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Volumn 5, Issue 8, 1997, Pages 1093-1109

CATH - A hierarchic classification of protein domain structures

Author keywords

Evolution; Fold families; Protein structure classification

Indexed keywords


EID: 0030777303     PISSN: 09692126     EISSN: None     Source Type: Journal    
DOI: 10.1016/s0969-2126(97)00260-8     Document Type: Article
Times cited : (2207)

References (44)
  • 1
    • 0028593509 scopus 로고
    • Protein superfamilies and domain superfolds
    • Orengo, C.A., Jones, D.T., Taylor, W. & Thornton, J.M. (1994). Protein superfamilies and domain superfolds. Nature 372, 631-634.
    • (1994) Nature , vol.372 , pp. 631-634
    • Orengo, C.A.1    Jones, D.T.2    Taylor, W.3    Thornton, J.M.4
  • 2
    • 0027122748 scopus 로고
    • One thousand families for the molecular biologist
    • Chothia, C. (1993). One thousand families for the molecular biologist. Nature 357, 543-544.
    • (1993) Nature , vol.357 , pp. 543-544
    • Chothia, C.1
  • 3
    • 0022706389 scopus 로고
    • The relation between divergence of sequence and structure in proteins
    • Chothia, C. & Lesk, A.M. (1986). The relation between divergence of sequence and structure in proteins. EMBO J 5, 823-826.
    • (1986) EMBO J , vol.5 , pp. 823-826
    • Chothia, C.1    Lesk, A.M.2
  • 4
    • 0026030641 scopus 로고
    • Database of homology-derived protein structures and structural meaning of sequence alignments
    • Sander, C. & Schneider, R. (1991). Database of homology-derived protein structures and structural meaning of sequence alignments. Proteins 9, 56-68.
    • (1991) Proteins , vol.9 , pp. 56-68
    • Sander, C.1    Schneider, R.2
  • 5
    • 0344427398 scopus 로고
    • Conformational characteristics in structurally similar protein pairs
    • Flores, T.P, Orengo, C.A. & Thornton, J.M. (1993). Conformational characteristics in structurally similar protein pairs. Protein Sci. 7, 31-37.
    • (1993) Protein Sci. , vol.7 , pp. 31-37
    • Flores, T.P.1    Orengo, C.A.2    Thornton, J.M.3
  • 7
    • 0000454088 scopus 로고
    • Recurring structural motifs in proteins with different functions
    • Orengo, C.A., Flores, T.P., Taylor, W.R. & Thornton, J.M. (1993). Recurring structural motifs in proteins with different functions. Curr. Biol. 3, 131-139.
    • (1993) Curr. Biol. , vol.3 , pp. 131-139
    • Orengo, C.A.1    Flores, T.P.2    Taylor, W.R.3    Thornton, J.M.4
  • 8
    • 0027057526 scopus 로고
    • A database of protein structure families with common fold motifs
    • Holm, L., Ouzonis, C., Sander, C., Tuparev, G. & Vriend, G. (1993). A database of protein structure families with common fold motifs. Protein Sci. 1, 1691-1698.
    • (1993) Protein Sci. , vol.1 , pp. 1691-1698
    • Holm, L.1    Ouzonis, C.2    Sander, C.3    Tuparev, G.4    Vriend, G.5
  • 9
    • 0014757386 scopus 로고
    • A general method applicable to the search for similarities in the amino acid sequence of two proteins
    • Needleman, S.B. & Wunsch, C.D. (1970). A general method applicable to the search for similarities in the amino acid sequence of two proteins. J. Mol. Biol. 48, 443.
    • (1970) J. Mol. Biol. , vol.48 , pp. 443
    • Needleman, S.B.1    Wunsch, C.D.2
  • 10
    • 0024349252 scopus 로고
    • Protein structure alignment
    • Taylor, W.R. & Orengo, C.A. (1989). Protein structure alignment. J. Mol. Biol. 208, 1-22.
    • (1989) J. Mol. Biol. , vol.208 , pp. 1-22
    • Taylor, W.R.1    Orengo, C.A.2
  • 11
    • 0017411710 scopus 로고
    • The protein data bank: A computer based archival file for macromolecular structures
    • Bernstein, F.C., et al., & Tasumi, M. (1977). The protein data bank: a computer based archival file for macromolecular structures. J. Mol. Biol. 112, 535-542.
    • (1977) J. Mol. Biol. , vol.112 , pp. 535-542
    • Bernstein, F.C.1    Tasumi, M.2
  • 13
    • 0028319318 scopus 로고
    • Classification of protein folds
    • Orengo, C. (1994). Classification of protein folds. Curr. Opin. Struct. Biol. 4, 429-440.
    • (1994) Curr. Opin. Struct. Biol. , vol.4 , pp. 429-440
    • Orengo, C.1
  • 14
    • 0029785147 scopus 로고    scopus 로고
    • Mapping the protein universe
    • Holm. L. & Sander, C. (1996). Mapping the protein universe. Science 273, 595-602.
    • (1996) Science , vol.273 , pp. 595-602
    • Holm, L.1    Sander, C.2
  • 15
    • 0028232955 scopus 로고
    • Searching protein structure databases has come of age
    • Holm, L. & Sander, C. (1994). Searching protein structure databases has come of age. Proteins 19, 165-173.
    • (1994) Proteins , vol.19 , pp. 165-173
    • Holm, L.1    Sander, C.2
  • 16
    • 0001547102 scopus 로고    scopus 로고
    • A protein structure comparison methodology
    • Brown, N.P., Orengo, C.A. & Taylor, W.R. (1996). A protein structure comparison methodology. Comp. Chem. 20, 359-380.
    • (1996) Comp. Chem. , vol.20 , pp. 359-380
    • Brown, N.P.1    Orengo, C.A.2    Taylor, W.R.3
  • 17
    • 0028961335 scopus 로고
    • SCOP: A structural classification of the protein database for the investigation of sequence and structures
    • Murzin, A.G., Brenner, S.E., Hubbard, T. & Chothia, C. (1995). SCOP: a structural classification of the protein database for the investigation of sequence and structures. J. Mol. Biol. 247, 536-540.
    • (1995) J. Mol. Biol. , vol.247 , pp. 536-540
    • Murzin, A.G.1    Brenner, S.E.2    Hubbard, T.3    Chothia, C.4
  • 18
    • 0018785852 scopus 로고
    • Three-fold structural pattern in the soyabean trypsin inhibitor (Kunitz)
    • McLachlan, A.D. (1979). Three-fold structural pattern in the soyabean trypsin inhibitor (Kunitz). J. Mol. Biol. 133, 557-563.
    • (1979) J. Mol. Biol. , vol.133 , pp. 557-563
    • McLachlan, A.D.1
  • 19
    • 0027479161 scopus 로고
    • OB (oligonucleotide/oligosaccharide binding)-fold: Common structural and functional solution for non-homologous sequences
    • Murzin, A.G. (1993). OB (oligonucleotide/oligosaccharide binding)-fold: common structural and functional solution for non-homologous sequences. EMBO J. 12, 861-867.
    • (1993) EMBO J. , vol.12 , pp. 861-867
    • Murzin, A.G.1
  • 20
    • 0027991446 scopus 로고
    • The FSSP database of structurally aligned protein fold families
    • Holm, L, & Sander, C. (1994). The FSSP database of structurally aligned protein fold families. Nucleic Acid Res. 22, 3600-3609.
    • (1994) Nucleic Acid Res. , vol.22 , pp. 3600-3609
    • Holm, L.1    Sander, C.2
  • 21
  • 22
    • 0028937153 scopus 로고
    • A procedure for detecting structural domains in proteins
    • Swindells, M.B. (1995). A procedure for detecting structural domains in proteins. Protein Sci. 4, 103-112.
    • (1995) Protein Sci. , vol.4 , pp. 103-112
    • Swindells, M.B.1
  • 23
    • 0028290005 scopus 로고
    • Parser for protein folding units
    • Holm, L & Sander, C. (1993). Parser for protein folding units. Proteins 19, 256-268.
    • (1993) Proteins , vol.19 , pp. 256-268
    • Holm, L.1    Sander, C.2
  • 24
    • 0028943588 scopus 로고
    • Continuous and discontinuous domains: An algorithm for the automatic generation of reliable protein domain definitions
    • Siddiqui, A.S. & Barton, G.J. (1995). Continuous and discontinuous domains: an algorithm for the automatic generation of reliable protein domain definitions. Protein Sci. 4, 872-884.
    • (1995) Protein Sci. , vol.4 , pp. 872-884
    • Siddiqui, A.S.1    Barton, G.J.2
  • 25
    • 0028891784 scopus 로고
    • Identification and analysis of domains in proteins
    • Islam, S.A., Luo, J. & Sternberg, M.J.E. (1995). Identification and analysis of domains in proteins. Protein Eng. 8, 513-525.
    • (1995) Protein Eng. , vol.8 , pp. 513-525
    • Islam, S.A.1    Luo, J.2    Sternberg, M.J.E.3
  • 26
    • 0028914725 scopus 로고
    • An automatic method involving cluster analysis of secondary structures for identification of domains in proteins
    • Sowdhamini, R. & Blundell, T.L. (1995). An automatic method involving cluster analysis of secondary structures for identification of domains in proteins. Protein Sci. 4, 506-520.
    • (1995) Protein Sci. , vol.4 , pp. 506-520
    • Sowdhamini, R.1    Blundell, T.L.2
  • 27
    • 0030348027 scopus 로고    scopus 로고
    • A database of globular protein structural domains: Clustering of representative family members into similar folds
    • Sowdhamini, R. Rufino, S.D. & Blundell, T.L. (1996). A database of globular protein structural domains: clustering of representative family members into similar folds. Fold. Des. 1, 209-220.
    • (1996) Fold. Des. , vol.1 , pp. 209-220
    • Sowdhamini, R.1    Rufino, S.D.2    Blundell, T.L.3
  • 28
    • 0028373667 scopus 로고
    • Structure-based identification and clustering of protein families and superfamilies
    • Rufino, S.D. & Blundell, T.L. (1994). Structure-based identification and clustering of protein families and superfamilies. J. Comp. Aided Mol. Des. 8, 5-27.
    • (1994) J. Comp. Aided Mol. Des. , vol.8 , pp. 5-27
    • Rufino, S.D.1    Blundell, T.L.2
  • 29
    • 0017309766 scopus 로고
    • Structural patterns in globular proteins
    • Levitt, M. & Chothia, C.(1976). Structural patterns in globular proteins. Nature 261, 552-558.
    • (1976) Nature , vol.261 , pp. 552-558
    • Levitt, M.1    Chothia, C.2
  • 30
    • 0030595369 scopus 로고    scopus 로고
    • Analysis of domain structural class using an automated class assignment protocol
    • Michie, A.D., Orengo, C.A. & Thornton, J.M. (1996). Analysis of domain structural class using an automated class assignment protocol. J. Mol. Biol. 262, 168-185.
    • (1996) J. Mol. Biol. , vol.262 , pp. 168-185
    • Michie, A.D.1    Orengo, C.A.2    Thornton, J.M.3
  • 31
    • 0027918137 scopus 로고
    • Alpha plus beta folds revisited: Some favoured motifs
    • Orengo, C.A. & Thornton, J.M. (1994). Alpha plus beta folds revisited: some favoured motifs. Structure 1, 105-120.
    • (1994) Structure , vol.1 , pp. 105-120
    • Orengo, C.A.1    Thornton, J.M.2
  • 32
    • 0016302158 scopus 로고
    • Similarities of protein topologies: Evolutionary divergence, functional convergence or principles of folding
    • Ptitsyn, O.B. (1974). Similarities of protein topologies: evolutionary divergence, functional convergence or principles of folding. J. Mol. Biol. 88, 287-300.
    • (1974) J. Mol. Biol. , vol.88 , pp. 287-300
    • Ptitsyn, O.B.1
  • 33
    • 0026244229 scopus 로고
    • MOLSCRIPT: A program to produce both detailed and schematic plots of protein structures
    • Kraulis, P.J. (1991). MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures. J. Appl. Cryst. 24, 946-950.
    • (1991) J. Appl. Cryst. , vol.24 , pp. 946-950
    • Kraulis, P.J.1
  • 34
    • 0026759751 scopus 로고
    • Fast structure alignment for protein databank searching
    • Orengo, C.A., Brown, N.P. & Taylor, W.R. (1992). Fast structure alignment for protein databank searching. Proteins 14, 139-167.
    • (1992) Proteins , vol.14 , pp. 139-167
    • Orengo, C.A.1    Brown, N.P.2    Taylor, W.R.3
  • 35
    • 0026661145 scopus 로고
    • Selection of representative set of structures from Brookhaven Data Bank
    • Boberg, J. Salakoski, T. & Vihinen, M. (1992). Selection of representative set of structures from Brookhaven Data Bank. Proteins 14, 265-276.
    • (1992) Proteins , vol.14 , pp. 265-276
    • Boberg, J.1    Salakoski, T.2    Vihinen, M.3
  • 36
    • 0026511848 scopus 로고
    • A data bank merging related protein structures and sequences
    • Pascarella, S. & Argos, P. (1992). A data bank merging related protein structures and sequences. Protein Eng. 5, 121-137.
    • (1992) Protein Eng. , vol.5 , pp. 121-137
    • Pascarella, S.1    Argos, P.2
  • 37
    • 0027293521 scopus 로고
    • Molecular definition in protein families: A database of three-dimensional structures of related structures
    • Overington, J.P., et al., & Blundell, T.L. (1993). Molecular definition in protein families: a database of three-dimensional structures of related structures. Biochem. Soc. Transac. 21, 597-604.
    • (1993) Biochem. Soc. Transac. , vol.21 , pp. 597-604
    • Overington, J.P.1    Blundell, T.L.2
  • 38
    • 0026562263 scopus 로고
    • The SWISS-PROT protein sequence data bank
    • Bairoch, A. & Boeckmann, B. (1992). The SWISS-PROT protein sequence data bank. Nucleic Acid Res. 20, 2019-2022.
    • (1992) Nucleic Acid Res. , vol.20 , pp. 2019-2022
    • Bairoch, A.1    Boeckmann, B.2
  • 39
    • 0019443447 scopus 로고
    • The anatomy and taxonomy of protein structure
    • Richardson, J.S. (1981). The anatomy and taxonomy of protein structure. Adv. Prot. Chem. 34, 167-339.
    • (1981) Adv. Prot. Chem. , vol.34 , pp. 167-339
    • Richardson, J.S.1
  • 40
    • 0026671355 scopus 로고
    • Structural principles of the propellor assembly of beta sheets: The preference for seven-folded symmetry
    • Murzin, A.G. (1992). Structural principles of the propellor assembly of beta sheets: the preference for seven-folded symmetry. Proteins 14, 191-201.
    • (1992) Proteins , vol.14 , pp. 191-201
    • Murzin, A.G.1
  • 41
    • 0028181017 scopus 로고
    • An algorithm for automatically generating protein topologies
    • Flores, T.P., Moss, D.S. & Thornton, J.M. (1993). An algorithm for automatically generating protein topologies. Protein Eng. 7, 31-37.
    • (1993) Protein Eng. , vol.7 , pp. 31-37
    • Flores, T.P.1    Moss, D.S.2    Thornton, J.M.3
  • 42
    • 0025119856 scopus 로고
    • HERA: A program to draw schematic diagrams of protein secondary structure
    • Hutchinson, G.H. & Thornton, J.M. (1990). HERA: a program to draw schematic diagrams of protein secondary structure. Proteins 8, 203-212.
    • (1990) Proteins , vol.8 , pp. 203-212
    • Hutchinson, G.H.1    Thornton, J.M.2
  • 43
    • 0028922586 scopus 로고
    • LIGPLOT: A program to generate schematic diagrams of protein ligand interactions
    • Wallace, A.C. Laskowski, R.A. & Thornton, J.M. (1995). LIGPLOT: a program to generate schematic diagrams of protein ligand interactions. Protein Eng. 8, 127-134.
    • (1995) Protein Eng. , vol.8 , pp. 127-134
    • Wallace, A.C.1    Laskowski, R.A.2    Thornton, J.M.3
  • 44
    • 0020997912 scopus 로고
    • Dictionary of protein secondary structure
    • Kabsch, W. & Sander, C. (1983). Dictionary of protein secondary structure. Biopolymers 22, 2577-2637.
    • (1983) Biopolymers , vol.22 , pp. 2577-2637
    • Kabsch, W.1    Sander, C.2


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