-
1
-
-
80051968181
-
Needles in stacks of needles: finding disease-causal variants in a wealth of genomic data
-
Cooper GM, Shendure J, (2011) Needles in stacks of needles: finding disease-causal variants in a wealth of genomic data. Nat Rev Genet 12: 628-640.
-
(2011)
Nat Rev Genet
, vol.12
, pp. 628-640
-
-
Cooper, G.M.1
Shendure, J.2
-
2
-
-
77955590137
-
Human allelic variation: perspective from protein function, structure, and evolution
-
Jordan DM, Ramensky VE, Sunyaev SR, (2010) Human allelic variation: perspective from protein function, structure, and evolution. Curr Opin Struct Biol 20: 342-350.
-
(2010)
Curr Opin Struct Biol
, vol.20
, pp. 342-350
-
-
Jordan, D.M.1
Ramensky, V.E.2
Sunyaev, S.R.3
-
3
-
-
77952559401
-
Bioinformatic tools for identifying disease gene and SNP candidates
-
Mooney SD, Krishnan VG, Evani US, (2010) Bioinformatic tools for identifying disease gene and SNP candidates. Methods Mol Biol 628: 307-319.
-
(2010)
Methods Mol Biol
, vol.628
, pp. 307-319
-
-
Mooney, S.D.1
Krishnan, V.G.2
Evani, U.S.3
-
4
-
-
25144523127
-
Loss of protein structure stability as a major causative factor in monogenic disease
-
Yue P, Li Z, Moult J, (2005) Loss of protein structure stability as a major causative factor in monogenic disease. J Mol Biol 353: 459-473.
-
(2005)
J Mol Biol
, vol.353
, pp. 459-473
-
-
Yue, P.1
Li, Z.2
Moult, J.3
-
5
-
-
0036713510
-
Human non-synonymous SNPs: server and survey
-
Ramensky V, Bork P, Sunyaev S, (2002) Human non-synonymous SNPs: server and survey. Nucleic Acids Res 30: 3894-3900.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 3894-3900
-
-
Ramensky, V.1
Bork, P.2
Sunyaev, S.3
-
6
-
-
0035937259
-
Predicting the functional consequences of non-synonymous single nucleotide polymorphisms: structure-based assessment of amino acid variation
-
Chasman D, Adams RM, (2001) Predicting the functional consequences of non-synonymous single nucleotide polymorphisms: structure-based assessment of amino acid variation. J Mol Biol 307: 683-706.
-
(2001)
J Mol Biol
, vol.307
, pp. 683-706
-
-
Chasman, D.1
Adams, R.M.2
-
7
-
-
0035869223
-
Prediction of deleterious human alleles
-
Sunyaev S, Ramensky V, Koch I, Lathe W 3rd, Kondrashov AS, et al. (2001) Prediction of deleterious human alleles. Hum Mol Genet 10: 591-597.
-
(2001)
Hum Mol Genet
, vol.10
, pp. 591-597
-
-
Sunyaev, S.1
Ramensky, V.2
Koch, I.3
Lathe 3rd, W.4
Kondrashov, A.S.5
-
8
-
-
17444419765
-
Mapping SNPs to protein sequence and structure data
-
Cavallo A, Martin AC, (2005) Mapping SNPs to protein sequence and structure data. Bioinformatics 21: 1443-1450.
-
(2005)
Bioinformatics
, vol.21
, pp. 1443-1450
-
-
Cavallo, A.1
Martin, A.C.2
-
9
-
-
19544392545
-
Prediction of the phenotypic effects of non-synonymous single nucleotide polymorphisms using structural and evolutionary information
-
Bao L, Cui Y, (2005) Prediction of the phenotypic effects of non-synonymous single nucleotide polymorphisms using structural and evolutionary information. Bioinformatics 21: 2185-2190.
-
(2005)
Bioinformatics
, vol.21
, pp. 2185-2190
-
-
Bao, L.1
Cui, Y.2
-
10
-
-
68149165614
-
Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm
-
Kumar P, Henikoff S, Ng PC, (2009) Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm. Nat Protoc 4: 1073-1081.
-
(2009)
Nat Protoc
, vol.4
, pp. 1073-1081
-
-
Kumar, P.1
Henikoff, S.2
Ng, P.C.3
-
11
-
-
32044453591
-
Identification and analysis of deleterious human SNPs
-
Yue P, Moult J, (2006) Identification and analysis of deleterious human SNPs. J Mol Biol 356: 1263-1274.
-
(2006)
J Mol Biol
, vol.356
, pp. 1263-1274
-
-
Yue, P.1
Moult, J.2
-
12
-
-
0035026704
-
Predicting deleterious amino acid substitutions
-
Ng PC, Henikoff S, (2001) Predicting deleterious amino acid substitutions. Genome Res 11: 863-874.
-
(2001)
Genome Res
, vol.11
, pp. 863-874
-
-
Ng, P.C.1
Henikoff, S.2
-
13
-
-
0036387236
-
Evaluation of structural and evolutionary contributions to deleterious mutation prediction
-
Saunders CT, Baker D, (2002) Evaluation of structural and evolutionary contributions to deleterious mutation prediction. J Mol Biol 322: 891-901.
-
(2002)
J Mol Biol
, vol.322
, pp. 891-901
-
-
Saunders, C.T.1
Baker, D.2
-
14
-
-
77149174136
-
In silico functional profiling of human disease-associated and polymorphic amino acid substitutions
-
Mort M, Evani US, Krishnan VG, Kamati KK, Baenziger PH, et al. (2010) In silico functional profiling of human disease-associated and polymorphic amino acid substitutions. Hum Mutat 31: 335-346.
-
(2010)
Hum Mutat
, vol.31
, pp. 335-346
-
-
Mort, M.1
Evani, U.S.2
Krishnan, V.G.3
Kamati, K.K.4
Baenziger, P.H.5
-
15
-
-
0032749078
-
Intrinsically unstructured proteins: re-assessing the protein structure-function paradigm
-
Wright PE, Dyson HJ, (1999) Intrinsically unstructured proteins: re-assessing the protein structure-function paradigm. J Mol Biol 293: 321-331.
-
(1999)
J Mol Biol
, vol.293
, pp. 321-331
-
-
Wright, P.E.1
Dyson, H.J.2
-
16
-
-
0035022941
-
Intrinsically disordered protein
-
Dunker AK, Lawson JD, Brown CJ, Williams RM, Romero P, et al. (2001) Intrinsically disordered protein. J Mol Graph Model 19: 26-59.
-
(2001)
J Mol Graph Model
, vol.19
, pp. 26-59
-
-
Dunker, A.K.1
Lawson, J.D.2
Brown, C.J.3
Williams, R.M.4
Romero, P.5
-
17
-
-
0036803243
-
Intrinsically unstructured proteins
-
Tompa P, (2002) Intrinsically unstructured proteins. Trends Biochem Sci 27.
-
(2002)
Trends Biochem Sci
, vol.27
-
-
Tompa, P.1
-
18
-
-
0034669882
-
Why are "natively unfolded" proteins unstructured under physiologic conditions
-
Uversky V, Gillespie J, Fink A, (2000) Why are "natively unfolded" proteins unstructured under physiologic conditions? Proteins 41: 415-427.
-
(2000)
Proteins
, vol.41
, pp. 415-427
-
-
Uversky, V.1
Gillespie, J.2
Fink, A.3
-
19
-
-
1542358787
-
Prediction and functional analysis of native disorder in proteins from the three kingdoms of life
-
Ward JJ, Sodhi JS, McGuffin LJ, Buxton BF, Jones DT, (2004) Prediction and functional analysis of native disorder in proteins from the three kingdoms of life. J Mol Biol 337: 635-645.
-
(2004)
J Mol Biol
, vol.337
, pp. 635-645
-
-
Ward, J.J.1
Sodhi, J.S.2
McGuffin, L.J.3
Buxton, B.F.4
Jones, D.T.5
-
20
-
-
0036408751
-
Intrinsic disorder in cell-signaling and cancer-associated proteins
-
Iakoucheva LM, Brown CJ, Lawson JD, Obradovic Z, Dunker AK, (2002) Intrinsic disorder in cell-signaling and cancer-associated proteins. J Mol Biol 323: 573-584.
-
(2002)
J Mol Biol
, vol.323
, pp. 573-584
-
-
Iakoucheva, L.M.1
Brown, C.J.2
Lawson, J.D.3
Obradovic, Z.4
Dunker, A.K.5
-
21
-
-
25144472591
-
Showing your ID: intrinsic disorder as an ID for recognition, regulation and cell signaling
-
Uversky VN, Oldfield CJ, Dunker AK, (2005) Showing your ID: intrinsic disorder as an ID for recognition, regulation and cell signaling. J Mol Recognit 18: 343-384.
-
(2005)
J Mol Recognit
, vol.18
, pp. 343-384
-
-
Uversky, V.N.1
Oldfield, C.J.2
Dunker, A.K.3
-
22
-
-
2342473198
-
The importance of intrinsic disorder for protein phosphorylation
-
Iakoucheva LM, Radivojac P, Brown CJ, O'Connor TR, Sikes JG, et al. (2004) The importance of intrinsic disorder for protein phosphorylation. Nucleic Acids Res 32: 1037-1049.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1037-1049
-
-
Iakoucheva, L.M.1
Radivojac, P.2
Brown, C.J.3
O'Connor, T.R.4
Sikes, J.G.5
-
23
-
-
77449103113
-
Identification, analysis, and prediction of protein ubiquitination sites
-
Radivojac P, Vacic V, Haynes C, Cocklin RR, Mohan A, et al. (2010) Identification, analysis, and prediction of protein ubiquitination sites. Proteins 78: 365-580.
-
(2010)
Proteins
, vol.78
, pp. 365-580
-
-
Radivojac, P.1
Vacic, V.2
Haynes, C.3
Cocklin, R.R.4
Mohan, A.5
-
24
-
-
33748074139
-
Intrinsic disorder is a common feature of hub proteins from four eukaryotic interactomes
-
Haynes C, Oldfield CJ, Ji F, Klitgord N, Cusick ME, et al. (2006) Intrinsic disorder is a common feature of hub proteins from four eukaryotic interactomes. PLoS Comput Biol 2: e100.
-
(2006)
PLoS Comput Biol
, vol.2
-
-
Haynes, C.1
Oldfield, C.J.2
Ji, F.3
Klitgord, N.4
Cusick, M.E.5
-
25
-
-
33745686603
-
What properties characterize the hub proteins of the protein-protein interaction network of Saccharomyces cerevisiae
-
Ekman D, Light S, Bjorklund AK, Elofsson A, (2006) What properties characterize the hub proteins of the protein-protein interaction network of Saccharomyces cerevisiae? Genome Biol 7: R45.
-
(2006)
Genome Biol
, vol.7
-
-
Ekman, D.1
Light, S.2
Bjorklund, A.K.3
Elofsson, A.4
-
26
-
-
27144464910
-
Flexible nets. The roles of intrinsic disorder in protein interaction networks
-
Dunker AK, Cortese MS, Romero P, Iakoucheva LM, Uversky VN, (2005) Flexible nets. The roles of intrinsic disorder in protein interaction networks. Febs J 272: 5129-5148.
-
(2005)
Febs J
, vol.272
, pp. 5129-5148
-
-
Dunker, A.K.1
Cortese, M.S.2
Romero, P.3
Iakoucheva, L.M.4
Uversky, V.N.5
-
28
-
-
0037188377
-
Intrinsic disorder and protein function
-
Dunker AK, Brown CJ, Lawson JD, Iakoucheva LM, Obradovic Z, (2002) Intrinsic disorder and protein function. Biochemistry 41: 6573-6582.
-
(2002)
Biochemistry
, vol.41
, pp. 6573-6582
-
-
Dunker, A.K.1
Brown, C.J.2
Lawson, J.D.3
Iakoucheva, L.M.4
Obradovic, Z.5
-
29
-
-
33847768609
-
Functional anthology of intrinsic disorder. 1. Biological processes and functions of proteins with long disordered regions
-
Xie H, Vucetic S, Iakoucheva LM, Oldfield CJ, Dunker AK, et al. (2007) Functional anthology of intrinsic disorder. 1. Biological processes and functions of proteins with long disordered regions. J Proteome Res 6: 1882-1898.
-
(2007)
J Proteome Res
, vol.6
, pp. 1882-1898
-
-
Xie, H.1
Vucetic, S.2
Iakoucheva, L.M.3
Oldfield, C.J.4
Dunker, A.K.5
-
30
-
-
34249282661
-
Functional anthology of intrinsic disorder. 2. Cellular components, domains, technical terms, developmental processes, and coding sequence diversities correlated with long disordered regions
-
Vucetic S, Xie H, Iakoucheva LM, Oldfield CJ, Dunker AK, et al. (2007) Functional anthology of intrinsic disorder. 2. Cellular components, domains, technical terms, developmental processes, and coding sequence diversities correlated with long disordered regions. J Proteome Res 6: 1899-1916.
-
(2007)
J Proteome Res
, vol.6
, pp. 1899-1916
-
-
Vucetic, S.1
Xie, H.2
Iakoucheva, L.M.3
Oldfield, C.J.4
Dunker, A.K.5
-
31
-
-
33847783298
-
Functional anthology of intrinsic disorder. 3. Ligands, post-translational modifications, and diseases associated with intrinsically disordered proteins
-
Xie H, Vucetic S, Iakoucheva LM, Oldfield CJ, Dunker AK, et al. (2007) Functional anthology of intrinsic disorder. 3. Ligands, post-translational modifications, and diseases associated with intrinsically disordered proteins. J Proteome Res 6: 1917-1932.
-
(2007)
J Proteome Res
, vol.6
, pp. 1917-1932
-
-
Xie, H.1
Vucetic, S.2
Iakoucheva, L.M.3
Oldfield, C.J.4
Dunker, A.K.5
-
33
-
-
79851508882
-
Bringing order to protein disorder through comparative genomics and genetic interactions
-
Bellay J, Han S, Michaut M, Kim T, Costanzo M, et al. (2011) Bringing order to protein disorder through comparative genomics and genetic interactions. Genome Biol 12: R14.
-
(2011)
Genome Biol
, vol.12
-
-
Bellay, J.1
Han, S.2
Michaut, M.3
Kim, T.4
Costanzo, M.5
-
34
-
-
48249097986
-
Intrinsically disordered proteins in human diseases: introducing the D2 concept
-
Uversky VN, Oldfield CJ, Dunker AK, (2008) Intrinsically disordered proteins in human diseases: introducing the D2 concept. Annu Rev Biophys 37: 215-246.
-
(2008)
Annu Rev Biophys
, vol.37
, pp. 215-246
-
-
Uversky, V.N.1
Oldfield, C.J.2
Dunker, A.K.3
-
35
-
-
79958072421
-
Intrinsically disordered proteins: regulation and disease
-
Babu MM, van der Lee R, de Groot NS, Gsponer J, (2011) Intrinsically disordered proteins: regulation and disease. Curr Opin Struct Biol 21: 432-440.
-
(2011)
Curr Opin Struct Biol
, vol.21
, pp. 432-440
-
-
Babu, M.M.1
van der Lee, R.2
de Groot, N.S.3
Gsponer, J.4
-
36
-
-
0001913048
-
Predicting protein disorder for N-, C-, and internal regions
-
Li X, Romero P, Rani M, Dunker AK, Obradovic Z, (1999) Predicting protein disorder for N-, C-, and internal regions. Genome Inform 10: 30-40.
-
(1999)
Genome Inform
, vol.10
, pp. 30-40
-
-
Li, X.1
Romero, P.2
Rani, M.3
Dunker, A.K.4
Obradovic, Z.5
-
37
-
-
33745289067
-
Length-dependent prediction of protein intrinsic disorder
-
Peng K, Radivojac P, Vucetic S, Dunker AK, Obradovic Z, (2006) Length-dependent prediction of protein intrinsic disorder. BMC Bioinformatics 7: 208.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 208
-
-
Peng, K.1
Radivojac, P.2
Vucetic, S.3
Dunker, A.K.4
Obradovic, Z.5
-
38
-
-
24044538903
-
IUPred: web server for the prediction of intrinsically unstructured regions of proteins based on estimated energy content
-
Dosztanyi Z, Csizmok V, Tompa P, Simon I, (2005) IUPred: web server for the prediction of intrinsically unstructured regions of proteins based on estimated energy content. Bioinformatics 21: 3433-3434.
-
(2005)
Bioinformatics
, vol.21
, pp. 3433-3434
-
-
Dosztanyi, Z.1
Csizmok, V.2
Tompa, P.3
Simon, I.4
-
39
-
-
0029889988
-
PHD: predicting one-dimensional protein structure by profile-based neural networks
-
Rost B, (1996) PHD: predicting one-dimensional protein structure by profile-based neural networks. Methods Enzymol 266: 525-539.
-
(1996)
Methods Enzymol
, vol.266
, pp. 525-539
-
-
Rost, B.1
-
41
-
-
2142757231
-
Preformed structural elements feature in partner recognition by intrinsically unstructured proteins
-
Fuxreiter M, Simon I, Friedrich P, Tompa P, (2004) Preformed structural elements feature in partner recognition by intrinsically unstructured proteins. J Mol Biol 338: 1015-1026.
-
(2004)
J Mol Biol
, vol.338
, pp. 1015-1026
-
-
Fuxreiter, M.1
Simon, I.2
Friedrich, P.3
Tompa, P.4
-
42
-
-
0036968309
-
Loopy proteins appear conserved in evolution
-
Liu J, Tan H, Rost B, (2002) Loopy proteins appear conserved in evolution. J Mol Biol 322: 53-64.
-
(2002)
J Mol Biol
, vol.322
, pp. 53-64
-
-
Liu, J.1
Tan, H.2
Rost, B.3
-
43
-
-
34548750953
-
Natively unstructured regions in proteins identified from contact predictions
-
Schlessinger A, Punta M, Rost B, (2007) Natively unstructured regions in proteins identified from contact predictions. Bioinformatics 23: 2376-2384.
-
(2007)
Bioinformatics
, vol.23
, pp. 2376-2384
-
-
Schlessinger, A.1
Punta, M.2
Rost, B.3
-
44
-
-
24944546549
-
Coupled folding and binding with alpha-helix-forming molecular recognition elements
-
Oldfield CJ, Cheng Y, Cortese MS, Romero P, Uversky VN, et al. (2005) Coupled folding and binding with alpha-helix-forming molecular recognition elements. Biochemistry 44: 12454-12470.
-
(2005)
Biochemistry
, vol.44
, pp. 12454-12470
-
-
Oldfield, C.J.1
Cheng, Y.2
Cortese, M.S.3
Romero, P.4
Uversky, V.N.5
-
45
-
-
0036468397
-
Coupling of folding and binding for unstructured proteins
-
Dyson HJ, Wright PE, (2002) Coupling of folding and binding for unstructured proteins. Curr Opin Struct Biol 12: 54-60.
-
(2002)
Curr Opin Struct Biol
, vol.12
, pp. 54-60
-
-
Dyson, H.J.1
Wright, P.E.2
-
47
-
-
33748456399
-
Analysis of molecular recognition features (MoRFs)
-
Mohan A, Oldfield CJ, Radivojac P, Vacic V, Cortese MS, et al. (2006) Analysis of molecular recognition features (MoRFs). J Mol Biol 362: 1043-1059.
-
(2006)
J Mol Biol
, vol.362
, pp. 1043-1059
-
-
Mohan, A.1
Oldfield, C.J.2
Radivojac, P.3
Vacic, V.4
Cortese, M.S.5
-
48
-
-
84859051901
-
ELM-the database of eukaryotic linear motifs
-
Dinkel H, Michael S, Weatheritt RJ, Davey NE, Van Roey K, et al. (2012) ELM-the database of eukaryotic linear motifs. Nucleic Acids Res 40: D242-251.
-
(2012)
Nucleic Acids Res
, vol.40
-
-
Dinkel, H.1
Michael, S.2
Weatheritt, R.J.3
Davey, N.E.4
van Roey, K.5
-
49
-
-
34249695447
-
Local structural disorder imparts plasticity on linear motifs
-
Fuxreiter M, Tompa P, Simon I, (2007) Local structural disorder imparts plasticity on linear motifs. Bioinformatics 23: 950-956.
-
(2007)
Bioinformatics
, vol.23
, pp. 950-956
-
-
Fuxreiter, M.1
Tompa, P.2
Simon, I.3
-
50
-
-
0035253047
-
Zinc finger proteins: new insights into structural and functional diversity
-
Laity JH, Lee BM, Wright PE, (2001) Zinc finger proteins: new insights into structural and functional diversity. Curr Opin Struct Biol 11: 39-46.
-
(2001)
Curr Opin Struct Biol
, vol.11
, pp. 39-46
-
-
Laity, J.H.1
Lee, B.M.2
Wright, P.E.3
-
51
-
-
0030056114
-
Identification of the phospholipid binding site in the vitamin K-dependent blood coagulation protein factor IX
-
Freedman SJ, Blostein MD, Baleja JD, Jacobs M, Furie BC, et al. (1996) Identification of the phospholipid binding site in the vitamin K-dependent blood coagulation protein factor IX. J Biol Chem 271: 16227-16236.
-
(1996)
J Biol Chem
, vol.271
, pp. 16227-16236
-
-
Freedman, S.J.1
Blostein, M.D.2
Baleja, J.D.3
Jacobs, M.4
Furie, B.C.5
-
52
-
-
23444450909
-
Coupling of local folding to site-specific binding of proteins to DNA
-
Spolar RS, Record MT II, (1994) Coupling of local folding to site-specific binding of proteins to DNA. Science 263: 777-784.
-
(1994)
Science
, vol.263
, pp. 777-784
-
-
Spolar, R.S.1
Record II, M.T.2
-
53
-
-
77249102545
-
Comparing models of evolution for ordered and disordered proteins
-
Brown CJ, Johnson AK, Daughdrill GW, (2010) Comparing models of evolution for ordered and disordered proteins. Mol Biol Evol 27: 609-621.
-
(2010)
Mol Biol Evol
, vol.27
, pp. 609-621
-
-
Brown, C.J.1
Johnson, A.K.2
Daughdrill, G.W.3
-
54
-
-
52249124593
-
TOP-IDP-scale: a new amino acid scale measuring propensity for intrinsic disorder
-
Campen A, Williams RM, Brown CJ, Meng J, Uversky VN, et al. (2008) TOP-IDP-scale: a new amino acid scale measuring propensity for intrinsic disorder. Protein Pept Lett 15: 956-963.
-
(2008)
Protein Pept Lett
, vol.15
, pp. 956-963
-
-
Campen, A.1
Williams, R.M.2
Brown, C.J.3
Meng, J.4
Uversky, V.N.5
-
55
-
-
34447539760
-
Composition Profiler: a tool for discovery and visualization of amino acid composition differences
-
Vacic V, Uversky VN, Dunker AK, Lonardi S, (2007) Composition Profiler: a tool for discovery and visualization of amino acid composition differences. BMC Bioinformatics 8: 211.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 211
-
-
Vacic, V.1
Uversky, V.N.2
Dunker, A.K.3
Lonardi, S.4
-
56
-
-
0042830297
-
Molecular basis of inherited diseases: a structural perspective
-
Steward RE, MacArthur MW, Laskowski RA, Thornton JM, (2003) Molecular basis of inherited diseases: a structural perspective. Trends Genet 19: 505-513.
-
(2003)
Trends Genet
, vol.19
, pp. 505-513
-
-
Steward, R.E.1
MacArthur, M.W.2
Laskowski, R.A.3
Thornton, J.M.4
-
57
-
-
1542577828
-
The amino-acid mutational spectrum of human genetic disease
-
Vitkup D, Sander C, Church GM, (2003) The amino-acid mutational spectrum of human genetic disease. Genome Biol 4: R72.
-
(2003)
Genome Biol
, vol.4
-
-
Vitkup, D.1
Sander, C.2
Church, G.M.3
-
58
-
-
77951640946
-
A method and server for predicting damaging missense mutations
-
Adzhubei IA, Schmidt S, Peshkin L, Ramensky VE, Gerasimova A, et al. (2010) A method and server for predicting damaging missense mutations. Nat Methods 7: 248-249.
-
(2010)
Nat Methods
, vol.7
, pp. 248-249
-
-
Adzhubei, I.A.1
Schmidt, S.2
Peshkin, L.3
Ramensky, V.E.4
Gerasimova, A.5
-
59
-
-
82655179908
-
Disease mutations in disordered regions-exception to the rule
-
Vacic V, Iakoucheva LM, (2012) Disease mutations in disordered regions-exception to the rule? Mol Biosyst 8: 27-32.
-
(2012)
Mol Biosyst
, vol.8
, pp. 27-32
-
-
Vacic, V.1
Iakoucheva, L.M.2
-
60
-
-
0032161624
-
p63, a p53 homolog at 3q27-29, encodes multiple products with transactivating, death-inducing, and dominant-negative activities
-
Yang A, Kaghad M, Wang Y, Gillett E, Fleming MD, et al. (1998) p63, a p53 homolog at 3q27-29, encodes multiple products with transactivating, death-inducing, and dominant-negative activities. Mol Cell 2: 305-316.
-
(1998)
Mol Cell
, vol.2
, pp. 305-316
-
-
Yang, A.1
Kaghad, M.2
Wang, Y.3
Gillett, E.4
Fleming, M.D.5
-
61
-
-
0031852337
-
Cloning and functional analysis of human p51, which structurally and functionally resembles p53
-
Osada M, Ohba M, Kawahara C, Ishioka C, Kanamaru R, et al. (1998) Cloning and functional analysis of human p51, which structurally and functionally resembles p53. Nat Med 4: 839-843.
-
(1998)
Nat Med
, vol.4
, pp. 839-843
-
-
Osada, M.1
Ohba, M.2
Kawahara, C.3
Ishioka, C.4
Kanamaru, R.5
-
62
-
-
0032744735
-
Heterozygous germline mutations in the p53 homolog p63 are the cause of EEC syndrome
-
Celli J, Duijf P, Hamel BC, Bamshad M, Kramer B, et al. (1999) Heterozygous germline mutations in the p53 homolog p63 are the cause of EEC syndrome. Cell 99: 143-153.
-
(1999)
Cell
, vol.99
, pp. 143-153
-
-
Celli, J.1
Duijf, P.2
Hamel, B.C.3
Bamshad, M.4
Kramer, B.5
-
63
-
-
79955609976
-
Structures of p63 DNA binding domain in complexes with half-site and with spacer-containing full response elements
-
Chen C, Gorlatova N, Kelman Z, Herzberg O, (2011) Structures of p63 DNA binding domain in complexes with half-site and with spacer-containing full response elements. Proc Natl Acad Sci U S A 108: 6456-6461.
-
(2011)
Proc Natl Acad Sci U S A
, vol.108
, pp. 6456-6461
-
-
Chen, C.1
Gorlatova, N.2
Kelman, Z.3
Herzberg, O.4
-
64
-
-
33744961763
-
Intrinsic disorder in transcription factors
-
Liu J, Perumal NB, Oldfield CJ, Su EW, Uversky VN, et al. (2006) Intrinsic disorder in transcription factors. Biochemistry 45: 6873-6888.
-
(2006)
Biochemistry
, vol.45
, pp. 6873-6888
-
-
Liu, J.1
Perumal, N.B.2
Oldfield, C.J.3
Su, E.W.4
Uversky, V.N.5
-
65
-
-
84864542839
-
Intrinsic disorder within and flanking the DNA-binding domains of human transcription factors
-
Guo X, Bulyk ML, Hartemink AJ, (2012) Intrinsic disorder within and flanking the DNA-binding domains of human transcription factors. Pac Symp Biocomput pp. 104-115.
-
(2012)
Pac Symp Biocomput
, pp. 104-115
-
-
Guo, X.1
Bulyk, M.L.2
Hartemink, A.J.3
-
66
-
-
0032546749
-
A disorder-to-order transition coupled to DNA binding in the essential zinc-finger DNA-binding domain of yeast ADR1
-
Hyre DE, Klevit RE, (1998) A disorder-to-order transition coupled to DNA binding in the essential zinc-finger DNA-binding domain of yeast ADR1. J Mol Biol 279: 929-943.
-
(1998)
J Mol Biol
, vol.279
, pp. 929-943
-
-
Hyre, D.E.1
Klevit, R.E.2
-
67
-
-
3142716857
-
Accelerated molecular dynamics: a promising and efficient simulation method for biomolecules
-
Hamelberg D, Mongan J, McCammon JA, (2004) Accelerated molecular dynamics: a promising and efficient simulation method for biomolecules. J Chem Phys 120: 11919-11929.
-
(2004)
J Chem Phys
, vol.120
, pp. 11919-11929
-
-
Hamelberg, D.1
Mongan, J.2
McCammon, J.A.3
-
68
-
-
81255138340
-
Studying functional dynamics in bio-molecules using accelerated molecular dynamics
-
Markwick PR, McCammon JA, (2011) Studying functional dynamics in bio-molecules using accelerated molecular dynamics. Phys Chem Chem Phys 13: 20053-20065.
-
(2011)
Phys Chem Chem Phys
, vol.13
, pp. 20053-20065
-
-
Markwick, P.R.1
McCammon, J.A.2
-
69
-
-
34247499863
-
Highly populated turn conformations in natively unfolded tau protein identified from residual dipolar couplings and molecular simulation
-
Mukrasch MD, Markwick P, Biernat J, Bergen M, Bernado P, et al. (2007) Highly populated turn conformations in natively unfolded tau protein identified from residual dipolar couplings and molecular simulation. J Am Chem Soc 129: 5235-5243.
-
(2007)
J Am Chem Soc
, vol.129
, pp. 5235-5243
-
-
Mukrasch, M.D.1
Markwick, P.2
Biernat, J.3
Bergen, M.4
Bernado, P.5
-
70
-
-
70450237199
-
Toward a unified representation of protein structural dynamics in solution
-
Markwick PR, Bouvignies G, Salmon L, McCammon JA, Nilges M, et al. (2009) Toward a unified representation of protein structural dynamics in solution. J Am Chem Soc 131: 16968-16975.
-
(2009)
J Am Chem Soc
, vol.131
, pp. 16968-16975
-
-
Markwick, P.R.1
Bouvignies, G.2
Salmon, L.3
McCammon, J.A.4
Nilges, M.5
-
71
-
-
77449117443
-
Large-scale analysis of secondary structure changes in proteins suggests a role for disorder-to-order transitions in nucleotide binding proteins
-
Dan A, Ofran Y, Kliger Y, (2010) Large-scale analysis of secondary structure changes in proteins suggests a role for disorder-to-order transitions in nucleotide binding proteins. Proteins 78: 236-248.
-
(2010)
Proteins
, vol.78
, pp. 236-248
-
-
Dan, A.1
Ofran, Y.2
Kliger, Y.3
-
72
-
-
48249116424
-
Congenital disease SNPs target lineage specific structural elements in protein kinases
-
Torkamani A, Kannan N, Taylor SS, Schork NJ, (2008) Congenital disease SNPs target lineage specific structural elements in protein kinases. Proc Natl Acad Sci U S A 105: 9011-9016.
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, pp. 9011-9016
-
-
Torkamani, A.1
Kannan, N.2
Taylor, S.S.3
Schork, N.J.4
-
73
-
-
77949629173
-
Protein secondary structure appears to be robust under in silico evolution while protein disorder appears not to be
-
Schaefer C, Schlessinger A, Rost B, (2010) Protein secondary structure appears to be robust under in silico evolution while protein disorder appears not to be. Bioinformatics 26: 625-631.
-
(2010)
Bioinformatics
, vol.26
, pp. 625-631
-
-
Schaefer, C.1
Schlessinger, A.2
Rost, B.3
-
75
-
-
33645778262
-
Conservation of intrinsic disorder in protein domains and families: I. A database of conserved predicted disordered regions
-
Chen JW, Romero P, Uversky VN, Dunker AK, (2006) Conservation of intrinsic disorder in protein domains and families: I. A database of conserved predicted disordered regions. J Proteome Res 5: 879-887.
-
(2006)
J Proteome Res
, vol.5
, pp. 879-887
-
-
Chen, J.W.1
Romero, P.2
Uversky, V.N.3
Dunker, A.K.4
-
76
-
-
34147100153
-
Deleterious SNP prediction: be mindful of your training data!
-
Care MA, Needham CJ, Bulpitt AJ, Westhead DR, (2007) Deleterious SNP prediction: be mindful of your training data!. Bioinformatics 23: 664-672.
-
(2007)
Bioinformatics
, vol.23
, pp. 664-672
-
-
Care, M.A.1
Needham, C.J.2
Bulpitt, A.J.3
Westhead, D.R.4
-
77
-
-
40549095676
-
Annotating single amino acid polymorphisms in the UniProt/Swiss-Prot knowledgebase
-
Yip YL, Famiglietti M, Gos A, Duek PD, David FP, et al. (2008) Annotating single amino acid polymorphisms in the UniProt/Swiss-Prot knowledgebase. Hum Mutat 29: 361-366.
-
(2008)
Hum Mutat
, vol.29
, pp. 361-366
-
-
Yip, Y.L.1
Famiglietti, M.2
Gos, A.3
Duek, P.D.4
David, F.P.5
-
78
-
-
0034191958
-
Towards a structural basis of human non-synonymous single nucleotide polymorphisms
-
Sunyaev S, Ramensky V, Bork P, (2000) Towards a structural basis of human non-synonymous single nucleotide polymorphisms. Trends Genet 16: 198-200.
-
(2000)
Trends Genet
, vol.16
, pp. 198-200
-
-
Sunyaev, S.1
Ramensky, V.2
Bork, P.3
-
79
-
-
3042666256
-
MUSCLE: multiple sequence alignment with high accuracy and high throughput
-
Edgar RC, (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32: 1792-1797.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
81
-
-
0027169638
-
Improved prediction of protein secondary structure by use of sequence profiles and neural networks
-
Rost B, Sander C, (1993) Improved prediction of protein secondary structure by use of sequence profiles and neural networks. Proc Natl Acad Sci U S A USA 90: 7558-7562.
-
(1993)
Proc Natl Acad Sci U S A USA
, vol.90
, pp. 7558-7562
-
-
Rost, B.1
Sander, C.2
-
82
-
-
23444454552
-
The Amber biomolecular simulation programs
-
Case DA, Cheatham TE 3rd, Darden T, Gohlke H, Luo R, et al. (2005) The Amber biomolecular simulation programs. J Comput Chem 26: 1668-1688.
-
(2005)
J Comput Chem
, vol.26
, pp. 1668-1688
-
-
Case, D.A.1
Cheatham 3rd, T.E.2
Darden, T.3
Gohlke, H.4
Luo, R.5
-
83
-
-
0028361031
-
Accuracy of protein flexibility predictions
-
Vihinen M, Torkkila E, Riikonen P, (1994) Accuracy of protein flexibility predictions. Proteins 19: 141-149.
-
(1994)
Proteins
, vol.19
, pp. 141-149
-
-
Vihinen, M.1
Torkkila, E.2
Riikonen, P.3
|