-
1
-
-
2942562178
-
XLalphas, the extra-long form of the alpha-subunit of the Gs G protein, is significantly longer than suspected, and so is its companion Alex
-
Abramowitz, J., D. Grenet, M. Birnbaumer, H. N. Torres, and L. Birnbaumer. 2004. XLalphas, the extra-long form of the alpha-subunit of the Gs G protein, is significantly longer than suspected, and so is its companion Alex. Proc. Natl. Acad. Sci. USA 101:8366-8371.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 8366-8371
-
-
Abramowitz, J.1
Grenet, D.2
Birnbaumer, M.3
Torres, H.N.4
Birnbaumer, L.5
-
2
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul, S. F., T. L. Madden, A. A. Schaffer, J. Zhang, Z. Zhang, W. Miller, and D. J. Lipman. 1997. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25:3389-3402.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
3
-
-
38549153238
-
Data growth and its impact on the SCOP database: New developments
-
DOI 10.1093/nar/gkm993
-
Andreeva, A., D. Howorth, J. M. Chandonia, S. E. Brenner, T. J. Hubbard, C. Chothia, and A. G. Murzin. 2008. Data growth and its impact on the SCOP database: new developments. Nucleic Acids Res. 36:D419-D425. (Pubitemid 351149760)
-
(2008)
Nucleic Acids Research
, vol.36
, Issue.SUPPL. 1
-
-
Andreeva, A.1
Howorth, D.2
Chandonia, J.-M.3
Brenner, S.E.4
Hubbard, T.J.P.5
Chothia, C.6
Murzin, A.G.7
-
4
-
-
13444273448
-
The Universal Protein Resource (UniProt)
-
Bairoch, A., R. Apweiler, C. H. Wu, W. C. Barker, B. Boeckmann, S. Ferro, E. Gasteiger, H. Huang, R. Lopez, M. Magrane, M. J. Martin, D. A. Natale, C. O'Donovan, N. Redaschi, and L. S. Yeh. 2005. The Universal Protein Resource (UniProt). Nucleic Acids Res. 33:D154-D159.
-
(2005)
Nucleic Acids Res.
, vol.33
-
-
Bairoch, A.1
Apweiler, R.2
Wu, C.H.3
Barker, W.C.4
Boeckmann, B.5
Ferro, S.6
Gasteiger, E.7
Huang, H.8
Lopez, R.9
Magrane, M.10
Martin, M.J.11
Natale, D.A.12
O'Donovan, C.13
Redaschi, N.14
Yeh, L.S.15
-
5
-
-
57649157806
-
Virus replication strategies
-
D. M. Knipe and P. M. Howley (ed.), Lippincott Williams & Wilkins, Philadelphia, PA
-
Ball, L. A. 2007. Virus replication strategies, p. 119-139. In D. M. Knipe and P. M. Howley (ed.), Fields virology, 5th ed., vol.1. Lippincott Williams & Wilkins, Philadelphia, PA.
-
(2007)
Fields Virology, 5th Ed.
, vol.1
, pp. 119-139
-
-
Ball, L.A.1
-
6
-
-
3142738149
-
National Center for Biotechnology Information Viral Genomes Project
-
DOI 10.1128/JVI.78.14.7291-7298.2004
-
Bao, Y., S. Federhen, D. Leipe, V. Pham, S. Resenchuk, M. Rozanov, R. Tatusov, and T. Tatusova. 2004. National center for biotechnology information viral genomes project. J. Virol. 78:7291-7298. (Pubitemid 38915875)
-
(2004)
Journal of Virology
, vol.78
, Issue.14
, pp. 7291-7298
-
-
Bao, Y.1
Federhen, S.2
Leipe, D.3
Pham, V.4
Resenchuk, S.5
Rozanov, M.6
Tatusov, R.7
Tatusova, T.8
-
8
-
-
34948894065
-
The evolution of genome compression and genomic novelty in RNA viruses
-
DOI 10.1101/gr.6305707
-
Belshaw, R., O. G. Pybus, and A. Rambaut. 2007. The evolution of genome compression and genomic novelty in RNA viruses. Genome Res. 17:1496-1504. (Pubitemid 47529434)
-
(2007)
Genome Research
, vol.17
, Issue.10
, pp. 1496-1504
-
-
Belshaw, R.1
Pybus, O.G.2
Rambaut, A.3
-
9
-
-
38549141229
-
Exploring the extremes of sequence/structure space with ensemble fold recognition in the program Phyre
-
Bennett-Lovsey, R. M., A. D. Herbert, M. J. Sternberg, and L. A. Kelley. 2008. Exploring the extremes of sequence/structure space with ensemble fold recognition in the program Phyre. Proteins 70:611-625.
-
(2008)
Proteins
, vol.70
, pp. 611-625
-
-
Bennett-Lovsey, R.M.1
Herbert, A.D.2
Sternberg, M.J.3
Kelley, L.A.4
-
10
-
-
0036616218
-
The Protein Data Bank
-
Berman, H. M., T. Battistuz, T. N. Bhat, W. F. Bluhm, P. E. Bourne, K. Burkhardt, Z. Feng, G. L. Gilliland, L. Iype, S. Jain, P. Fagan, J. Marvin, D. Padilla, V. Ravichandran, B. Schneider, N. Thanki, H. Weissig, J. D. Westbrook, and C. Zardecki. 2002. The Protein Data Bank. Acta Crystallogr. D 58:899-907.
-
(2002)
Acta Crystallogr. D
, vol.58
, pp. 899-907
-
-
Berman, H.M.1
Battistuz, T.2
Bhat, T.N.3
Bluhm, W.F.4
Bourne, P.E.5
Burkhardt, K.6
Feng, Z.7
Gilliland, G.L.8
Iype, L.9
Jain, S.10
Fagan, P.11
Marvin, J.12
Padilla, D.13
Ravichandran, V.14
Schneider, B.15
Thanki, N.16
Weissig, H.17
Westbrook, J.D.18
Zardecki, C.19
-
11
-
-
33747856166
-
The MPI Bioinformatics Toolkit for protein sequence analysis
-
DOI 10.1093/nar/gkl217
-
Biegert, A., C. Mayer, M. Remmert, J. Soding, and A. N. Lupas. 2006. The MPI bioinformatics toolkit for protein sequence analysis. Nucleic Acids Res. 34:W335-W339. (Pubitemid 44529789)
-
(2006)
Nucleic Acids Research
, vol.34
, Issue.WEB. SERV. ISS
-
-
Biegert, A.1
Mayer, C.2
Remmert, M.3
Soding, J.4
Lupas, A.N.5
-
12
-
-
0026603668
-
Expression of ORF-69 of turnip yellow mosaic virus is necessary for viral spread in plants
-
Bozarth, C. S., J. J. Weiland, and T. W. Dreher. 1992. Expression of ORF-69 of turnip yellow mosaic virus is necessary for viral spread in plants. Virology 187:124-130.
-
(1992)
Virology
, vol.187
, pp. 124-130
-
-
Bozarth, C.S.1
Weiland, J.J.2
Dreher, T.W.3
-
13
-
-
0036017388
-
Evolutionary rate heterogeneity in proteins with long disordered regions
-
Brown, C. J., S. Takayama, A. M. Campen, P. Vise, T. W. Marshall, C. J. Oldfield, C. J. Williams, and A. K. Dunker. 2002. Evolutionary rate heterogeneity in proteins with long disordered regions. J. Mol. Evol. 55:104-110.
-
(2002)
J. Mol. Evol.
, vol.55
, pp. 104-110
-
-
Brown, C.J.1
Takayama, S.2
Campen, A.M.3
Vise, P.4
Marshall, T.W.5
Oldfield, C.J.6
Williams, C.J.7
Dunker, A.K.8
-
14
-
-
0030690133
-
Deciphering protein sequence information through hydrophobic cluster analysis (HCA): Current status and perspectives
-
Callebaut, I., G. Labesse, P. Durand, A. Poupon, L. Canard, J. Chomilier, B. Henrissat, and J. P. Mornon. 1997. Deciphering protein sequence information through hydrophobic cluster analysis (HCA): current status and perspectives. Cell Mol. Life Sci. 53:621-645.
-
(1997)
Cell Mol. Life Sci.
, vol.53
, pp. 621-645
-
-
Callebaut, I.1
Labesse, G.2
Durand, P.3
Poupon, A.4
Canard, L.5
Chomilier, J.6
Henrissat, B.7
Mornon, J.P.8
-
15
-
-
0035957094
-
Solution structure of the p53 regulatory domain of the p19Arf tumor suppressor protein
-
DiGiammarino, E. L., I. Filippov, J. D. Weber, B. Bothner, and R. W. Kriwacki. 2001. Solution structure of the p53 regulatory domain of the p19Arf tumor suppressor protein. Biochemistry 40:2379-2386.
-
(2001)
Biochemistry
, vol.40
, pp. 2379-2386
-
-
DiGiammarino, E.L.1
Filippov, I.2
Weber, J.D.3
Bothner, B.4
Kriwacki, R.W.5
-
16
-
-
0024595687
-
Expression of five proteins from the Sendai virus P/C mRNA in infected cells
-
Dillon, P. J., and K. C. Gupta. 1989. Expression of five proteins from the Sendai virus P/C mRNA in infected cells. J. Virol. 63:974-977. (Pubitemid 19057273)
-
(1989)
Journal of Virology
, vol.63
, Issue.2
, pp. 974-977
-
-
Dillon, P.J.1
Gupta, K.C.2
-
17
-
-
21644450076
-
Crystallization and preliminary X-ray analysis of a proteinase-K- resistant domain within the phosphoprotein of vesicular stomatitis virus (Indiana)
-
DOI 10.1107/S0907444904024102
-
Ding, H., T. J. Green, and M. Luo. 2004. Crystallization and preliminary X-ray analysis of a proteinase-K-resistant domain within the phosphoprotein of vesicular stomatitis virus (Indiana). Acta Crystallogr. D 60:2087-2090. (Pubitemid 41087559)
-
(2004)
Acta Crystallographica Section D: Biological Crystallography
, vol.60
, Issue.11
, pp. 2087-2090
-
-
Ding, H.1
Green, T.J.2
Luo, M.3
-
18
-
-
0025784476
-
Phylogeny of capsid proteins of rod-shaped and filamentous RNA plant viruses: Two families with distinct patterns of sequence and probably structure conservation
-
Dolja, V. V., V. P. Boyko, A. A. Agranovsky, and E. V. Koonin. 1991. Phylogeny of capsid proteins of rod-shaped and filamentous RNA plant viruses: two families with distinct patterns of sequence and probably structure conservation. Virology 184:79-86.
-
(1991)
Virology
, vol.184
, pp. 79-86
-
-
Dolja, V.V.1
Boyko, V.P.2
Agranovsky, A.A.3
Koonin, E.V.4
-
19
-
-
34247595555
-
Prediction of protein disorder at the domain level
-
Dosztanyi, Z., M. Sandor, P. Tompa, and I. Simon. 2007. Prediction of protein disorder at the domain level. Curr. Protein Pept. Sci. 8:161-171.
-
(2007)
Curr. Protein Pept. Sci.
, vol.8
, pp. 161-171
-
-
Dosztanyi, Z.1
Sandor, M.2
Tompa, P.3
Simon, I.4
-
20
-
-
40849097775
-
Rates of evolutionary change in viruses: Patterns and determinants
-
Duffy, S., L. A. Shackelton, and E. C. Holmes. 2008. Rates of evolutionary change in viruses: patterns and determinants. Nat. Rev. Genet. 9:267-276.
-
(2008)
Nat. Rev. Genet.
, vol.9
, pp. 267-276
-
-
Duffy, S.1
Shackelton, L.A.2
Holmes, E.C.3
-
21
-
-
14644435825
-
Intrinsically unstructured proteins and their functions
-
Dyson, H. J., and P. E. Wright. 2005. Intrinsically unstructured proteins and their functions. Nat. Rev. Mol. Cell Biol. 6:197-208.
-
(2005)
Nat. Rev. Mol. Cell Biol.
, vol.6
, pp. 197-208
-
-
Dyson, H.J.1
Wright, P.E.2
-
22
-
-
0038625034
-
An unusual mechanism of bacterial gene expression revealed for the RNase P protein of Thermus strains
-
Feltens, R., M. Gossringer, D. K. Willkomm, H. Urlaub, and R. K. Hartmann. 2003. An unusual mechanism of bacterial gene expression revealed for the RNase P protein of Thermus strains. Proc. Natl. Acad. Sci. USA 100:5724-5729.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 5724-5729
-
-
Feltens, R.1
Gossringer, M.2
Willkomm, D.K.3
Urlaub, H.4
Hartmann, R.K.5
-
23
-
-
33748258328
-
A practical overview of protein disorder prediction methods
-
DOI 10.1002/prot.21075
-
Ferron, F., S. Longhi, B. Canard, and D. Karlin. 2006. A practical overview of protein disorder prediction methods. Proteins 65:1-14. (Pubitemid 44320610)
-
(2006)
Proteins: Structure, Function and Genetics
, vol.65
, Issue.1
, pp. 1-14
-
-
Ferron, F.1
Longhi, S.2
Canard, B.3
Karlin, D.4
-
24
-
-
33644876020
-
Pfam: Clans, web tools and services
-
Finn, R. D., J. Mistry, B. Schuster-Bockler, S. Griffiths-Jones, V. Hollich, T. Lassmann, S. Moxon, M. Marshall, A. Khanna, R. Durbin, S. R. Eddy, E. L. Sonnhammer, and A. Bateman. 2006. Pfam: clans, web tools and services. Nucleic Acids Res. 34:D247-D251.
-
(2006)
Nucleic Acids Res.
, vol.34
-
-
Finn, R.D.1
Mistry, J.2
Schuster-Bockler, B.3
Griffiths-Jones, S.4
Hollich, V.5
Lassmann, T.6
Moxon, S.7
Marshall, M.8
Khanna, A.9
Durbin, R.10
Eddy, S.R.11
Sonnhammer, E.L.12
Bateman, A.13
-
25
-
-
38549146894
-
The Pfam protein families database
-
Finn, R. D., J. Tate, J. Mistry, P. C. Coggill, S. J. Sammut, H. R. Hotz, G. Ceric, K. Forslund, S. R. Eddy, E. L. Sonnhammer, and A. Bateman. 2008. The Pfam protein families database. Nucleic Acids Res. 36:D281-D288.
-
(2008)
Nucleic Acids Res.
, vol.36
-
-
Finn, R.D.1
Tate, J.2
Mistry, J.3
Coggill, P.C.4
Sammut, S.J.5
Hotz, H.R.6
Ceric, G.7
Forslund, K.8
Eddy, S.R.9
Sonnhammer, E.L.10
Bateman, A.11
-
26
-
-
45849098280
-
Bioinformatic analysis suggests that a conserved ORF in the waikaviruses encodes an overlapping gene
-
Firth, A. E., and J. F. Atkins. 2008. Bioinformatic analysis suggests that a conserved ORF in the waikaviruses encodes an overlapping gene. Arch. Virol. 153:1379-1383.
-
(2008)
Arch. Virol.
, vol.153
, pp. 1379-1383
-
-
Firth, A.E.1
Atkins, J.F.2
-
27
-
-
0032871834
-
Finding families for genomic ORFans
-
Fischer, D., and D. Eisenberg. 1999. Finding families for genomic ORFans. Bioinformatics 15:759-762.
-
(1999)
Bioinformatics
, vol.15
, pp. 759-762
-
-
Fischer, D.1
Eisenberg, D.2
-
28
-
-
0035138804
-
Conserved and non-conserved regions in the Sendai virus genome: Evolution of a gene possessing overlapping reading frames
-
DOI 10.1023/A:1008130318633
-
Fujii, Y., K. Kiyotani, T. Yoshida, and T. Sakaguchi. 2001. Conserved and non-conserved regions in the Sendai virus genome: evolution of a gene possessing overlapping reading frames. Virus Genes 22:47-52. (Pubitemid 32108376)
-
(2001)
Virus Genes
, vol.22
, Issue.1
, pp. 47-52
-
-
Fujii, Y.1
Kiyotani, K.2
Yoshida, T.3
Sakaguchi, T.4
-
29
-
-
0345490693
-
On dynamics of overlapping genes in bacterial genomes
-
DOI 10.1016/j.gene.2003.09.021
-
Fukuda, Y., Y. Nakayama, and M. Tomita. 2003. On dynamics of overlapping genes in bacterial genomes. Gene 323:181-187. (Pubitemid 37501098)
-
(2003)
Gene
, vol.323
, Issue.1-2
, pp. 181-187
-
-
Fukuda, Y.1
Nakayama, Y.2
Tomita, M.3
-
31
-
-
1442355007
-
Protein structure prediction for the male-specific region of the human Y chromosome
-
Ginalski, K., L. Rychlewski, D. Baker, and N. V. Grishin. 2004. Protein structure prediction for the male-specific region of the human Y chromosome. Proc. Natl. Acad. Sci. USA 101:2305-2310.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 2305-2310
-
-
Ginalski, K.1
Rychlewski, L.2
Baker, D.3
Grishin, N.V.4
-
32
-
-
0036297144
-
Sequence analysis of Potato leafroll virus isolates reveals genetic stability, major evolutionary events and differential selection pressure between overlapping reading frame products
-
Guyader, S., and D. G. Ducray. 2002. Sequence analysis of Potato leafroll virus isolates reveals genetic stability, major evolutionary events and differential selection pressure between overlapping reading frame products. J. Gen. Virol. 83:1799-1807.
-
(2002)
J. Gen. Virol.
, vol.83
, pp. 1799-1807
-
-
Guyader, S.1
Ducray, D.G.2
-
34
-
-
84974728208
-
Principles of virus structure
-
D. M. Knipe and P. M. Howley (ed.), Lippincott Williams & Wilkins, Philadelphia, PA
-
Harrison, S. C. 2007. Principles of virus structure, p. 59-98. In D. M. Knipe and P. M. Howley (ed.), Fields virology, 5th ed., vol.1. Lippincott Williams & Wilkins, Philadelphia, PA.
-
(2007)
Fields Virology, 5th Ed.
, vol.1
, pp. 59-98
-
-
Harrison, S.C.1
-
35
-
-
1242319463
-
The refined structure of Nudaurelia capensis omega Virus reveals control elements for a T = 4 capsid maturation
-
DOI 10.1016/j.virol.2003.08.045
-
Helgstrand, C., S. Munshi, J. E. Johnson, and L. Liljas. 2004. The refined structure of Nudaurelia capensis omega virus reveals control elements for a T = 4 capsid maturation. Virology 318:192-203. (Pubitemid 38234273)
-
(2004)
Virology
, vol.318
, Issue.1
, pp. 192-203
-
-
Helgstrand, C.1
Munshi, S.2
Johnson, J.E.3
Liljas, L.4
-
36
-
-
0036068571
-
IPNV VP5, a novel antiapoptosis gene of the Bcl-2 family, regulates Mcl-1 and viral protein expression
-
Hong, J. R., H. Y. Gong, and J. L. Wu. 2002. IPNV VP5, a novel antiapoptosis gene of the Bcl-2 family, regulates Mcl-1 and viral protein expression. Virology 295:217-229.
-
(2002)
Virology
, vol.295
, pp. 217-229
-
-
Hong, J.R.1
Gong, H.Y.2
Wu, J.L.3
-
37
-
-
0034877976
-
Simultaneous positive and purifying selection on overlapping reading frames of the tat and vpr genes of simian immunodeficiency virus
-
Hughes, A. L., K. Westover, J. da Silva, D. H. O'Connor, and D. I. Watkins. 2001. Simultaneous positive and purifying selection on overlapping reading frames of the tat and vpr genes of simian immunodeficiency virus. J. Virol. 75:7966-7972.
-
(2001)
J. Virol.
, vol.75
, pp. 7966-7972
-
-
Hughes, A.L.1
Westover, K.2
Da Silva, J.3
O'Connor, D.H.4
Watkins, D.I.5
-
38
-
-
0036720020
-
The Ka/Ks ratio: Diagnosing the form of sequence evolution
-
Hurst, L. D. 2002. The Ka/Ks ratio: diagnosing the form of sequence evolution. Trends Genet. 18:486.
-
(2002)
Trends Genet.
, vol.18
, pp. 486
-
-
Hurst, L.D.1
-
39
-
-
23144463912
-
FFAS03: A server for profile-profile sequence alignments
-
DOI 10.1093/nar/gki418
-
Jaroszewski, L., L. Rychlewski, Z. Li, W. Li, and A. Godzik. 2005. FFAS03: a server for profile-profile sequence alignments. Nucleic Acids Res. 33:W284-W288. (Pubitemid 44529927)
-
(2005)
Nucleic Acids Research
, vol.33
, Issue.WEB. SERV. ISS
-
-
Jaroszewski, L.1
Rychlewski, L.2
Li, Z.3
Li, W.4
Godzik, A.5
-
40
-
-
0033972445
-
Molecular evolution of the Paramyxoviridae and Rhabdoviridae multiple-protein-encoding P gene
-
Jordan, I. K., B. A. T. Sutter, and M. A. McClure. 2000. Molecular evolution of the Paramyxoviridae and Rhabdoviridae multiple-protein-encoding P gene. Mol. Biol. Evol. 17:75-86.
-
(2000)
Mol. Biol. Evol.
, vol.17
, pp. 75-86
-
-
Jordan, I.K.1
Sutter, B.A.T.2
McClure, M.A.3
-
41
-
-
0346752214
-
Structural disorder and modular organization in Paramyxovirinae N and P
-
Karlin, D., F. Ferron, B. Canard, and S. Longhi. 2003. Structural disorder and modular organization in Paramyxovirinae N and P. J. Gen. Virol. 84:3239-3252.
-
(2003)
J. Gen. Virol.
, vol.84
, pp. 3239-3252
-
-
Karlin, D.1
Ferron, F.2
Canard, B.3
Longhi, S.4
-
42
-
-
0036299393
-
The N-terminal domain of the phosphoprotein of Morbilliviruses belongs to the natively unfolded class of proteins
-
DOI 10.1006/viro.2001.1296
-
Karlin, D., S. Longhi, V. Receveur, and B. Canard. 2002. The N-terminal domain of the phosphoprotein of Morbilliviruses belongs to the natively unfolded class of proteins. Virology 296:251-262. (Pubitemid 34713265)
-
(2002)
Virology
, vol.296
, Issue.2
, pp. 251-262
-
-
Karlin, D.1
Longhi, S.2
Receveur, V.3
Canard, B.4
-
43
-
-
0026722407
-
Origins of genes: "big bang" or continuous creation?
-
Keese, P. K., and A. Gibbs. 1992. Origins of genes: "big bang" or continuous creation? Proc. Natl. Acad. Sci. USA 89:9489-9493.
-
(1992)
Proc. Natl. Acad. Sci. USA
, vol.89
, pp. 9489-9493
-
-
Keese, P.K.1
Gibbs, A.2
-
44
-
-
52649097000
-
Structure of flexible filamentous plant viruses
-
Kendall, A., M. McDonald, W. Bian, T. Bowles, S. C. Baumgarten, J. Shi, P. L. Stewart, E. Bullitt, D. Gore, T. C. Irving, W. M. Havens, S. A. Ghabrial, J. S. Wall, and G. Stubbs. 2008. Structure of flexible filamentous plant viruses. J. Virol. 82:9546-9554.
-
(2008)
J. Virol.
, vol.82
, pp. 9546-9554
-
-
Kendall, A.1
McDonald, M.2
Bian, W.3
Bowles, T.4
Baumgarten, S.C.5
Shi, J.6
Stewart, P.L.7
Bullitt, E.8
Gore, D.9
Irving, T.C.10
Havens, W.M.11
Ghabrial, S.A.12
Wall, J.S.13
Stubbs, G.14
-
45
-
-
0026655694
-
Computer-assisted assignment of functional domains in the nonstructural polyprotein of hepatitis E virus: Delineation of an additional group of positive-strand RNA plant and animal viruses
-
Koonin, E. V., A. E. Gorbalenya, M. A. Purdy, M. N. Rozanov, G. R. Reyes, and D. W. Bradley. 1992. Computer-assisted assignment of functional domains in the nonstructural polyprotein of hepatitis E virus: delineation of an additional group of positive-strand RNA plant and animal viruses. Proc. Natl. Acad. Sci. USA 89:8259-8263.
-
(1992)
Proc. Natl. Acad. Sci. USA
, vol.89
, pp. 8259-8263
-
-
Koonin, E.V.1
Gorbalenya, A.E.2
Purdy, M.A.3
Rozanov, M.N.4
Reyes, G.R.5
Bradley, D.W.6
-
46
-
-
0033926304
-
Stability and evolution of overlapping genes
-
Krakauer, D. C. 2000. Stability and evolution of overlapping genes. Evolution 54:731-739.
-
(2000)
Evolution
, vol.54
, pp. 731-739
-
-
Krakauer, D.C.1
-
47
-
-
0029971736
-
Normal replication of vesicular stomatitis virus without C proteins
-
DOI 10.1006/viro.1996.0066
-
Kretzschmar, E., R. Peluso, M. J. Schnell, M. A. Whitt, and J. K. Rose. 1996. Normal replication of vesicular stomatitis virus without C proteins. Virology 216:309-316. (Pubitemid 26083376)
-
(1996)
Virology
, vol.216
, Issue.2
, pp. 309-316
-
-
Kretzschmar, E.1
Peluso, R.2
Schnell, M.J.3
Whitt, M.A.4
Rose, J.K.5
-
48
-
-
0037466522
-
The Potato virus X TGBp3 protein associates with the ER network for virus cell-to-cell movement
-
DOI 10.1016/S0042-6822(02)00102-2
-
Krishnamurthy, K., M. Heppler, R. Mitra, E. Blancaflor, M. Payton, R. S. Nelson, and J. Verchot-Lubicz. 2003. The Potato virus X TGBp3 protein associates with the ER network for virus cell-to-cell movement. Virology 309:135-151. (Pubitemid 36506597)
-
(2003)
Virology
, vol.309
, Issue.1
, pp. 135-151
-
-
Krishnamurthy, K.1
Heppler, M.2
Mitra, R.3
Blancaflor, E.4
Payton, M.5
Nelson, R.S.6
Verchot-Lubicz, J.7
-
49
-
-
13444307044
-
Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions
-
DOI 10.1107/S0907444904026460
-
Krissinel, E., and K. Henrick. 2004. Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions. Acta Crystallogr. D 60:2256-2268. (Pubitemid 41742778)
-
(2004)
Acta Crystallographica Section D: Biological Crystallography
, vol.60
, Issue.12 I
, pp. 2256-2268
-
-
Krissinel, E.1
Henrick, K.2
-
50
-
-
33947365568
-
Curation of viral genomes: Challenges, applications and the way forward
-
DOI 10.1186/1471-2105-7-S5-S12
-
Kulkarni-Kale, U., S. G. Bhosle, G. S. Manjari, M. Joshi, S. Bansode, and A. S. Kolaskar. 2006. Curation of viral genomes: challenges, applications and the way forward. BMC Bioinformatics 7(Suppl. 5):S12. (Pubitemid 46443019)
-
(2006)
BMC Bioinformatics
, vol.7
, Issue.SUPPL. 5
-
-
Kulkarni-Kale, U.1
Bhosle, S.G.2
Manjari, G.S.3
Joshi, M.4
Bansode, S.5
Kolaskar, A.S.6
-
51
-
-
0035422697
-
In vitro analysis of an RNA binding site within the N-terminal 30 amino acids of the southern cowpea mosaic virus coat protein
-
Lee, S. K., and D. L. Hacker. 2001. In vitro analysis of an RNA binding site within the N-terminal 30 amino acids of the southern cowpea mosaic virus coat protein. Virology 286:317-327.
-
(2001)
Virology
, vol.286
, pp. 317-327
-
-
Lee, S.K.1
Hacker, D.L.2
-
52
-
-
33644877451
-
SMART 5: Domains in the context of genomes and networks
-
Letunic, I., R. R. Copley, B. Pils, S. Pinkert, J. Schultz, and P. Bork. 2006. SMART 5: domains in the context of genomes and networks. Nucleic Acids Res. 34:D257-D260.
-
(2006)
Nucleic Acids Res.
, vol.34
-
-
Letunic, I.1
Copley, R.R.2
Pils, B.3
Pinkert, S.4
Schultz, J.5
Bork, P.6
-
53
-
-
33750361188
-
Virus counterdefense: Diverse strategies for evading the RNA-silencing immunity
-
Li, F., and S. W. Ding. 2006. Virus counterdefense: diverse strategies for evading the RNA-silencing immunity. Annu. Rev. Microbiol. 60:503-531.
-
(2006)
Annu. Rev. Microbiol.
, vol.60
, pp. 503-531
-
-
Li, F.1
Ding, S.W.2
-
54
-
-
0036888916
-
The p23 protein of hibiscus chlorotic ringspot virus is indispensable for host-specific replication
-
Liang, X. Z., A. P. Lucy, S. W. Ding, and S. M. Wong. 2002. The p23 protein of hibiscus chlorotic ringspot virus is indispensable for host-specific replication. J. Virol. 76:12312-12319.
-
(2002)
J. Virol.
, vol.76
, pp. 12312-12319
-
-
Liang, X.Z.1
Lucy, A.P.2
Ding, S.W.3
Wong, S.M.4
-
55
-
-
0242354129
-
The origin of new genes: Glimpses from the young and old
-
Long, M., E. Betran, K. Thornton, and W. Wang. 2003. The origin of new genes: glimpses from the young and old. Nat. Rev. Genet. 4:865-875.
-
(2003)
Nat. Rev. Genet.
, vol.4
, pp. 865-875
-
-
Long, M.1
Betran, E.2
Thornton, K.3
Wang, W.4
-
56
-
-
0034979131
-
Virus-specific mRNA capping enzyme encoded by hepatitis e virus
-
DOI 10.1128/JVI.75.14.6249-6255.2001
-
Magden, J., N. Takeda, T. Li, P. Auvinen, T. Ahola, T. Miyamura, A. Merits, and L. Kaariainen. 2001. Virus-specific mRNA capping enzyme encoded by hepatitis E virus. J. Virol. 75:6249-6255. (Pubitemid 32578142)
-
(2001)
Journal of Virology
, vol.75
, Issue.14
, pp. 6249-6255
-
-
Magden, J.1
Takeda, N.2
Li, T.3
Auvinen, P.4
Ahola, T.5
Miyamura, T.6
Merits, A.7
Kaariainen, L.8
-
57
-
-
0034917751
-
Phylogenetic analysis of ribonuclease H domains suggests a late, chimeric origin of LTR retrotransposable elements and retroviruses
-
Malik, H. S., and T. H. Eickbush. 2001. Phylogenetic analysis of ribonuclease H domains suggests a late, chimeric origin of LTR retrotransposable elements and retroviruses. Genome Res. 11:1187-1197.
-
(2001)
Genome Res.
, vol.11
, pp. 1187-1197
-
-
Malik, H.S.1
Eickbush, T.H.2
-
58
-
-
33645977813
-
Report from the 36th and the 37th meetings of the Executive Committee of the International Committee on Taxonomy of Viruses
-
Mayo, M. A., and A. L. Haenni. 2006. Report from the 36th and the 37th meetings of the Executive Committee of the International Committee on Taxonomy of Viruses. Arch. Virol. 151:1031-1037.
-
(2006)
Arch. Virol.
, vol.151
, pp. 1031-1037
-
-
Mayo, M.A.1
Haenni, A.L.2
-
59
-
-
33744720139
-
Tax & rex: Overlapping genes of the Deltaretrovirus group
-
McGirr, K. M., and G. C. Buehuring. 2006. Tax & rex: overlapping genes of the Deltaretrovirus group. Virus Genes 32:229-239.
-
(2006)
Virus Genes
, vol.32
, pp. 229-239
-
-
McGirr, K.M.1
Buehuring, G.C.2
-
60
-
-
33745899357
-
The Crystal Structure of ORF-9b, a Lipid Binding Protein from the SARS Coronavirus
-
DOI 10.1016/j.str.2006.05.012, PII S0969212606002516
-
Meier, C., A. R. Aricescu, R. Assenberg, R. T. Aplin, R. J. Gilbert, J. M. Grimes, and D. I. Stuart. 2006. The crystal structure of ORF-9b, a lipid binding protein from the SARS coronavirus. Structure 14:1157-1165. (Pubitemid 44041056)
-
(2006)
Structure
, vol.14
, Issue.7
, pp. 1157-1165
-
-
Meier, C.1
Aricescu, A.R.2
Assenberg, R.3
Aplin, R.T.4
Gilbert, R.J.C.5
Grimes, J.M.6
Stuart, D.I.7
-
61
-
-
0033971647
-
The '30K' superfamily of viral movement proteins
-
Melcher, U. 2000. The '30K' superfamily of viral movement proteins. J. Gen. Virol. 81:257-266.
-
(2000)
J. Gen. Virol.
, vol.81
, pp. 257-266
-
-
Melcher, U.1
-
62
-
-
0345099561
-
Improving gene annotation of complete viral genomes
-
DOI 10.1093/nar/gkg878
-
Mills, R., M. Rozanov, A. Lomsadze, T. Tatusova, and M. Borodovsky. 2003. Improving gene annotation of complete viral genomes. Nucleic Acids Res. 31:7041-7055. (Pubitemid 37508811)
-
(2003)
Nucleic Acids Research
, vol.31
, Issue.23
, pp. 7041-7055
-
-
Mills, R.1
Rozanov, M.2
Lomsadze, A.3
Tatusova, T.4
Borodovsky, M.5
-
63
-
-
0031030479
-
Constrained evolution with respect to gene overlap of hepatitis B virus
-
Mizokami, M., E. Orito, K. Ohba, K. Ikeo, J. Y. Lau, and T. Gojobori. 1997. Constrained evolution with respect to gene overlap of hepatitis B virus. J. Mol. Evol. 44(Suppl. 1):S83-S90.
-
(1997)
J. Mol. Evol.
, vol.44
, Issue.SUPPL. 1
-
-
Mizokami, M.1
Orito, E.2
Ohba, K.3
Ikeo, K.4
Lau, J.Y.5
Gojobori, T.6
-
64
-
-
18144431290
-
Overlapping reading frames in closely related human papillomaviruses result in modular rates of selection within E2
-
Narechania, A., M. Terai, and R. D. Burk. 2005. Overlapping reading frames in closely related human papillomaviruses result in modular rates of selection within E2. J. Gen. Virol. 86:1307-1313.
-
(2005)
J. Gen. Virol.
, vol.86
, pp. 1307-1313
-
-
Narechania, A.1
Terai, M.2
Burk, R.D.3
-
65
-
-
0242267500
-
Predicting Intrinsic Disorder from Amino Acid Sequence
-
DOI 10.1002/prot.10532
-
Obradovic, Z., K. Peng, S. Vucetic, P. Radivojac, C. J. Brown, and A. K. Dunker. 2003. Predicting intrinsic disorder from amino acid sequence. Proteins 53(Suppl. 6):566-572. (Pubitemid 37352217)
-
(2003)
Proteins: Structure, Function and Genetics
, vol.53
, Issue.SUPPL. 6
, pp. 566-572
-
-
Obradovic, Z.1
Peng, K.2
Vucetic, S.3
Radivojac, P.4
Brown, C.J.5
Dunker, A.K.6
-
66
-
-
0033921799
-
Detection of signature sequences in overlapping genes and prediction of a novel overlapping gene in hepatitis G virus
-
Pavesi, A. 2000. Detection of signature sequences in overlapping genes and prediction of a novel overlapping gene in hepatitis G virus. J. Mol. Evol. 50:284-295.
-
(2000)
J. Mol. Evol.
, vol.50
, pp. 284-295
-
-
Pavesi, A.1
-
67
-
-
33645539406
-
Origin and evolution of overlapping genes in the family Microviridae
-
Pavesi, A. 2006. Origin and evolution of overlapping genes in the family Microviridae. J. Gen. Virol. 87:1013-1017.
-
(2006)
J. Gen. Virol.
, vol.87
, pp. 1013-1017
-
-
Pavesi, A.1
-
68
-
-
0030976687
-
On the informational content of overlapping genes in prokaryotic and eukaryotic viruses
-
Pavesi, A., B. De Iaco, M. I. Granero, and A. Porati. 1997. On the informational content of overlapping genes in prokaryotic and eukaryotic viruses. J. Mol. Evol. 44:625-631.
-
(1997)
J. Mol. Evol.
, vol.44
, pp. 625-631
-
-
Pavesi, A.1
De Iaco, B.2
Granero, M.I.3
Porati, A.4
-
69
-
-
33745289067
-
Length-dependent prediction of protein in intrinsic disorder
-
DOI 10.1186/1471-2105-7-208
-
Peng, K., P. Radivojac, S. Vucetic, A. K. Dunker, and Z. Obradovic. 2006. Length-dependent prediction of protein intrinsic disorder. BMC Bioinformatics 7:208. (Pubitemid 43918500)
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 208
-
-
Peng, K.1
Radivojac, P.2
Vucetic, S.3
Dunker, A.K.4
Obradovic, Z.5
-
70
-
-
42549161129
-
Bioinformatics prediction of overlapping frameshifted translation products in mammalian transcripts
-
DOI 10.1186/1471-2164-9-122
-
Ribrioux, S., A. Brungger, B. Baumgarten, K. Seuwen, and M. R. John. 2008. Bioinformatics prediction of overlapping frameshifted translation products in mammalian transcripts. BMC Genomics 9:122. (Pubitemid 351584212)
-
(2008)
BMC Genomics
, vol.9
, pp. 122
-
-
Ribrioux, S.1
Brungger, A.2
Baumgarten, B.3
Seuwen, K.4
John, M.R.5
-
71
-
-
0036575455
-
Purifying and directional selection in overlapping prokaryotic genes
-
Rogozin, I. B., A. N. Spiridonov, A. V. Sorokin, Y. I. Wolf, I. K. Jordan, R. L. Tatusov, and E. V. Koonin. 2002. Purifying and directional selection in overlapping prokaryotic genes. Trends Genet. 18:228-232.
-
(2002)
Trends Genet.
, vol.18
, pp. 228-232
-
-
Rogozin, I.B.1
Spiridonov, A.N.2
Sorokin, A.V.3
Wolf, Y.I.4
Jordan, I.K.5
Tatusov, R.L.6
Koonin, E.V.7
-
72
-
-
0026793857
-
Conservation of the putative methyltransferase domain: A hallmark of the 'Sindbis-like' supergroup of positive-strand RNA viruses
-
Rozanov, M. N., E. V. Koonin, and A. E. Gorbalenya. 1992. Conservation of the putative methyltransferase domain: a hallmark of the 'Sindbis-like' supergroup of positive-strand RNA viruses. J. Gen. Virol. 73:2129-2134.
-
(1992)
J. Gen. Virol.
, vol.73
, pp. 2129-2134
-
-
Rozanov, M.N.1
Koonin, E.V.2
Gorbalenya, A.E.3
-
73
-
-
17644388427
-
Expression and spectroscopic analysis of a mutant hepatitis B virus onco-protein HBx without cysteine residues
-
DOI 10.1016/j.jviromet.2005.01.022
-
Rui, E., P. R. Moura, A. Goncalves Kde, and J. Kobarg. 2005. Expression and spectroscopic analysis of a mutant hepatitis B virus onco-protein HBx without cysteine residues. J. Virol. Methods 126:65-74. (Pubitemid 40558744)
-
(2005)
Journal of Virological Methods
, vol.126
, Issue.1-2
, pp. 65-74
-
-
Rui, E.1
De Moura, P.R.2
Goncalves, K.D.A.3
Kobarg, J.4
-
75
-
-
0018524481
-
Degeneracy of the information contained in amino acid sequences: Evidence from overlaid genes
-
Sander, C., and G. E. Schulz. 1979. Degeneracy of the information contained in amino acid sequences: evidence from overlaid genes. J. Mol. Evol. 13:245-252.
-
(1979)
J. Mol. Evol.
, vol.13
, pp. 245-252
-
-
Sander, C.1
Schulz, G.E.2
-
76
-
-
0017367852
-
Nucleotide sequence of bacteriophage phiX174 DNA
-
DOI 10.1038/265687a0
-
Sanger, F., G. M. Air, B. G. Barrell, N. L. Brown, A. R. Coulson, C. A. Fiddes, C. A. Hutchison, P. M. Slocombe, and M. Smith. 1977. Nucleotide sequence of bacteriophage phi X174 DNA. Nature 265:687-695. (Pubitemid 8039446)
-
(1977)
Nature
, vol.265
, Issue.5596
, pp. 687-695
-
-
Sanger, F.1
Air, G.M.2
Barrell, B.G.3
-
77
-
-
0033278884
-
Genetic variability of natural populations of cotton leaf curl geminivirus, a single-stranded DNA virus
-
Sanz, A. I., A. Fraile, J. M. Gallego, J. M. Malpica, and F. Garcia-Arenal. 1999. Genetic variability of natural populations of cotton leaf curl geminivirus, a single-stranded DNA virus. J. Mol. Evol. 49:672-681.
-
(1999)
J. Mol. Evol.
, vol.49
, pp. 672-681
-
-
Sanz, A.I.1
Fraile, A.2
Gallego, J.M.3
Malpica, J.M.4
Garcia-Arenal, F.5
-
78
-
-
34548750953
-
Natively unstructured regions in proteins identified from contact predictions
-
DOI 10.1093/bioinformatics/btm349
-
Schlessinger, A., M. Punta, and B. Rost. 2007. Natively unstructured regions in proteins identified from contact predictions. Bioinformatics 23: 2376-2384. (Pubitemid 47423834)
-
(2007)
Bioinformatics
, vol.23
, Issue.18
, pp. 2376-2384
-
-
Schlessinger, A.1
Punta, M.2
Rost, B.3
-
79
-
-
0028175682
-
RNA splicing in Borna disease virus, a nonsegmented, negative-strand RNA virus
-
Schneider, P. A., A. Schneemann, and W. I. Lipkin. 1994. RNA splicing in Borna disease virus, a nonsegmented, negative-strand RNA virus. J. Virol. 68:5007-5012. (Pubitemid 2114592)
-
(1994)
Journal of Virology
, vol.68
, Issue.8
, pp. 5007-5012
-
-
Schneider, P.A.1
Schneemann, A.2
Lipkin, W.I.3
-
80
-
-
33646838039
-
The Tombusvirus-encoded P19: From irrelevance to elegance
-
Scholthof, H. B. 2006. The Tombusvirus-encoded P19: from irrelevance to elegance. Nat. Rev. Microbiol. 4:405-411.
-
(2006)
Nat. Rev. Microbiol.
, vol.4
, pp. 405-411
-
-
Scholthof, H.B.1
-
81
-
-
0035967880
-
FUGUE: Sequence-structure homology recognition using environment-specific substitution tables and structure-dependent gap penalties
-
Shi, J., T. L. Blundell, and K. Mizuguchi. 2001. FUGUE: sequence-structure homology recognition using environment-specific substitution tables and structure-dependent gap penalties. J. Mol. Biol. 310:243-257.
-
(2001)
J. Mol. Biol.
, vol.310
, pp. 243-257
-
-
Shi, J.1
Blundell, T.L.2
Mizuguchi, K.3
-
82
-
-
33846099868
-
DisProt: The Database of Disordered Proteins
-
Sickmeier, M., J. A. Hamilton, T. LeGall, V. Vacic, M. S. Cortese, A. Tantos, B. Szabo, P. Tompa, J. Chen, V. N. Uversky, Z. Obradovic, and A. K. Dunker. 2007. DisProt: the Database of Disordered Proteins. Nucleic Acids Res. 35:D786-E793.
-
(2007)
Nucleic Acids Res.
, vol.35
-
-
Sickmeier, M.1
Hamilton, J.A.2
LeGall, T.3
Vacic, V.4
Cortese, M.S.5
Tantos, A.6
Szabo, B.7
Tompa, P.8
Chen, J.9
Uversky, V.N.10
Obradovic, Z.11
Dunker, A.K.12
-
83
-
-
0003543882
-
-
Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
-
Skalka, A. M., and S. P. Goff. 1993. Reverse transcriptase. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
-
(1993)
Reverse Transcriptase
-
-
Skalka, A.M.1
Goff, S.P.2
-
84
-
-
0019496312
-
Overlapping genes and information theory
-
Smith, T. F., and M. S. Waterman. 1981. Overlapping genes and information theory. J. Theor. Biol. 91:379-380.
-
(1981)
J. Theor. Biol.
, vol.91
, pp. 379-380
-
-
Smith, T.F.1
Waterman, M.S.2
-
85
-
-
0018950969
-
Protein constraints induced by multiframe encoding
-
Smith, T. F., and M. S. Waterman. 1980. Protein constraints induced by multiframe encoding. Math. Biosci. 49:17-26.
-
(1980)
Math. Biosci.
, vol.49
, pp. 17-26
-
-
Smith, T.F.1
Waterman, M.S.2
-
86
-
-
23144452044
-
The HHpred interactive server for protein homology detection and structure prediction
-
DOI 10.1093/nar/gki408
-
Soding, J., A. Biegert, and A. N. Lupas. 2005. The HHpred interactive server for protein homology detection and structure prediction. Nucleic Acids Res. 33:W244-W248. (Pubitemid 44529917)
-
(2005)
Nucleic Acids Research
, vol.33
, Issue.WEB. SERV. ISS
-
-
Soding, J.1
Biegert, A.2
Lupas, A.N.3
-
87
-
-
33749079846
-
Design of miniproteins by the transfer of active sites onto small-size scaffolds
-
Stricher, F., L. Martin, and C. Vita. 2006. Design of miniproteins by the transfer of active sites onto small-size scaffolds. Methods Mol. Biol. 340:113-149.
-
(2006)
Methods Mol. Biol.
, vol.340
, pp. 113-149
-
-
Stricher, F.1
Martin, L.2
Vita, C.3
-
88
-
-
34547574473
-
IPDA: Integrated protein disorder analyzer
-
Su, C. T., C. Y. Chen, and C. M. Hsu. 2007. iPDA: integrated protein disorder analyzer. Nucleic Acids Res. 35:W465-W472.
-
(2007)
Nucleic Acids Res.
, vol.35
-
-
Su, C.T.1
Chen, C.Y.2
Hsu, C.M.3
-
89
-
-
0029819348
-
Polycistronic (tri- Or bicistronic) phytoreoviral segments translatable in both plant and insect cells
-
Suzuki, N., M. Sugawara, D. L. Nuss, and Y. Matsuura. 1996. Polycistronic (tri- or bicistronic) phytoreoviral segments translatable in both plant and insect cells. J. Virol. 70:8155-8159. (Pubitemid 26339130)
-
(1996)
Journal of Virology
, vol.70
, Issue.11
, pp. 8155-8159
-
-
Suzuki, N.1
Sugawara, M.2
Nuss, D.L.3
Matsuura, Y.4
-
90
-
-
50349086362
-
The twilight zone between protein order and disorder
-
Szilagyi, A., D. Gyorffy, and P. Zavodszky. 2008. The twilight zone between protein order and disorder. Biophys. J. 95:1612-1626.
-
(2008)
Biophys. J.
, vol.95
, pp. 1612-1626
-
-
Szilagyi, A.1
Gyorffy, D.2
Zavodszky, P.3
-
91
-
-
0037369103
-
An umbraviral protein, involved in long-distance RNA movement, binds viral RNA and forms unique, protective ribonucleoprotein complexes
-
DOI 10.1128/JVI.77.5.3031-3040.2003
-
Taliansky, M., I. M. Roberts, N. Kalinina, E. V. Ryabov, S. K. Raj, D. J. Robinson, and K. J. Oparka. 2003. An umbraviral protein, involved in long-distance RNA movement, binds viral RNA and forms unique, protective ribonucleoprotein complexes. J. Virol. 77:3031-3040. (Pubitemid 36228088)
-
(2003)
Journal of Virology
, vol.77
, Issue.5
, pp. 3031-3040
-
-
Taliansky, M.1
Roberts, I.M.2
Kalinina, N.3
Ryabov, E.V.4
Raj, S.K.5
Robinson, D.J.6
Oparka, K.J.7
-
92
-
-
0041666589
-
Molecular biology of umbraviruses: Phantom warriors
-
Taliansky, M. E., and D. J. Robinson. 2003. Molecular biology of umbraviruses: phantom warriors. J. Gen. Virol. 84:1951-1960.
-
(2003)
J. Gen. Virol.
, vol.84
, pp. 1951-1960
-
-
Taliansky, M.E.1
Robinson, D.J.2
-
93
-
-
0742269383
-
Base Usage and Dinucleotide Frequency of Infectious Bursal Disease Virus
-
DOI 10.1023/B:VIRU.0000012262.89898.c7
-
Tan, D. Y., M. Hair Bejo, I. Aini, A. R. Omar, and Y. M. Goh. 2004. Base usage and dinucleotide frequency of infectious bursal disease virus. Virus Genes 28:41-53. (Pubitemid 38161268)
-
(2004)
Virus Genes
, vol.28
, Issue.1
, pp. 41-53
-
-
Yew, T.D.1
Bejo, M.H.2
Ideris, A.3
Omar, A.R.4
Meng, G.Y.5
-
94
-
-
10944230777
-
Duplication and divergence: The evolution of new genes and old ideas
-
Taylor, J. S., and J. Raes. 2004. Duplication and divergence: the evolution of new genes and old ideas. Annu. Rev. Genet. 38:615-643.
-
(2004)
Annu. Rev. Genet.
, vol.38
, pp. 615-643
-
-
Taylor, J.S.1
Raes, J.2
-
95
-
-
60149097110
-
Origin of primate orphan genes: A comparative genomics approach
-
Toll-Riera, M., N. Bosch, N. Bellora, R. Castelo, L. Armengol, X. Estivill, and M. M. Alba. 2009. Origin of primate orphan genes: a comparative genomics approach. Mol. Biol. Evol. 26:603-612.
-
(2009)
Mol. Biol. Evol.
, vol.26
, pp. 603-612
-
-
Toll-Riera, M.1
Bosch, N.2
Bellora, N.3
Castelo, R.4
Armengol, L.5
Estivill, X.6
Alba, M.M.7
-
96
-
-
37749053887
-
Fuzzy complexes: Polymorphism and structural disorder in protein-protein interactions
-
Tompa, P., and M. Fuxreiter. 2008. Fuzzy complexes: polymorphism and structural disorder in protein-protein interactions. Trends Biochem. Sci. 33:2-8.
-
(2008)
Trends Biochem. Sci.
, vol.33
, pp. 2-8
-
-
Tompa, P.1
Fuxreiter, M.2
-
97
-
-
0030631855
-
Proposed re-classification of furoviruses
-
Torrance, L., and M. A. Mayo. 1997. Proposed re-classification of furoviruses. Arch. Virol. 142:435-439.
-
(1997)
Arch. Virol.
, vol.142
, pp. 435-439
-
-
Torrance, L.1
Mayo, M.A.2
-
98
-
-
0036701918
-
The virological and clinical significance of mutations in the overlapping envelope and polymerase genes of hepatitis B virus
-
Torresi, J. 2002. The virological and clinical significance of mutations in the overlapping envelope and polymerase genes of hepatitis B virus. J. Clin. Virol. 25:97-106.
-
(2002)
J. Clin. Virol.
, vol.25
, pp. 97-106
-
-
Torresi, J.1
-
99
-
-
0034120599
-
Screening predicted coding regions in poxvirus genomes
-
DOI 10.1023/A:1008126816295
-
Upton, C. 2000. Screening predicted coding regions in poxvirus genomes. Virus Genes 20:159-164. (Pubitemid 30348883)
-
(2000)
Virus Genes
, vol.20
, Issue.2
, pp. 159-164
-
-
Upton, C.1
-
100
-
-
0036128797
-
Natively unfolded proteins: A point where biology waits for physics
-
Uversky, V. N. 2002. Natively unfolded proteins: a point where biology waits for physics. Protein Sci. 11:739-756.
-
(2002)
Protein Sci.
, vol.11
, pp. 739-756
-
-
Uversky, V.N.1
-
101
-
-
41449104565
-
Prediction of intrinsic disorder and its use in functional proteomics
-
Uversky, V. N., P. Radivojac, L. M. Iakoucheva, Z. Obradovic, and A. K. Dunker. 2007. Prediction of intrinsic disorder and its use in functional proteomics. Methods Mol. Biol. 408:69-92.
-
(2007)
Methods Mol. Biol.
, vol.408
, pp. 69-92
-
-
Uversky, V.N.1
Radivojac, P.2
Iakoucheva, L.M.3
Obradovic, Z.4
Dunker, A.K.5
-
102
-
-
34447539760
-
Composition Profiler: A tool for discovery and visualization of amino acid composition differences
-
DOI 10.1186/1471-2105-8-211
-
Vacic, V., V. N. Uversky, A. K. Dunker, and S. Lonardi. 2007. Composition Profiler: a tool for discovery and visualization of amino acid composition differences. BMC Bioinformatics 8:211. (Pubitemid 47064573)
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 211
-
-
Vacic, V.1
Uversky, V.N.2
Dunker, A.K.3
Lonardi, S.4
-
103
-
-
0036015398
-
Composition of alphavirus-like replication complexes: Involvement of virus and host encoded proteins
-
van der Heijden, M. W., and J. F. Bol. 2002. Composition of alphavirus-like replication complexes: involvement of virus and host encoded proteins. Arch. Virol. 147:875-898.
-
(2002)
Arch. Virol.
, vol.147
, pp. 875-898
-
-
Van Der Heijden, M.W.1
Bol, J.F.2
-
104
-
-
0036839078
-
Non-AUG-initiated internal translation of the L* protein of Theiler's virus and importance of this protein for viral persistence
-
van Eyll, O., and T. Michiels. 2002. Non-AUG-initiated internal translation of the L* protein of Theiler's virus and importance of this protein for viral persistence. J. Virol. 76:10665-10673.
-
(2002)
J. Virol.
, vol.76
, pp. 10665-10673
-
-
Van Eyll, O.1
Michiels, T.2
-
105
-
-
0347985826
-
Size Selective Recognition of siRNA by an RNA Silencing Suppressor
-
DOI 10.1016/S0092-8674(03)00984-X
-
Vargason, J. M., G. Szittya, J. Burgyan, and T. M. Hall. 2003. Size selective recognition of siRNA by an RNA silencing suppressor. Cell 115:799-811. (Pubitemid 38058493)
-
(2003)
Cell
, vol.115
, Issue.7
, pp. 799-811
-
-
Vargason, J.M.1
Szittya, G.2
Burgyan, J.3
Tanaka Hall, T.M.4
-
106
-
-
0031931401
-
A novel P/V/C gene in a new member of the Paramyxoviridae family, which causes lethal infection in humans, horses, and other animals
-
Wang, L. F., W. P. Michalski, M. Yu, L. I. Pritchard, G. Crameri, B. Shiell, and B. T. Eaton. 1998. A novel P/V/C gene in a new member of the Paramyxoviridae family, which causes lethal infection in humans, horses, and other animals. J. Virol. 72:1482-1490.
-
(1998)
J. Virol.
, vol.72
, pp. 1482-1490
-
-
Wang, L.F.1
Michalski, W.P.2
Yu, M.3
Pritchard, L.I.4
Crameri, G.5
Shiell, B.6
Eaton, B.T.7
-
107
-
-
2342536436
-
Searching for folded proteins in vitro and in silico
-
Watters, A. L., and D. Baker. 2004. Searching for folded proteins in vitro and in silico. Eur. J. Biochem. 271:1615-1622.
-
(2004)
Eur. J. Biochem.
, vol.271
, pp. 1615-1622
-
-
Watters, A.L.1
Baker, D.2
-
108
-
-
0035064805
-
Expression of VP5 of infectious pancreatic necrosis virus strain VR299 is initiated at the second in-frame start codon
-
Weber, S., D. Fichtner, T. C. Mettenleiter, and E. Mundt. 2001. Expression of VP5 of infectious pancreatic necrosis virus strain VR299 is initiated at the second in-frame start codon. J. Gen. Virol. 82:805-812.
-
(2001)
J. Gen. Virol.
, vol.82
, pp. 805-812
-
-
Weber, S.1
Fichtner, D.2
Mettenleiter, T.C.3
Mundt, E.4
-
109
-
-
0030830861
-
Detection of a novel Borna disease virus-encoded 10 kDa protein in infected cells and tissues
-
Wehner, T., A. Ruppert, C. Herden, K. Frese, H. Becht, and J. A. Richt. 1997. Detection of a novel Borna disease virus-encoded 10 kDa protein in infected cells and tissues. J. Gen. Virol. 78:2459-2466.
-
(1997)
J. Gen. Virol.
, vol.78
, pp. 2459-2466
-
-
Wehner, T.1
Ruppert, A.2
Herden, C.3
Frese, K.4
Becht, H.5
Richt, J.A.6
-
110
-
-
22144491675
-
Orphans as taxonomically restricted and ecologically important genes
-
Wilson, G. A., N. Bertrand, Y. Patel, J. B. Hughes, E. J. Feil, and D. Field. 2005. Orphans as taxonomically restricted and ecologically important genes. Microbiology 151:2499-2501.
-
(2005)
Microbiology
, vol.151
, pp. 2499-2501
-
-
Wilson, G.A.1
Bertrand, N.2
Patel, Y.3
Hughes, J.B.4
Feil, E.J.5
Field, D.6
-
111
-
-
33847768609
-
Functional anthology of intrinsic disorder. 1. Biological processes and functions of proteins with long disordered regions
-
Xie, H., S. Vucetic, L. M. Iakoucheva, C. J. Oldfield, A. K. Dunker, V. N. Uversky, and Z. Obradovic. 2007. Functional anthology of intrinsic disorder. 1. Biological processes and functions of proteins with long disordered regions. J. Proteome Res. 6:1882-1898.
-
(2007)
J. Proteome Res.
, vol.6
, pp. 1882-1898
-
-
Xie, H.1
Vucetic, S.2
Iakoucheva, L.M.3
Oldfield, C.J.4
Dunker, A.K.5
Uversky, V.N.6
Obradovic, Z.7
-
112
-
-
0032498110
-
Characterization of soluble artificial proteins with random sequences
-
DOI 10.1016/S0014-5793(97)01552-4, PII S0014579397015524
-
Yamauchi, A., T. Yomo, F. Tanaka, I. D. Prijambada, S. Ohhashi, K. Yamamoto, Y. Shima, K. Ogasahara, K. Yutani, M. Kataoka, and I. Urabe. 1998. Characterization of soluble artificial proteins with random sequences. FEBS Lett. 421:147-151. (Pubitemid 28288080)
-
(1998)
FEBS Letters
, vol.421
, Issue.2
, pp. 147-151
-
-
Yamauchi, A.1
Yomo, T.2
Tanaka, F.3
Prijambada, I.D.4
Ohhashi, S.5
Yamamoto, K.6
Shima, Y.7
Ogasahara, K.8
Yutani, K.9
Kataoka, M.10
Urabe, I.11
-
113
-
-
20744437001
-
RONN: The bio-basis function neural network technique applied to the detection of natively disordered regions in proteins
-
Yang, Z. R., R. Thomson, P. McNeil, and R. M. Esnouf. 2005. RONN: the bio-basis function neural network technique applied to the detection of natively disordered regions in proteins. Bioinformatics 21:3369-3376.
-
(2005)
Bioinformatics
, vol.21
, pp. 3369-3376
-
-
Yang, Z.R.1
Thomson, R.2
McNeil, P.3
Esnouf, R.M.4
-
114
-
-
33747385851
-
Is bacteriophage φ174 DNA a message from an extraterrestrial intelligence?
-
Yokoo, H., and T. Oshima. 1979. Is bacteriophage φ174 DNA a message from an extraterrestrial intelligence? Icarus 38:148-153.
-
(1979)
Icarus
, vol.38
, pp. 148-153
-
-
Yokoo, H.1
Oshima, T.2
-
115
-
-
33947235074
-
The Sorcerer II global ocean sampling expedition: Expanding the universe of protein families
-
DOI 10.1371/journal.pbio.0050016
-
Yooseph, S., G. Sutton, D. B. Rusch, A. L. Halpern, S. J. Williamson, K. Remington, J. A. Eisen, K. B. Heidelberg, G. Manning, W. Li, L. Jaroszewski, P. Cieplak, C. S. Miller, H. Li, S. T. Mashiyama, M. P. Joachimiak, C. van Belle, J. M. Chandonia, D. A. Soergel, Y. Zhai, K. Natarajan, S. Lee, B. J. Raphael, V. Bafna, R. Friedman, S. E. Brenner, A. Godzik, D. Eisenberg, J. E. Dixon, S. S. Taylor, R. L. Strausberg, M. Frazier, and J. C. Venter. 2007. The Sorcerer II Global Ocean Sampling expedition: expanding the universe of protein families. PLoS Biol. 5:e16. (Pubitemid 46422966)
-
(2007)
PLoS Biology
, vol.5
, Issue.3
, pp. 432-466
-
-
Yooseph, S.1
Sutton, G.2
Rusch, D.B.3
Halpern, A.L.4
Williamson, S.J.5
Remington, K.6
Eisen, J.A.7
Heidelberg, K.B.8
Manning, G.9
Li, W.10
Jaroszewski, L.11
Cieplak, P.12
Miller, C.S.13
Li, H.14
Mashiyama, S.T.15
Joachimiak, M.P.16
Van Belle, C.17
Chandonia, J.-M.18
Soergel, D.A.19
Zhai, Y.20
Natarajan, K.21
Lee, S.22
Raphael, B.J.23
Bafna, V.24
Friedman, R.25
Brenner, S.E.26
Godzik, A.27
Eisenberg, D.28
Dixon, J.E.29
Taylor, S.S.30
Strausberg, R.L.31
Frazier, M.32
Venter, J.C.33
more..
-
116
-
-
43949093427
-
Understanding protein evolution: From protein physics to Darwinian selection
-
Zeldovich, K. B., and E. I. Shakhnovich. 2008. Understanding protein evolution: from protein physics to Darwinian selection. Annu. Rev. Phys Chem. 59:105-127.
-
(2008)
Annu. Rev. Phys Chem.
, vol.59
, pp. 105-127
-
-
Zeldovich, K.B.1
Shakhnovich, E.I.2
-
117
-
-
34548418045
-
Between order and disorder in protein structures: Analysis of "dual personality" fragments in proteins
-
Zhang, Y., B. Stec, and A. Godzik. 2007. Between order and disorder in protein structures: analysis of "dual personality" fragments in proteins. Structure 15:1141-1147.
-
(2007)
Structure
, vol.15
, pp. 1141-1147
-
-
Zhang, Y.1
Stec, B.2
Godzik, A.3
-
118
-
-
50649097020
-
On the origin of new genes in Drosophila
-
Zhou, Q., G. Zhang, Y. Zhang, S. Xu, R. Zhao, Z. Zhan, X. Li, Y. Ding, S. Yang, and W. Wang. 2008. On the origin of new genes in Drosophila. Genome Res. 18:1446-1455.
-
(2008)
Genome Res.
, vol.18
, pp. 1446-1455
-
-
Zhou, Q.1
Zhang, G.2
Zhang, Y.3
Xu, S.4
Zhao, R.5
Zhan, Z.6
Li, X.7
Ding, Y.8
Yang, S.9
Wang, W.10
-
119
-
-
33747458937
-
Hibiscus chlorotic ringspot virus p27 and its isoforms affect symptom expression and potentiate virus movement in kenaf (Hibiscus cannabinus L.)
-
DOI 10.1094/MPMI-19-0948
-
Zhou, T., Z. F. Fan, H. F. Li, and S. M. Wong. 2006. Hibiscus chlorotic ringspot virus p27 and its isoforms affect symptom expression and potentiate virus movement in kenaf (Hibiscus cannabinus L.). Mol. Plant-Microbe Interact. 19:948-957. (Pubitemid 44260237)
-
(2006)
Molecular Plant-Microbe Interactions
, vol.19
, Issue.9
, pp. 948-957
-
-
Zhou, T.1
Fan, Z.F.2
Li, H.F.3
Wong, S.M.4
|