메뉴 건너뛰기




Volumn 22, Issue 1, 2015, Pages 1-11

Early and delayed long-term transcriptional changes and short-term transient responses during cold acclimation in olive leaves

Author keywords

Cold stress; Olea europaea; Olive; Transcriptomics

Indexed keywords

ACYL COENZYME A DESATURASE; MESSENGER RNA; TRANSCRIPTION FACTOR; TRANSCRIPTOME; WAX;

EID: 84938948139     PISSN: 13402838     EISSN: 17561663     Source Type: Journal    
DOI: 10.1093/dnares/dsu033     Document Type: Article
Times cited : (48)

References (47)
  • 1
    • 0344927929 scopus 로고    scopus 로고
    • Low-temperature sensing in olive tree: Calcium signaling and cold acclimation
    • D'Angeli, S., Malhó, R. and Altamura, M.M. 2003, Low-temperature sensing in olive tree: calcium signaling and cold acclimation, Plant Sci., 165, 1303-13.
    • (2003) Plant Sci. , vol.165 , pp. 1303-1313
    • D'Angeli, S.1    Malhó, R.2    Altamura, M.M.3
  • 2
    • 33645105776 scopus 로고    scopus 로고
    • Gene regulation during cold acclimation in plants
    • Chinnusamy, V., Zhu, J. and Zhu, J.-K. 2006, Gene regulation during cold acclimation in plants, Physiol. Plantarum, 126, 52-61.
    • (2006) Physiol. Plantarum , vol.126 , pp. 52-61
    • Chinnusamy, V.1    Zhu, J.2    Zhu, J.-K.3
  • 3
    • 16644398573 scopus 로고    scopus 로고
    • Exploring the temperature-stress metabolome of Arabidopsis
    • Kaplan, F., Kopka, J., Haskell, D.W., et al. 2004, Exploring the temperature-stress metabolome of Arabidopsis, Plant Physiol., 136, 4159-68.
    • (2004) Plant Physiol. , vol.136 , pp. 4159-4168
    • Kaplan, F.1    Kopka, J.2    Haskell, D.W.3
  • 4
    • 0033801589 scopus 로고    scopus 로고
    • Early steps in cold sensing by plant cells: The role of actin cytoskeleton and membrane fluidity
    • Örvar, B.L., Sangwan, V., Omann, F. and Dhindsa, R. 2000, Early steps in cold sensing by plant cells: the role of actin cytoskeleton and membrane fluidity, Plant J., 23, 785-94.
    • (2000) Plant J. , vol.23 , pp. 785-794
    • Örvar, B.L.1    Sangwan, V.2    Omann, F.3    Dhindsa, R.4
  • 6
    • 77953184082 scopus 로고    scopus 로고
    • Calcium signals: The lead currency of plant information processing
    • Kudla, J., Batistic, O. and Hashimoto, K. 2010, Calcium signals: the lead currency of plant information processing, Plant Cell, 22, 541-63.
    • (2010) Plant Cell , vol.22 , pp. 541-563
    • Kudla, J.1    Batistic, O.2    Hashimoto, K.3
  • 7
    • 0031851152 scopus 로고    scopus 로고
    • Dissecting the roles of osmolyte accumulation during stress
    • Hare, P.D., Cress, W.A. and Van Staden, J. 1998, Dissecting the roles of osmolyte accumulation during stress, Plant Cell Environ., 21, 535-53.
    • (1998) Plant Cell Environ. , vol.21 , pp. 535-553
    • Hare, P.D.1    Cress, W.A.2    Van Staden, J.3
  • 8
    • 33645099217 scopus 로고    scopus 로고
    • Profiling lipid changes in plant response to low temperatures
    • Wang, X., Li, W., Li, M. and Welti, R. 2006, Profiling lipid changes in plant response to low temperatures, Physiol. Plantarum, 126, 90-6.
    • (2006) Physiol. Plantarum , vol.126 , pp. 90-96
    • Wang, X.1    Li, W.2    Li, M.3    Welti, R.4
  • 9
    • 50649084994 scopus 로고    scopus 로고
    • Glycinbetaine: An effective protectant against abiotic stress in plants
    • Chen, T.H. and Murata, N. 2008, Glycinbetaine: an effective protectant against abiotic stress in plants, Trends Plant Sci., 13, 499-505.
    • (2008) Trends Plant Sci. , vol.13 , pp. 499-505
    • Chen, T.H.1    Murata, N.2
  • 10
    • 49449094591 scopus 로고    scopus 로고
    • Arabidopsis transcriptome analysis under drought, cold, high-salinity and ABA treatment conditions using a tiling array
    • Matsui, A., Ishida, J., Morosawa, T., et al. 2008, Arabidopsis transcriptome analysis under drought, cold, high-salinity and ABA treatment conditions using a tiling array, Plant Cell Physiol., 49, 1135-49.
    • (2008) Plant Cell Physiol. , vol.49 , pp. 1135-1149
    • Matsui, A.1    Ishida, J.2    Morosawa, T.3
  • 11
    • 66949124248 scopus 로고    scopus 로고
    • Stress-induced changes in the Arabidopsis thaliana transcriptome analyzed using whole-genome tiling arrays
    • Zeller, G., Henz, S.R., Widmer, C.K., et al. 2009, Stress-induced changes in the Arabidopsis thaliana transcriptome analyzed using whole-genome tiling arrays, Plant J., 58, 1068-82.
    • (2009) Plant J. , vol.58 , pp. 1068-1082
    • Zeller, G.1    Henz, S.R.2    Widmer, C.K.3
  • 12
    • 33645974276 scopus 로고    scopus 로고
    • The Arabidopsis cold-responsive transcriptome and its regulation by ICE1
    • Lee, B.H., Henderson, D.A. and Zhu, J.K. 2005, The Arabidopsis cold-responsive transcriptome and its regulation by ICE1, Plant Cell, 17, 3155-75.
    • (2005) Plant Cell , vol.17 , pp. 3155-3175
    • Lee, B.H.1    Henderson, D.A.2    Zhu, J.K.3
  • 13
    • 0032144961 scopus 로고    scopus 로고
    • Two transcription factors, DREB1 and DREB2, with an EREBP/AP2 DNA binding domain separate two cellular signal transduction pathways in drought- and low-temperature-responsive gene expression, respectively, in Arabidopsis
    • Liu, Q., Kasuga, M., Sakuma, Y., et al. 1998, Two transcription factors, DREB1 and DREB2, with an EREBP/AP2 DNA binding domain separate two cellular signal transduction pathways in drought- and low-temperature-responsive gene expression, respectively, in Arabidopsis, Plant Cell, 10, 1391-406.
    • (1998) Plant Cell , vol.10 , pp. 1391-1406
    • Liu, Q.1    Kasuga, M.2    Sakuma, Y.3
  • 14
    • 0032213180 scopus 로고    scopus 로고
    • Low temperature regulation of the Arabidopsis CBF family of AP2 transcriptional activators as an early step in cold-induced COR gene expression
    • Gilmour, S.J., Zarka, D.G., Stockinger, E.J., Salazar, M.P., Houghton, J.M. and Thomashow, M.F. 1998, Low temperature regulation of the Arabidopsis CBF family of AP2 transcriptional activators as an early step in cold-induced COR gene expression, Plant J., 16, 433-42.
    • (1998) Plant J. , vol.16 , pp. 433-442
    • Gilmour, S.J.1    Zarka, D.G.2    Stockinger, E.J.3    Salazar, M.P.4    Houghton, J.M.5    Thomashow, M.F.6
  • 15
    • 0033080470 scopus 로고    scopus 로고
    • The Arabidopsis CBF gene family is composed of three genes encoding AP2 domain-containing proteins whose expression is regulated by low temperature but not by abscisic acid or dehydration
    • Medina, J., Bargues, M., Terol, J., Perez-Alonso, M. and Salinas, J. 1999, The Arabidopsis CBF gene family is composed of three genes encoding AP2 domain-containing proteins whose expression is regulated by low temperature but not by abscisic acid or dehydration, Plant Physiol., 119, 463-70.
    • (1999) Plant Physiol. , vol.119 , pp. 463-470
    • Medina, J.1    Bargues, M.2    Terol, J.3    Perez-Alonso, M.4    Salinas, J.5
  • 16
    • 0346120018 scopus 로고    scopus 로고
    • Mutations in the Ca2+/H+ transporter CAX1 increase CBF/DREB1 expression and the cold-acclimation response in Arabidopsis
    • Catala, R., Santos, E., Alonso, J.M., Ecker, J.R., Martinez-Zapater, J.M. and Salinas, J. 2003, Mutations in the Ca2+/H+ transporter CAX1 increase CBF/DREB1 expression and the cold-acclimation response in Arabidopsis, Plant Cell, 15, 2940-51.
    • (2003) Plant Cell , vol.15 , pp. 2940-2951
    • Catala, R.1    Santos, E.2    Alonso, J.M.3    Ecker, J.R.4    Martinez-Zapater, J.M.5    Salinas, J.6
  • 17
    • 79960279363 scopus 로고    scopus 로고
    • Cold affects the transcription of fatty acid desaturases and oil quality in the fruit of Olea europaea L. genotypes with different cold hardiness
    • Matteucci, M., D'Angeli, S., Errico, S., Lamanna, R., Perrotta, G. and Altamura, M.M. 2011, Cold affects the transcription of fatty acid desaturases and oil quality in the fruit of Olea europaea L. genotypes with different cold hardiness, J. Exp. Bot., 62, 3403-20.
    • (2011) J. Exp. Bot. , vol.62 , pp. 3403-3420
    • Matteucci, M.1    D'Angeli, S.2    Errico, S.3    Lamanna, R.4    Perrotta, G.5    Altamura, M.M.6
  • 18
    • 84870243709 scopus 로고    scopus 로고
    • Cold perception and gene expression differ in Olea europaea seed coat and embryo during drupe cold acclimation
    • D'Angeli, S., Falasca, G., Matteucci, M. and Altamura, M.M. 2013, Cold perception and gene expression differ in Olea europaea seed coat and embryo during drupe cold acclimation, New Phytol., 197, 123-38.
    • (2013) New Phytol. , vol.197 , pp. 123-138
    • D'Angeli, S.1    Falasca, G.2    Matteucci, M.3    Altamura, M.M.4
  • 19
    • 79955855553 scopus 로고    scopus 로고
    • Analysis of short-term changes in the Arabidopsis thaliana glycerolipidome in response to temperature and light
    • Burgos, A., Szymanski, J., Seiwert, B., et al. 2011, Analysis of short-term changes in the Arabidopsis thaliana glycerolipidome in response to temperature and light, Plant J., 66, 656-68.
    • (2011) Plant J. , vol.66 , pp. 656-668
    • Burgos, A.1    Szymanski, J.2    Seiwert, B.3
  • 20
    • 80053234593 scopus 로고    scopus 로고
    • Homeostasis of plasma membrane viscosity in fluctuating temperatures
    • Martinière, A., Shvedunova, M., Thomson, A.J.W., et al. 2011, Homeostasis of plasma membrane viscosity in fluctuating temperatures, New Phytol., 192, 328-37.
    • (2011) New Phytol. , vol.192 , pp. 328-337
    • Martinière, A.1    Shvedunova, M.2    Thomson, A.J.W.3
  • 21
    • 79958770261 scopus 로고    scopus 로고
    • Verticillium wilt of olive: A case study to implement an integrated strategy to control a soil-borne pathogen
    • López-Escudero, F.J. and Mercado-Blanco, J. 2011, Verticillium wilt of olive: a case study to implement an integrated strategy to control a soil-borne pathogen, Plant Soil, 344, 1-50.
    • (2011) Plant Soil , vol.344 , pp. 1-50
    • López-Escudero, F.J.1    Mercado-Blanco, J.2
  • 23
    • 84856468953 scopus 로고    scopus 로고
    • NGS QC Toolkit: A toolkit for quality control of next generation sequencing data
    • Patel, R.K. and Jain, M. 2012, NGS QC Toolkit: a toolkit for quality control of next generation sequencing data, PLos One, 7, e30619.
    • (2012) PLos One , vol.7
    • Patel, R.K.1    Jain, M.2
  • 24
    • 66449136667 scopus 로고    scopus 로고
    • ABySS: A parallel assembler for short read sequence data
    • Simpson, J.T., Wong, K., Jackman, S.D., et al. 2009, ABySS: a parallel assembler for short read sequence data, Genome Res., 19, 1117-23.
    • (2009) Genome Res. , vol.19 , pp. 1117-1123
    • Simpson, J.T.1    Wong, K.2    Jackman, S.D.3
  • 25
    • 70350664649 scopus 로고    scopus 로고
    • De novo transcriptome assembly with ABySS
    • Birol, I., Jackman, S.D., Nielsen, C.B., et al. 2009, De novo transcriptome assembly with ABySS, Bioinformatics, 25, 2872-7.
    • (2009) Bioinformatics , vol.25 , pp. 2872-2877
    • Birol, I.1    Jackman, S.D.2    Nielsen, C.B.3
  • 26
    • 84860485003 scopus 로고    scopus 로고
    • Optimizing de novo transcriptome assembly from short-read RNA-Seq data: A comparative study
    • Zhao, Q.-Y., Wang, Y., Kong, Y-M., et al. 2011, Optimizing de novo transcriptome assembly from short-read RNA-Seq data: a comparative study, BMC Bioinformatics, 12, S2.
    • (2011) BMC Bioinformatics , vol.12 , pp. S2
    • Zhao, Q.-Y.1    Wang, Y.2    Kong, Y.-M.3
  • 27
    • 84859210032 scopus 로고    scopus 로고
    • Fast gapped-read alignment with Bowtie 2
    • Langmead, B. and Salzberg, S.L. 2012, Fast gapped-read alignment with Bowtie 2, Nat. Methods, 9, 357-9.
    • (2012) Nat. Methods , vol.9 , pp. 357-359
    • Langmead, B.1    Salzberg, S.L.2
  • 28
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
    • Altschul, S.F., Madden, T.L., Schäffer, A.A., et al. 1997, Gapped BLAST and PSI-BLAST: a new generation of protein database search programs, Nucleic Acids Res., 25, 3389-402.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 3389-3402
    • Altschul, S.F.1    Madden, T.L.2    Schäffer, A.A.3
  • 29
    • 84880840905 scopus 로고    scopus 로고
    • Why assembling plant genome sequences is so challenging
    • Claros, M.G., Bautista, R., Guerrero-Fernández, D., et al. 2012, Why assembling plant genome sequences is so challenging, Biology, 1, 439-59.
    • (2012) Biology , vol.1 , pp. 439-459
    • Claros, M.G.1    Bautista, R.2    Guerrero-Fernández, D.3
  • 30
    • 84874483118 scopus 로고    scopus 로고
    • De novo assembly and functional annotation of the olive (Olea europaea) transcriptome
    • Muñoz-Mérida, A., González-Plaza, J.J., Cañada, A., et al. 2013, De novo assembly and functional annotation of the olive (Olea europaea) transcriptome, DNA Res., 20, 93-108.
    • (2013) DNA Res. , vol.20 , pp. 93-108
    • Muñoz-Mérida, A.1    González-Plaza, J.J.2    Cañada, A.3
  • 33
    • 24644503098 scopus 로고    scopus 로고
    • Blast2GO: A universal tool for annotation, visualization and analysis in functional genomics research
    • Conesa, A., Gotz, S., García-Gómez, J., Terol, J., Talon, M., et al. 2005, Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatics, 21, 3674-6.
    • (2005) Bioinformatics , vol.21 , pp. 3674-3676
    • Conesa, A.1    Gotz, S.2    García-Gómez, J.3    Terol, J.4    Talon, M.5
  • 34
    • 43949138227 scopus 로고    scopus 로고
    • Blast2GO: A comprehensive suite for functional analysis in plant genomics
    • Conesa, A. and Gotz, S. 2008, Blast2GO: a comprehensive suite for functional analysis in plant genomics, Int. J. Plant Genomics, 2008, 619832
    • (2008) Int. J. Plant Genomics , vol.2008
    • Conesa, A.1    Gotz, S.2
  • 35
    • 33644800656 scopus 로고    scopus 로고
    • Biological profiling of gene groups utilizing Gene Ontology
    • Bluthgen, N., Brand, K., Cajavec, B., et al. 2005, Biological profiling of gene groups utilizing Gene Ontology, Genome Informatics, 16, 106-15.
    • (2005) Genome Informatics , vol.16 , pp. 106-115
    • Bluthgen, N.1    Brand, K.2    Cajavec, B.3
  • 36
    • 84901455412 scopus 로고    scopus 로고
    • Genetic changes involved in the juvenile-to-adult transition in the shoot apex of Olea europaea L. occur years before the first flowering
    • García-López, M.C., Vidoy, I. and Jiménez-Ruiz, J. 2014, Genetic changes involved in the juvenile-to-adult transition in the shoot apex of Olea europaea L. occur years before the first flowering, Tree Genet. Genomes, 10, 585-603.
    • (2014) Tree Genet. Genomes , vol.10 , pp. 585-603
    • García-López, M.C.1    Vidoy, I.2    Jiménez-Ruiz, J.3
  • 37
    • 84856585935 scopus 로고    scopus 로고
    • Phytozome: A comparative platform for green plant genomics
    • Goodstein, D.M., Shu, S., Howson, R., et al. 2012, Phytozome: a comparative platform for green plant genomics, Nucleic Acids Res., 40, D1178-86.
    • (2012) Nucleic Acids Res. , vol.40 , pp. D1178-D1186
    • Goodstein, D.M.1    Shu, S.2    Howson, R.3
  • 38
    • 78651327629 scopus 로고    scopus 로고
    • The Sol Genomics Network (solgenomics. Net): Growing tomatoes using Perl
    • Bombarely, A., Menda, N., Tecle, I.Y., et al. 2011, The Sol Genomics Network (solgenomics. net): growing tomatoes using Perl, Nucleic Acids Res., 39(Suppl. 1), D1149-55.
    • (2011) Nucleic Acids Res. , vol.39 , pp. D1149-D1155
    • Bombarely, A.1    Menda, N.2    Tecle, I.Y.3
  • 39
    • 34848886909 scopus 로고    scopus 로고
    • The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
    • French-Italian Public Consortium for Grapevine Genome Characterization. 2007, The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla, Nature, 449, 463-7.
    • (2007) Nature , vol.449 , pp. 463-467
  • 40
    • 84872064617 scopus 로고    scopus 로고
    • The Eucalyptus grandis Genome Project: Genome and transcriptome resources for comparative analysis of woody plant biology
    • Myburg, A., Grattapaglia, D., Tuskan, G., et al. 2011, The Eucalyptus grandis Genome Project: genome and transcriptome resources for comparative analysis of woody plant biology, BMC Proceedings, 5(Suppl. 7), I20.
    • (2011) BMC Proceedings , vol.5 , pp. I20
    • Myburg, A.1    Grattapaglia, D.2    Tuskan, G.3
  • 41
    • 70349662156 scopus 로고    scopus 로고
    • Comparative 454 pyrosequencing of transcripts from two olive genotypes during fruit development
    • Alagna, F., D'Agostino, N., Torchia, L., et al. 2009, Comparative 454 pyrosequencing of transcripts from two olive genotypes during fruit development, BMC Genomics, 10, 399.
    • (2009) BMC Genomics , vol.10 , pp. 399
    • Alagna, F.1    D'Agostino, N.2    Torchia, L.3
  • 42
    • 84858057451 scopus 로고    scopus 로고
    • Cutoffs and k-mers: Implications from a transcriptome study in allopolyploid plants
    • Gruenheit, N., Deusch, O., Esser, C., et al. 2012, Cutoffs and k-mers: implications from a transcriptome study in allopolyploid plants, BMC Genomics, 13, 92.
    • (2012) BMC Genomics , vol.13 , pp. 92
    • Gruenheit, N.1    Deusch, O.2    Esser, C.3
  • 43
    • 63849091245 scopus 로고    scopus 로고
    • Next-generation DNA sequencing of paired-end tags (PET) for transcriptome and genome analyses
    • Fullwood, M.J., Wei, C.L., Liu, E.T. and Ruan, Y. 2009, Next-generation DNA sequencing of paired-end tags (PET) for transcriptome and genome analyses, Genome Res., 19, 521-32.
    • (2009) Genome Res. , vol.19 , pp. 521-532
    • Fullwood, M.J.1    Wei, C.L.2    Liu, E.T.3    Ruan, Y.4
  • 44
    • 42549098672 scopus 로고    scopus 로고
    • Fatty acid unsaturation, mobilization, and regulation in the response of plants to stress
    • Upchurch, R.G. 2008, Fatty acid unsaturation, mobilization, and regulation in the response of plants to stress, Biotechnol. Lett., 30, 967-77.
    • (2008) Biotechnol. Lett. , vol.30 , pp. 967-977
    • Upchurch, R.G.1
  • 45
    • 78951478221 scopus 로고    scopus 로고
    • Effect of different environmental stresses on the expression of oleate desaturase genes and fatty acid composition in olive fruit
    • Hernández, M.L., Padilla, M.N., Sicardo, M.D., Mancha, M. and Martínez-Rivas, J.M. 2011, Effect of different environmental stresses on the expression of oleate desaturase genes and fatty acid composition in olive fruit, Phytochem., 72, 178-87.
    • (2011) Phytochem. , vol.72 , pp. 178-187
    • Hernández, M.L.1    Padilla, M.N.2    Sicardo, M.D.3    Mancha, M.4    Martínez-Rivas, J.M.5
  • 46
    • 80052272064 scopus 로고    scopus 로고
    • High-density kinetic analysis of the metabolomic and transcriptomic response of Arabidopsis to eight environmental conditions
    • Caldana, C., Degenkolbe, T., Cuadros-Inostroza, A., et al. 2011, High-density kinetic analysis of the metabolomic and transcriptomic response of Arabidopsis to eight environmental conditions, Plant J., 67, 869-84.
    • (2011) Plant J. , vol.67 , pp. 869-884
    • Caldana, C.1    Degenkolbe, T.2    Cuadros-Inostroza, A.3
  • 47
    • 84865069713 scopus 로고    scopus 로고
    • Comparative transcriptome profiling of chilling stress responsiveness in two contrasting rice genotypes
    • Zhang, T., Zhao, X., Wang, W., et al. 2012, Comparative transcriptome profiling of chilling stress responsiveness in two contrasting rice genotypes, PLos One, 7, e43274.
    • (2012) PLos One , vol.7
    • Zhang, T.1    Zhao, X.2    Wang, W.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.