-
1
-
-
84878885712
-
What's in a name? Why these proteins are intrinsically disordered
-
Dunker AK, Babu MM, Barbar E, Blackledge M, Bondos SE, et al. 2013. What's in a name? Why these proteins are intrinsically disordered. Intrinsically Disord. Proteins 1:e24157
-
(2013)
Intrinsically Disord. Proteins
, vol.1
-
-
Dunker, A.K.1
Babu, M.M.2
Barbar, E.3
Blackledge, M.4
Bondos, S.E.5
-
2
-
-
47649121056
-
Classification of proteins according to conformation
-
Jirgensons B. 1966. Classification of proteins according to conformation. Makromol. Chem. 91:74-86
-
(1966)
Makromol. Chem
, vol.91
, pp. 74-86
-
-
Jirgensons, B.1
-
3
-
-
0015217648
-
A high resolution structure of an inhibitor complex of the extracellular nuclease of Staphylococcus aureus i Experimental procedures and chain tracing
-
Arnone A, Bier CJ, Cotton FA, Day VW, Hazen EE Jr, et al. 1971. A high resolution structure of an inhibitor complex of the extracellular nuclease of Staphylococcus aureus. I. Experimental procedures and chain tracing. J. Biol. Chem. 246:2302-16
-
(1971)
J. Biol. Chem
, vol.246
, pp. 2302-2316
-
-
Arnone, A.1
Bier, C.J.2
Cotton, F.A.3
Day, V.W.4
Hazen Jr., E.E.5
-
4
-
-
25144472591
-
Showing your ID: Intrinsic disorder as an IDfor recognition, regulation and cell signaling
-
UverskyVN, OldfieldCJ, Dunker AK. 2005. Showing your ID: intrinsic disorder as an IDfor recognition, regulation and cell signaling. J. Mol. Recognit. 18:343-84
-
(2005)
J. Mol. Recognit
, vol.18
, pp. 343-384
-
-
Uversky, V.N.1
Oldfield, C.J.2
Dunker, A.K.3
-
5
-
-
0032749078
-
Intrinsically unstructured proteins: Re-Assessing the protein structure-function paradigm
-
Wright PE, Dyson HJ. 1999. Intrinsically unstructured proteins: re-Assessing the protein structure-function paradigm. J. Mol. Biol. 293:321-31
-
(1999)
J. Mol. Biol
, vol.293
, pp. 321-331
-
-
Wright, P.E.1
Dyson, H.J.2
-
7
-
-
0026562948
-
Glycogen phosphorylase: Control by phosphorylation and allosteric effectors
-
Johnson LN. 1992. Glycogen phosphorylase: control by phosphorylation and allosteric effectors. FASEB J. 6:2274-82
-
(1992)
FASEB J
, vol.6
, pp. 2274-2282
-
-
Johnson, L.N.1
-
8
-
-
84879161353
-
The roles of conditional disorder in redox proteins
-
Reichmann D, Jakob U. 2013. The roles of conditional disorder in redox proteins. Curr. Opin. Struct. Biol. 23:436-42
-
(2013)
Curr. Opin. Struct. Biol
, vol.23
, pp. 436-442
-
-
Reichmann, D.1
Jakob, U.2
-
9
-
-
0026482958
-
NMR structure determination reveals that the homeodomain is connected through a flexible linker to the main body in the Drosophila antennapedia protein
-
Qian YQ, Otting G, Furukubo-Tokunaga K, Affolter M, GehringWJ, Wüthrich K. 1992. NMR structure determination reveals that the homeodomain is connected through a flexible linker to the main body in the Drosophila antennapedia protein. Proc. Natl. Acad. Sci. USA 89:10738-42
-
(1992)
Proc. Natl. Acad. Sci. USA
, vol.89
, pp. 10738-10742
-
-
Qian, Y.Q.1
Otting, G.2
Furukubo-Tokunaga, K.3
Affolter, M.4
Gehring, W.J.5
Wüthrich, K.6
-
10
-
-
0032559640
-
Titin extensibility in situ: Entropic elasticity of permanently folded and permanently unfolded molecular segments
-
Trombitás K, GreaserM,Labeit S, Jin J-P, Kellermayer M, et al. 1998. Titin extensibility in situ: entropic elasticity of permanently folded and permanently unfolded molecular segments. J. Cell Biol. 140:853-59
-
(1998)
J. Cell Biol
, vol.140
, pp. 853-859
-
-
Trombitás, K.1
Greaser, M.2
Labeit, S.3
Jin, J.-P.4
Kellermayer, M.5
-
11
-
-
84859502161
-
Structural disorder and protein elasticity
-
ed. M Fuxreiter, P Tompa. New York Springer
-
Rauscher S, Pomés R. 2012. Structural disorder and protein elasticity. In Fuzziness, ed. M Fuxreiter, P Tompa, pp. 159-83. New York: Springer
-
(2012)
Fuzziness
, pp. 159-183
-
-
Rauscher, S.1
Pomés, R.2
-
12
-
-
0032147118
-
Functional protein domains from the thermally driven motion of polypeptide chains: A proposal
-
Hoh JH. 1998. Functional protein domains from the thermally driven motion of polypeptide chains: a proposal. Proteins 32:223-28
-
(1998)
Proteins
, vol.32
, pp. 223-228
-
-
Hoh, J.H.1
-
13
-
-
0030806303
-
Ligand-free form of human ?-fetoprotein: Evidence for the molten globule state
-
Uversky VN, Narizhneva NV, Ivanova TV, Kirkitadze MD, Tomashevski AY. 1997. Ligand-free form of human ?-fetoprotein: evidence for the molten globule state. FEBS Lett. 410:280-84
-
(1997)
FEBS Lett
, vol.410
, pp. 280-284
-
-
Uversky, V.N.1
Narizhneva, N.V.2
Ivanova, T.V.3
Kirkitadze, M.D.4
Tomashevski, A.Y.5
-
14
-
-
38849144628
-
NMR relaxation study of the complex formed betweenCBPand the activation domain of the nuclear hormone receptor coactivator ACTR
-
Ebert M-O, Bae S-H, Dyson HJ, Wright PE. 2008. NMR relaxation study of the complex formed betweenCBPand the activation domain of the nuclear hormone receptor coactivator ACTR. Biochemistry 47:1299-308
-
(2008)
Biochemistry
, vol.47
, pp. 1299-1308
-
-
Ebert, M.-O.1
Bae, S.-H.2
Dyson, H.J.3
Wright, P.E.4
-
15
-
-
0034867975
-
The protein trinity-linking function and disorder
-
Dunker AK, Obradović Z. 2001. The protein trinity-linking function and disorder. Nat. Biotechnol. 19:805-6
-
(2001)
Nat. Biotechnol
, vol.19
, pp. 805-806
-
-
Dunker, A.K.1
Obradović, Z.2
-
16
-
-
0020648531
-
Flexibility in tobacco mosaic virus
-
Holmes KC. 1983. Flexibility in tobacco mosaic virus. Ciba Found. Symp. 93:116-38
-
(1983)
Ciba Found. Symp
, vol.93
, pp. 116-138
-
-
Holmes, K.C.1
-
17
-
-
0035022941
-
Intrinsically disordered protein
-
Dunker AK, Lawson JD, Brown CJ, Williams RM, Romero P, et al. 2001. Intrinsically disordered protein. J. Mol. Graph. Model. 19:26-59
-
(2001)
J. Mol. Graph. Model
, vol.19
, pp. 26-59
-
-
Dunker, A.K.1
Lawson, J.D.2
Brown, C.J.3
Williams, R.M.4
Romero, P.5
-
18
-
-
33744814686
-
Alternative splicing in concert with protein intrinsic disorder enables increased functional diversity in multicellular organisms
-
Romero PR, Zaidi S, Fang YY, Uversky VN, Radivojac P, et al. 2006. Alternative splicing in concert with protein intrinsic disorder enables increased functional diversity in multicellular organisms. Proc. Natl. Acad. Sci. USA 103:8390-95
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 8390-8395
-
-
Romero, P.R.1
Zaidi, S.2
Fang, Y.Y.3
Uversky, V.N.4
Radivojac, P.5
-
20
-
-
84891464661
-
Correlation between posttranslational modification and intrinsic disorder in protein
-
Gao J, Xu D. 2012. Correlation between posttranslational modification and intrinsic disorder in protein. Pac. Symp. Biocomput. 1:94-103
-
(2012)
Pac. Symp. Biocomput
, vol.1
, pp. 94-103
-
-
Gao, J.1
Xu, D.2
-
21
-
-
70349737853
-
Overlapping genes produce proteins with unusual sequence properties and offer insight into de novo protein creation
-
Rancurel C, Khosravi M, Dunker AK, Romero PR, Karlin D. 2009. Overlapping genes produce proteins with unusual sequence properties and offer insight into de novo protein creation. J. Virol. 83:10719-36
-
(2009)
J. Virol
, vol.83
, pp. 10719-10736
-
-
Rancurel, C.1
Khosravi, M.2
Dunker, A.K.3
Romero, P.R.4
Karlin, D.5
-
22
-
-
77950421789
-
Dual coding in alternative reading frames correlates with intrinsic protein disorder
-
Kovacs E, Tompa P, Liliom K, Kalmar L. 2010. Dual coding in alternative reading frames correlates with intrinsic protein disorder. Proc. Natl. Acad. Sci. USA 107:5429-34
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 5429-5434
-
-
Kovacs, E.1
Tompa, P.2
Liliom, K.3
Kalmar, L.4
-
23
-
-
73549101052
-
Intrinsic structural disorder confers cellular viability on oncogenic fusion proteins
-
Hegyi H, Buday L, Tompa P. 2009. Intrinsic structural disorder confers cellular viability on oncogenic fusion proteins. PLoS Comput. Biol. 5:e1000552
-
(2009)
PLoS Comput. Biol
, vol.5
-
-
Hegyi, H.1
Buday, L.2
Tompa, P.3
-
24
-
-
84876290145
-
Long indels are disordered: A study of disorder and indels in homologous eukaryotic proteins
-
Light S, Sagit R, Ekman D, Elofsson A. 2013. Long indels are disordered: a study of disorder and indels in homologous eukaryotic proteins. Biochim. Biophys. Acta 1834:890-97
-
(2013)
Biochim. Biophys. Acta
, vol.1834
, pp. 890-897
-
-
Light, S.1
Sagit, R.2
Ekman, D.3
Elofsson, A.4
-
26
-
-
77952335311
-
Net charge per residue modulates conformational ensembles of intrinsically disordered proteins
-
Mao AH, Crick SL, Vitalis A, Chicoine CL, Pappu RV. 2010. Net charge per residue modulates conformational ensembles of intrinsically disordered proteins. Proc. Natl. Acad. Sci. USA 107:8183-88
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 8183-8188
-
-
Mao, A.H.1
Crick, S.L.2
Vitalis, A.3
Chicoine, C.L.4
Pappu, R.V.5
-
27
-
-
84882364963
-
Conformations of intrinsically disordered proteins are influenced by linear sequence distributions of oppositely charged residues
-
Das RK, Pappu RV. 2013. Conformations of intrinsically disordered proteins are influenced by linear sequence distributions of oppositely charged residues. Proc. Natl. Acad. Sci. USA 110:13392-97
-
(2013)
Proc. Natl. Acad. Sci. USA
, vol.110
, pp. 13392-13397
-
-
Das, R.K.1
Pappu, R.V.2
-
28
-
-
44949262123
-
Role of backbone-solvent interactions in determining conformational equilibria of intrinsically disordered proteins
-
TranHT,Mao A, Pappu RV. 2008. Role of backbone-solvent interactions in determining conformational equilibria of intrinsically disordered proteins. J. Am. Chem. Soc. 130:7380-92
-
(2008)
J. Am. Chem. Soc
, vol.130
, pp. 7380-7392
-
-
Tranhtmao, A.1
Pappu, R.V.2
-
29
-
-
33750934185
-
Fluorescence correlation spectroscopy shows that monomeric polyglutamine molecules form collapsed structures in aqueous solutions
-
Crick SL, Jayaraman M, Frieden C,Wetzel R, Pappu RV. 2006. Fluorescence correlation spectroscopy shows that monomeric polyglutamine molecules form collapsed structures in aqueous solutions. Proc. Natl. Acad. Sci. USA 103:16764-69
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 16764-16769
-
-
Crick, S.L.1
Jayaraman, M.2
Frieden Cwetzel, R.3
Pappu, R.V.4
-
30
-
-
0029924194
-
Further evidence on the equilibrium Pre-molten globule state: Fourstate guanidinium chloride-induced unfolding of carbonic anhydrase B at low temperature
-
Uversky VN, Ptitsyn OB. 1996. Further evidence on the equilibrium "pre-molten globule state": fourstate guanidinium chloride-induced unfolding of carbonic anhydrase B at low temperature. J. Mol. Biol. 255:215-28
-
(1996)
J. Mol. Biol
, vol.255
, pp. 215-228
-
-
Uversky, V.N.1
Ptitsyn, O.B.2
-
32
-
-
78149446241
-
A natively unfolded ?γ-crystallin domain from Hahella chejuensis
-
Srivastava AK, Sharma Y, Chary KVR. 2010. A natively unfolded ?γ-crystallin domain from Hahella chejuensis. Biochemistry 49:9746-55
-
(2010)
Biochemistry
, vol.49
, pp. 9746-9755
-
-
Srivastava, A.K.1
Sharma, Y.2
Kvr, C.3
-
33
-
-
0035906650
-
Calculation of ensembles of structures representing the unfolded state of an SH3 domain
-
Choy WY, Forman-Kay JD. 2001. Calculation of ensembles of structures representing the unfolded state of an SH3 domain. J. Mol. Biol. 308:1011-32
-
(2001)
J. Mol. Biol
, vol.308
, pp. 1011-1032
-
-
Choy, W.Y.1
Forman-Kay, J.D.2
-
34
-
-
84879177976
-
Describing intrinsically disordered proteins at atomic resolution by NMR
-
Jensen MR, Ruigrok RWH, Blackledge M. 2013. Describing intrinsically disordered proteins at atomic resolution by NMR. Curr. Opin. Struct. Biol. 23:426-35
-
(2013)
Curr. Opin. Struct. Biol
, vol.23
, pp. 426-435
-
-
Jensen, M.R.1
Rwh, R.2
Blackledge, M.3
-
35
-
-
79953845522
-
The orderly chaos of proteins
-
Dunker AK, Kriwacki RW. 2011. The orderly chaos of proteins. Sci. Am. 304:68-73
-
(2011)
Sci. Am
, vol.304
, pp. 68-73
-
-
Dunker, A.K.1
Kriwacki, R.W.2
-
36
-
-
0028961335
-
SCOP: A structural classification of proteins database for the investigation of sequences and structures
-
Murzin AG, Brenner SE, Hubbard T, Chothia C. 1995. SCOP: a structural classification of proteins database for the investigation of sequences and structures. J. Mol. Biol. 247:536-40
-
(1995)
J. Mol. Biol
, vol.247
, pp. 536-540
-
-
Murzin, A.G.1
Brenner, S.E.2
Hubbard, T.3
Chothia, C.4
-
37
-
-
0030777303
-
CATH-A hierarchic classification of protein domain structures
-
Orengo CA, Michie AD, Jones S, Jones DT, Swindells MB, Thornton JM. 1997. CATH-A hierarchic classification of protein domain structures. Structure 5:1093-108
-
(1997)
Structure
, vol.5
, pp. 1093-1108
-
-
Orengo, C.A.1
Michie, A.D.2
Jones, S.3
Jones, D.T.4
Swindells, M.B.5
Thornton, J.M.6
-
39
-
-
84892688932
-
Protein domain definition should allow for conditional disorder
-
Yegambaram K, Bulloch EM,KingstonRL. 2013. Protein domain definition should allow for conditional disorder. Protein Sci. 22:1502-18
-
(2013)
Protein Sci
, vol.22
, pp. 1502-1518
-
-
Yegambaram, K.1
Bulloch, E.M.2
Kingston, R.L.3
-
40
-
-
84870065644
-
Conditional disorder in chaperone action
-
Bardwell JCA, Jakob U. 2012. Conditional disorder in chaperone action. Trends Biochem. Sci. 37:517-25
-
(2012)
Trends Biochem. Sci
, vol.37
, pp. 517-525
-
-
Jca, B.1
Jakob, U.2
-
41
-
-
84888364233
-
Intrinsically semi-disordered state and its role in induced folding and protein aggregation
-
Zhang T, Faraggi E, Li Z, Zhou Y. 2013. Intrinsically semi-disordered state and its role in induced folding and protein aggregation. Cell Biochem. Biophys. 67:1193-205
-
(2013)
Cell Biochem. Biophys
, vol.67
, pp. 1193-1205
-
-
Zhang, T.1
Faraggi, E.2
Li, Z.3
Zhou, Y.4
-
42
-
-
47649124388
-
Milk proteins
-
McMeekin TL. 1952. Milk proteins. J. Food Prot. 15:57-63
-
(1952)
J. Food Prot
, vol.15
, pp. 57-63
-
-
McMeekin, T.L.1
-
43
-
-
49749185732
-
Optical rotation and viscosity of native and denatured proteins X Further studies on optical rotatory dispersion
-
Jirgensons B. 1958. Optical rotation and viscosity of native and denatured proteins. X. Further studies on optical rotatory dispersion. Arch. Biochem. Biophys. 74:57-69
-
(1958)
Arch. Biochem. Biophys
, vol.74
, pp. 57-69
-
-
Jirgensons, B.1
-
44
-
-
0015826853
-
Structural aspects of the fibrinogen to fibrin conversion
-
Doolittle RF. 1973. Structural aspects of the fibrinogen to fibrin conversion. Adv. Protein Chem. 27:1-109
-
(1973)
Adv. Protein Chem
, vol.27
, pp. 1-109
-
-
Doolittle, R.F.1
-
45
-
-
0017138322
-
Crystal structure of bovine trypsinogen at 1-8Åresolution I Data collection, application of patterson search techniques and preliminary structural interpretation
-
Bode W, Fehlhammer H, Huber R. 1976. Crystal structure of bovine trypsinogen at 1-8Åresolution. I. Data collection, application of patterson search techniques and preliminary structural interpretation. J. Mol. Biol. 106:325-35
-
(1976)
J. Mol. Biol
, vol.106
, pp. 325-335
-
-
Bode, W.1
Fehlhammer, H.2
Huber, R.3
-
46
-
-
0020609098
-
Activation of calcineurin by limited proteolysis
-
Manalan AS, Klee CB. 1983. Activation of calcineurin by limited proteolysis. Proc. Natl. Acad. Sci. USA 80:4291-95
-
(1983)
Proc. Natl. Acad. Sci. USA
, vol.80
, pp. 4291-4295
-
-
Manalan, A.S.1
Klee, C.B.2
-
47
-
-
84884353426
-
Caseins and the caseinmicelle: Their biological functions, structures and behaviour in foods
-
Holt C, Carver JA, Ecroyd H, ThornDC. 2013. Caseins and the caseinmicelle: their biological functions, structures and behaviour in foods. J. Dairy Sci. 96:6127-46
-
(2013)
J. Dairy Sci
, vol.96
, pp. 6127-6146
-
-
Holt, C.1
Carver, J.A.2
Ecroyd, H.3
Thorn, D.C.4
-
48
-
-
33744991713
-
Casein micelle structure: Models and muddles
-
Horne DS. 2006. Casein micelle structure: models and muddles. Curr. Opin. Colloid Interface Sci. 11:148-53
-
(2006)
Curr. Opin. Colloid Interface Sci
, vol.11
, pp. 148-153
-
-
Horne, D.S.1
-
49
-
-
0032520111
-
Acore-shellmodel of calcium phosphate nanoclusters stabilized by ?-casein phosphopeptides, derived from sedimentation equilibrium and small-Angle X-ray and neutron-scattering measurements
-
Holt C, Timmins PA,ErringtonN,Leaver J. 1998.Acore-shellmodel of calcium phosphate nanoclusters stabilized by ?-casein phosphopeptides, derived from sedimentation equilibrium and small-Angle X-ray and neutron-scattering measurements. Eur. J. Biochem. 252:73-78
-
(1998)
Eur. J. Biochem
, vol.252
, pp. 73-78
-
-
Holt, C.1
Timmins, P.A.2
Errington, N.3
Leaver, J.4
-
50
-
-
84858285679
-
Casein micelles and their internal structure
-
De Kruif CG, Huppertz T, Urban VS, Petukhov AV. 2012. Casein micelles and their internal structure. Adv. Colloid Interface Sci. 171/172:36-52
-
(2012)
Adv. Colloid Interface Sci
, vol.171
, Issue.172
, pp. 36-52
-
-
De Kruif, C.G.1
Huppertz, T.2
Urban, V.S.3
Petukhov, A.V.4
-
51
-
-
84879179668
-
Unfolded phosphopolypeptides enable soft and hard tissues to coexist in the same organism with relative ease
-
Holt C. 2013. Unfolded phosphopolypeptides enable soft and hard tissues to coexist in the same organism with relative ease. Curr. Opin. Struct. Biol. 23:420-25
-
(2013)
Curr. Opin. Struct. Biol
, vol.23
, pp. 420-425
-
-
Holt, C.1
-
52
-
-
63049110383
-
Role of calcium phosphate nanoclusters in the control of calcification
-
Holt C, Soøensen ES, Clegg RA. 2009. Role of calcium phosphate nanoclusters in the control of calcification. FEBS J. 276:2308-23
-
(2009)
FEBS J
, vol.276
, pp. 2308-2323
-
-
Holt, C.1
Soøensen, E.S.2
Clegg, R.A.3
-
53
-
-
0021760617
-
Amino acid sequence of phosvitin derived from the nucleotide sequence of part of the chicken vitellogenin gene
-
Byrne BM, van het Schip AD, van de Klundert JA, Arnberg AC, Gruber M, Ab G. 1984. Amino acid sequence of phosvitin derived from the nucleotide sequence of part of the chicken vitellogenin gene. Biochemistry 23:4275-79
-
(1984)
Biochemistry
, vol.23
, pp. 4275-4279
-
-
Byrne, B.M.1
Van Het Schip, A.D.2
Van De Klundert, J.A.3
Arnberg, A.C.4
Gruber, M.5
Ab, G.6
-
54
-
-
84872119730
-
Utilization of protein intrinsic disorder knowledge in structural proteomics
-
Oldfield CJ, Xue B, Van Y-Y, Ulrich EL, Markley JL, et al. 2013. Utilization of protein intrinsic disorder knowledge in structural proteomics. Biochim. Biophys. Acta 1834:487-98
-
(2013)
Biochim. Biophys. Acta
, vol.1834
, pp. 487-498
-
-
Oldfield, C.J.1
Xue, B.2
Van, Y.-Y.3
Ulrich, E.L.4
Markley, J.L.5
-
55
-
-
33645309600
-
Natively unfolded regions of the vertebrate fibrinogen molecule
-
Doolittle RF, Kollman JM. 2006. Natively unfolded regions of the vertebrate fibrinogen molecule. Proteins 63:391-97
-
(2006)
Proteins
, vol.63
, pp. 391-397
-
-
Doolittle, R.F.1
Kollman, J.M.2
-
56
-
-
0036017388
-
Evolutionary rate heterogeneity in proteins with long disordered regions
-
Brown CJ, Takayama S, Campen AM, Vise P,Marshall TW, et al. 2002. Evolutionary rate heterogeneity in proteins with long disordered regions. J. Mol. Evol. 55:104-10
-
(2002)
J. Mol. Evol
, vol.55
, pp. 104-110
-
-
Brown, C.J.1
Takayama, S.2
Campen, A.M.3
Vise Pmarshall, T.W.4
-
57
-
-
29144480142
-
Intrinsically disordered loops inserted into the structural domains of human proteins
-
Fukuchi S, Homma K, Minezaki Y, Nishikawa K. 2006. Intrinsically disordered loops inserted into the structural domains of human proteins. J. Mol. Biol. 355:845-57
-
(2006)
J. Mol. Biol
, vol.355
, pp. 845-857
-
-
Fukuchi, S.1
Homma, K.2
Minezaki, Y.3
Nishikawa, K.4
-
58
-
-
80052707733
-
Structure, stability, and interaction of fibrin ?C-domain polymers
-
Tsurupa G, Mahid A, Veklich Y, Weisel JW, Medved L. 2011. Structure, stability, and interaction of fibrin ?C-domain polymers. Biochemistry 50:8028-37
-
(2011)
Biochemistry
, vol.50
, pp. 8028-8037
-
-
Tsurupa, G.1
Mahid, A.2
Veklich, Y.3
Weisel, J.W.4
Medved, L.5
-
59
-
-
84881656622
-
Structural insights into fibrinogen dynamics using amide hydrogen/deuterium exchange mass spectrometry
-
Marsh JJ, Guan HS, Li S, Chiles PG, Tran D, Morris TA. 2013. Structural insights into fibrinogen dynamics using amide hydrogen/deuterium exchange mass spectrometry. Biochemistry 52:5491-502
-
(2013)
Biochemistry
, vol.52
, pp. 5491-5502
-
-
Marsh, J.J.1
Guan, H.S.2
Li, S.3
Chiles, P.G.4
Tran, D.5
Morris, T.A.6
-
60
-
-
0029662315
-
Structural studies of p21Waf1/Cip1/Sdi1 in the free and Cdk2-bound state: Conformational disorder mediates binding diversity
-
Kriwacki RW, Hengst L, Tennant L, Reed SI,Wright PE. 1996. Structural studies of p21Waf1/Cip1/Sdi1 in the free and Cdk2-bound state: conformational disorder mediates binding diversity. Proc. Natl. Acad. Sci. USA 93:11504-9
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, pp. 11504-11509
-
-
Kriwacki, R.W.1
Hengst, L.2
Tennant, L.3
Reed Siwright, P.E.4
-
61
-
-
84877896151
-
Exploring the binding diversity of intrinsically disordered proteins involved in one-to-many binding
-
HsuW-L, Oldfield CJ, Xue B, Meng J, Huang F, et al. 2013. Exploring the binding diversity of intrinsically disordered proteins involved in one-to-many binding. Protein Sci. 22:258-73
-
(2013)
Protein Sci
, vol.22
, pp. 258-273
-
-
Hsu, W.-L.1
Oldfield, C.J.2
Xue, B.3
Meng, J.4
Huang, F.5
-
62
-
-
0015813973
-
Effect of ionic strength and calcium ions on the activation of trypsinogen by enterokinase A modified test for the quantitative evaluation of this enzyme
-
Baratti J, Maroux S, Louvard D. 1973. Effect of ionic strength and calcium ions on the activation of trypsinogen by enterokinase. A modified test for the quantitative evaluation of this enzyme. Biochim. Biophys. Acta 321:632-38
-
(1973)
Biochim. Biophys. Acta
, vol.321
, pp. 632-638
-
-
Baratti, J.1
Maroux, S.2
Louvard, D.3
-
63
-
-
0017107996
-
Induction of the bovine trypsinogen-trypsin transition by peptides sequentially similar to the N-terminus of trypsin
-
Bode W, Huber R. 1976. Induction of the bovine trypsinogen-trypsin transition by peptides sequentially similar to the N-terminus of trypsin. FEBS Lett. 68:231-36
-
(1976)
FEBS Lett
, vol.68
, pp. 231-236
-
-
Bode, W.1
Huber, R.2
-
64
-
-
0001018554
-
Calcineurin: A calcium-and calmodulin-binding protein of the nervous system
-
Klee CB, Crouch TH, Krinks MH. 1979. Calcineurin: a calcium-and calmodulin-binding protein of the nervous system. Proc. Natl. Acad. Sci. USA 76:6270-73
-
(1979)
Proc. Natl. Acad. Sci. USA
, vol.76
, pp. 6270-6273
-
-
Klee, C.B.1
Crouch, T.H.2
Krinks, M.H.3
-
66
-
-
0028848524
-
Crystal structures of human calcineurin and the human FKBP12-FK506-calcineurin complex
-
Kissinger CR, Parge HE,KnightonDR, LewisCT, Pelletier LA, et al. 1995. Crystal structures of human calcineurin and the human FKBP12-FK506-calcineurin complex. Nature 378:641-44
-
(1995)
Nature
, vol.378
, pp. 641-644
-
-
Kissinger, C.R.1
Heknightondr, P.2
Lewis, C.T.3
Pelletier, L.A.4
-
67
-
-
1842534887
-
Inhibitors of the calcineurin/NFAT pathway
-
Martez-Martez S, Redondo JM. 2004. Inhibitors of the calcineurin/NFAT pathway. Curr. Med. Chem. 11:997-1007
-
(2004)
Curr. Med. Chem
, vol.11
, pp. 997-1007
-
-
Martez-Martez, S.1
Redondo, J.M.2
-
68
-
-
33645292569
-
Calmodulin signaling: Analysis and prediction of a disorder-dependent molecular recognition
-
Radivojac P, Vucetic S, O'Connor TR, Uversky VN, Obradović Z, Dunker AK. 2006. Calmodulin signaling: analysis and prediction of a disorder-dependent molecular recognition. Proteins 63:398-410
-
(2006)
Proteins
, vol.63
, pp. 398-410
-
-
Radivojac, P.1
Vucetic, S.2
O'connor, T.R.3
Uversky, V.N.4
Obradović, Z.5
Dunker, A.K.6
-
69
-
-
0027759276
-
Modulation of calmodulin plasticity in molecular recognition on the basis of X-ray structures
-
Meador WE,Means AR, Quiocho FA. 1993. Modulation of calmodulin plasticity in molecular recognition on the basis of X-ray structures. Science 262:1718-21
-
(1993)
Science
, vol.262
, pp. 1718-1721
-
-
Meador Wemeans, A.R.1
Quiocho, F.A.2
-
70
-
-
84855807552
-
Structural basis for activation of calcineurin by calmodulin
-
Rumi-Masante J, Rusinga FI, Lester TE, Dunlap TB, Williams TD, et al. 2012. Structural basis for activation of calcineurin by calmodulin. J. Mol. Biol. 415:307-17
-
(2012)
J. Mol. Biol
, vol.415
, pp. 307-317
-
-
Rumi-Masante, J.1
Rusinga, F.I.2
Lester, T.E.3
Dunlap, T.B.4
Williams, T.D.5
-
72
-
-
0030980926
-
The C-terminal half of the anti- factor, FlgM, becomes structured when bound to its target
-
Daughdrill GW, Chadsey MS, Karlinsey JE, Hughes KT, Dahlquist FW. 1997. The C-terminal half of the anti- factor, FlgM, becomes structured when bound to its target, ? 28. Nat. Struct. Mol. Biol. 4:285-91
-
(1997)
Nat. Struct. Mol. Biol
, vol.4
, pp. 285-291
-
-
Daughdrill, G.W.1
Chadsey, M.S.2
Karlinsey, J.E.3
Hughes, K.T.4
Dahlquist, F.W.5
-
73
-
-
73249124356
-
Determination of the free energy landscape of ?-synuclein using spin label nuclear magnetic resonancemeasurements
-
Allison JR, Varnai P, Dobson CM, Vendruscolo M. 2009. Determination of the free energy landscape of ?-synuclein using spin label nuclear magnetic resonancemeasurements. J. Am. Chem. Soc. 131:18314-26
-
(2009)
J. Am. Chem. Soc
, vol.131
, pp. 18314-18326
-
-
Allison, J.R.1
Varnai, P.2
Dobson, C.M.3
Vendruscolo, M.4
-
74
-
-
0028103855
-
Homeodomain-DNA recognition
-
GehringWJ, Qian YQ, BilleterM, Furukubo-Tokunaga K, Schier AF, et al. 1994. Homeodomain-DNA recognition. Cell 78:211-23
-
(1994)
Cell
, vol.78
, pp. 211-223
-
-
Gehring, W.J.1
Qian, Y.Q.2
Billeter, M.3
Furukubo-Tokunaga, K.4
Schier, A.F.5
-
75
-
-
78149244240
-
MOBI: A web server to define and visualize structural mobility in NMR protein ensembles
-
Martin AJM,Walsh I,Tosatto SCE. 2010. MOBI: a web server to define and visualize structural mobility in NMR protein ensembles. Bioinformatics 26:2916-17
-
(2010)
Bioinformatics
, vol.26
, pp. 2916-2917
-
-
Ajm, M.1
Walsh, I.2
Tosatto, S.C.E.3
-
76
-
-
84870947569
-
An assignment of intrinsically disordered regions of proteins based on NMR structures
-
OtaM,Koike R, Amemiya T, Tenno T, Romero PR, et al. 2013. An assignment of intrinsically disordered regions of proteins based on NMR structures. J. Struct. Biol. 181:29-36
-
(2013)
J. Struct. Biol
, vol.181
, pp. 29-36
-
-
Otamkoike, R.1
Amemiya, T.2
Tenno, T.3
Romero, P.R.4
-
77
-
-
0142149116
-
Detection of nano-second internal motion and determination of overall tumbling times independent of the time scale of internal motion in proteins from NMR relaxation data
-
Larsson G, Martinez G, Schleucher J, Wijmenga SS. 2003. Detection of nano-second internal motion and determination of overall tumbling times independent of the time scale of internal motion in proteins from NMR relaxation data. J. Biomol. NMR 27:291-312
-
(2003)
J. Biomol. NMR
, vol.27
, pp. 291-312
-
-
Larsson, G.1
Martinez, G.2
Schleucher, J.3
Wijmenga, S.S.4
-
78
-
-
5244224827
-
X-ray and NMR structure of human Bcl-XL, an inhibitor of programmed cell death
-
Muchmore SW, Sattler M, Liang H,Meadows RP, Harlan JE, et al. 1996. X-ray and NMR structure of human Bcl-XL, an inhibitor of programmed cell death. Nature 381:335-41
-
(1996)
Nature
, vol.381
, pp. 335-341
-
-
Muchmore, S.W.1
Sattler, M.2
Liang Hmeadows, R.P.3
Harlan, J.E.4
-
81
-
-
34248187130
-
Looking into live cells with in-cell NMR spectroscopy
-
Selenko P, Wagner G. 2007. Looking into live cells with in-cell NMR spectroscopy. J. Struct. Biol. 158:244-53
-
(2007)
J. Struct. Biol
, vol.158
, pp. 244-253
-
-
Selenko, P.1
Wagner, G.2
-
82
-
-
84866671599
-
Bacterial in-cell NMR of human ?-synuclein: A disordered monomer by nature?
-
Binolfi A, Theillet F-X, Selenko P. 2012. Bacterial in-cell NMR of human ?-synuclein: a disordered monomer by nature? Biochem. Soc. Trans. 40:950-54
-
(2012)
Biochem. Soc. Trans
, vol.40
, pp. 950-954
-
-
Binolfi, A.1
Theillet, F.-X.2
Selenko, P.3
-
83
-
-
43949111008
-
Differential dynamical effects of macromolecular crowding on an intrinsically disordered protein and a globular protein: Implications for in-cell NMR spectroscopy
-
Li C, Charlton LM, Lakkavaram A, Seagle C, Wang G, et al. 2008. Differential dynamical effects of macromolecular crowding on an intrinsically disordered protein and a globular protein: implications for in-cell NMR spectroscopy. J. Am. Chem. Soc. 130:6310-11
-
(2008)
J. Am. Chem. Soc
, vol.130
, pp. 6310-6311
-
-
Li, C.1
Charlton, L.M.2
Lakkavaram, A.3
Seagle, C.4
Wang, G.5
-
85
-
-
0000197231
-
The sequence attributemethod for determining relationships between sequence and protein disorder
-
XieQ,ArnoldG,Romero P,ObradovićZ,GarnerE,DunkerA. 1998. The sequence attributemethod for determining relationships between sequence and protein disorder. Workshop Genome Inform. 9:193-200
-
(1998)
Workshop Genome Inform
, vol.9
, pp. 193-200
-
-
Xie, Q.1
Arnold, G.2
Romero, P.3
Obradović, Z.4
Garner, E.5
Dunker, A.6
-
86
-
-
0036402827
-
Identification and functions of usefully disordered proteins
-
Dunker AK, Brown CJ, Obradović Z. 2002. Identification and functions of usefully disordered proteins. Adv. Protein Chem. 62:25-49
-
(2002)
Adv. Protein Chem
, vol.62
, pp. 25-49
-
-
Dunker, A.K.1
Brown, C.J.2
Obradović, Z.3
-
87
-
-
84886950258
-
The alphabet of intrinsic disorder. 1. Act like a pro: On the abundance and roles of proline residues in intrinsically disordered regions
-
Theillet FX, Kalmar L, Tompa P, Han KY, Selenko P, et al. 2013. The alphabet of intrinsic disorder. 1. Act like a pro: on the abundance and roles of proline residues in intrinsically disordered regions. Intrinsically Disord. Proteins 1:e24360
-
(2013)
Intrinsically Disord. Proteins
, vol.1
-
-
Theillet, F.X.1
Kalmar, L.2
Tompa, P.3
Han, K.Y.4
Selenko, P.5
-
88
-
-
34447539760
-
Composition profiler: A tool for discovery and visualization of amino acid composition differences
-
Vacic V, Uversky VN, Dunker AK, Lonardi S. 2007. Composition profiler: a tool for discovery and visualization of amino acid composition differences. BMC Bioinform. 8:211
-
(2007)
BMC Bioinform
, vol.8
, pp. 211
-
-
Vacic, V.1
Uversky, V.N.2
Dunker, A.K.3
Lonardi, S.4
-
89
-
-
0028205447
-
Enlarged representative set of protein structures
-
Hobohm U, Sander C. 1994. Enlarged representative set of protein structures. Protein Sci. 3:522-24
-
(1994)
Protein Sci
, vol.3
, pp. 522-524
-
-
Hobohm, U.1
Sander, C.2
-
90
-
-
0030691703
-
Identifying disordered regions in proteins from amino acid sequence
-
Romero P, Obradović Z, Kissinger C, Villafranca JE, Dunker AK. 1997. Identifying disordered regions in proteins from amino acid sequence. Int. Conf. Neural Netw. 1997:90-95
-
(1997)
Int. Conf. Neural Netw
, vol.1997
, pp. 90-95
-
-
Romero, P.1
Obradović, Z.2
Kissinger, C.3
Villafranca, J.E.4
Dunker, A.K.5
-
91
-
-
0000332920
-
Sequence data analysis for long disordered regions prediction in the calcineurin family
-
Romero P, ObradovićZ,DunkerAK. 1997. Sequence data analysis for long disordered regions prediction in the calcineurin family. Workshop Genome Inform. 8:110-24
-
(1997)
Workshop Genome Inform
, vol.8
, pp. 110-124
-
-
Romero, P.1
Obradović, Z.2
Dunker, A.K.3
-
92
-
-
0034669882
-
Why are natively unfolded" proteins unstructured under physiologic conditions?
-
Uversky VN, Gillespie JR, Fink AL. 2000. Why are "natively unfolded" proteins unstructured under physiologic conditions? Proteins 41:415-27
-
(2000)
Proteins
, vol.41
, pp. 415-427
-
-
Uversky, V.N.1
Gillespie, J.R.2
Fink, A.L.3
-
93
-
-
14844342815
-
The pairwise energy content estimated from amino acid composition discriminates between folded and intrinsically unstructured proteins
-
Dosztányi Z, Csizmök V, Tompa P, Simon I. 2005. The pairwise energy content estimated from amino acid composition discriminates between folded and intrinsically unstructured proteins. J. Mol. Biol. 347:827-39
-
(2005)
J. Mol. Biol
, vol.347
, pp. 827-839
-
-
Dosztányi, Z.1
Csizmök, V.2
Tompa, P.3
Simon, I.4
-
94
-
-
0001913048
-
Predicting protein disorder for N-, C-, and internal regions
-
Li X, Romero P, Rani M, Dunker AK, Obradović Z. 1999. Predicting protein disorder for N-, C-, and internal regions. Workshop Genome Inform. 10:30-40
-
(1999)
Workshop Genome Inform
, vol.10
, pp. 30-40
-
-
Li, X.1
Romero, P.2
Rani, M.3
Dunker, A.K.4
Obradović, Z.5
-
95
-
-
0035188314
-
Sequence complexity of disordered protein
-
Romero P, Obradović Z, Li X, Garner EC, Brown CJ, Dunker AK. 2001. Sequence complexity of disordered protein. Proteins 42:38-48
-
(2001)
Proteins
, vol.42
, pp. 38-48
-
-
Romero, P.1
Obradović, Z.2
Li, X.3
Garner, E.C.4
Brown, C.J.5
Dunker, A.K.6
-
96
-
-
33745289067
-
Length-dependent prediction of protein intrinsic disorder
-
Peng K, Radivojac P,Vucetic S, Dunker AK,Obradović Z. 2006. Length-dependent prediction of protein intrinsic disorder. BMC Bioinform. 7:208
-
(2006)
BMC Bioinform
, vol.7
, pp. 208
-
-
Peng, K.1
Radivojac, P.2
Vucetic, S.3
Dunker, A.K.4
Obradović, Z.5
-
98
-
-
68749093787
-
Predicting intrinsic disorder in proteins: An overview
-
He B, Wang K, Liu Y, Xue B, Uversky VN, Dunker AK. 2009. Predicting intrinsic disorder in proteins: an overview. Cell Res. 19:929-49
-
(2009)
Cell Res
, vol.19
, pp. 929-949
-
-
He, B.1
Wang, K.2
Liu, Y.3
Xue, B.4
Uversky, V.N.5
Dunker, A.K.6
-
99
-
-
84872806410
-
Inherent relationships among different biophysical predictionmethods for intrinsically disordered proteins
-
Jin F,Liu Z. 2013. Inherent relationships among different biophysical predictionmethods for intrinsically disordered proteins. Biophys. J. 104:488-95
-
(2013)
Biophys. J
, vol.104
, pp. 488-495
-
-
Jin, F.1
Liu, Z.2
-
101
-
-
24044515001
-
FoldIndex: A simple tool to predict whether a given protein sequence is intrinsically unfolded
-
Prilusky J, Felder CE, Zeev-Ben-Mordehai T, Rydberg EH, Man O, et al. 2005. FoldIndex: a simple tool to predict whether a given protein sequence is intrinsically unfolded. Bioinformatics 21:3435-38
-
(2005)
Bioinformatics
, vol.21
, pp. 3435-3438
-
-
Prilusky, J.1
Felder, C.E.2
Zeev-Ben-Mordehai, T.3
Rydberg, E.H.4
Man, O.5
-
102
-
-
24044538903
-
IUPred: Web server for the prediction of intrinsically unstructured regions of proteins based on estimated energy content
-
Dosztányi Z, Csizmok V, Tompa P, Simon I. 2005. IUPred: web server for the prediction of intrinsically unstructured regions of proteins based on estimated energy content. Bioinformatics 21:3433-34
-
(2005)
Bioinformatics
, vol.21
, pp. 3433-3434
-
-
Dosztányi, Z.1
Csizmok, V.2
Tompa, P.3
Simon, I.4
-
103
-
-
80855132586
-
Evaluation of disorder predictions in CASP9
-
Monastyrskyy B, Fidelis K, Moult J, Tramontano A, Kryshtafovych A. 2011. Evaluation of disorder predictions in CASP9. Proteins Struct. Funct. Bioinform. 79:107-18
-
(2011)
Proteins Struct. Funct. Bioinform
, vol.79
, pp. 107-118
-
-
Monastyrskyy, B.1
Fidelis, K.2
Moult, J.3
Tramontano, A.4
Kryshtafovych, A.5
-
104
-
-
84892954999
-
Assessment of protein disorder region predictions in CASP10
-
Monastyrskyy B, Kryshtafovych A, Moult J, Tramontano A, Fidelis K. 2014. Assessment of protein disorder region predictions in CASP10. Proteins 82(Suppl. 2):127-37
-
(2014)
Proteins
, vol.82
, Issue.SUPPL. 2
, pp. 127-137
-
-
Monastyrskyy, B.1
Kryshtafovych, A.2
Moult, J.3
Tramontano, A.4
Fidelis, K.5
-
105
-
-
0031633365
-
Thousands of proteins likely to have long disordered regions
-
Romero P, Obradović Z, Kissinger CR, Villafranca JE, Garner E, et al. 1998. Thousands of proteins likely to have long disordered regions. Pac. Symp. Biocomput. 3:437-48
-
(1998)
Pac. Symp. Biocomput
, vol.3
, pp. 437-448
-
-
Romero, P.1
Obradović, Z.2
Kissinger, C.R.3
Villafranca, J.E.4
Garner, E.5
-
106
-
-
0034570889
-
Intrinsic protein disorder in complete genomes
-
Dunker AK,ObradovićZ,Romero P,GarnerEC, BrownCJ. 2000. Intrinsic protein disorder in complete genomes. Workshop Genome Inform. 11:161-71
-
(2000)
Workshop Genome Inform
, vol.11
, pp. 161-171
-
-
Dunker, A.K.1
Obradović, Z.2
Romero, P.3
Garner, E.C.4
Brown, C.J.5
-
107
-
-
1542358787
-
Prediction and functional analysis of native disorder in proteins from the three kingdoms of life
-
Ward JJ, Sodhi JS, McGuffin LJ, Buxton BF, Jones DT. 2004. Prediction and functional analysis of native disorder in proteins from the three kingdoms of life. J. Mol. Biol. 337:635-45
-
(2004)
J. Mol. Biol
, vol.337
, pp. 635-645
-
-
Ward, J.J.1
Sodhi, J.S.2
McGuffin, L.J.3
Buxton, B.F.4
Jones, D.T.5
-
108
-
-
84859701551
-
Orderly order in protein intrinsic disorder distribution: Disorder in 3,500 proteomes from viruses and the three domains of life
-
Xue B,Dunker AK, Uversky VN. 2012. Orderly order in protein intrinsic disorder distribution: disorder in 3,500 proteomes from viruses and the three domains of life. J. Biomol. Struct. Dyn. 30:137-49
-
(2012)
J. Biomol. Struct. Dyn
, vol.30
, pp. 137-149
-
-
Xue, B.1
Dunker, A.K.2
Uversky, V.N.3
-
109
-
-
0036408751
-
Intrinsic disorder in cellsignaling and cancer-Associated proteins
-
Iakoucheva LM, Brown CJ, Lawson JD, Obradović Z, Dunker AK. 2002. Intrinsic disorder in cellsignaling and cancer-Associated proteins. J. Mol. Biol. 323:573-84
-
(2002)
J. Mol. Biol
, vol.323
, pp. 573-584
-
-
Iakoucheva, L.M.1
Brown, C.J.2
Lawson, J.D.3
Obradović, Z.4
Dunker, A.K.5
-
110
-
-
48249097986
-
Intrinsically disordered proteins in human diseases: Introducing the D2 concept
-
Uversky VN, Oldfield CJ, Dunker AK. 2008. Intrinsically disordered proteins in human diseases: introducing the D2 concept. Annu. Rev. Biophys. 37:215-46
-
(2008)
Annu. Rev. Biophys
, vol.37
, pp. 215-246
-
-
Uversky, V.N.1
Oldfield, C.J.2
Dunker, A.K.3
-
111
-
-
84868115657
-
Disease-Associated mutations disrupt functionally important regions of intrinsic protein disorder
-
Vacic V, Markwick PRL, Oldfield CJ, Zhao X, Haynes C, et al. 2012. Disease-Associated mutations disrupt functionally important regions of intrinsic protein disorder. PLoS Comput. Biol. 8:e1002709
-
(2012)
PLoS Comput. Biol
, vol.8
-
-
Vacic, V.1
Prl, M.2
Oldfield, C.J.3
Zhao, X.4
Haynes, C.5
-
112
-
-
82655179908
-
Disease mutations in disordered regions-exception to the rule?
-
Vacic V, Iakoucheva LM. 2012. Disease mutations in disordered regions-exception to the rule? Mol. Biosyst. 8:27-32
-
(2012)
Mol. Biosyst
, vol.8
, pp. 27-32
-
-
Vacic, V.1
Iakoucheva, L.M.2
-
113
-
-
77449103113
-
Identification, analysis, and prediction of protein ubiquitination sites
-
RadivojacP, Vacic V, Haynes C, Cocklin RR,MohanA, et al. 2010. Identification, analysis, and prediction of protein ubiquitination sites. Proteins 78:365-80
-
(2010)
Proteins
, vol.78
, pp. 365-380
-
-
Radivojac, P.1
Vacic, V.2
Haynes, C.3
Cocklin, R.R.4
Mohan, A.5
-
114
-
-
78650153738
-
Musite, a tool for global prediction of general and kinasespecific phosphorylation sites
-
Gao J, Thelen JJ, Dunker AK, Xu D. 2010. Musite, a tool for global prediction of general and kinasespecific phosphorylation sites. Mol. Cell Proteomics 9:2586-600
-
(2010)
Mol. Cell Proteomics
, vol.9
, pp. 2586-2600
-
-
Gao, J.1
Thelen, J.J.2
Dunker, A.K.3
Xu, D.4
-
115
-
-
79960338721
-
Overexpression and purification of halophilic proteins in Haloferax volcanii
-
Allers T. 2010. Overexpression and purification of halophilic proteins in Haloferax volcanii. Bioeng. Bugs 1:288-90
-
(2010)
Bioeng. Bugs
, vol.1
, pp. 288-290
-
-
Allers, T.1
-
116
-
-
79959240249
-
Binary classification of protein molecules into intrinsically disordered and ordered segments
-
Fukuchi S, Hosoda K, Homma K, Gojobori T, Nishikawa K. 2011. Binary classification of protein molecules into intrinsically disordered and ordered segments. BMC Struct. Biol. 11:29
-
(2011)
BMC Struct. Biol
, vol.11
, pp. 29
-
-
Fukuchi, S.1
Hosoda, K.2
Homma, K.3
Gojobori, T.4
Nishikawa, K.5
-
117
-
-
84876524220
-
D2P2: Database of disordered protein predictions
-
Oates ME, Romero P, Ishida T, Ghalwash M, Mizianty MJ, et al. 2013. D2P2: database of disordered protein predictions. Nucleic Acids Res. 41:D508-16
-
(2013)
Nucleic Acids Res
, vol.41
-
-
Oates, M.E.1
Romero, P.2
Ishida, T.3
Ghalwash, M.4
Mizianty, M.J.5
-
118
-
-
77949360998
-
Modularity of intrinsic disorder in the human proteome
-
Pentony MM, JonesDT. 2010. Modularity of intrinsic disorder in the human proteome. Proteins 78:212-21
-
(2010)
Proteins
, vol.78
, pp. 212-221
-
-
Pentony, M.M.1
Jones, D.T.2
-
119
-
-
0024291679
-
Transcriptional activation, acid blobs and negative noodles
-
Sigler PB. 1988. Transcriptional activation, acid blobs and negative noodles. Nature 333:210-12
-
(1988)
Nature
, vol.333
, pp. 210-212
-
-
Sigler, P.B.1
-
120
-
-
33744961763
-
Intrinsic disorder in transcription factors
-
Liu J, Perumal NB, Oldfield CJ, Su EW, Uversky VN, Dunker AK. 2006. Intrinsic disorder in transcription factors. Biochemistry 45:6873-88
-
(2006)
Biochemistry
, vol.45
, pp. 6873-6888
-
-
Liu, J.1
Perumal, N.B.2
Oldfield, C.J.3
Su, E.W.4
Uversky, V.N.5
Dunker, A.K.6
-
121
-
-
33744829805
-
Human transcription factors contain a high fraction of intrinsically disordered regions essential for transcriptional regulation
-
Minezaki Y, Homma K, Kinjo AR, Nishikawa K. 2006. Human transcription factors contain a high fraction of intrinsically disordered regions essential for transcriptional regulation. J. Mol. Biol. 359:1137-49
-
(2006)
J. Mol. Biol
, vol.359
, pp. 1137-1149
-
-
Minezaki, Y.1
Homma, K.2
Kinjo, A.R.3
Nishikawa, K.4
-
122
-
-
84902171122
-
-
Intrinsically Disordered Protein Analysis 1. New York: Humana
-
Uversky VN, Dunker AK. 2012. Methods in Molecular Biology, Vol. 895: Intrinsically Disordered Protein Analysis. 1. New York: Humana
-
(2012)
Methods in Molecular Biology
, vol.895
-
-
Uversky, V.N.1
Dunker, A.K.2
-
123
-
-
84902171122
-
-
Intrinsically Disordered Protein Analysis 2. New York: Humana
-
Uversky VN, Dunker AK. 2012. Methods in Molecular Biology, Vol. 896: Intrinsically Disordered Protein Analysis. 2. New York: Humana
-
(2012)
Methods in Molecular Biology
, vol.896
-
-
Uversky, V.N.1
Dunker, A.K.2
-
124
-
-
0031581883
-
Probing the conformational state of apomyoglobin by limited proteolysis
-
Fontana A, Zambonin M, Polverino de Laureto P, De Filippis V, Clementi A, Scaramella E. 1997. Probing the conformational state of apomyoglobin by limited proteolysis. J. Mol. Biol. 266:223-30
-
(1997)
J. Mol. Biol
, vol.266
, pp. 223-230
-
-
Fontana, A.1
Zambonin, M.2
De Polverino Laureto, P.3
De Filippis, V.4
Clementi, A.5
Scaramella, E.6
-
125
-
-
0035107306
-
Identification of intrinsic order and disorder in the DNA repair protein XPA
-
Iakoucheva LM, Kimzey AL, Masselon CD, Bruce JE, Garner EC, et al. 2001. Identification of intrinsic order and disorder in the DNA repair protein XPA. Protein Sci. 10:560-71
-
(2001)
Protein Sci
, vol.10
, pp. 560-571
-
-
Iakoucheva, L.M.1
Kimzey, A.L.2
Masselon, C.D.3
Bruce, J.E.4
Garner, E.C.5
-
126
-
-
51049119258
-
Multiple intrinsically disordered sequences alter DNA binding by the homeodomain of the Drosophila Hox protein ultrabithorax
-
Liu Y, Matthews KS, Bondos SE. 2008. Multiple intrinsically disordered sequences alter DNA binding by the homeodomain of the Drosophila Hox protein ultrabithorax. J. Biol. Chem. 283:20874-87
-
(2008)
J. Biol. Chem
, vol.283
, pp. 20874-20887
-
-
Liu, Y.1
Matthews, K.S.2
Bondos, S.E.3
-
127
-
-
84866989231
-
High-throughput characterization of intrinsic disorder in proteins from the protein structure initiative
-
Johnson DE, Xue B, SickmeierMD, Meng J, CorteseMS, et al. 2012. High-throughput characterization of intrinsic disorder in proteins from the protein structure initiative. J. Struct. Biol. 180:201-15
-
(2012)
J. Struct. Biol
, vol.180
, pp. 201-215
-
-
Johnson, D.E.1
Xue, B.2
Sickmeier, M.D.3
Meng Cortese, J.M.S.4
-
129
-
-
0033594926
-
Structural features of the C-terminal domain of bovine rhodopsin: A site-directed spin-labeling study
-
Langen R, Cai K, Altenbach C, Khorana HG, Hubbell WL. 1999. Structural features of the C-terminal domain of bovine rhodopsin: a site-directed spin-labeling study. Biochemistry 38:7918-24
-
(1999)
Biochemistry
, vol.38
, pp. 7918-7924
-
-
Langen, R.1
Cai, K.2
Altenbach, C.3
Khorana, H.G.4
Hubbell, W.L.5
-
130
-
-
58149279796
-
Mapping ?-helical induced folding within the intrinsically disordered C-terminal domain of themeasles virus nucleoprotein by site-directed spin-labeling EPR spectroscopy
-
Belle V, Rouger S, Costanzo S, Liquiére E, Strancar J, et al. 2008. Mapping ?-helical induced folding within the intrinsically disordered C-terminal domain of themeasles virus nucleoprotein by site-directed spin-labeling EPR spectroscopy. Proteins 73:973-88
-
(2008)
Proteins
, vol.73
, pp. 973-988
-
-
Belle, V.1
Rouger, S.2
Costanzo, S.3
Liquiére, E.4
Strancar, J.5
-
131
-
-
84857132923
-
How random are intrinsically disordered proteins? A small angle scattering perspective
-
Receveur-Brechot V, Durand D. 2012. How random are intrinsically disordered proteins? A small angle scattering perspective. Curr. Protein Pept. Sci. 13:55-75
-
(2012)
Curr. Protein Pept. Sci
, vol.13
, pp. 55-75
-
-
Receveur-Brechot, V.1
Durand, D.2
-
132
-
-
84880840334
-
Comprehensivemacromolecular conformations mapped by quantitative SAXS analyses
-
Hura GL, Budworth H, Dyer KN, Rambo RP,HammelM, et al. 2013. Comprehensivemacromolecular conformations mapped by quantitative SAXS analyses. Nat. Methods 10:453-54
-
(2013)
Nat. Methods
, vol.10
, pp. 453-454
-
-
Hura, G.L.1
Budworth, H.2
Dyer, K.N.3
Rphammelm, R.4
-
133
-
-
84879097056
-
The disordered C-terminal domain of human DNA glycosylase NEIL1 contributes to its stability via intramolecular interactions
-
Hegde ML, Tsutakawa SE, Hegde PM, Holthauzen LMF, Li J, et al. 2013. The disordered C-terminal domain of human DNA glycosylase NEIL1 contributes to its stability via intramolecular interactions. J. Mol. Biol. 425:2359-71
-
(2013)
J. Mol. Biol
, vol.425
, pp. 2359-2371
-
-
Hegde, M.L.1
Tsutakawa, S.E.2
Hegde, P.M.3
Lmf, H.4
Li, J.5
-
134
-
-
84891810469
-
PE-DB: The database of structural ensembles of intrinsically disordered and denatured proteins
-
VaradiM, Kosol S, Lebrun P, Valentini E, Blackledge M, et al. 2014. pE-DB: the database of structural ensembles of intrinsically disordered and denatured proteins. Nucleic Acids Res. 42:D326-35
-
(2014)
Nucleic Acids Res
, vol.42
-
-
Varadi, M.1
Kosol, S.2
Lebrun, P.3
Valentini, E.4
Blackledge, M.5
-
136
-
-
79952114716
-
Functional classification of scaffold proteins and related molecules
-
Buday L, Tompa P. 2010. Functional classification of scaffold proteins and related molecules. FEBS J. 277:4348-55
-
(2010)
FEBS J
, vol.277
, pp. 4348-4355
-
-
Buday, L.1
Tompa, P.2
-
137
-
-
84859320307
-
The roles of intrinsic disorder in orchestrating theWnt pathway
-
Xue B,Dunker AK, UverskyVN. 2012. The roles of intrinsic disorder in orchestrating theWnt pathway. J. Biomol. Struct. Dyn. 29:843-61
-
(2012)
J. Biomol. Struct. Dyn
, vol.29
, pp. 843-861
-
-
Xue, B.1
Dunker, A.K.2
Uversky, V.N.3
-
138
-
-
78650858373
-
Critical scaffolding regions of the tumor suppressor axin1 are natively unfolded
-
Noutsou M, Duarte AMS, Anvarian Z, Didenko T, Minde DP, et al. 2011. Critical scaffolding regions of the tumor suppressor axin1 are natively unfolded. J. Mol. Biol. 405:773-86
-
(2011)
J. Mol. Biol
, vol.405
, pp. 773-786
-
-
Noutsou, M.1
Ams, D.2
Anvarian, Z.3
Didenko, T.4
Minde, D.P.5
-
139
-
-
37249067732
-
The origin of protein interactions and allostery in colocalization
-
Kuriyan J, Eisenberg D. 2007. The origin of protein interactions and allostery in colocalization. Nature 450:983-90
-
(2007)
Nature
, vol.450
, pp. 983-990
-
-
Kuriyan, J.1
Eisenberg, D.2
-
140
-
-
84878224022
-
Stochastic machines as a colocalization mechanism for scaffold protein function
-
Xue B, Romero PR, Noutsou M, Maurice MM, Rüdiger SGD, et al. 2013. Stochastic machines as a colocalization mechanism for scaffold protein function. FEBS Lett. 587:1587-91
-
(2013)
FEBS Lett
, vol.587
, pp. 1587-1591
-
-
Xue, B.1
Romero, P.R.2
Noutsou, M.3
Maurice, M.M.4
Sgd, R.5
-
141
-
-
84880171038
-
Electron microscopy structure of human APC/CCDH1-EMI1 reveals multimodal mechanism of E3 ligase shutdown
-
Frye JJ, Brown NG, Petzold G, Watson ER, Grace CRR, et al. 2013. Electron microscopy structure of human APC/CCDH1-EMI1 reveals multimodal mechanism of E3 ligase shutdown. Nat. Struct. Mol. Biol. 20:827-35
-
(2013)
Nat. Struct. Mol. Biol
, vol.20
, pp. 827-835
-
-
Frye, J.J.1
Brown, N.G.2
Petzold, G.3
Watson, E.R.4
Crr, G.5
-
142
-
-
0031616362
-
Protein disorder and the evolution of molecular recognition: Theory, predictions and observations
-
Dunker AK, Garner E, Guilliot S, Romero P, Albrecht K, et al. 1998. Protein disorder and the evolution of molecular recognition: theory, predictions and observations. Pac. Symp. Biocomput. 3:473-84
-
(1998)
Pac. Symp. Biocomput
, vol.3
, pp. 473-484
-
-
Dunker, A.K.1
Garner, E.2
Guilliot, S.3
Romero, P.4
Albrecht, K.5
-
143
-
-
0037188377
-
Intrinsic disorder and protein function
-
Dunker AK, Brown CJ, Lawson JD, Iakoucheva LM, Obradović Z. 2002. Intrinsic disorder and protein function. Biochemistry 41:6573-82
-
(2002)
Biochemistry
, vol.41
, pp. 6573-6582
-
-
Dunker, A.K.1
Brown, C.J.2
Lawson, J.D.3
Iakoucheva, L.M.4
Obradović, Z.5
-
144
-
-
14644435825
-
Intrinsically unstructured proteins and their functions
-
Dyson HJ, Wright PE. 2005. Intrinsically unstructured proteins and their functions. Nat. Rev. Mol. Cell Biol. 6:197-208
-
(2005)
Nat. Rev. Mol. Cell Biol
, vol.6
, pp. 197-208
-
-
Dyson, H.J.1
Wright, P.E.2
-
145
-
-
33847768609
-
Functional anthology of intrinsic disorder 1 Biological processes and functions of proteins with long disordered regions
-
XieH, Vucetic S, Iakoucheva LM,Oldfield CJ,Dunker AK, et al. 2007. Functional anthology of intrinsic disorder. 1. Biological processes and functions of proteins with long disordered regions. J. Proteome Res. 6:1882-98
-
(2007)
J. Proteome Res
, vol.6
, pp. 1882-1898
-
-
Xie, H.1
Vucetic, S.2
Iakoucheva, L.3
Moldfield, C.J.4
Dunker, A.K.5
-
146
-
-
34249282661
-
Functional anthology of intrinsic disorder 2 Cellular components, domains, technical terms, developmental processes, and coding sequence diversities correlated with long disordered regions
-
Vucetic S, Xie H, Iakoucheva LM, Oldfield CJ, Dunker AK, et al. 2007. Functional anthology of intrinsic disorder. 2. Cellular components, domains, technical terms, developmental processes, and coding sequence diversities correlated with long disordered regions. J. Proteome Res. 6:1899-916
-
(2007)
J. Proteome Res
, vol.6
, pp. 1899-1916
-
-
Vucetic, S.1
Xie, H.2
Iakoucheva, L.M.3
Oldfield, C.J.4
Dunker, A.K.5
-
147
-
-
33847783298
-
Functional anthology of intrinsic disorder 3 Ligands, post-translational modifications, and diseases associated with intrinsically disordered proteins
-
Xie H, Vucetic S, Iakoucheva LM, Oldfield CJ, Dunker AK, et al. 2007. Functional anthology of intrinsic disorder. 3. Ligands, post-translational modifications, and diseases associated with intrinsically disordered proteins. J. Proteome Res. 6:1917-32
-
(2007)
J. Proteome Res
, vol.6
, pp. 1917-1932
-
-
Xie, H.1
Vucetic, S.2
Iakoucheva, L.M.3
Oldfield, C.J.4
Dunker, A.K.5
-
148
-
-
0023868490
-
Reconstruction by site-directed mutagenesis of the transition state for the activation of tyrosine by the tyrosyl-tRNA synthetase: A mobile loop envelopes the transition state in an induced-fit mechanism
-
Fersht AR, Knill-Jones JW, Bedouelle H, Winter G. 1988. Reconstruction by site-directed mutagenesis of the transition state for the activation of tyrosine by the tyrosyl-tRNA synthetase: A mobile loop envelopes the transition state in an induced-fit mechanism. Biochemistry 27:1581-87
-
(1988)
Biochemistry
, vol.27
, pp. 1581-1587
-
-
Fersht, A.R.1
Knill-Jones, J.W.2
Bedouelle, H.3
Winter, G.4
-
149
-
-
17044401342
-
Defining the role of active-site loop fluctuations in dihydrofolate reductase catalysis
-
McElheny D, Schnell JR, Lansing JC, Dyson HJ,Wright PE. 2005. Defining the role of active-site loop fluctuations in dihydrofolate reductase catalysis. Proc. Natl. Acad. Sci. USA 102:5032-37
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 5032-5037
-
-
McElheny, D.1
Schnell, J.R.2
Lansing, J.C.3
Dyson, H.J.4
Wright, P.E.5
-
150
-
-
84874663959
-
A large-scale evaluation of computational protein function prediction
-
Radivojac P, Clark WT, Oron TR, Schnoes AM, Wittkop T, et al. 2013. A large-scale evaluation of computational protein function prediction. Nat. Methods 10:221-27
-
(2013)
Nat. Methods
, vol.10
, pp. 221-227
-
-
Radivojac, P.1
Clark, W.T.2
Oron, T.R.3
Schnoes, A.M.4
Wittkop, T.5
-
151
-
-
84879144696
-
The contribution of intrinsic disorder prediction to the elucidation of protein function
-
Cozzetto D, Jones DT. 2013. The contribution of intrinsic disorder prediction to the elucidation of protein function. Curr. Opin. Struct. Biol. 23:467-72
-
(2013)
Curr. Opin. Struct. Biol
, vol.23
, pp. 467-472
-
-
Cozzetto, D.1
Jones, D.T.2
-
152
-
-
33846099868
-
DisProt: The database of disordered proteins
-
Sickmeier M, Hamilton JA, LeGall T, Vacic V, Cortese MS, et al. 2007. DisProt: the database of disordered proteins. Nucleic Acids Res. 35:D786-93
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Sickmeier, M.1
Hamilton, J.A.2
Legall, T.3
Vacic, V.4
Cortese, M.S.5
-
153
-
-
84862178663
-
IDEAL: Intrinsically disordered proteins with extensive annotations and literature
-
Fukuchi S, Sakamoto S,Nobe Y, Murakami SD, Amemiya T, et al. 2012. IDEAL: intrinsically disordered proteins with extensive annotations and literature. Nucleic Acids Res. 40:D507-11
-
(2012)
Nucleic Acids Res
, vol.40
-
-
Fukuchi, S.1
Sakamoto Snobe, Y.2
Murakami, S.D.3
Amemiya, T.4
-
154
-
-
84865129593
-
MobiDB: A comprehensive database of intrinsic protein disorder annotations
-
Di Domenico T, Walsh I,Martin AJ, Tosatto SC. 2012. MobiDB: a comprehensive database of intrinsic protein disorder annotations. Bioinformatics 28:2080-81
-
(2012)
Bioinformatics
, vol.28
, pp. 2080-2081
-
-
Di Domenico, T.1
Walsh Imartin, A.J.2
Tosatto, S.C.3
-
155
-
-
65649135865
-
The use of group 3 LEA proteins as fusion partners in facilitating recombinant expression of recalcitrant proteins in E coli
-
Singh J, Whitwill S, Lacroix G, Douglas J, Dubuc E, et al. 2009. The use of group 3 LEA proteins as fusion partners in facilitating recombinant expression of recalcitrant proteins in E. coli. Protein Expr. Purif. 67:15-22
-
(2009)
Protein Expr. Purif
, vol.67
, pp. 15-22
-
-
Singh, J.1
Whitwill, S.2
Lacroix, G.3
Douglas, J.4
Dubuc, E.5
-
156
-
-
84866403056
-
Sweeping away protein aggregation with entropic bristles: Intrinsically disordered protein fusions enhance soluble expression
-
Santner AA, CroyCH,Vasanwala FH,UverskyVN, Van Y-YJ, Dunker AK. 2012. Sweeping away protein aggregation with entropic bristles: Intrinsically disordered protein fusions enhance soluble expression. Biochemistry 51:7250-62
-
(2012)
Biochemistry
, vol.51
, pp. 7250-7262
-
-
Santner, A.A.1
Croy, C.H.2
Vasanwala, F.H.3
Uversky, V.N.4
Van, Y.-Y.J.5
Dunker, A.K.6
-
157
-
-
84873194008
-
Protein flexibility, not disorder, is intrinsic to molecular recognition
-
Janin J, Sternberg MJE. 2013. Protein flexibility, not disorder, is intrinsic to molecular recognition. F1000 Biol. Rep. 5:2
-
(2013)
F1000 Biol. Rep
, vol.5
, pp. 2
-
-
Janin, J.1
Mje, S.2
-
158
-
-
41149125082
-
Structural disorder serves as a weak signal for intracellular protein degradation
-
Tompa P, Prilusky J, Silman I, Sussman JL. 2008. Structural disorder serves as a weak signal for intracellular protein degradation. Proteins 71:903-9
-
(2008)
Proteins
, vol.71
, pp. 903-909
-
-
Tompa, P.1
Prilusky, J.2
Silman, I.3
Sussman, J.L.4
-
160
-
-
30144437939
-
Intrinsic unstructuredness and abundance of pest motifs in eukaryotic proteomes
-
Singh GP, Ganapathi M, Sandhu KS, Dash D. 2006. Intrinsic unstructuredness and abundance of pest motifs in eukaryotic proteomes. Proteins 62:309-15
-
(2006)
Proteins
, vol.62
, pp. 309-315
-
-
Singh, G.P.1
Ganapathi, M.2
Sandhu, K.S.3
Dash, D.4
-
161
-
-
33646767065
-
Conformational flexibility may explain multiple cellular roles of pest motifs
-
Sandhu KS, Dash D. 2006. Conformational flexibility may explain multiple cellular roles of pest motifs. Proteins 63:727-32
-
(2006)
Proteins
, vol.63
, pp. 727-732
-
-
Sandhu, K.S.1
Dash, D.2
-
162
-
-
0002582635
-
Predicting binding regions within disordered proteins
-
Garner E, Romero P, Dunker AK, Brown C, Obradović Z. 1999. Predicting binding regions within disordered proteins. Workshop Genome Inform. 10:41-50
-
(1999)
Workshop Genome Inform
, vol.10
, pp. 41-50
-
-
Garner, E.1
Romero, P.2
Dunker, A.K.3
Brown, C.4
Obradović, Z.5
-
163
-
-
36749037699
-
Mining ?-helix-forming molecular recognition features with cross species sequence alignments
-
Cheng Y, Oldfield CJ, Meng J, Romero P, Uversky VN, Dunker AK. 2007. Mining ?-helix-forming molecular recognition features with cross species sequence alignments. Biochemistry 46:13468-77
-
(2007)
Biochemistry
, vol.46
, pp. 13468-13477
-
-
Cheng, Y.1
Oldfield, C.J.2
Meng, J.3
Romero, P.4
Uversky, V.N.5
Dunker, A.K.6
-
164
-
-
34250815165
-
Characterization of molecular recognition features, morfs, and their binding partners
-
Vacic V, Oldfield CJ, Mohan A, Radivojac P, Cortese MS, et al. 2007. Characterization of molecular recognition features, morfs, and their binding partners. J. Proteome Res. 6:2351-66
-
(2007)
J. Proteome Res
, vol.6
, pp. 2351-2366
-
-
Vacic, V.1
Oldfield, C.J.2
Mohan, A.3
Radivojac, P.4
Cortese, M.S.5
-
165
-
-
84883313748
-
On the importance of polar interactions for complexes containing intrinsically disordered proteins
-
Wong ETC, Na D, Gsponer J. 2013. On the importance of polar interactions for complexes containing intrinsically disordered proteins. PLoS Comput. Biol. 9:e1003192
-
(2013)
PLoS Comput. Biol
, vol.9
-
-
Etc, W.1
Na, D.2
Gsponer, J.3
-
166
-
-
79955596590
-
The translational repressor 4E-BP called to order by eIF4E: New structural insights by SAXS
-
Gosselin P, Oulhen N, Jam M, Ronzca J, Cormier P, et al. 2011. The translational repressor 4E-BP called to order by eIF4E: new structural insights by SAXS. Nucleic Acids Res. 39:3496-503
-
(2011)
Nucleic Acids Res
, vol.39
, pp. 3496-3503
-
-
Gosselin, P.1
Oulhen, N.2
Jam, M.3
Ronzca, J.4
Cormier, P.5
-
167
-
-
33847200077
-
Intrinsic disorder in the Protein Data Bank
-
Le Gall T, Romero PR, Cortese MS, Uversky VN, Dunker AK. 2007. Intrinsic disorder in the Protein Data Bank. J. Biomol. Struct. Dyn. 24:325-42
-
(2007)
J. Biomol. Struct. Dyn
, vol.24
, pp. 325-342
-
-
Le Gall, T.1
Romero, P.R.2
Cortese, M.S.3
Uversky, V.N.4
Dunker, A.K.5
-
169
-
-
34548482560
-
Another window into disordered protein function
-
Dunker AK. 2007. Another window into disordered protein function. Structure 15:1026-28
-
(2007)
Structure
, vol.15
, pp. 1026-1028
-
-
Dunker, A.K.1
-
170
-
-
70349996473
-
ANCHOR: Web server for predicting protein binding regions in disordered proteins
-
Dosztányi Z,Mészéros B, Simon I. 2009. ANCHOR: web server for predicting protein binding regions in disordered proteins. Bioinformatics 25:2745-46
-
(2009)
Bioinformatics
, vol.25
, pp. 2745-2746
-
-
Dosztányi, Z.1
Mészéros, B.2
Simon, I.3
-
171
-
-
84863518014
-
MoRFpred, a computational tool for sequence-based prediction and characterization of short disorder-to-order transitioning binding regions in proteins
-
Disfani FM, Hsu W-L, Mizianty MJ, Oldfield CJ, Xue B, et al. 2012. MoRFpred, a computational tool for sequence-based prediction and characterization of short disorder-to-order transitioning binding regions in proteins. Bioinformatics 28:i75-83
-
(2012)
Bioinformatics
, vol.28
-
-
Disfani, F.M.1
Hsu, W.-L.2
Mizianty, M.J.3
Oldfield, C.J.4
Xue, B.5
-
172
-
-
0042622251
-
Scansite 2.0: Proteome-wide prediction of cell signaling interactions using short sequence motifs
-
Obenauer JC, Cantley LC, Yaffe MB. 2003. Scansite 2.0: proteome-wide prediction of cell signaling interactions using short sequence motifs. Nucleic Acids Res. 31:3635-41
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3635-3641
-
-
Obenauer, J.C.1
Cantley, L.C.2
Yaffe, M.B.3
-
173
-
-
0042622252
-
ELM server: A new resource for investigating short functional sites in modular eukaryotic proteins
-
Puntervoll P, Linding R, Gemünd C, Chabanis-Davidson S, Mattingsdal M, et al. 2003. ELM server: a new resource for investigating short functional sites in modular eukaryotic proteins. Nucleic Acids Res. 31:3625-30
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3625-3630
-
-
Puntervoll, P.1
Linding, R.2
Gemünd, C.3
Chabanis-Davidson, S.4
Mattingsdal, M.5
-
174
-
-
34547588388
-
The SLiMDisc server: Short, linear motif discovery in proteins
-
Davey NE, Edwards RJ, Shields DC. 2007. The SLiMDisc server: short, linear motif discovery in proteins. Nucleic Acids Res. 35:W455-59
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Davey, N.E.1
Edwards, R.J.2
Shields, D.C.3
-
175
-
-
84859219888
-
MinimotifMiner 3.0: Database expansion and significantly improved reduction of false-positive predictions from consensus sequences
-
Mi T, Merlin JC,Deverasetty S, Gryk MR, Bill TJ, et al. 2012. MinimotifMiner 3.0: database expansion and significantly improved reduction of false-positive predictions from consensus sequences. Nucleic Acids Res. 40:D252-60
-
(2012)
Nucleic Acids Res
, vol.40
-
-
Mi, T.1
Merlin, J.C.2
Deverasetty, S.3
Gryk, M.R.4
Bill, T.J.5
-
176
-
-
84867055643
-
Disordered binding regions and linear motifs-bridging the gap between two models of molecular recognition
-
Mészéros B, Dosztányi Z, Simon I. 2012. Disordered binding regions and linear motifs-bridging the gap between two models of molecular recognition. PLoS ONE 7:e46829
-
(2012)
PLoS ONE
, vol.7
-
-
Mészéros, B.1
Dosztányi, Z.2
Simon, I.3
-
177
-
-
84870902799
-
Secondary structure, a missing component of sequence-based Minimotif definitions
-
Sargeant DP, Gryk MR, Maciejewski MW, Thapar V, Kundeti V, et al. 2012. Secondary structure, a missing component of sequence-based Minimotif definitions. PLoS ONE 7:e49957
-
(2012)
PLoS ONE
, vol.7
-
-
Sargeant, D.P.1
Gryk, M.R.2
Maciejewski, M.W.3
Thapar, V.4
Kundeti, V.5
-
178
-
-
4143107222
-
Analysis of ordered and disordered protein complexes reveals structural features discriminating between stable and unstable monomers
-
Gunasekaran K, Tsai C-J, Nussinov R. 2004. Analysis of ordered and disordered protein complexes reveals structural features discriminating between stable and unstable monomers. J. Mol. Biol. 341:1327-41
-
(2004)
J. Mol. Biol
, vol.341
, pp. 1327-1341
-
-
Gunasekaran, K.1
Tsai, C.-J.2
Nussinov, R.3
-
179
-
-
40949117264
-
Flexible nets: Disorder and induced fit in the associations of p53 and 14-3-3 with their partners
-
Oldfield CJ, Meng J, Yang JY, Yang MQ, Uversky VN, Dunker AK. 2008. Flexible nets: disorder and induced fit in the associations of p53 and 14-3-3 with their partners. BMC Genomics 9(Suppl. 1):S1
-
(2008)
BMC Genomics
, vol.9
, Issue.SUPPL. 1
-
-
Oldfield, C.J.1
Meng, J.2
Yang, J.Y.3
Yang, M.Q.4
Uversky, V.N.5
Dunker, A.K.6
-
180
-
-
84897112748
-
A creature with a hundred waggly tails: Intrinsically disordered proteins in the ribosome
-
Peng Z, Oldfield CJ, Xue B, Mizianty MJ, Dunker AK, et al. 2013. A creature with a hundred waggly tails: intrinsically disordered proteins in the ribosome. Cell Mol. Life Sci. 71:1477-504
-
(2013)
Cell Mol. Life Sci
, vol.71
, pp. 1477-1504
-
-
Peng, Z.1
Oldfield, C.J.2
Xue, B.3
Mizianty, M.J.4
Dunker, A.K.5
-
181
-
-
2142757231
-
Preformed structural elements feature in partner recognition by intrinsically unstructured proteins
-
Fuxreiter M, Simon I, Friedrich P, Tompa P. 2004. Preformed structural elements feature in partner recognition by intrinsically unstructured proteins. J. Mol. Biol. 338:1015-26
-
(2004)
J. Mol. Biol
, vol.338
, pp. 1015-1026
-
-
Fuxreiter, M.1
Simon, I.2
Friedrich, P.3
Tompa, P.4
-
182
-
-
0016631388
-
Binding of flexible ligands to macromolecules
-
Burgen AS, RobertsGC, Feeney J. 1975. Binding of flexible ligands to macromolecules. Nature 253:753-55
-
(1975)
Nature
, vol.253
, pp. 753-755
-
-
Burgen, A.S.1
Roberts, G.C.2
Feeney, J.3
-
183
-
-
0042882982
-
Enzyme flexibility and enzyme action
-
Koshland DE Jr. 1959. Enzyme flexibility and enzyme action. J. Cell Comp. Physiol. 54:245-58
-
(1959)
J. Cell Comp. Physiol
, vol.54
, pp. 245-258
-
-
Koshland Jr., D.E.1
-
184
-
-
23444450909
-
Coupling of local folding to site-specific binding of proteins to DNA
-
Spolar RS, Record MT Jr. 1994. Coupling of local folding to site-specific binding of proteins to DNA. Science 263:777-84
-
(1994)
Science
, vol.263
, pp. 777-784
-
-
Spolar, R.S.1
Record Jr., M.T.2
-
185
-
-
64449083994
-
Reconciling binding mechanisms of intrinsically disordered proteins
-
Espinoza-Fonseca LM. 2009. Reconciling binding mechanisms of intrinsically disordered proteins. Biochem. Biophys. Res. Commun. 382:479-82
-
(2009)
Biochem. Biophys. Res. Commun
, vol.382
, pp. 479-482
-
-
Espinoza-Fonseca, L.M.1
-
186
-
-
34250821717
-
Mechanism of coupled folding and binding of an intrinsically disordered protein
-
Sugase K, Dyson HJ, Wright PE. 2007. Mechanism of coupled folding and binding of an intrinsically disordered protein. Nature 447:1021-25
-
(2007)
Nature
, vol.447
, pp. 1021-1025
-
-
Sugase, K.1
Dyson, H.J.2
Wright, P.E.3
-
187
-
-
84866679293
-
Regulation of protein phosphatase 1 by intrinsically disordered proteins
-
Choy MS, PageR, PetiW. 2012. Regulation of protein phosphatase 1 by intrinsically disordered proteins. Biochem. Soc. Trans. 40:969-74
-
(2012)
Biochem. Soc. Trans
, vol.40
, pp. 969-974
-
-
Choy, M.S.1
Page, R.2
Peti, W.3
-
188
-
-
84873859687
-
Energetic basis of uncoupling folding from binding for an intrinsically disordered protein
-
Drobnak I, De Jonge N, Haesaerts S, Vesnaver G, Loris R, Lah J. 2013. Energetic basis of uncoupling folding from binding for an intrinsically disordered protein. J. Am. Chem. Soc. 135:1288-94
-
(2013)
J. Am. Chem. Soc
, vol.135
, pp. 1288-1294
-
-
Drobnak, I.1
De Jonge, N.2
Haesaerts, S.3
Vesnaver, G.4
Loris, R.5
Lah, J.6
-
189
-
-
84883289774
-
Dissecting partner recognition by an intrinsically disordered protein using descriptive
-
random mutagenesis
-
Gruet A, Dosnon M, Vassena A, Lombard V, Gerlier D, et al. 2013. Dissecting partner recognition by an intrinsically disordered protein using descriptive random mutagenesis. J. Mol. Biol. 425:3495-509
-
(2013)
J. Mol. Biol
, vol.425
, pp. 3495-3509
-
-
Gruet, A.1
Dosnon, M.2
Vassena, A.3
Lombard, V.4
Gerlier, D.5
-
190
-
-
84869387199
-
Slow, reversible, coupled folding and binding of the spectrin tetramerization domain
-
Shammas SL, Rogers JM, Hill SA, Clarke J. 2012. Slow, reversible, coupled folding and binding of the spectrin tetramerization domain. Biophys. J. 103:2203-14
-
(2012)
Biophys. J
, vol.103
, pp. 2203-2214
-
-
Shammas, S.L.1
Rogers, J.M.2
Hill, S.A.3
Clarke, J.4
-
191
-
-
84886648634
-
Remarkably fast coupled folding and binding of the intrinsically disordered transactivation domain of cMyb to CBP KIX
-
Shammas SL, Travis AJ, Clarke J. 2013. Remarkably fast coupled folding and binding of the intrinsically disordered transactivation domain of cMyb to CBP KIX. J. Phys. Chem. B 117:13346-56
-
(2013)
J. Phys. Chem. B
, vol.117
, pp. 13346-13356
-
-
Shammas, S.L.1
Travis, A.J.2
Clarke, J.3
-
192
-
-
0034255123
-
Speeding molecular recognition by using the folding funnel: The fly-casting mechanism
-
Shoemaker BA, Portman JJ, Wolynes PG. 2000. Speeding molecular recognition by using the folding funnel: the fly-casting mechanism. Proc. Natl. Acad. Sci. USA 97:8868-73
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 8868-8873
-
-
Shoemaker, B.A.1
Portman, J.J.2
Wolynes, P.G.3
-
193
-
-
84888432749
-
Modeling protein association mechanisms and kinetics
-
Zhou H-X, Bates PA. 2013. Modeling protein association mechanisms and kinetics. Curr. Opin. Struct. Biol. 23:887-93
-
(2013)
Curr. Opin. Struct. Biol
, vol.23
, pp. 887-893
-
-
Zhou, H.-X.1
Bates, P.A.2
-
194
-
-
0035799582
-
Protein interactions. Unspinning the web
-
Hasty J, Collins JJ. 2001. Protein interactions. Unspinning the web. Nature 411:30-31
-
(2001)
Nature
, vol.411
, pp. 30-31
-
-
Hasty, J.1
Collins, J.J.2
-
195
-
-
27144464910
-
Flexible nets the roles of intrinsic disorder in protein interaction networks
-
Dunker AK, Cortese MS, Romero P, Iakoucheva LM, Uversky VN. 2005. Flexible nets. The roles of intrinsic disorder in protein interaction networks. FEBS J. 272:5129-48
-
(2005)
FEBS J
, vol.272
, pp. 5129-5148
-
-
Dunker, A.K.1
Cortese, M.S.2
Romero, P.3
Iakoucheva, L.M.4
Uversky, V.N.5
-
198
-
-
84879143595
-
Alternative splicing of intrinsically disordered regions and rewiring of protein interactions
-
Buljan M, ChalanconG,Dunker AK, Bateman A, Balaji S, et al. 2013. Alternative splicing of intrinsically disordered regions and rewiring of protein interactions. Curr. Opin. Struct. Biol. 23:443-50
-
(2013)
Curr. Opin. Struct. Biol
, vol.23
, pp. 443-450
-
-
Buljan, M.1
Chalancon, G.2
Dunker, A.K.3
Bateman, A.4
Balaji, S.5
-
199
-
-
84876911760
-
Distinct types of disorder in the human proteome: Functional implications for alternative splicing
-
Colak R, Kim T, Michaut M, Sun M, Irimia M, et al. 2013. Distinct types of disorder in the human proteome: functional implications for alternative splicing. PLoS Comput. Biol. 9:e1003030
-
(2013)
PLoS Comput. Biol
, vol.9
-
-
Colak, R.1
Kim, T.2
Michaut, M.3
Sun, M.4
Irimia, M.5
-
200
-
-
84863003268
-
Tissue-specific alternative splicing remodels protein-protein interaction networks
-
Ellis JD, Barrios-Rodiles M, Colak R, Irimia M, Kim T, et al. 2012. Tissue-specific alternative splicing remodels protein-protein interaction networks. Mol. Cell 46:884-92
-
(2012)
Mol. Cell
, vol.46
, pp. 884-892
-
-
Ellis, J.D.1
Barrios-Rodiles, M.2
Colak, R.3
Irimia, M.4
Kim, T.5
-
201
-
-
0037203771
-
Mutual synergistic folding in recruitment of CBP/p300 by p160 nuclear receptor coactivators
-
Demarest SJ, Martinez-Yamout M, Chung J, Chen H, XuW, et al. 2002. Mutual synergistic folding in recruitment of CBP/p300 by p160 nuclear receptor coactivators. Nature 415:549-53
-
(2002)
Nature
, vol.415
, pp. 549-553
-
-
Demarest, S.J.1
Martinez-Yamout, M.2
Chung, J.3
Xuw, C.H.4
-
202
-
-
0036087630
-
CDD: A database of conserved domain alignments with links to domain three-dimensional structure
-
Marchler-Bauer A, Panchenko AR, Shoemaker BA, Thiessen PA, Geer LY, Bryant SH. 2002. CDD: a database of conserved domain alignments with links to domain three-dimensional structure. Nucleic Acids Res. 30:281-83
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 281-283
-
-
Marchler-Bauer, A.1
Panchenko, A.R.2
Shoemaker, B.A.3
Thiessen, P.A.4
Geer, L.Y.5
Bryant, S.H.6
-
203
-
-
65249102824
-
Close encounters of the third kind: Disordered domains and the interactions of proteins
-
Tompa P, Fuxreiter M, Oldfield CJ, Simon I, Dunker AK, Uversky VN. 2009. Close encounters of the third kind: disordered domains and the interactions of proteins. Bioessays 31:328-35
-
(2009)
Bioessays
, vol.31
, pp. 328-335
-
-
Tompa, P.1
Fuxreiter, M.2
Oldfield, C.J.3
Simon, I.4
Dunker, A.K.5
Uversky, V.N.6
-
204
-
-
84858077472
-
The Pfam protein families database
-
Punta M, Coggill PC, Eberhardt RY, Mistry J, Tate J, et al. 2012. The Pfam protein families database. Nucleic Acids Res. 40:D290-301
-
(2012)
Nucleic Acids Res
, vol.40
-
-
Punta, M.1
Coggill, P.C.2
Eberhardt, R.Y.3
Mistry, J.4
Tate, J.5
-
206
-
-
39049162291
-
Role of intrinsic flexibility in signal transduction mediated by the cell cycle regulator, p27kip1
-
Galea CA, Nourse A, Wang Y, Sivakolundu SG, Heller WT, Kriwacki RW. 2008. Role of intrinsic flexibility in signal transduction mediated by the cell cycle regulator, p27kip1. J. Mol. Biol. 376:827-38
-
(2008)
J. Mol. Biol
, vol.376
, pp. 827-838
-
-
Galea, C.A.1
Nourse, A.2
Wang, Y.3
Sivakolundu, S.G.4
Heller, W.T.5
Kriwacki, R.W.6
-
207
-
-
40949105259
-
Signal transduction via unstructured protein conduits
-
Dunker AK, Uversky VN. 2008. Signal transduction via unstructured protein conduits. Nat. Chem. Biol. 4:229-30
-
(2008)
Nat. Chem. Biol
, vol.4
, pp. 229-230
-
-
Dunker, A.K.1
Uversky, V.N.2
-
208
-
-
84859517054
-
Intrinsic protein flexibility in regulation of cell proliferation: Advantages for signaling and opportunities for novel therapeutics
-
Follis AV, Galea CA, Kriwacki RW. 2012. Intrinsic protein flexibility in regulation of cell proliferation: advantages for signaling and opportunities for novel therapeutics. Adv. Exp. Med. Biol. 725:27-49
-
(2012)
Adv. Exp. Med. Biol
, vol.725
, pp. 27-49
-
-
Follis, A.V.1
Galea, C.A.2
Kriwacki, R.W.3
-
209
-
-
33748456399
-
Analysis of molecular recognition features (MoRFs
-
Mohan A, Oldfield CJ, Radivojac P, Vacic V, CorteseMS, et al. 2006. Analysis of molecular recognition features (MoRFs). J. Mol. Biol. 362:1043-59
-
(2006)
J. Mol. Biol
, vol.362
, pp. 1043-1059
-
-
Mohan, A.1
Oldfield, C.J.2
Radivojac, P.3
Cortesems, V.V.4
-
210
-
-
37749053887
-
Fuzzy complexes: Polymorphism and structural disorder in protein-protein interactions
-
Tompa P, Fuxreiter M. 2008. Fuzzy complexes: polymorphism and structural disorder in protein-protein interactions. Trends Biochem. Sci. 33:2-8
-
(2008)
Trends Biochem. Sci
, vol.33
, pp. 2-8
-
-
Tompa, P.1
Fuxreiter, M.2
-
211
-
-
0033152072
-
Cap-dependent translation initiation in eukaryotes is regulated by a molecular mimic of eIF4G
-
Marcotrigiano J, Gingras AC, Sonenberg N, Burley SK. 1999. Cap-dependent translation initiation in eukaryotes is regulated by a molecular mimic of eIF4G. Mol. Cell 3:707-16
-
(1999)
Mol. Cell
, vol.3
, pp. 707-716
-
-
Marcotrigiano, J.1
Gingras, A.C.2
Sonenberg, N.3
Burley, S.K.4
-
212
-
-
0035969559
-
Multisite phosphorylation of a CDK inhibitor sets a threshold for the onset of DNA replication
-
Nash P, Tang X, Orlicky S, Chen Q, Gertler FB, et al. 2001. Multisite phosphorylation of a CDK inhibitor sets a threshold for the onset of DNA replication. Nature 414:514-21
-
(2001)
Nature
, vol.414
, pp. 514-521
-
-
Nash, P.1
Tang, X.2
Orlicky, S.3
Chen, Q.4
Gertler, F.B.5
-
213
-
-
34547462095
-
Polyelectrostatic interactions of disordered ligands suggest a physical basis for ultrasensitivity
-
Borg M, Mittag T, Pawson T, Tyers M, Forman-Kay JD, Chan HS. 2007. Polyelectrostatic interactions of disordered ligands suggest a physical basis for ultrasensitivity. Proc. Natl. Acad. Sci. USA 104:9650-55
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 9650-9655
-
-
Borg, M.1
Mittag, T.2
Pawson, T.3
Tyers, M.4
Forman-Kay, J.D.5
Chan, H.S.6
-
214
-
-
0002086583
-
Nucleotide binding proteins
-
ed.M Balaban. Amsterdam: Elsevier/ North-Holland
-
Schulz GE. 1979. Nucleotide binding proteins. In Moledular Mechanisms of Biological Recognition, ed.M Balaban, pp. 79-94. Amsterdam: Elsevier/North- Holland
-
(1979)
Moledular Mechanisms of Biological Recognition
, pp. 79-94
-
-
Schulz, G.E.1
-
215
-
-
0033573827
-
Structural features of protein-nucleic acid recognition sites
-
Nadassy K, Wodak SJ, Janin J. 1999. Structural features of protein-nucleic acid recognition sites. Biochemistry 38:1999-2017
-
(1999)
Biochemistry
, vol.38
, pp. 1999-2017
-
-
Nadassy, K.1
Wodak, S.J.2
Janin, J.3
-
216
-
-
82655179905
-
Intrinsically disordered regions as affinity tuners in protein-DNA interactions
-
Vuzman D, Levy Y. 2012. Intrinsically disordered regions as affinity tuners in protein-DNA interactions. Mol. Biosyst. 8:47-57
-
(2012)
Mol. Biosyst
, vol.8
, pp. 47-57
-
-
Vuzman, D.1
Levy, Y.2
-
217
-
-
0033602242
-
Structure of a DNA-bound ultrabithoraxextradenticle homeodomain complex
-
Passner JM, RyooHD, Shen L,Mann RS, Aggarwal AK. 1999. Structure of a DNA-bound ultrabithoraxextradenticle homeodomain complex. Nature 397:714-19
-
(1999)
Nature
, vol.397
, pp. 714-719
-
-
Passner, J.M.1
Ryoo, H.D.2
Shen, L.3
Mann, R.S.4
Aggarwal, A.K.5
-
218
-
-
60349104299
-
The spliceosome: Design principles of a dynamic RNPmachine
-
Wahl MC,Will CL, L?hrmann R. 2009. The spliceosome: design principles of a dynamic RNPmachine. Cell 136:701-18
-
(2009)
Cell
, vol.136
, pp. 701-718
-
-
Wahl, M.C.1
Will, C.L.2
Lhrmann, R.3
-
219
-
-
84861381646
-
How should we think about the ribosome?
-
Moore PB. 2012. How should we think about the ribosome? Annu. Rev. Biophys. 41:1-19
-
(2012)
Annu. Rev. Biophys
, vol.41
, pp. 1-19
-
-
Moore, P.B.1
-
220
-
-
0037115872
-
Comparative analysis of ribosomal proteins in complete genomes: An example of reductive evolution at the domain scale
-
Lecompte O, Ripp R, Thierry J-C, Moras D, Poch O. 2002. Comparative analysis of ribosomal proteins in complete genomes: an example of reductive evolution at the domain scale. Nucleic Acids Res. 30:5382-90
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 5382-5390
-
-
Lecompte, O.1
Ripp, R.2
Thierry, J.-C.3
Moras, D.4
Poch, O.5
-
221
-
-
63549150458
-
The role of disordered ribosomal protein extensions in the early steps of eubacterial 50S ribosomal subunit assembly
-
Timsit Y, Acosta Z, Allemand F, Chiaruttini C, Springer M. 2009. The role of disordered ribosomal protein extensions in the early steps of eubacterial 50S ribosomal subunit assembly. Int. J. Mol. Sci. 10:817-34
-
(2009)
Int. J. Mol. Sci
, vol.10
, pp. 817-834
-
-
Timsit, Y.1
Acosta, Z.2
Allemand, F.3
Chiaruttini, C.4
Springer, M.5
-
222
-
-
84877133527
-
Malleable ribonucleoprotein machine: Protein intrinsic disorder in the Saccharomyces cerevisiae spliceosome
-
Coelho RibeiroMdL, Espinosa J, Islam S, Martinez O, Thanki JJ, et al. 2013. Malleable ribonucleoprotein machine: protein intrinsic disorder in the Saccharomyces cerevisiae spliceosome. PeerJ 1:e2
-
(2013)
PeerJ
, vol.1
-
-
Ribeiromdl, C.1
Espinosa, J.2
Islam, S.3
Martinez, O.4
Thanki, J.J.5
-
223
-
-
78651189765
-
On the nature of allosteric transitions: A plausible model
-
Monod J, Wyman J, Changeux JP. 1965. On the nature of allosteric transitions: a plausible model. J. Mol. Biol. 12:88-118
-
(1965)
J. Mol. Biol
, vol.12
, pp. 88-118
-
-
Monod, J.1
Wyman, J.2
Changeux, J.P.3
-
224
-
-
0013863816
-
Comparison of experimental binding data and theoretical models in proteins containing subunits
-
KoshlandDE Jr,Némethy G, Filmer D. 1966. Comparison of experimental binding data and theoretical models in proteins containing subunits. Biochemistry 5:365-85
-
(1966)
Biochemistry
, vol.5
, pp. 365-385
-
-
Koshland Jr., D.E.1
Némethy, G.2
Filmer, D.3
-
225
-
-
76249122268
-
Biochemistry An ensemble view of allostery
-
Hilser VJ. 2010. Biochemistry. An ensemble view of allostery. Science 327:653-54
-
(2010)
Science
, vol.327
, pp. 653-654
-
-
Hilser, V.J.1
-
226
-
-
76049085126
-
Regulating transcription regulators via allostery and flexibility
-
Beckett D. 2009. Regulating transcription regulators via allostery and flexibility. Proc. Natl. Acad. Sci. USA 106:22035-36
-
(2009)
Proc. Natl. Acad. Sci. USA
, vol.106
, pp. 22035-22036
-
-
Beckett, D.1
-
227
-
-
84858234186
-
Agonism/antagonism switching in allosteric ensembles
-
Motlagh HN, Hilser VJ. 2012. Agonism/antagonism switching in allosteric ensembles. Proc. Natl. Acad. Sci. USA 109:4134-39
-
(2012)
Proc. Natl. Acad. Sci. USA
, vol.109
, pp. 4134-4139
-
-
Motlagh, H.N.1
Hilser, V.J.2
-
228
-
-
84862635896
-
Allosteric modulators of steroid hormone receptors: Structural dynamics and gene regulation
-
Kumar R, McEwan IJ. 2012. Allosteric modulators of steroid hormone receptors: structural dynamics and gene regulation. Endocr. Rev. 33:271-99
-
(2012)
Endocr. Rev
, vol.33
, pp. 271-299
-
-
Kumar, R.1
McEwan, I.J.2
-
229
-
-
84879327823
-
Modulation of allostery by protein intrinsic disorder
-
Ferreon ACM, Ferreon JC, Wright PE, Deniz AA. 2013. Modulation of allostery by protein intrinsic disorder. Nature 498:390-94
-
(2013)
Nature
, vol.498
, pp. 390-394
-
-
Acm, F.1
Ferreon, J.C.2
Wright, P.E.3
Deniz, A.A.4
-
231
-
-
3442902456
-
The role of structural disorder in the function of RNA and protein chaperones
-
Tompa P, Csermely P. 2004. The role of structural disorder in the function of RNA and protein chaperones. FASEB J. 18:1169-75
-
(2004)
FASEB J
, vol.18
, pp. 1169-1175
-
-
Tompa, P.1
Csermely, P.2
-
232
-
-
3342989676
-
A mobile loop order-disorder transition modulates the speed of chaperonin cycling
-
Shewmaker F, Kerner MJ, Hayer-Hartl M, Klein G, Georgopoulos C, Landry SJ. 2004. A mobile loop order-disorder transition modulates the speed of chaperonin cycling. Protein Sci. 13:2139-48
-
(2004)
Protein Sci
, vol.13
, pp. 2139-2148
-
-
Shewmaker, F.1
Kerner, M.J.2
Hayer-Hartl, M.3
Klein, G.4
Georgopoulos, C.5
Landry, S.J.6
-
233
-
-
77950597578
-
Intrinsically disordered chaperones in plants and animals
-
Tompa P, Kovacs D. 2010. Intrinsically disordered chaperones in plants and animals. Biochem. Cell Biol. 88:167-74
-
(2010)
Biochem. Cell Biol
, vol.88
, pp. 167-174
-
-
Tompa, P.1
Kovacs, D.2
-
234
-
-
41149181268
-
Amyloid fibril formation by bovine milk ?S2-casein occurs under physiological conditions yet is prevented by its natural counterpart, ?S1-casein
-
Thorn DC, Ecroyd H, Sunde M, Poon S, Carver JA. 2008. Amyloid fibril formation by bovine milk ?S2-casein occurs under physiological conditions yet is prevented by its natural counterpart, ?S1-casein. Biochemistry 47:3926-36
-
(2008)
Biochemistry
, vol.47
, pp. 3926-3936
-
-
Thorn, D.C.1
Ecroyd, H.2
Sunde, M.3
Poon, S.4
Carver, J.A.5
-
235
-
-
0025327474
-
Evolution of protein cores Constraints in point mutations as observed in globin tertiary structures
-
BordoD, Argos P. 1990. Evolution of protein cores. Constraints in point mutations as observed in globin tertiary structures. J. Mol. Biol. 211:975-88
-
(1990)
J. Mol. Biol
, vol.211
, pp. 975-988
-
-
Bordo, D.1
Argos, P.2
-
236
-
-
39049185694
-
Packing regularities in biological structures relate to their dynamics
-
Jernigan RL, Kloczkowski A. 2007. Packing regularities in biological structures relate to their dynamics. Methods Mol. Biol. 350:251-76
-
(2007)
Methods Mol. Biol
, vol.350
, pp. 251-276
-
-
Jernigan, R.L.1
Kloczkowski, A.2
-
237
-
-
33645778262
-
Conservation of intrinsic disorder in protein domains and families. I. A database of conserved predicted disordered regions
-
Chen JW, Romero P, Uversky VN, Dunker AK. 2006. Conservation of intrinsic disorder in protein domains and families. I. A database of conserved predicted disordered regions. J. Proteome Res. 5:879-87
-
(2006)
J. Proteome Res
, vol.5
, pp. 879-887
-
-
Chen, J.W.1
Romero, P.2
Uversky, V.N.3
Dunker, A.K.4
-
238
-
-
33645753974
-
Conservation of intrinsic disorder in protein domains and families II Functions of conserved disorder
-
Chen JW, Romero P, Uversky VN, Dunker AK. 2006. Conservation of intrinsic disorder in protein domains and families. II. Functions of conserved disorder. J. Proteome Res. 5:888-98
-
(2006)
J. Proteome Res
, vol.5
, pp. 888-898
-
-
Chen, J.W.1
Romero, P.2
Uversky, V.N.3
Dunker, A.K.4
-
239
-
-
79851508882
-
Bringing order to protein disorder through comparative genomics and genetic interactions
-
Bellay J, Han S,MichautM, Kim T, Costanzo M, et al. 2011. Bringing order to protein disorder through comparative genomics and genetic interactions. Genome Biol. 12:R14
-
(2011)
Genome Biol
, vol.12
-
-
Bellay, J.1
Smichautm, H.2
Kim, T.3
Costanzo, M.4
-
240
-
-
84862992463
-
Tissue-specific splicing of disordered segments that embed binding motifs rewires protein interaction networks
-
Buljan M, ChalanconG, Eustermann S,WagnerGP, FuxreiterM, et al. 2012. Tissue-specific splicing of disordered segments that embed binding motifs rewires protein interaction networks. Mol. Cell 46:871-83
-
(2012)
Mol. Cell
, vol.46
, pp. 871-883
-
-
Buljan, M.1
Chalancon, G.2
Eustermann, S.3
Wagner, G.P.4
Fuxreiter, M.5
-
241
-
-
35248852356
-
Dynamic behavior of an intrinsically unstructured linker domain is conserved in the face of negligible amino acid sequence conservation
-
Daughdrill GW, Narayanaswami P, Gilmore SH, Belczyk A, Brown CJ. 2007. Dynamic behavior of an intrinsically unstructured linker domain is conserved in the face of negligible amino acid sequence conservation. J. Mol. Evol. 65:277-88
-
(2007)
J. Mol. Evol
, vol.65
, pp. 277-288
-
-
Daughdrill, G.W.1
Narayanaswami, P.2
Gilmore, S.H.3
Belczyk, A.4
Brown, C.J.5
-
242
-
-
77249102545
-
Comparing models of evolution for ordered and disordered proteins
-
Brown CJ, Johnson AK, Daughdrill GW. 2010. Comparing models of evolution for ordered and disordered proteins. Mol. Biol. Evol. 27:609-21
-
(2010)
Mol. Biol. Evol
, vol.27
, pp. 609-621
-
-
Brown, C.J.1
Johnson, A.K.2
Daughdrill, G.W.3
-
243
-
-
84862987797
-
The role of structural disorder in the rewiring of protein interactions through evolution
-
M111.014969
-
Mosca R, Pache RA, Aloy P. 2012. The role of structural disorder in the rewiring of protein interactions through evolution. Mol. Cell Proteomics 11:M111.014969
-
(2012)
Mol. Cell Proteomics
, vol.11
-
-
Mosca, R.1
Pache, R.A.2
Aloy, P.3
-
244
-
-
84871410405
-
The evolutionary landscape of alternative splicing in vertebrate species
-
Barbosa-Morais NL, IrimiaM, Pan Q, XiongHY, Gueroussov S, et al. 2012. The evolutionary landscape of alternative splicing in vertebrate species. Science 338:1587-93
-
(2012)
Science
, vol.338
, pp. 1587-1593
-
-
Barbosa-Morais, N.L.1
Irimia, M.2
Pan, Q.3
Xiong, H.Y.4
Gueroussov, S.5
-
245
-
-
84871436996
-
Evolutionary dynamics of gene and isoform regulation in mammalian tissues
-
Merkin J, Russell C, Chen P, Burge CB. 2012. Evolutionary dynamics of gene and isoform regulation in mammalian tissues. Science 338:1593-99
-
(2012)
Science
, vol.338
, pp. 1593-1599
-
-
Merkin, J.1
Russell, C.2
Chen, P.3
Burge, C.B.4
-
246
-
-
84876158670
-
The switches.elm resource: A compendium of conditional regulatory interaction interfaces
-
Van Roey K, Dinkel H, Weatheritt RJ, Gibson TJ, Davey NE. 2013. The switches.elm resource: a compendium of conditional regulatory interaction interfaces. Sci. Signal. 6:rs7
-
(2013)
Sci. Signal
, vol.6
-
-
Van Roey, K.1
Dinkel, H.2
Weatheritt, R.J.3
Gibson, T.J.4
Davey, N.E.5
-
247
-
-
84874071407
-
Intrinsically disordered regions of p53 family are highly diversified in evolution
-
Xue B, Brown CJ, Dunker AK, Uversky VN. 2013. Intrinsically disordered regions of p53 family are highly diversified in evolution. Biochim. Biophys. Acta 1834:725-38
-
(2013)
Biochim. Biophys. Acta
, vol.1834
, pp. 725-738
-
-
Xue, B.1
Brown, C.J.2
Dunker, A.K.3
Uversky, V.N.4
-
248
-
-
77949629173
-
Protein secondary structure appears to be robust under in silico evolution while protein disorder appears not to be
-
Schaefer C, Schlessinger A, Rost B. 2010. Protein secondary structure appears to be robust under in silico evolution while protein disorder appears not to be. Bioinformatics 26:625-31
-
(2010)
Bioinformatics
, vol.26
, pp. 625-631
-
-
Schaefer, C.1
Schlessinger, A.2
Rost, B.3
-
249
-
-
79958059909
-
Protein disorder-A breakthrough invention of evolution?
-
Schlessinger A, Schaefer C, Vicedo E, Schmidberger M, Punta M, Rost B. 2011. Protein disorder-A breakthrough invention of evolution? Curr. Opin. Struct. Biol. 21:412-18
-
(2011)
Curr. Opin. Struct. Biol
, vol.21
, pp. 412-418
-
-
Schlessinger, A.1
Schaefer, C.2
Vicedo, E.3
Schmidberger, M.4
Punta, M.5
Rost, B.6
-
250
-
-
67649635978
-
Intrinsic protein disorder and interaction promiscuity are widely associated with dosage sensitivity
-
Vavouri T, Semple JI, Garcia-Verdugo R, Lehner B. 2009. Intrinsic protein disorder and interaction promiscuity are widely associated with dosage sensitivity. Cell 138:198-208
-
(2009)
Cell
, vol.138
, pp. 198-208
-
-
Vavouri, T.1
Semple, J.I.2
Garcia-Verdugo, R.3
Lehner, B.4
-
251
-
-
57149116929
-
Tight regulation of unstructured proteins: From transcript synthesis to protein degradation
-
Gsponer J, Futschik ME, Teichmann SA, Babu MM. 2008. Tight regulation of unstructured proteins: from transcript synthesis to protein degradation. Science 322:1365-68
-
(2008)
Science
, vol.322
, pp. 1365-1368
-
-
Gsponer, J.1
Futschik, M.E.2
Teichmann, S.A.3
Babu, M.M.4
-
252
-
-
57149085681
-
Biochemistry: Controlled chaos
-
Uversky VN, Dunker AK. 2008. Biochemistry: controlled chaos. Science 322:1340-41
-
(2008)
Science
, vol.322
, pp. 1340-1341
-
-
Uversky, V.N.1
Dunker, A.K.2
-
253
-
-
23944514504
-
Structural disorder throws new light on moonlighting
-
Tompa P, Sz?szC, BudayL. 2005. Structural disorder throws new light on moonlighting. Trends Biochem. Sci. 30:484-89
-
(2005)
Trends Biochem. Sci
, vol.30
, pp. 484-489
-
-
Tompa, P.1
Szász, C.2
Buday, L.3
-
255
-
-
84884570252
-
Origins of myc proteins-using intrinsic disorder predictors to trace distant relatives
-
Mahani A, Henricksson J, Wright APH. 2013. Origins of myc proteins-using intrinsic disorder predictors to trace distant relatives. PLoS ONE 8:e75057
-
(2013)
PLoS ONE
, vol.8
-
-
Mahani, A.1
Henricksson, J.2
Aph, W.3
-
256
-
-
9644252804
-
Characterization of segments from the central region of BRCA1: An intrinsically disordered scaffold for multiple protein-protein and protein-DNA interactions?
-
Mark W-Y, Liao JCC, Lu Y, Ayed A, Laister R, et al. 2005. Characterization of segments from the central region of BRCA1: an intrinsically disordered scaffold for multiple protein-protein and protein-DNA interactions? J. Mol. Biol. 345:275-87
-
(2005)
J. Mol. Biol
, vol.345
, pp. 275-287
-
-
Mark, W.-Y.1
Jcc, L.2
Lu, Y.3
Ayed, A.4
Laister, R.5
-
257
-
-
84859510055
-
Roles for intrinsic disorder and fuzziness in generating context-specific function in ultrabithorax, a Hox transcription factor
-
Bondos SE, Hsiao H-C. 2012. Roles for intrinsic disorder and fuzziness in generating context-specific function in ultrabithorax, a Hox transcription factor. Adv. Exp. Med. Biol. 725:86-105
-
(2012)
Adv. Exp. Med. Biol
, vol.725
, pp. 86-105
-
-
Bondos, S.E.1
Hsiao, H.-C.2
-
262
-
-
0004053611
-
-
Hoboken, NJ Wiley4th ed
-
Voet D, Voet JG. 2010. Biochemistry. Hoboken, NJ: Wiley. 1428 pp. 4th ed.
-
(2010)
Biochemistry
, pp. 1428
-
-
Voet, D.1
Voet, J.G.2
|