메뉴 건너뛰기




Volumn 105, Issue 9, 2008, Pages 3521-3526

Transcriptome sequencing of malignant pleural mesothelioma tumors

Author keywords

Bioinformatics; DNA sequencing; Loss of heterozygosity; Lung cancer; Tumor mutations

Indexed keywords

TRANSCRIPTOME; ACTIVIN RECEPTOR 1; ACVR1 PROTEIN, HUMAN; APOPTOSIS REGULATORY PROTEIN; AVEN PROTEIN, HUMAN; CELL NUCLEUS ANTIGEN; DNA BINDING PROTEIN; KU ANTIGEN; MEMBRANE PROTEIN; PDZK1IP1 PROTEIN, HUMAN; RNA; SIGNAL TRANSDUCING ADAPTOR PROTEIN; TUMOR PROTEIN; UNCLASSIFIED DRUG;

EID: 42149162212     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.0712399105     Document Type: Article
Times cited : (135)

References (45)
  • 1
    • 33749993417 scopus 로고    scopus 로고
    • The consensus coding sequences of human breast and colorectal cancers
    • Sjoblom T, et al. (2006) The consensus coding sequences of human breast and colorectal cancers. Science 314:268-274.
    • (2006) Science , vol.314 , pp. 268-274
    • Sjoblom, T.1
  • 2
    • 33745260444 scopus 로고    scopus 로고
    • Somatic mutations in human cancer: Insights from resequencing the protein kinase gene family
    • Futreal PA, Wooster R, Stratton MR (2006) Somatic mutations in human cancer: Insights from resequencing the protein kinase gene family. Cold Spring Harbor Symp Quant Biol 70:43-49.
    • (2006) Cold Spring Harbor Symp Quant Biol , vol.70 , pp. 43-49
    • Futreal, P.A.1    Wooster, R.2    Stratton, M.R.3
  • 3
    • 33947101019 scopus 로고    scopus 로고
    • Patterns of somatic mutation in human cancer genomes
    • Greenman C, et al. (2007) Patterns of somatic mutation in human cancer genomes. Nature 446:153-158.
    • (2007) Nature , vol.446 , pp. 153-158
    • Greenman, C.1
  • 4
    • 0033555622 scopus 로고    scopus 로고
    • Comparative genomic hybridization and loss of heterozygosity analyses identify a common region of deletion at 15q11.1-15 in human malignant mesothelioma
    • Balsara BR, et al. (1999) Comparative genomic hybridization and loss of heterozygosity analyses identify a common region of deletion at 15q11.1-15 in human malignant mesothelioma. Cancer Res 59:450-454.
    • (1999) Cancer Res , vol.59 , pp. 450-454
    • Balsara, B.R.1
  • 5
    • 33847355994 scopus 로고    scopus 로고
    • Epigenetic inactivation of the chromosomal stability control genes BRCA1, BRCA2, and XRCC5 in non-small cell lung cancer
    • Lee M, et al. (2007) Epigenetic inactivation of the chromosomal stability control genes BRCA1, BRCA2, and XRCC5 in non-small cell lung cancer. Clin Cancer Res 3:832-838.
    • (2007) Clin Cancer Res , vol.3 , pp. 832-838
    • Lee, M.1
  • 6
    • 33847065486 scopus 로고    scopus 로고
    • The epigenomics of cancer
    • Jones PA, Baylin SB (2007) The epigenomics of cancer. Cell 128:683-692.
    • (2007) Cell , vol.128 , pp. 683-692
    • Jones, P.A.1    Baylin, S.B.2
  • 7
    • 33947188719 scopus 로고    scopus 로고
    • Cancer: Drivers and passengers
    • Haber DA, Settleman J (2007) Cancer: Drivers and passengers. Nature 446:145-456.
    • (2007) Nature , vol.446 , pp. 145-456
    • Haber, D.A.1    Settleman, J.2
  • 8
    • 0036178161 scopus 로고    scopus 로고
    • The epidemiology of mesothelioma
    • Britton M (2002) The epidemiology of mesothelioma. Semin Surg Oncol 29:18-25.
    • (2002) Semin Surg Oncol , vol.29 , pp. 18-25
    • Britton, M.1
  • 9
    • 33745684876 scopus 로고    scopus 로고
    • Molecular pathways in malignant pleural mesothelioma
    • Whitson BA, Kratzke RA (2006) Molecular pathways in malignant pleural mesothelioma. Cancer Lett 239:183-189.
    • (2006) Cancer Lett , vol.239 , pp. 183-189
    • Whitson, B.A.1    Kratzke, R.A.2
  • 10
    • 0037341569 scopus 로고    scopus 로고
    • Dynamin participates in focal extracellular matrix degradation by invasive cells
    • Baldassarre M, et al. (2003) Dynamin participates in focal extracellular matrix degradation by invasive cells. Mol Biol Cell 14:1074-1084.
    • (2003) Mol Biol Cell , vol.14 , pp. 1074-1084
    • Baldassarre, M.1
  • 11
    • 0034130516 scopus 로고    scopus 로고
    • Loss of heterozygosity analysis of 13q and 14q in human malignant mesothelioma
    • De Rienzo A, Jhanwar SC, Testa JR (2000) Loss of heterozygosity analysis of 13q and 14q in human malignant mesothelioma. Genes Chromosomes Cancer 28:337-341.
    • (2000) Genes Chromosomes Cancer , vol.28 , pp. 337-341
    • De Rienzo, A.1    Jhanwar, S.C.2    Testa, J.R.3
  • 12
    • 0028840381 scopus 로고
    • Genetic factors in the aetiology of malignant mesothelioma
    • Huncharek M (1995) Genetic factors in the aetiology of malignant mesothelioma. Eur J Cancer 31A:1741-1747.
    • (1995) Eur J Cancer , vol.31 A , pp. 1741-1747
    • Huncharek, M.1
  • 13
    • 33748444562 scopus 로고    scopus 로고
    • Cytogenetic and molecular genetic changes in malignant mesothelioma
    • Musti M, et al. (2006) Cytogenetic and molecular genetic changes in malignant mesothelioma. Cancer Genet Cytogenet 170:9-15.
    • (2006) Cancer Genet Cytogenet , vol.170 , pp. 9-15
    • Musti, M.1
  • 14
    • 0036726037 scopus 로고    scopus 로고
    • Concurrent LOH at multiple loci in human malignant mesothelioma with preferential loss of NF2 gene region
    • Pylkkanen L, et al. (2002) Concurrent LOH at multiple loci in human malignant mesothelioma with preferential loss of NF2 gene region. Oncol Rep 9:955-959.
    • (2002) Oncol Rep , vol.9 , pp. 955-959
    • Pylkkanen, L.1
  • 15
    • 33745892099 scopus 로고    scopus 로고
    • TNF-α inhibits asbestos-induced cytotoxicity via a NF-κB-dependent pathway, a possible mechanism for asbestos-induced oncogenesis
    • Yang H, et al. (2006) TNF-α inhibits asbestos-induced cytotoxicity via a NF-κB-dependent pathway, a possible mechanism for asbestos-induced oncogenesis. Proc Natl Acad Sci USA 103:10397-10402.
    • (2006) Proc Natl Acad Sci USA , vol.103 , pp. 10397-10402
    • Yang, H.1
  • 16
    • 0036309455 scopus 로고    scopus 로고
    • Inhibitor of apoptosis protein-1 promotes tumor cell survival in mesothelioma
    • Gordon GJ, et al. (2002) Inhibitor of apoptosis protein-1 promotes tumor cell survival in mesothelioma. Carcinogenesis 23:1017-1024.
    • (2002) Carcinogenesis , vol.23 , pp. 1017-1024
    • Gordon, G.J.1
  • 17
    • 33847401904 scopus 로고    scopus 로고
    • Inhibitor of apoptosis proteins are regulated by tumor necrosis factor-alpha in malignant pleural mesothelioma
    • Gordon GJ, et al. (2007) Inhibitor of apoptosis proteins are regulated by tumor necrosis factor-alpha in malignant pleural mesothelioma. J Pathol 211:439-446.
    • (2007) J Pathol , vol.211 , pp. 439-446
    • Gordon, G.J.1
  • 18
    • 24044455869 scopus 로고    scopus 로고
    • Genome sequencing in microfabricated high-density picolitre reactors
    • Margulies M, et al. (2005) Genome sequencing in microfabricated high-density picolitre reactors. Nature 437:376-380.
    • (2005) Nature , vol.437 , pp. 376-380
    • Margulies, M.1
  • 19
    • 33751077282 scopus 로고    scopus 로고
    • Analysis of one million base pairs of Neanderthal DNA
    • Green RE, et al. (2006) Analysis of one million base pairs of Neanderthal DNA. Nature 444:330-336.
    • (2006) Nature , vol.444 , pp. 330-336
    • Green, R.E.1
  • 20
    • 44249089690 scopus 로고    scopus 로고
    • Microaliquoting: A technique for precision histologic annotation and cell content optimization of frozen tissue specimens
    • Richards WG, et al. (2007) Microaliquoting: A technique for precision histologic annotation and cell content optimization of frozen tissue specimens. Biotech Histochem 1-9.
    • (2007) Biotech Histochem , pp. 1-9
    • Richards, W.G.1
  • 21
    • 22244475458 scopus 로고    scopus 로고
    • An atlas of human gene expression from massively parallel signature sequencing (MPSS)
    • Jongeneel CV, et al. (2005) An atlas of human gene expression from massively parallel signature sequencing (MPSS). Genome Res 15:1007-1014.
    • (2005) Genome Res , vol.15 , pp. 1007-1014
    • Jongeneel, C.V.1
  • 22
    • 0036735386 scopus 로고    scopus 로고
    • Translation of microarray data into clinically relevant cancer diagnostic tests using gene expression ratios in lung cancer and mesothelioma
    • Gordon GJ, et al. (2002) Translation of microarray data into clinically relevant cancer diagnostic tests using gene expression ratios in lung cancer and mesothelioma. Cancer Res 62:4963-4967.
    • (2002) Cancer Res , vol.62 , pp. 4963-4967
    • Gordon, G.J.1
  • 23
    • 21144456382 scopus 로고    scopus 로고
    • Identification of novel candidate oncogenes and tumor suppressors in malignant pleural mesothelioma using large-scale transcriptional profiling
    • Gordon GJ, et al. (2005) Identification of novel candidate oncogenes and tumor suppressors in malignant pleural mesothelioma using large-scale transcriptional profiling. Am J Pathol 166:1827-1840.
    • (2005) Am J Pathol , vol.166 , pp. 1827-1840
    • Gordon, G.J.1
  • 24
    • 33748948902 scopus 로고    scopus 로고
    • Altered promoter usage characterizes monoallelic transcription arising with ERBB2 amplification in human breast cancers
    • Benz CC, et al. (2006) Altered promoter usage characterizes monoallelic transcription arising with ERBB2 amplification in human breast cancers. Genes Chromosomes Cancer 45:983-994.
    • (2006) Genes Chromosomes Cancer , vol.45 , pp. 983-994
    • Benz, C.C.1
  • 25
    • 33751329250 scopus 로고    scopus 로고
    • Global variation in copy number in the human genome
    • Redon R, et al. (2006) Global variation in copy number in the human genome. Nature 444:444-454.
    • (2006) Nature , vol.444 , pp. 444-454
    • Redon, R.1
  • 26
    • 36248980204 scopus 로고    scopus 로고
    • Characterizing the cancer genome in lung adenocarcinoma
    • Weir BA, et al. (2007) Characterizing the cancer genome in lung adenocarcinoma. Nature 450:893-898.
    • (2007) Nature , vol.450 , pp. 893-898
    • Weir, B.A.1
  • 27
    • 0035833552 scopus 로고    scopus 로고
    • Structure of the Ku heterodimer bound to DNA, its implications for double-strand break repair
    • Walker JR, Corpina RA, Goldberg J (2001) Structure of the Ku heterodimer bound to DNA, its implications for double-strand break repair. Nature 412:607-614.
    • (2001) Nature , vol.412 , pp. 607-614
    • Walker, J.R.1    Corpina, R.A.2    Goldberg, J.3
  • 28
    • 33846650692 scopus 로고    scopus 로고
    • Distinguishing cancer-associated missense mutations from common polymorphisms
    • Kaminker JS, et al. (2007) Distinguishing cancer-associated missense mutations from common polymorphisms. Cancer Res 67:465-473.
    • (2007) Cancer Res , vol.67 , pp. 465-473
    • Kaminker, J.S.1
  • 29
    • 2542482495 scopus 로고    scopus 로고
    • Hsp90-binding immunophilins link p53 to dynein during p53 transport to the nucleus
    • Galigniana MD, Harrell JM, O'Hagen HM, Ljungman M, Pratt WB (2004) Hsp90-binding immunophilins link p53 to dynein during p53 transport to the nucleus. J Biol Chem 279:22483-22489.
    • (2004) J Biol Chem , vol.279 , pp. 22483-22489
    • Galigniana, M.D.1    Harrell, J.M.2    O'Hagen, H.M.3    Ljungman, M.4    Pratt, W.B.5
  • 30
    • 0028871496 scopus 로고
    • Identification of a novel gene, selectively up-regulated in human carcinomas, using the differential display technique
    • Kocher O, Cheresh P, Brown LF, Lee SW (1995) Identification of a novel gene, selectively up-regulated in human carcinomas, using the differential display technique. Clin Cancer Res 1:1209-1215.
    • (1995) Clin Cancer Res , vol.1 , pp. 1209-1215
    • Kocher, O.1    Cheresh, P.2    Brown, L.F.3    Lee, S.W.4
  • 31
    • 0030017442 scopus 로고    scopus 로고
    • Identification and partial characterization of a novel membrane-associated protein (MAP17) up-regulated in human carcinomas and modulating cell replication and tumor growth
    • Kocher O, Cheresh P, Lee SW (1996) Identification and partial characterization of a novel membrane-associated protein (MAP17) up-regulated in human carcinomas and modulating cell replication and tumor growth. Am J Pathol 149:493-500.
    • (1996) Am J Pathol , vol.149 , pp. 493-500
    • Kocher, O.1    Cheresh, P.2    Lee, S.W.3
  • 32
    • 0032884024 scopus 로고    scopus 로고
    • PDZK1, a novel PDZ domain-containing protein up-regulated in carcinomas and mapped to chromosome 1q21, interacts with cMOAT (MRP2), the multidrug resistance-associated protein
    • Kocher O, et al. (1999) PDZK1, a novel PDZ domain-containing protein up-regulated in carcinomas and mapped to chromosome 1q21, interacts with cMOAT (MRP2), the multidrug resistance-associated protein. Lab Invest 79:1161-1170.
    • (1999) Lab Invest , vol.79 , pp. 1161-1170
    • Kocher, O.1
  • 33
    • 0034980983 scopus 로고    scopus 로고
    • Colorectal carcinogenesis is associated with stromal expression of COL11A1 and COL5A2
    • Fischer H, Stenling R, Rubio C, Lindblom A (2001) Colorectal carcinogenesis is associated with stromal expression of COL11A1 and COL5A2. Carcinogenesis 22:875-878.
    • (2001) Carcinogenesis , vol.22 , pp. 875-878
    • Fischer, H.1    Stenling, R.2    Rubio, C.3    Lindblom, A.4
  • 34
    • 11144255821 scopus 로고    scopus 로고
    • Type V collagen regulates the expression of apoptotic and stress response genes by breast cancer cells
    • Luparello C, Sirchia R (2005) Type V collagen regulates the expression of apoptotic and stress response genes by breast cancer cells. J Cell Physiol 202:411-421.
    • (2005) J Cell Physiol , vol.202 , pp. 411-421
    • Luparello, C.1    Sirchia, R.2
  • 35
    • 33751182665 scopus 로고    scopus 로고
    • Proteomic analysis of mitochondria-to-nucleus retrograde response in human cancer
    • Kulawiec M, et al. (2006) Proteomic analysis of mitochondria-to-nucleus retrograde response in human cancer. Cancer Biol Ther 5:967-975.
    • (2006) Cancer Biol Ther , vol.5 , pp. 967-975
    • Kulawiec, M.1
  • 36
    • 0032932842 scopus 로고    scopus 로고
    • Identification, molecular cloning, and characterization of subunit 11 of the human 26S proteasome
    • Hoffman L, Gorbea C, Rechsteiner M (1999) Identification, molecular cloning, and characterization of subunit 11 of the human 26S proteasome. FEBS Lett 449:88-92.
    • (1999) FEBS Lett , vol.449 , pp. 88-92
    • Hoffman, L.1    Gorbea, C.2    Rechsteiner, M.3
  • 37
    • 2342613652 scopus 로고    scopus 로고
    • The proteosome: A suitable antineoplastic target
    • Adams J (2004) The proteosome: A suitable antineoplastic target. Nat Rev Cancer 4:349-360.
    • (2004) Nat Rev Cancer , vol.4 , pp. 349-360
    • Adams, J.1
  • 38
    • 18544366104 scopus 로고    scopus 로고
    • Application of cDNA microarrays to generate a molecular taxonomy capable of distinguishing between colon cancer and normal colon
    • Zou TT, et al. (2002) Application of cDNA microarrays to generate a molecular taxonomy capable of distinguishing between colon cancer and normal colon. Oncogene 21:4855-4862.
    • (2002) Oncogene , vol.21 , pp. 4855-4862
    • Zou, T.T.1
  • 39
    • 0033635266 scopus 로고    scopus 로고
    • Aven, a novel inhibitor of caspase activation, binds Bcl-xL and Apaf-1
    • Chau BN, Cheng EH, Kerr DA, Hardwick JM (2000) Aven, a novel inhibitor of caspase activation, binds Bcl-xL and Apaf-1. Mol Cell 6:31-40.
    • (2000) Mol Cell , vol.6 , pp. 31-40
    • Chau, B.N.1    Cheng, E.H.2    Kerr, D.A.3    Hardwick, J.M.4
  • 40
    • 33847372487 scopus 로고    scopus 로고
    • Expression patterns of inhibitor of apoptosis proteins in malignant pleural mesothelioma
    • Gordon GJ (2007) Expression patterns of inhibitor of apoptosis proteins in malignant pleural mesothelioma. J Pathol 211:447-454.
    • (2007) J Pathol , vol.211 , pp. 447-454
    • Gordon, G.J.1
  • 41
    • 0042702002 scopus 로고    scopus 로고
    • Survivin and aven: Two distinct antiapoptotic signals in acute leukemias
    • Paydas S, et al. (2003) Survivin and aven: Two distinct antiapoptotic signals in acute leukemias. Ann Oncol 14:2045-2050.
    • (2003) Ann Oncol , vol.14 , pp. 2045-2050
    • Paydas, S.1
  • 42
    • 27744537023 scopus 로고    scopus 로고
    • High incidence of skewed X chromosome inactivation in young patients with familial non-BRCA1/BRCA2 breast cancer
    • Kristiansen M, et al. (2005) High incidence of skewed X chromosome inactivation in young patients with familial non-BRCA1/BRCA2 breast cancer. J Med Genet 42:877-880.
    • (2005) J Med Genet , vol.42 , pp. 877-880
    • Kristiansen, M.1
  • 43
    • 39049196007 scopus 로고    scopus 로고
    • Skewed X chromosome inactivation of blood cells is associated with early development of lung cancer in females
    • Li G, et al. (2006) Skewed X chromosome inactivation of blood cells is associated with early development of lung cancer in females. Oncol Rep 16:859-864.
    • (2006) Oncol Rep , vol.16 , pp. 859-864
    • Li, G.1
  • 45
    • 23844491284 scopus 로고    scopus 로고
    • Identification of RNA editing sites in the SNP database
    • Eisenberg E, et al. (2005) Identification of RNA editing sites in the SNP database. Nucleic Acids Res 33:4612-4617.
    • (2005) Nucleic Acids Res , vol.33 , pp. 4612-4617
    • Eisenberg, E.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.