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Volumn 5, Issue 10, 2009, Pages

Intrinsic structural disorder confers cellular viability on oncogenic fusion proteins

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACIDS; ENZYMES; HYDROPHOBICITY; SURFACE CHEMISTRY; TRANSCRIPTION;

EID: 73549101052     PISSN: 1553734X     EISSN: 15537358     Source Type: Journal    
DOI: 10.1371/journal.pcbi.1000552     Document Type: Article
Times cited : (74)

References (51)
  • 1
    • 29444434887 scopus 로고    scopus 로고
    • Causes of oncogenic chromosomal translocation
    • Aplan PD (2006) Causes of oncogenic chromosomal translocation. Trends Genet 22(1): 46-55.
    • (2006) Trends Genet , vol.22 , Issue.1 , pp. 46-55
    • Aplan, P.D.1
  • 3
    • 0037393557 scopus 로고    scopus 로고
    • Chromosomal translocation products engender new intracellular therapeutic technologies
    • Rabbitts TH, Stocks MR (2003) Chromosomal translocation products engender new intracellular therapeutic technologies. Nat Med 9(4): 383-6.
    • (2003) Nat Med , vol.9 , Issue.4 , pp. 383-386
    • Rabbitts, T.H.1    Stocks, M.R.2
  • 4
    • 0035750347 scopus 로고    scopus 로고
    • Chromosome translocations: Dangerous liaisons revisited
    • Rowley JD (2001) Chromosome translocations: dangerous liaisons revisited. Nat Rev Cancer 1(3): 245-50.
    • (2001) Nat Rev Cancer , vol.1 , Issue.3 , pp. 245-250
    • Rowley, J.D.1
  • 5
    • 0029087475 scopus 로고
    • Alternative signals to RAS for hematopoietic transformation by the BCR-ABL oncogene
    • Goga A, McLaughlin J, Afar DE, Saffran DC, Witte ON (1995) Alternative signals to RAS for hematopoietic transformation by the BCR-ABL oncogene. Cell 82(6): 981-8.
    • (1995) Cell , vol.82 , Issue.6 , pp. 981-988
    • Goga, A.1    McLaughlin, J.2    Afar, D.E.3    Saffran, D.C.4    Witte, O.N.5
  • 7
    • 0031972784 scopus 로고    scopus 로고
    • The oncogenic capacity of HRX-ENL requires the transcriptional transactivation activity of ENL and the DNA binding motifs of HRX
    • Slany RK, Lavau C, Cleary ML (1998) The oncogenic capacity of HRX-ENL requires the transcriptional transactivation activity of ENL and the DNA binding motifs of HRX. Mol Cell Biol 18(1): 122-9.
    • (1998) Mol Cell Biol , vol.18 , Issue.1 , pp. 122-129
    • Slany, R.K.1    Lavau, C.2    Cleary, M.L.3
  • 8
    • 14644435825 scopus 로고    scopus 로고
    • Intrinsically unstructured proteins and their functions
    • Dyson HJ, Wright PE (2005) Intrinsically unstructured proteins and their functions. Nat Rev Mol Cell Biol 6(3): 197-208.
    • (2005) Nat Rev Mol Cell Biol , vol.6 , Issue.3 , pp. 197-208
    • Dyson, H.J.1    Wright, P.E.2
  • 9
    • 0036730163 scopus 로고    scopus 로고
    • The promiscuous MLL gene links chromosomal translocations to cellular differentiation and tumour tropism
    • Collins EC, Rabbitts TH (2002) The promiscuous MLL gene links chromosomal translocations to cellular differentiation and tumour tropism. Trends Mol Med 8(9): 436-42.
    • (2002) Trends Mol Med , vol.8 , Issue.9 , pp. 436-442
    • Collins, E.C.1    Rabbitts, T.H.2
  • 10
    • 33846317372 scopus 로고    scopus 로고
    • Multiple aromatic side chains within a disordered structure are critical for transcription and transforming activity of EWS family oncoproteins
    • Ng KP, Potikyan G, Savene RO, Denny CT, Uversky VN, Lee KA (2007) Multiple aromatic side chains within a disordered structure are critical for transcription and transforming activity of EWS family oncoproteins. Proc Natl Acad Sci U S A 104(2): 479-84.
    • (2007) Proc Natl Acad Sci U S A , vol.104 , Issue.2 , pp. 479-484
    • Ng, K.P.1    Potikyan, G.2    Savene, R.O.3    Denny, C.T.4    Uversky, V.N.5    Lee, K.A.6
  • 11
    • 0036803243 scopus 로고    scopus 로고
    • Intrinsically unstructured proteins
    • Tompa P (2002) Intrinsically unstructured proteins. Trends Biochem Sci 27(10): 527-533.
    • (2002) Trends Biochem Sci , vol.27 , Issue.10 , pp. 527-533
    • Tompa, P.1
  • 12
    • 25144472591 scopus 로고    scopus 로고
    • Showing your ID: Intrinsic disorder as an ID for recognition, regulation and cell signaling
    • Uversky VN, Oldfield CJ, Dunker AK (2005) Showing your ID: intrinsic disorder as an ID for recognition, regulation and cell signaling. J Mol Recognit 18(5): 343-84.
    • (2005) J Mol Recognit , vol.18 , Issue.5 , pp. 343-384
    • Uversky, V.N.1    Oldfield, C.J.2    Dunker, A.K.3
  • 13
    • 0036408751 scopus 로고    scopus 로고
    • Intrinsic Disorder in Cell-signaling and Cancer-associated Proteins
    • Iakoucheva L, Brown C, Lawson J, Obradovic Z, Dunker A (2002) Intrinsic Disorder in Cell-signaling and Cancer-associated Proteins. J Mol Biol 323(3): 573-584.
    • (2002) J Mol Biol , vol.323 , Issue.3 , pp. 573-584
    • Iakoucheva, L.1    Brown, C.2    Lawson, J.3    Obradovic, Z.4    Dunker, A.5
  • 14
    • 33744829805 scopus 로고    scopus 로고
    • Human transcription factors contain a high fraction of intrinsically disordered regions essential for transcriptional regulation
    • Minezaki Y, Homma K, Kinjo AR, Nishikawa K (2006) Human transcription factors contain a high fraction of intrinsically disordered regions essential for transcriptional regulation. J Mol Biol 359(4): 1137-49.
    • (2006) J Mol Biol , vol.359 , Issue.4 , pp. 1137-1149
    • Minezaki, Y.1    Homma, K.2    Kinjo, A.R.3    Nishikawa, K.4
  • 15
    • 1542358787 scopus 로고    scopus 로고
    • Prediction and functional analysis of native disorder in proteins from the three kingdoms of life
    • Ward JJ, Sodhi JS, McGuffin LJ, Buxton BF, Jones DT (2004) Prediction and functional analysis of native disorder in proteins from the three kingdoms of life. J Mol Biol 337(3): 635-45.
    • (2004) J Mol Biol , vol.337 , Issue.3 , pp. 635-645
    • Ward, J.J.1    Sodhi, J.S.2    McGuffin, L.J.3    Buxton, B.F.4    Jones, D.T.5
  • 17
    • 24044538903 scopus 로고    scopus 로고
    • IUPred: Web server for the prediction of intrinsically unstructured regions of proteins based on estimated energy content
    • Dosztanyi Z, Csizmok V, Tompa P, Simon I (2005) IUPred: web server for the prediction of intrinsically unstructured regions of proteins based on estimated energy content. Bioinformatics 21(16): 3433-4.
    • (2005) Bioinformatics , vol.21 , Issue.16 , pp. 3433-3434
    • Dosztanyi, Z.1    Csizmok, V.2    Tompa, P.3    Simon, I.4
  • 19
    • 33750999318 scopus 로고    scopus 로고
    • Disorder and sequence repeats in hub proteins and their implications for network evolution
    • Dosztanyi Z, Chen J, Dunker AK, Simon I, Tompa P (2006) Disorder and sequence repeats in hub proteins and their implications for network evolution. J Proteome Res 5(11): 2985-95.
    • (2006) J Proteome Res , vol.5 , Issue.11 , pp. 2985-2995
    • Dosztanyi, Z.1    Chen, J.2    Dunker, A.K.3    Simon, I.4    Tompa, P.5
  • 20
    • 33745686603 scopus 로고    scopus 로고
    • What properties characterize the hub proteins of the protein-protein interaction network of Saccharomyces cerevisiae?
    • Ekman D, Light S, Bjorklund AK, Elofsson A (2006) What properties characterize the hub proteins of the protein-protein interaction network of Saccharomyces cerevisiae? Genome Biol 7(6): R45.
    • (2006) Genome Biol , vol.7 , Issue.6
    • Ekman, D.1    Light, S.2    Bjorklund, A.K.3    Elofsson, A.4
  • 21
    • 0026703224 scopus 로고
    • A new gene, BCM, on chromosome 16 is fused to the interleukin 2 gene by a t(4;16)(q26;p13) translocation in a malignant T cell lymphoma
    • Laabi Y, Gras MP, Carbonnel F, Brouet JC, Berger R, Larsen CJ, Tsapis A (1992) A new gene, BCM, on chromosome 16 is fused to the interleukin 2 gene by a t(4;16)(q26;p13) translocation in a malignant T cell lymphoma. Embo J 11(11): 3897-904.
    • (1992) Embo J , vol.11 , Issue.11 , pp. 3897-3904
    • Laabi, Y.1    Gras, M.P.2    Carbonnel, F.3    Brouet, J.C.4    Berger, R.5    Larsen, C.J.6    Tsapis, A.7
  • 22
    • 11144230087 scopus 로고    scopus 로고
    • A novel method reveals that solvent water favors polyproline II over beta-strand conformation in peptides and unfolded proteins: Conditional hydrophobic accessible surface area (CHASA)
    • Fleming PJ, Fitzkee NC, Mezei M, Srinivasan R, Rose GD (2005) A novel method reveals that solvent water favors polyproline II over beta-strand conformation in peptides and unfolded proteins: conditional hydrophobic accessible surface area (CHASA). Protein Sci 14(1): 111-8.
    • (2005) Protein Sci , vol.14 , Issue.1 , pp. 111-118
    • Fleming, P.J.1    Fitzkee, N.C.2    Mezei, M.3    Srinivasan, R.4    Rose, G.D.5
  • 25
    • 36049051915 scopus 로고    scopus 로고
    • Oncogenic activation of the Met receptor tyrosine kinase fusion protein, Tpr-Met, involves exclusion from the endocytic degradative pathway
    • Mak HH, Peschard P, Lin T, Naujokas MA, Zuo D, Park M (2007) Oncogenic activation of the Met receptor tyrosine kinase fusion protein, Tpr-Met, involves exclusion from the endocytic degradative pathway. Oncogene 26(51): 7213-21.
    • (2007) Oncogene , vol.26 , Issue.51 , pp. 7213-7221
    • Mak, H.H.1    Peschard, P.2    Lin, T.3    Naujokas, M.A.4    Zuo, D.5    Park, M.6
  • 26
    • 0030934862 scopus 로고    scopus 로고
    • Role of the nucleophosmin (NPM) portion of the non-Hodgkin's lymphoma-associated NPM-anaplastic lymphoma kinase fusion protein in oncogenesis
    • Bischof D, Pulford K, Mason DY, Morris SW (1997) Role of the nucleophosmin (NPM) portion of the non-Hodgkin's lymphoma-associated NPM-anaplastic lymphoma kinase fusion protein in oncogenesis. Mol Cell Biol 17(4): 2312-25.
    • (1997) Mol Cell Biol , vol.17 , Issue.4 , pp. 2312-2325
    • Bischof, D.1    Pulford, K.2    Mason, D.Y.3    Morris, S.W.4
  • 28
    • 0032568350 scopus 로고    scopus 로고
    • The EWS/ATF1 fusion protein contains a dispersed activation domain that functions directly
    • Pan S, Ming KY, Dunn TA, Li KK, Lee KA (1998) The EWS/ATF1 fusion protein contains a dispersed activation domain that functions directly. Oncogene 16(12): 1625-31.
    • (1998) Oncogene , vol.16 , Issue.12 , pp. 1625-1631
    • Pan, S.1    Ming, K.Y.2    Dunn, T.A.3    Li, K.K.4    Lee, K.A.5
  • 29
    • 0034282527 scopus 로고    scopus 로고
    • Chromatin-related properties of CBP fused to MLL generate a myelodysplastic-like syndrome that evolves into myeloid leukemia
    • Lavau C, Du C, Thirman M, Zeleznik-Le N (2000) Chromatin-related properties of CBP fused to MLL generate a myelodysplastic-like syndrome that evolves into myeloid leukemia. Embo J 19(17): 4655-64.
    • (2000) Embo J , vol.19 , Issue.17 , pp. 4655-4664
    • Lavau, C.1    Du, C.2    Thirman, M.3    Zeleznik-Le, N.4
  • 30
    • 65449183174 scopus 로고    scopus 로고
    • Signatures of selection in fusion transcripts resulting from chromosomal translocations in human cancer
    • Ortiz de Mendibil I, Vizmanos JL, Novo FJ (2009) Signatures of selection in fusion transcripts resulting from chromosomal translocations in human cancer. PLoS One 4(3): e4805.
    • (2009) PLoS One , vol.4 , Issue.3
    • Ortiz de Mendibil, I.1    Vizmanos, J.L.2    Novo, F.J.3
  • 31
    • 3442902456 scopus 로고    scopus 로고
    • The role of structural disorder in the function of RNA and protein chaperones
    • Tompa P, Csermely P (2004) The role of structural disorder in the function of RNA and protein chaperones. FASEB J 18(11): 1169-75.
    • (2004) FASEB J , vol.18 , Issue.11 , pp. 1169-1175
    • Tompa, P.1    Csermely, P.2
  • 32
    • 37749053887 scopus 로고    scopus 로고
    • Fuzzy complexes: Polymorphism and structural disorder in protein-protein interactions
    • Tompa P, Fuxreiter M (2008) Fuzzy complexes: polymorphism and structural disorder in protein-protein interactions. Trends Biochem Sci 33(1): 2-8.
    • (2008) Trends Biochem Sci , vol.33 , Issue.1 , pp. 2-8
    • Tompa, P.1    Fuxreiter, M.2
  • 33
    • 0037459341 scopus 로고    scopus 로고
    • Variation on an Src-like theme
    • Harrison SC (2003) Variation on an Src-like theme. Cell 112(6): 737-40.
    • (2003) Cell , vol.112 , Issue.6 , pp. 737-740
    • Harrison, S.C.1
  • 34
    • 0042203565 scopus 로고    scopus 로고
    • SH2 and PTB domains in tyrosine kinase signaling
    • Schlessinger J, Lemmon MA (2003) SH2 and PTB domains in tyrosine kinase signaling. Sci STKE 2003(191): RE12.
    • (2003) Sci STKE 2003 , vol.191
    • Schlessinger, J.1    Lemmon, M.A.2
  • 36
    • 0035839885 scopus 로고    scopus 로고
    • Chromosomal translocation master genes, mouse models and experimental therapeutics
    • Rabbitts TH (2001) Chromosomal translocation master genes, mouse models and experimental therapeutics. Oncogene 20(40): 5763-77.
    • (2001) Oncogene , vol.20 , Issue.40 , pp. 5763-5777
    • Rabbitts, T.H.1
  • 37
    • 38549164691 scopus 로고    scopus 로고
    • Benson DA, Karsch-Mizrachi I, Lipman DJ, Ostell J, Wheeler DL (2008) GenBank. Nucleic Acids Res 36(Database issue): D25-30.
    • Benson DA, Karsch-Mizrachi I, Lipman DJ, Ostell J, Wheeler DL (2008) GenBank. Nucleic Acids Res 36(Database issue): D25-30.
  • 39
    • 33846910723 scopus 로고    scopus 로고
    • TICdb: A collection of gene-mapped translocation breakpoints in cancer
    • Novo FJ, de Mendibil IO, Vizmanos JL (2007) TICdb: a collection of gene-mapped translocation breakpoints in cancer. BMC Genomics 8: 33.
    • (2007) BMC Genomics , vol.8 , pp. 33
    • Novo, F.J.1    de Mendibil, I.O.2    Vizmanos, J.L.3
  • 41
    • 38549176691 scopus 로고    scopus 로고
    • Flicek P, Aken BL, Beal K, Ballester B, Caccamo M, Chen Y, Clarke L, Coates G, Cunningham F, Cutts T, Down T, Dyer SC, Eyre T, Fitzgerald S, Fernandez-Banet J, Graf S, Haider S, Hammond M, Holland R, Howe KL, Howe K, Johnson N, Jenkinson A, Kahari A, Keefe D, Kokocinski F, Kulesha E, Lawson D, Longden I, Megy K, Meidl P, Overduin B, Parker A, Pritchard B, Prlic A, Rice S, Rios D, Schuster M, Sealy I, Slater G, Smedley D, Spudich G, Trevanion S, Vilella AJ, Vogel J, White S, Wood M, Birney E, Cox T, Curwen V, Durbin R, Fernandez-Suarez XM, Herrero J, Hubbard TJ, Kasprzyk A, Proctor G, Smith J, Ureta-Vidal A, Searle S (2008) Ensembl 2008. Nucleic Acids Res 36(Database issue): D707-14.
    • Flicek P, Aken BL, Beal K, Ballester B, Caccamo M, Chen Y, Clarke L, Coates G, Cunningham F, Cutts T, Down T, Dyer SC, Eyre T, Fitzgerald S, Fernandez-Banet J, Graf S, Haider S, Hammond M, Holland R, Howe KL, Howe K, Johnson N, Jenkinson A, Kahari A, Keefe D, Kokocinski F, Kulesha E, Lawson D, Longden I, Megy K, Meidl P, Overduin B, Parker A, Pritchard B, Prlic A, Rice S, Rios D, Schuster M, Sealy I, Slater G, Smedley D, Spudich G, Trevanion S, Vilella AJ, Vogel J, White S, Wood M, Birney E, Cox T, Curwen V, Durbin R, Fernandez-Suarez XM, Herrero J, Hubbard TJ, Kasprzyk A, Proctor G, Smith J, Ureta-Vidal A, Searle S (2008) Ensembl 2008. Nucleic Acids Res 36(Database issue): D707-14.
  • 43
    • 43149094164 scopus 로고    scopus 로고
    • Pfam 10 years on: 10,000 families and still growing
    • Sammut SJ, Finn RD, Bateman A (2008) Pfam 10 years on: 10,000 families and still growing. Brief Bioinform 9(3): 210-9.
    • (2008) Brief Bioinform , vol.9 , Issue.3 , pp. 210-219
    • Sammut, S.J.1    Finn, R.D.2    Bateman, A.3
  • 44
    • 31744450975 scopus 로고    scopus 로고
    • Evolution of new protein topologies through multistep gene rearrangements
    • Peisajovich SG, Rockah L, Tawfik DS (2006) Evolution of new protein topologies through multistep gene rearrangements. Nat Genet 38(2): 168-74.
    • (2006) Nat Genet , vol.38 , Issue.2 , pp. 168-174
    • Peisajovich, S.G.1    Rockah, L.2    Tawfik, D.S.3
  • 45
    • 0017187836 scopus 로고
    • The nature of the accessible and buried surfaces in proteins
    • Chothia C (1976) The nature of the accessible and buried surfaces in proteins. J Mol Biol 105(1): 1-12.
    • (1976) J Mol Biol , vol.105 , Issue.1 , pp. 1-12
    • Chothia, C.1
  • 46
    • 0017154517 scopus 로고
    • Surface area of globular proteins
    • Janin J (1976) Surface area of globular proteins. J Mol Biol 105(1): 13-4.
    • (1976) J Mol Biol , vol.105 , Issue.1 , pp. 13-14
    • Janin, J.1
  • 48
    • 35348866182 scopus 로고    scopus 로고
    • Versatile annotation and publication quality visualization of protein complexes using POLYVIEW-3D
    • Porollo A, Meller J (2007) Versatile annotation and publication quality visualization of protein complexes using POLYVIEW-3D. BMC Bioinformatics 8: 316.
    • (2007) BMC Bioinformatics , vol.8 , pp. 316
    • Porollo, A.1    Meller, J.2


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