-
1
-
-
0028593509
-
Protein superfamilies and domain superfolds
-
Orengo, C.A., Jones, D.T., Taylor, W. & Thornton, J.M. (1994). Protein superfamilies and domain superfolds. Nature 372, 631-634.
-
(1994)
Nature
, vol.372
, pp. 631-634
-
-
Orengo, C.A.1
Jones, D.T.2
Taylor, W.3
Thornton, J.M.4
-
2
-
-
0027122748
-
One thousand families for the molecular biologist
-
Chothia, C. (1993). One thousand families for the molecular biologist. Nature 357, 543-544.
-
(1993)
Nature
, vol.357
, pp. 543-544
-
-
Chothia, C.1
-
3
-
-
0022706389
-
The relation between divergence of sequence and structure in proteins
-
Chothia, C. & Lesk, A.M. (1986). The relation between divergence of sequence and structure in proteins. EMBO J 5, 823-826.
-
(1986)
EMBO J
, vol.5
, pp. 823-826
-
-
Chothia, C.1
Lesk, A.M.2
-
4
-
-
0026030641
-
Database of homology-derived protein structures and structural meaning of sequence alignments
-
Sander, C. & Schneider, R. (1991). Database of homology-derived protein structures and structural meaning of sequence alignments. Proteins 9, 56-68.
-
(1991)
Proteins
, vol.9
, pp. 56-68
-
-
Sander, C.1
Schneider, R.2
-
5
-
-
0344427398
-
Conformational characteristics in structurally similar protein pairs
-
Flores, T.P, Orengo, C.A. & Thornton, J.M. (1993). Conformational characteristics in structurally similar protein pairs. Protein Sci. 7, 31-37.
-
(1993)
Protein Sci.
, vol.7
, pp. 31-37
-
-
Flores, T.P.1
Orengo, C.A.2
Thornton, J.M.3
-
6
-
-
0027220647
-
Identifying and classifying protein fold families
-
Orengo, C.A., Flores, T.P., Taylor, W.R. & Thornton, J.M. (1993). Identifying and classifying protein fold families Protein Eng. 6, 485-500.
-
(1993)
Protein Eng.
, vol.6
, pp. 485-500
-
-
Orengo, C.A.1
Flores, T.P.2
Taylor, W.R.3
Thornton, J.M.4
-
7
-
-
0000454088
-
Recurring structural motifs in proteins with different functions
-
Orengo, C.A., Flores, T.P., Taylor, W.R. & Thornton, J.M. (1993). Recurring structural motifs in proteins with different functions. Curr. Biol. 3, 131-139.
-
(1993)
Curr. Biol.
, vol.3
, pp. 131-139
-
-
Orengo, C.A.1
Flores, T.P.2
Taylor, W.R.3
Thornton, J.M.4
-
8
-
-
0027057526
-
A database of protein structure families with common fold motifs
-
Holm, L., Ouzonis, C., Sander, C., Tuparev, G. & Vriend, G. (1993). A database of protein structure families with common fold motifs. Protein Sci. 1, 1691-1698.
-
(1993)
Protein Sci.
, vol.1
, pp. 1691-1698
-
-
Holm, L.1
Ouzonis, C.2
Sander, C.3
Tuparev, G.4
Vriend, G.5
-
9
-
-
0014757386
-
A general method applicable to the search for similarities in the amino acid sequence of two proteins
-
Needleman, S.B. & Wunsch, C.D. (1970). A general method applicable to the search for similarities in the amino acid sequence of two proteins. J. Mol. Biol. 48, 443.
-
(1970)
J. Mol. Biol.
, vol.48
, pp. 443
-
-
Needleman, S.B.1
Wunsch, C.D.2
-
10
-
-
0024349252
-
Protein structure alignment
-
Taylor, W.R. & Orengo, C.A. (1989). Protein structure alignment. J. Mol. Biol. 208, 1-22.
-
(1989)
J. Mol. Biol.
, vol.208
, pp. 1-22
-
-
Taylor, W.R.1
Orengo, C.A.2
-
11
-
-
0017411710
-
The protein data bank: A computer based archival file for macromolecular structures
-
Bernstein, F.C., et al., & Tasumi, M. (1977). The protein data bank: a computer based archival file for macromolecular structures. J. Mol. Biol. 112, 535-542.
-
(1977)
J. Mol. Biol.
, vol.112
, pp. 535-542
-
-
Bernstein, F.C.1
Tasumi, M.2
-
12
-
-
0002638513
-
Protein Data Bank
-
Allen, F.H., Bergerhoff, G. & Sievers, R., eds
-
Abola, E.E., Bernstein, F.C., Bryant, S.H., Koetzle, T.F. & Weng, J. (1987). Protein Data Bank. In Crystallographic Databases - Information Content, Software Systems, Scientific Applications (Allen, F.H., Bergerhoff, G. & Sievers, R., eds), pp. 107-132.
-
(1987)
Crystallographic Databases - Information Content, Software Systems, Scientific Applications
, pp. 107-132
-
-
Abola, E.E.1
Bernstein, F.C.2
Bryant, S.H.3
Koetzle, T.F.4
Weng, J.5
-
13
-
-
0028319318
-
Classification of protein folds
-
Orengo, C. (1994). Classification of protein folds. Curr. Opin. Struct. Biol. 4, 429-440.
-
(1994)
Curr. Opin. Struct. Biol.
, vol.4
, pp. 429-440
-
-
Orengo, C.1
-
14
-
-
0029785147
-
Mapping the protein universe
-
Holm. L. & Sander, C. (1996). Mapping the protein universe. Science 273, 595-602.
-
(1996)
Science
, vol.273
, pp. 595-602
-
-
Holm, L.1
Sander, C.2
-
15
-
-
0028232955
-
Searching protein structure databases has come of age
-
Holm, L. & Sander, C. (1994). Searching protein structure databases has come of age. Proteins 19, 165-173.
-
(1994)
Proteins
, vol.19
, pp. 165-173
-
-
Holm, L.1
Sander, C.2
-
16
-
-
0001547102
-
A protein structure comparison methodology
-
Brown, N.P., Orengo, C.A. & Taylor, W.R. (1996). A protein structure comparison methodology. Comp. Chem. 20, 359-380.
-
(1996)
Comp. Chem.
, vol.20
, pp. 359-380
-
-
Brown, N.P.1
Orengo, C.A.2
Taylor, W.R.3
-
17
-
-
0028961335
-
SCOP: A structural classification of the protein database for the investigation of sequence and structures
-
Murzin, A.G., Brenner, S.E., Hubbard, T. & Chothia, C. (1995). SCOP: a structural classification of the protein database for the investigation of sequence and structures. J. Mol. Biol. 247, 536-540.
-
(1995)
J. Mol. Biol.
, vol.247
, pp. 536-540
-
-
Murzin, A.G.1
Brenner, S.E.2
Hubbard, T.3
Chothia, C.4
-
18
-
-
0018785852
-
Three-fold structural pattern in the soyabean trypsin inhibitor (Kunitz)
-
McLachlan, A.D. (1979). Three-fold structural pattern in the soyabean trypsin inhibitor (Kunitz). J. Mol. Biol. 133, 557-563.
-
(1979)
J. Mol. Biol.
, vol.133
, pp. 557-563
-
-
McLachlan, A.D.1
-
19
-
-
0027479161
-
OB (oligonucleotide/oligosaccharide binding)-fold: Common structural and functional solution for non-homologous sequences
-
Murzin, A.G. (1993). OB (oligonucleotide/oligosaccharide binding)-fold: common structural and functional solution for non-homologous sequences. EMBO J. 12, 861-867.
-
(1993)
EMBO J.
, vol.12
, pp. 861-867
-
-
Murzin, A.G.1
-
20
-
-
0027991446
-
The FSSP database of structurally aligned protein fold families
-
Holm, L, & Sander, C. (1994). The FSSP database of structurally aligned protein fold families. Nucleic Acid Res. 22, 3600-3609.
-
(1994)
Nucleic Acid Res.
, vol.22
, pp. 3600-3609
-
-
Holm, L.1
Sander, C.2
-
21
-
-
0030014616
-
WWW-Entrez and the molecular modelling database
-
Hogue, C.W.V., Ohkawa, H. & Bryant, S.H. (1996). WWW-Entrez and the molecular modelling database. Trends. Biochem. Sci. 21, 226-229.
-
(1996)
Trends. Biochem. Sci.
, vol.21
, pp. 226-229
-
-
Hogue, C.W.V.1
Ohkawa, H.2
Bryant, S.H.3
-
22
-
-
0028937153
-
A procedure for detecting structural domains in proteins
-
Swindells, M.B. (1995). A procedure for detecting structural domains in proteins. Protein Sci. 4, 103-112.
-
(1995)
Protein Sci.
, vol.4
, pp. 103-112
-
-
Swindells, M.B.1
-
23
-
-
0028290005
-
Parser for protein folding units
-
Holm, L & Sander, C. (1993). Parser for protein folding units. Proteins 19, 256-268.
-
(1993)
Proteins
, vol.19
, pp. 256-268
-
-
Holm, L.1
Sander, C.2
-
24
-
-
0028943588
-
Continuous and discontinuous domains: An algorithm for the automatic generation of reliable protein domain definitions
-
Siddiqui, A.S. & Barton, G.J. (1995). Continuous and discontinuous domains: an algorithm for the automatic generation of reliable protein domain definitions. Protein Sci. 4, 872-884.
-
(1995)
Protein Sci.
, vol.4
, pp. 872-884
-
-
Siddiqui, A.S.1
Barton, G.J.2
-
25
-
-
0028891784
-
Identification and analysis of domains in proteins
-
Islam, S.A., Luo, J. & Sternberg, M.J.E. (1995). Identification and analysis of domains in proteins. Protein Eng. 8, 513-525.
-
(1995)
Protein Eng.
, vol.8
, pp. 513-525
-
-
Islam, S.A.1
Luo, J.2
Sternberg, M.J.E.3
-
26
-
-
0028914725
-
An automatic method involving cluster analysis of secondary structures for identification of domains in proteins
-
Sowdhamini, R. & Blundell, T.L. (1995). An automatic method involving cluster analysis of secondary structures for identification of domains in proteins. Protein Sci. 4, 506-520.
-
(1995)
Protein Sci.
, vol.4
, pp. 506-520
-
-
Sowdhamini, R.1
Blundell, T.L.2
-
27
-
-
0030348027
-
A database of globular protein structural domains: Clustering of representative family members into similar folds
-
Sowdhamini, R. Rufino, S.D. & Blundell, T.L. (1996). A database of globular protein structural domains: clustering of representative family members into similar folds. Fold. Des. 1, 209-220.
-
(1996)
Fold. Des.
, vol.1
, pp. 209-220
-
-
Sowdhamini, R.1
Rufino, S.D.2
Blundell, T.L.3
-
28
-
-
0028373667
-
Structure-based identification and clustering of protein families and superfamilies
-
Rufino, S.D. & Blundell, T.L. (1994). Structure-based identification and clustering of protein families and superfamilies. J. Comp. Aided Mol. Des. 8, 5-27.
-
(1994)
J. Comp. Aided Mol. Des.
, vol.8
, pp. 5-27
-
-
Rufino, S.D.1
Blundell, T.L.2
-
29
-
-
0017309766
-
Structural patterns in globular proteins
-
Levitt, M. & Chothia, C.(1976). Structural patterns in globular proteins. Nature 261, 552-558.
-
(1976)
Nature
, vol.261
, pp. 552-558
-
-
Levitt, M.1
Chothia, C.2
-
30
-
-
0030595369
-
Analysis of domain structural class using an automated class assignment protocol
-
Michie, A.D., Orengo, C.A. & Thornton, J.M. (1996). Analysis of domain structural class using an automated class assignment protocol. J. Mol. Biol. 262, 168-185.
-
(1996)
J. Mol. Biol.
, vol.262
, pp. 168-185
-
-
Michie, A.D.1
Orengo, C.A.2
Thornton, J.M.3
-
31
-
-
0027918137
-
Alpha plus beta folds revisited: Some favoured motifs
-
Orengo, C.A. & Thornton, J.M. (1994). Alpha plus beta folds revisited: some favoured motifs. Structure 1, 105-120.
-
(1994)
Structure
, vol.1
, pp. 105-120
-
-
Orengo, C.A.1
Thornton, J.M.2
-
32
-
-
0016302158
-
Similarities of protein topologies: Evolutionary divergence, functional convergence or principles of folding
-
Ptitsyn, O.B. (1974). Similarities of protein topologies: evolutionary divergence, functional convergence or principles of folding. J. Mol. Biol. 88, 287-300.
-
(1974)
J. Mol. Biol.
, vol.88
, pp. 287-300
-
-
Ptitsyn, O.B.1
-
33
-
-
0026244229
-
MOLSCRIPT: A program to produce both detailed and schematic plots of protein structures
-
Kraulis, P.J. (1991). MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures. J. Appl. Cryst. 24, 946-950.
-
(1991)
J. Appl. Cryst.
, vol.24
, pp. 946-950
-
-
Kraulis, P.J.1
-
34
-
-
0026759751
-
Fast structure alignment for protein databank searching
-
Orengo, C.A., Brown, N.P. & Taylor, W.R. (1992). Fast structure alignment for protein databank searching. Proteins 14, 139-167.
-
(1992)
Proteins
, vol.14
, pp. 139-167
-
-
Orengo, C.A.1
Brown, N.P.2
Taylor, W.R.3
-
35
-
-
0026661145
-
Selection of representative set of structures from Brookhaven Data Bank
-
Boberg, J. Salakoski, T. & Vihinen, M. (1992). Selection of representative set of structures from Brookhaven Data Bank. Proteins 14, 265-276.
-
(1992)
Proteins
, vol.14
, pp. 265-276
-
-
Boberg, J.1
Salakoski, T.2
Vihinen, M.3
-
36
-
-
0026511848
-
A data bank merging related protein structures and sequences
-
Pascarella, S. & Argos, P. (1992). A data bank merging related protein structures and sequences. Protein Eng. 5, 121-137.
-
(1992)
Protein Eng.
, vol.5
, pp. 121-137
-
-
Pascarella, S.1
Argos, P.2
-
37
-
-
0027293521
-
Molecular definition in protein families: A database of three-dimensional structures of related structures
-
Overington, J.P., et al., & Blundell, T.L. (1993). Molecular definition in protein families: a database of three-dimensional structures of related structures. Biochem. Soc. Transac. 21, 597-604.
-
(1993)
Biochem. Soc. Transac.
, vol.21
, pp. 597-604
-
-
Overington, J.P.1
Blundell, T.L.2
-
38
-
-
0026562263
-
The SWISS-PROT protein sequence data bank
-
Bairoch, A. & Boeckmann, B. (1992). The SWISS-PROT protein sequence data bank. Nucleic Acid Res. 20, 2019-2022.
-
(1992)
Nucleic Acid Res.
, vol.20
, pp. 2019-2022
-
-
Bairoch, A.1
Boeckmann, B.2
-
39
-
-
0019443447
-
The anatomy and taxonomy of protein structure
-
Richardson, J.S. (1981). The anatomy and taxonomy of protein structure. Adv. Prot. Chem. 34, 167-339.
-
(1981)
Adv. Prot. Chem.
, vol.34
, pp. 167-339
-
-
Richardson, J.S.1
-
40
-
-
0026671355
-
Structural principles of the propellor assembly of beta sheets: The preference for seven-folded symmetry
-
Murzin, A.G. (1992). Structural principles of the propellor assembly of beta sheets: the preference for seven-folded symmetry. Proteins 14, 191-201.
-
(1992)
Proteins
, vol.14
, pp. 191-201
-
-
Murzin, A.G.1
-
41
-
-
0028181017
-
An algorithm for automatically generating protein topologies
-
Flores, T.P., Moss, D.S. & Thornton, J.M. (1993). An algorithm for automatically generating protein topologies. Protein Eng. 7, 31-37.
-
(1993)
Protein Eng.
, vol.7
, pp. 31-37
-
-
Flores, T.P.1
Moss, D.S.2
Thornton, J.M.3
-
42
-
-
0025119856
-
HERA: A program to draw schematic diagrams of protein secondary structure
-
Hutchinson, G.H. & Thornton, J.M. (1990). HERA: a program to draw schematic diagrams of protein secondary structure. Proteins 8, 203-212.
-
(1990)
Proteins
, vol.8
, pp. 203-212
-
-
Hutchinson, G.H.1
Thornton, J.M.2
-
43
-
-
0028922586
-
LIGPLOT: A program to generate schematic diagrams of protein ligand interactions
-
Wallace, A.C. Laskowski, R.A. & Thornton, J.M. (1995). LIGPLOT: a program to generate schematic diagrams of protein ligand interactions. Protein Eng. 8, 127-134.
-
(1995)
Protein Eng.
, vol.8
, pp. 127-134
-
-
Wallace, A.C.1
Laskowski, R.A.2
Thornton, J.M.3
-
44
-
-
0020997912
-
Dictionary of protein secondary structure
-
Kabsch, W. & Sander, C. (1983). Dictionary of protein secondary structure. Biopolymers 22, 2577-2637.
-
(1983)
Biopolymers
, vol.22
, pp. 2577-2637
-
-
Kabsch, W.1
Sander, C.2
|