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Volumn 30, Issue 24, 2002, Pages 5382-5390

Comparative analysis of ribosomal proteins in complete genomes: An example of reductive evolution at the domain scale

Author keywords

[No Author keywords available]

Indexed keywords

RIBOSOME PROTEIN;

EID: 0037115872     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/gkf693     Document Type: Review
Times cited : (280)

References (79)
  • 1
    • 0025300402 scopus 로고
    • Towards a natural system of organisms: Proposal for the domains Archaea, Bacteria, and Eucarya
    • Woese,C.R., Kandler,O. and Wheelis,M.L. (1990) Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya. Proc. Natl Acad. Sci. USA, 87, 4576-4579.
    • (1990) Proc. Natl Acad. Sci. USA , vol.87 , pp. 4576-4579
    • Woese, C.R.1    Kandler, O.2    Wheelis, M.L.3
  • 5
    • 0034637111 scopus 로고    scopus 로고
    • The complete atomic structure of the large ribosomal subunit at 2.4 Å resolution
    • Ban,N., Nissen,P., Hansen,J., Moore,P.B. and Steitz,T.A. (2000) The complete atomic structure of the large ribosomal subunit at 2.4 Å resolution. Science, 289, 905-920.
    • (2000) Science , vol.289 , pp. 905-920
    • Ban, N.1    Nissen, P.2    Hansen, J.3    Moore, P.B.4    Steitz, T.A.5
  • 7
    • 0037154986 scopus 로고    scopus 로고
    • Ribosome structure and the mechanism of translation
    • Ramakrishnan,V. (2002) Ribosome structure and the mechanism of translation. Cell, 108, 557-572.
    • (2002) Cell , vol.108 , pp. 557-572
    • Ramakrishnan, V.1
  • 8
    • 0034637161 scopus 로고    scopus 로고
    • The structural basis of ribosome activity in peptide bond synthesis
    • Nissen,P., Hansen,J., Ban,N., Moore,P.B. and Steitz,T.A. (2000) The structural basis of ribosome activity in peptide bond synthesis. Science, 289, 920-930.
    • (2000) Science , vol.289 , pp. 920-930
    • Nissen, P.1    Hansen, J.2    Ban, N.3    Moore, P.B.4    Steitz, T.A.5
  • 9
    • 0034699519 scopus 로고    scopus 로고
    • Functional insights from the structure of the 30S ribosomal subunit and its interactions with antibiotics
    • Carter,A.P., Clemons,W.M., Brodersen,D.E., Morgan-Warren,R.J., Wimberly,B.T. and Ramakrishnan,V. (2000) Functional insights from the structure of the 30S ribosomal subunit and its interactions with antibiotics. Nature, 407, 340-348.
    • (2000) Nature , vol.407 , pp. 340-348
    • Carter, A.P.1    Clemons, W.M.2    Brodersen, D.E.3    Morgan-Warren, R.J.4    Wimberly, B.T.5    Ramakrishnan, V.6
  • 10
    • 0035798380 scopus 로고    scopus 로고
    • Structure of the 80S ribosome from Saccharomyces cerevisiae - tRNA-ribosome and subunit-subunit interactions
    • Spahn,C.M., Beckmann,R., Eswar,N., Penczek,P.A., Sali,A., Blobel,G. and Frank,J. (2001) Structure of the 80S ribosome from Saccharomyces cerevisiae - tRNA-ribosome and subunit-subunit interactions. Cell, 107, 373-386.
    • (2001) Cell , vol.107 , pp. 373-386
    • Spahn, C.M.1    Beckmann, R.2    Eswar, N.3    Penczek, P.A.4    Sali, A.5    Blobel, G.6    Frank, J.7
  • 11
    • 0031035094 scopus 로고    scopus 로고
    • Genome plasticity as a paradigm of eubacteria evolution
    • Watanabe,H., Mori,H., Itoh,T. and Gojobori,T. (1997) Genome plasticity as a paradigm of eubacteria evolution. J. Mol. Evol., 44 (Suppl 1), S57-S64.
    • (1997) J. Mol. Evol. , vol.44 , Issue.SUPPL. 1
    • Watanabe, H.1    Mori, H.2    Itoh, T.3    Gojobori, T.4
  • 12
    • 0002232560 scopus 로고    scopus 로고
    • Genomic analysis of the genes encoding ribosomal proteins in eight eubacterial species and Saccharomyces cerevisiae
    • Fujita,K., Baba,T. and Isono,K. (1998) Genomic analysis of the genes encoding ribosomal proteins in eight eubacterial species and Saccharomyces cerevisiae. Genome Inform. Ser. Workshop Genome Inform., 9, 3-12.
    • (1998) Genome Inform. Ser. Workshop Genome Inform. , vol.9 , pp. 3-12
    • Fujita, K.1    Baba, T.2    Isono, K.3
  • 13
    • 0032414407 scopus 로고    scopus 로고
    • Towards a reconstruction of ancestral genomes by gene cluster alignment
    • Wachtershauser,G. (1998) Towards a reconstruction of ancestral genomes by gene cluster alignment. Syst. Appl. Microbiol., 21, 473-477.
    • (1998) Syst. Appl. Microbiol. , vol.21 , pp. 473-477
    • Wachtershauser, G.1
  • 14
    • 0034306448 scopus 로고    scopus 로고
    • Gene context conservation of a higher order than operons
    • Lathe,W.C.,III, Snel,B. and Bork,P. (2000) Gene context conservation of a higher order than operons. Trends Biochem. Sci., 25, 474-479.
    • (2000) Trends Biochem. Sci. , vol.25 , pp. 474-479
    • Lathe W.C. III1    Snel, B.2    Bork, P.3
  • 15
    • 0035085816 scopus 로고    scopus 로고
    • Genome alignment, evolution of prokaryotic genome organization, and prediction of gene function using genomic context
    • Wolf,Y.I., Rogozin,I.B., Kondrashov,A.S. and Koonin,E.V. (2001) Genome alignment, evolution of prokaryotic genome organization, and prediction of gene function using genomic context. Genome Res., 11, 356-372.
    • (2001) Genome Res. , vol.11 , pp. 356-372
    • Wolf, Y.I.1    Rogozin, I.B.2    Kondrashov, A.S.3    Koonin, E.V.4
  • 16
    • 0035225012 scopus 로고    scopus 로고
    • Two C or not two C: Recurrent disruption of Zn-ribbons, gene duplication, lineage-specific gene loss, and horizontal gene transfer in evolution of bacterial ribosomal proteins
    • research0033.1-0033.13
    • Makarova,K.S., Ponomarev,V.A. and Koonin,E.V. (2001) Two C or not two C: recurrent disruption of Zn-ribbons, gene duplication, lineage-specific gene loss, and horizontal gene transfer in evolution of bacterial ribosomal proteins. Genome Biol., 2, research0033.1-0033.13.
    • (2001) Genome Biol. , vol.2
    • Makarova, K.S.1    Ponomarev, V.A.2    Koonin, E.V.3
  • 18
    • 2642645426 scopus 로고    scopus 로고
    • Cytoplasmic ribosomal protein genes of the fission yeast Schizosaccharomyces pombe display a unique promoter type: A suggestion for nomenclature of cytoplasmic ribosomal proteins in databases
    • Gross,T. and Kaufer,N.F. (1998) Cytoplasmic ribosomal protein genes of the fission yeast Schizosaccharomyces pombe display a unique promoter type: a suggestion for nomenclature of cytoplasmic ribosomal proteins in databases. Nucleic Acids Res., 26, 3319-3322.
    • (1998) Nucleic Acids Res. , vol.26 , pp. 3319-3322
    • Gross, T.1    Kaufer, N.F.2
  • 19
    • 0032579887 scopus 로고    scopus 로고
    • The list of cytoplasmic ribosomal proteins of Saccharomyces cerevisiae
    • Planta,R.J. and Mager,W.H. (1998) The list of cytoplasmic ribosomal proteins of Saccharomyces cerevisiae. Yeast, 14, 471-477.
    • (1998) Yeast , vol.14 , pp. 471-477
    • Planta, R.J.1    Mager, W.H.2
  • 22
    • 0035868428 scopus 로고    scopus 로고
    • A complete map of the human ribosomal protein genes: Assignment of 80 genes to the cytogenetic map and implications for human disorders
    • Uechi,T., Tanaka,T. and Kenmochi,N. (2001) A complete map of the human ribosomal protein genes: assignment of 80 genes to the cytogenetic map and implications for human disorders. Genomics, 72, 223-230.
    • (2001) Genomics , vol.72 , pp. 223-230
    • Uechi, T.1    Tanaka, T.2    Kenmochi, N.3
  • 24
    • 0029402642 scopus 로고
    • Structure and evolution of mammalian ribosomal proteins
    • Wool,I.G., Chan,Y.L. and Gluck,A. (1995) Structure and evolution of mammalian ribosomal proteins. Biochem. Cell Biol., 73, 933-947.
    • (1995) Biochem. Cell Biol. , vol.73 , pp. 933-947
    • Wool, I.G.1    Chan, Y.L.2    Gluck, A.3
  • 26
    • 0035162594 scopus 로고    scopus 로고
    • RefSeq and LocusLink: NCBI gene-centered resources
    • Pruitt,K.D. and Maglott,D.R. (2001) RefSeq and LocusLink: NCBI gene-centered resources. Nucleic Acids Res., 29, 137-140.
    • (2001) Nucleic Acids Res. , vol.29 , pp. 137-140
    • Pruitt, K.D.1    Maglott, D.R.2
  • 27
    • 0037100671 scopus 로고    scopus 로고
    • MAFFT: A novel method for rapid multiple sequence alignment based on fast Fourier transform
    • Katoh,K., Misawa,K., Kuma,K. and Miyata,T. (2002) MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Res., 30, 3059-3066.
    • (2002) Nucleic Acids Res. , vol.30 , pp. 3059-3066
    • Katoh, K.1    Misawa, K.2    Kuma, K.3    Miyata, T.4
  • 28
    • 0035824873 scopus 로고    scopus 로고
    • Towards a reliable objective function for multiple sequence alignments
    • Thompson,J.D., Plewniak,F., Ripp,R., Thierry,J.C. and Poch,O. (2001) Towards a reliable objective function for multiple sequence alignments. J. Mol. Biol., 314, 937-951.
    • (2001) J. Mol. Biol. , vol.314 , pp. 937-951
    • Thompson, J.D.1    Plewniak, F.2    Ripp, R.3    Thierry, J.C.4    Poch, O.5
  • 29
    • 0034572821 scopus 로고    scopus 로고
    • Towards understanding the first genome sequence of a crenarchaeon by genome annotation using clusters of orthologous groups of proteins (COGS)
    • research0009.1-0009.19
    • Natale,D.A., Shankavaram,U.T., Galperin,M.Y., Wolf,Y.I., Aravind,L. and Koonin,E.V. (2000) Towards understanding the first genome sequence of a crenarchaeon by genome annotation using clusters of orthologous groups of proteins (COGS). Genome Biol., 1, research0009.1-0009.19.
    • (2000) Genome Biol. , vol.1
    • Natale, D.A.1    Shankavaram, U.T.2    Galperin, M.Y.3    Wolf, Y.I.4    Aravind, L.5    Koonin, E.V.6
  • 30
    • 2142859937 scopus 로고    scopus 로고
    • Re-annotation of genome microbial CoDing-Sequences: Finding new genes and inaccurately annotated genes
    • Bocs,S., Danchin,A. and Medigue,C. (2002) Re-annotation of genome microbial CoDing-Sequences: finding new genes and inaccurately annotated genes. BMC Bioinformatics, 3, 5.
    • (2002) BMC Bioinformatics , vol.3 , pp. 5
    • Bocs, S.1    Danchin, A.2    Medigue, C.3
  • 31
    • 0033956060 scopus 로고    scopus 로고
    • The COG database: A tool for genome-scale analysis of protein functions and evolution
    • Tatusov,R.L., Galperin,M.Y., Natale,D.A. and Koonin,E.V. (2000) The COG database: a tool for genome-scale analysis of protein functions and evolution. Nucleic Acids Res., 28, 33-36.
    • (2000) Nucleic Acids Res. , vol.28 , pp. 33-36
    • Tatusov, R.L.1    Galperin, M.Y.2    Natale, D.A.3    Koonin, E.V.4
  • 33
    • 0016153699 scopus 로고
    • Assembly mapping of 30 S ribosomal proteins from Escherichia coli. Further studies
    • Held,W.A., Ballou,B., Mizushima,S. and Nomura,M. (1974) Assembly mapping of 30 S ribosomal proteins from Escherichia coli. Further studies. J. Biol. Chem., 249, 3103-3111.
    • (1974) J. Biol. Chem. , vol.249 , pp. 3103-3111
    • Held, W.A.1    Ballou, B.2    Mizushima, S.3    Nomura, M.4
  • 34
    • 0006002144 scopus 로고
    • Assembly map of the large subunit (50S) of Escherichia coli ribosomes
    • Rohl,R. and Nierhaus,K.H. (1982) Assembly map of the large subunit (50S) of Escherichia coli ribosomes. Proc. Natl Acad. Sci. USA, 79, 729-733.
    • (1982) Proc. Natl Acad. Sci. USA , vol.79 , pp. 729-733
    • Rohl, R.1    Nierhaus, K.H.2
  • 35
    • 0020016078 scopus 로고
    • Components of bacterial ribosomes
    • Wittmann,H.G. (1982) Components of bacterial ribosomes. Annu. Rev. Biochem., 51, 155-183.
    • (1982) Annu. Rev. Biochem. , vol.51 , pp. 155-183
    • Wittmann, H.G.1
  • 36
    • 0003074704 scopus 로고
    • Sequence comparison and evolution of ribosomal proteins and their genes
    • Hill, W.E., Dahlberg, R.E., Garrett, R.E., Moore, P.B., Schlessinger, D. and Warner, J.R. (eds), American Society of Microbiologists, Washington DC
    • Wittmann-Liebold,B., Kopke,A.K.E., Arndt,E., Kromer,W., Hatakeyama,T. and Wittman,H.-G. (1990) Sequence comparison and evolution of ribosomal proteins and their genes. In Hill,W.E., Dahlberg,R.E., Garrett,R.E., Moore,P.B., Schlessinger,D. and Warner,J.R. (eds), The Ribosome, Structure, Function and Evolution. American Society of Microbiologists, Washington DC, pp. 598-616.
    • (1990) The Ribosome, Structure, Function and Evolution , pp. 598-616
    • Wittmann-Liebold, B.1    Kopke, A.K.E.2    Arndt, E.3    Kromer, W.4    Hatakeyama, T.5    Wittman, H.-G.6
  • 37
    • 0029982589 scopus 로고    scopus 로고
    • Native 3D structure of eukaryotic 80s ribosome: Morphological homology with E. coli 70S ribosome
    • Verschoor,A., Srivastava,S., Grassucci,R. and Frank,J. (1996) Native 3D structure of eukaryotic 80s ribosome: morphological homology with E. coli 70S ribosome. J. Cell Biol., 133, 495-505.
    • (1996) J. Cell Biol. , vol.133 , pp. 495-505
    • Verschoor, A.1    Srivastava, S.2    Grassucci, R.3    Frank, J.4
  • 38
    • 0032510454 scopus 로고    scopus 로고
    • Archaeal genomics: Do archaea have a mixed heritage?
    • Doolittle,W.F. and Logsdon,J.M.,Jr (1998) Archaeal genomics: do archaea have a mixed heritage? Curr. Biol., 8, R209-R211.
    • (1998) Curr. Biol. , vol.8
    • Doolittle, W.F.1    Logsdon J.M., Jr.2
  • 39
    • 0032766490 scopus 로고    scopus 로고
    • Comparative genomics of the Archaea (Euryarchaeota): Evolution of conserved protein families, the stable core, and the variable shell
    • Makarova,K.S., Aravind,L., Galperin,M.Y., Grishin,N.V., Tatusov,R.L., Wolf,Y.I. and Koonin,E.V. (1999) Comparative genomics of the Archaea (Euryarchaeota): evolution of conserved protein families, the stable core, and the variable shell. Genome Res., 9, 608-628.
    • (1999) Genome Res. , vol.9 , pp. 608-628
    • Makarova, K.S.1    Aravind, L.2    Galperin, M.Y.3    Grishin, N.V.4    Tatusov, R.L.5    Wolf, Y.I.6    Koonin, E.V.7
  • 41
    • 0035834062 scopus 로고    scopus 로고
    • Visualization of protein S1 within the 30S ribosomal subunit and its interaction with messenger RNA
    • Sengupta,J., Agrawal,R.K. and Frank,J. (2001) Visualization of protein S1 within the 30S ribosomal subunit and its interaction with messenger RNA. Proc. Natl Acad. Sci. USA, 98, 11991-11996.
    • (2001) Proc. Natl Acad. Sci. USA , vol.98 , pp. 11991-11996
    • Sengupta, J.1    Agrawal, R.K.2    Frank, J.3
  • 42
    • 0034665988 scopus 로고    scopus 로고
    • The plastid ribosomal proteins. Identification of all the proteins in the 50 S subunit of an organelle ribosome (chloroplast)
    • Yamaguchi,K. and Subramanian,A.R. (2000) The plastid ribosomal proteins. Identification of all the proteins in the 50 S subunit of an organelle ribosome (chloroplast). J. Biol. Chem., 275, 28466-28482.
    • (2000) J. Biol. Chem. , vol.275 , pp. 28466-28482
    • Yamaguchi, K.1    Subramanian, A.R.2
  • 43
    • 0034666124 scopus 로고    scopus 로고
    • The plastid ribosomal proteins. Identification of all the proteins in the 30 S subunit of an organelle ribosome (chloroplast)
    • Yamaguchi,K., von Knoblauch,K. and Subramanian,A.R. (2000) The plastid ribosomal proteins. Identification of all the proteins in the 30 S subunit of an organelle ribosome (chloroplast). J. Biol. Chem., 275, 28455-28465.
    • (2000) J. Biol. Chem. , vol.275 , pp. 28455-28465
    • Yamaguchi, K.1    von Knoblauch, K.2    Subramanian, A.R.3
  • 44
    • 0016785846 scopus 로고
    • Evolution of organelles and eukaryotic genomes
    • Bogorad,L. (1975) Evolution of organelles and eukaryotic genomes. Science, 188, 891-898.
    • (1975) Science , vol.188 , pp. 891-898
    • Bogorad, L.1
  • 45
    • 0031925720 scopus 로고    scopus 로고
    • Growth phase coupled modulation of Escherichia coli ribosomes
    • Wada,A. (1998) Growth phase coupled modulation of Escherichia coli ribosomes. Genes Cells, 3, 203-208.
    • (1998) Genes Cells , vol.3 , pp. 203-208
    • Wada, A.1
  • 46
    • 0033541674 scopus 로고    scopus 로고
    • Observation of Escherichia coli ribosomal proteins and their posttranslational modifications by mass spectrometry
    • Arnold,R.J. and Reilly,J.P. (1999) Observation of Escherichia coli ribosomal proteins and their posttranslational modifications by mass spectrometry. Anal. Biochem., 269, 105-112.
    • (1999) Anal. Biochem. , vol.269 , pp. 105-112
    • Arnold, R.J.1    Reilly, J.P.2
  • 47
    • 0027621091 scopus 로고
    • Isolation and characterization of a new ribosomal protein from the thermophilic eubacteria, Thermus thermophilus, T. aquaticus and T. flavus
    • Choli,T., Franceschi,F., Yonath,A. and Wittmann-Liebold,B. (1993) Isolation and characterization of a new ribosomal protein from the thermophilic eubacteria, Thermus thermophilus, T. aquaticus and T. flavus. Biol. Chem Hoppe Seyler, 374, 377-383.
    • (1993) Biol. Chem Hoppe Seyler , vol.374 , pp. 377-383
    • Choli, T.1    Franceschi, F.2    Yonath, A.3    Wittmann-Liebold, B.4
  • 48
    • 0028117569 scopus 로고
    • Purification and characterization of the 30S ribosomal proteins from the bacterium Thermus thermophilus
    • Tsiboli,P., Herfurth,E. and Choli,T. (1994) Purification and characterization of the 30S ribosomal proteins from the bacterium Thermus thermophilus. Eur. J. Biochem., 226, 169-177.
    • (1994) Eur. J. Biochem. , vol.226 , pp. 169-177
    • Tsiboli, P.1    Herfurth, E.2    Choli, T.3
  • 49
    • 0030230748 scopus 로고    scopus 로고
    • Whither microbiology? Phylogenetic trees
    • Woese,C.R. (1996) Whither microbiology? Phylogenetic trees. Curr. Biol., 6, 1060-1063.
    • (1996) Curr. Biol. , vol.6 , pp. 1060-1063
    • Woese, C.R.1
  • 51
    • 0039861672 scopus 로고
    • Eocytes: A new ribosome structure indicates a kingdom with a close relationship to eukaryotes
    • Lake,J.A., Henderson,E., Oakes,M. and Clark,M.W. (1984) Eocytes: a new ribosome structure indicates a kingdom with a close relationship to eukaryotes. Proc. Natl Acad. Sci. USA, 81, 3786-3790.
    • (1984) Proc. Natl Acad. Sci. USA , vol.81 , pp. 3786-3790
    • Lake, J.A.1    Henderson, E.2    Oakes, M.3    Clark, M.W.4
  • 52
    • 0026684272 scopus 로고
    • Evidence that eukaryotes and eocyte prokaryotes are immediate relatives
    • Rivera,M.C. and Lake,J.A. (1992) Evidence that eukaryotes and eocyte prokaryotes are immediate relatives. Science, 257, 74-76.
    • (1992) Science , vol.257 , pp. 74-76
    • Rivera, M.C.1    Lake, J.A.2
  • 53
    • 0017820578 scopus 로고
    • Affinity labelling of yeast ribosomal peptidyl transferase
    • Perez-Gosalbez,M., Vazquez,D. and Ballesta,J.P. (1978) Affinity labelling of yeast ribosomal peptidyl transferase. Mol. Gen. Genet., 163, 29-34.
    • (1978) Mol. Gen. Genet. , vol.163 , pp. 29-34
    • Perez-Gosalbez, M.1    Vazquez, D.2    Ballesta, J.P.3
  • 54
    • 0022828837 scopus 로고
    • Photolabeling of protein components in the pactamycin binding site of rat liver ribosomes
    • Synetos,D., Amils,R. and Ballesta,J.P. (1986) Photolabeling of protein components in the pactamycin binding site of rat liver ribosomes. Biochim. Biophys. Acta, 868, 249-253.
    • (1986) Biochim. Biophys. Acta , vol.868 , pp. 249-253
    • Synetos, D.1    Amils, R.2    Ballesta, J.P.3
  • 55
    • 0021293798 scopus 로고
    • Affinity labelling of rat liver ribosomal protein S26 by heptauridylate containing a 5′-terminal alkylating group
    • Stahl,J. and Kobetz,N.D. (1984) Affinity labelling of rat liver ribosomal protein S26 by heptauridylate containing a 5′-terminal alkylating group. Mol. Biol. Rep., 9, 219-222.
    • (1984) Mol. Biol. Rep. , vol.9 , pp. 219-222
    • Stahl, J.1    Kobetz, N.D.2
  • 56
    • 0032512580 scopus 로고    scopus 로고
    • Triplet repeat-containing ribosomal protein L14 gene in immortalized human endothelial cell line (t-HUE4)
    • Tanaka,M., Tanaka,T., Harata,M., Suzuki,T. and Mitsui,Y. (1998) Triplet repeat-containing ribosomal protein L14 gene in immortalized human endothelial cell line (t-HUE4). Biochem. Biophys. Res. Commun., 243, 531-537.
    • (1998) Biochem. Biophys. Res. Commun. , vol.243 , pp. 531-537
    • Tanaka, M.1    Tanaka, T.2    Harata, M.3    Suzuki, T.4    Mitsui, Y.5
  • 57
    • 0027305846 scopus 로고
    • Ribosomal protein L32 of Saccharomyces cerevisiae regulates both splicing and translation of its own transcript
    • Dabeva,M.D. and Warner,J.R. (1993) Ribosomal protein L32 of Saccharomyces cerevisiae regulates both splicing and translation of its own transcript. J. Biol. Chem., 268, 19669-19674.
    • (1993) J. Biol. Chem. , vol.268 , pp. 19669-19674
    • Dabeva, M.D.1    Warner, J.R.2
  • 58
    • 0033634724 scopus 로고    scopus 로고
    • Multiple functions of an evolutionarily conserved RNA binding domain
    • Vilardell,J., Yu,S.J. and Warner,J.R. (2000) Multiple functions of an evolutionarily conserved RNA binding domain. Mol. Cell, 5, 761-766.
    • (2000) Mol. Cell , vol.5 , pp. 761-766
    • Vilardell, J.1    Yu, S.J.2    Warner, J.R.3
  • 59
    • 0032169271 scopus 로고    scopus 로고
    • Conservation of gene order: A fingerprint of proteins that physically interact
    • Dandekar,T., Snel,B., Huynen,M. and Bork,P. (1998) Conservation of gene order: a fingerprint of proteins that physically interact. Trends Biochem. Sci., 23, 324-328.
    • (1998) Trends Biochem. Sci. , vol.23 , pp. 324-328
    • Dandekar, T.1    Snel, B.2    Huynen, M.3    Bork, P.4
  • 60
    • 0024525024 scopus 로고
    • Structure and evolution of the L11, L1, L10, and L12 equivalent ribosomal proteins in eubacteria, archaebacteria, and eucaryotes
    • Ramirez,C., Shimmin,L.C., Newton,C.H., Matheson,A.T. and Dennis,P.P. (1989) Structure and evolution of the L11, L1, L10, and L12 equivalent ribosomal proteins in eubacteria, archaebacteria, and eucaryotes. Can. J. Microbiol., 35, 234-244.
    • (1989) Can. J. Microbiol. , vol.35 , pp. 234-244
    • Ramirez, C.1    Shimmin, L.C.2    Newton, C.H.3    Matheson, A.T.4    Dennis, P.P.5
  • 61
    • 0024448354 scopus 로고
    • Sequence alignment and evolutionary comparison of the L10 equivalent and L12 equivalent ribosomal proteins from archaebacteria, eubacteria, and eucaryotes
    • Shimmin,L.C., Ramirez,C., Matheson,A.T. and Dennis,P.P. (1989) Sequence alignment and evolutionary comparison of the L10 equivalent and L12 equivalent ribosomal proteins from archaebacteria, eubacteria, and eucaryotes. J. Mol. Evol., 29, 448-462.
    • (1989) J. Mol. Evol. , vol.29 , pp. 448-462
    • Shimmin, L.C.1    Ramirez, C.2    Matheson, A.T.3    Dennis, P.P.4
  • 62
    • 0032478087 scopus 로고    scopus 로고
    • Evolutionary analyses of the 12-kDa acidic ribosomal P-proteins reveal a distinct protein of higher plant ribosomes
    • Szick,K., Springer,M. and Bailey-Serres,J. (1998) Evolutionary analyses of the 12-kDa acidic ribosomal P-proteins reveal a distinct protein of higher plant ribosomes. Proc. Natl Acad. Sci. USA, 95, 2378-2383.
    • (1998) Proc. Natl Acad. Sci. USA , vol.95 , pp. 2378-2383
    • Szick, K.1    Springer, M.2    Bailey-Serres, J.3
  • 63
    • 0030449870 scopus 로고    scopus 로고
    • Complete genome sequences of cellular life forms: Glimpses of theoretical evolutionary genomics
    • Koonin,E.V. and Mushegian,A.R. (1996) Complete genome sequences of cellular life forms: glimpses of theoretical evolutionary genomics. Curr. Opin. Genet. Dev., 6, 757-762.
    • (1996) Curr. Opin. Genet. Dev. , vol.6 , pp. 757-762
    • Koonin, E.V.1    Mushegian, A.R.2
  • 64
    • 0032828663 scopus 로고    scopus 로고
    • Universal protein families and the functional content of the last universal common ancestor
    • Kyrpides,N., Overbeek,R. and Ouzounis,C. (1999) Universal protein families and the functional content of the last universal common ancestor. J. Mol. Evol., 49, 413-423.
    • (1999) J. Mol. Evol. , vol.49 , pp. 413-423
    • Kyrpides, N.1    Overbeek, R.2    Ouzounis, C.3
  • 65
    • 0035945246 scopus 로고    scopus 로고
    • Distribution of substitution rates and location of insertion sites in the tertiary structure of ribosomal RNA
    • Wuyts,J., Van de Peer,Y. and De Wachter,R. (2001) Distribution of substitution rates and location of insertion sites in the tertiary structure of ribosomal RNA. Nucleic Acids Res., 29, 5017-5028.
    • (2001) Nucleic Acids Res. , vol.29 , pp. 5017-5028
    • Wuyts, J.1    Van de Peer, Y.2    De Wachter, R.3
  • 66
    • 0029974453 scopus 로고    scopus 로고
    • Extraribosomal functions of ribosomal proteins
    • Wool,I.G. (1996) Extraribosomal functions of ribosomal proteins. Trends Biochem. Sci., 21, 164-165.
    • (1996) Trends Biochem. Sci. , vol.21 , pp. 164-165
    • Wool, I.G.1
  • 67
    • 0029877001 scopus 로고    scopus 로고
    • Comprehensive comparison of structural characteristics in eukaryotic cytoplasmic large subunit (23 S-like) ribosomal RNA
    • Schnare,M.N., Damberger,S.H., Gray,M.W. and Gutell,R.R. (1996) Comprehensive comparison of structural characteristics in eukaryotic cytoplasmic large subunit (23 S-like) ribosomal RNA. J. Mol. Biol., 256, 701-719.
    • (1996) J. Mol. Biol. , vol.256 , pp. 701-719
    • Schnare, M.N.1    Damberger, S.H.2    Gray, M.W.3    Gutell, R.R.4
  • 69
    • 0032145384 scopus 로고    scopus 로고
    • Microsporidian Encephalitozoon cuniculi, a unicellular eukaryote with an unusual chromosomal dispersion of ribosomal genes and a LSU rRNA reduced to the universal core
    • Peyretaillade,E., Biderre,C., Peyret,P., Duffieux,F., Metenier,G., Gouy,M., Michot,B. and Vivares,C.P. (1998) Microsporidian Encephalitozoon cuniculi, a unicellular eukaryote with an unusual chromosomal dispersion of ribosomal genes and a LSU rRNA reduced to the universal core. Nucleic Acids Res., 26, 3513-3520.
    • (1998) Nucleic Acids Res. , vol.26 , pp. 3513-3520
    • Peyretaillade, E.1    Biderre, C.2    Peyret, P.3    Duffieux, F.4    Metenier, G.5    Gouy, M.6    Michot, B.7    Vivares, C.P.8
  • 71
    • 0024967146 scopus 로고
    • Molecular phylogeny. Archaebacteria and Archezoa
    • Cavalier-Smith,T. (1989) Molecular phylogeny. Archaebacteria and Archezoa. Nature, 339, 100-101.
    • (1989) Nature , vol.339 , pp. 100-101
    • Cavalier-Smith, T.1
  • 72
    • 0034603818 scopus 로고    scopus 로고
    • Microsporidia: Accumulating molecular evidence that a group of amitochondriate and suspectedly primitive eukaryotes are just curious fungi
    • Van de Peer,Y., Ben Ali,A. and Meyer,A. (2000) Microsporidia: accumulating molecular evidence that a group of amitochondriate and suspectedly primitive eukaryotes are just curious fungi. Gene, 246, 1-8.
    • (2000) Gene , vol.246 , pp. 1-8
    • Van de Peer, Y.1    Ben Ali, A.2    Meyer, A.3
  • 74
    • 0035877697 scopus 로고    scopus 로고
    • Structural compensation for the deficit of rRNA with proteins in the mammalian mitochondrial ribosome. Systematic analysis of protein components of the large ribosomal subunit from mammalian mitochondria
    • Suzuki,T., Terasaki,M., Takemoto-Hori,C., Hanada,T., Ueda,T., Wada,A. and Watanabe,K. (2001) Structural compensation for the deficit of rRNA with proteins in the mammalian mitochondrial ribosome. Systematic analysis of protein components of the large ribosomal subunit from mammalian mitochondria. J. Biol. Chem., 276, 21724-21736.
    • (2001) J. Biol. Chem. , vol.276 , pp. 21724-21736
    • Suzuki, T.1    Terasaki, M.2    Takemoto-Hori, C.3    Hanada, T.4    Ueda, T.5    Wada, A.6    Watanabe, K.7
  • 76
    • 0033015732 scopus 로고    scopus 로고
    • Archaea sister group of Bacteria? Indications from tree reconstruction artifacts in ancient phylogenies
    • Brinkmann,H. and Philippe,H. (1999) Archaea sister group of Bacteria? Indications from tree reconstruction artifacts in ancient phylogenies. Mol. Biol. Evol., 16, 817-825.
    • (1999) Mol. Biol. Evol. , vol.16 , pp. 817-825
    • Brinkmann, H.1    Philippe, H.2
  • 77
    • 0024358140 scopus 로고
    • Evolutionary relationship of archaebacteria, eubacteria, and eukaryotes inferred from phylogenetic trees of duplicated genes
    • Iwabe,N., Kuma,K., Hasegawa,M., Osawa,S. and Miyata,T. (1989) Evolutionary relationship of archaebacteria, eubacteria, and eukaryotes inferred from phylogenetic trees of duplicated genes. Proc. Natl Acad. Sci. USA, 86, 9355-9359.
    • (1989) Proc. Natl Acad. Sci. USA , vol.86 , pp. 9355-9359
    • Iwabe, N.1    Kuma, K.2    Hasegawa, M.3    Osawa, S.4    Miyata, T.5
  • 78
    • 0345299175 scopus 로고    scopus 로고
    • Metabolic symbiosis at the origin of eukaryotes
    • Lopez-Garcia,P. and Moreira,D. (1999) Metabolic symbiosis at the origin of eukaryotes. Trends Biochem. Sci., 24, 88-93.
    • (1999) Trends Biochem. Sci. , vol.24 , pp. 88-93
    • Lopez-Garcia, P.1    Moreira, D.2
  • 79
    • 0027609916 scopus 로고
    • SETOR: Hardware-lighted three-dimensional solid model representations of macromolecules
    • Evans,S.V. (1993) SETOR: hardware-lighted three-dimensional solid model representations of macromolecules. J. Mol. Graph., 11, 134-138.
    • (1993) J. Mol. Graph. , vol.11 , pp. 134-138
    • Evans, S.V.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.