and Sedgley, M. 2002. Sexual compatibility within and between olive cultivars. J. Hortic. Sci. Biotechnol. 77: 665-673.