-
1
-
-
0016402401
-
The double helix: a personal view
-
Crick F. The double helix: a personal view. Nature 1974, 248:766-769.
-
(1974)
Nature
, vol.248
, pp. 766-769
-
-
Crick, F.1
-
2
-
-
0014462494
-
DNA modification and restriction
-
Arber W., Linn S. DNA modification and restriction. Annu. Rev. Biochem. 1969, 38:467-500.
-
(1969)
Annu. Rev. Biochem.
, vol.38
, pp. 467-500
-
-
Arber, W.1
Linn, S.2
-
3
-
-
0014277562
-
Host specificity of DNA produced by Escherichia coli, X. In vitro restriction of phage fd replicative form
-
Linn S., Arber W. Host specificity of DNA produced by Escherichia coli, X. In vitro restriction of phage fd replicative form. Proc. Nat. Acad. Sci. U.S.A. 1968, 59:1300-1306.
-
(1968)
Proc. Nat. Acad. Sci. U.S.A.
, vol.59
, pp. 1300-1306
-
-
Linn, S.1
Arber, W.2
-
4
-
-
84891061856
-
The awakening of DNA repair at Yale
-
Hanawalt P.C. The awakening of DNA repair at Yale. Yale J. Biol. Med. 2013, 86:517-523.
-
(2013)
Yale J. Biol. Med.
, vol.86
, pp. 517-523
-
-
Hanawalt, P.C.1
-
5
-
-
0028335180
-
Functional domains within FEN-1 and RAD2 define a family of structure-specific endonucleases: implications for nucleotide excision repair
-
Harrington J.J., Lieber M.R. Functional domains within FEN-1 and RAD2 define a family of structure-specific endonucleases: implications for nucleotide excision repair. Genes Dev. 1994, 8:1344-1355.
-
(1994)
Genes Dev.
, vol.8
, pp. 1344-1355
-
-
Harrington, J.J.1
Lieber, M.R.2
-
6
-
-
0028917289
-
DNA structural elements required for FEN-1 binding
-
Harrington J.J., Lieber M.R. DNA structural elements required for FEN-1 binding. J. Biol. Chem. 1995, 270:4503-4508.
-
(1995)
J. Biol. Chem.
, vol.270
, pp. 4503-4508
-
-
Harrington, J.J.1
Lieber, M.R.2
-
7
-
-
24044460415
-
DNA base damage recognition and removal: new twists and grooves
-
Huffman J.L., Sundheim O., Tainer J.A. DNA base damage recognition and removal: new twists and grooves. Mutat. Res. 2005, 577:55-76.
-
(2005)
Mutat. Res.
, vol.577
, pp. 55-76
-
-
Huffman, J.L.1
Sundheim, O.2
Tainer, J.A.3
-
8
-
-
0027376095
-
Resolution of Holliday junctions by RuvC resolvase: cleavage specificity and DNA distortion
-
Bennett R.J., Dunderdale H.J., West S.C. Resolution of Holliday junctions by RuvC resolvase: cleavage specificity and DNA distortion. Cell 1993, 74:1021-1031.
-
(1993)
Cell
, vol.74
, pp. 1021-1031
-
-
Bennett, R.J.1
Dunderdale, H.J.2
West, S.C.3
-
9
-
-
17344387757
-
Evaluation of single nucleotide polymorphism typing with invader on PCR amplicons and its automation
-
Mein C.A., Barratt B.J., Dunn M.G., Siegmund T., Smith A.N., Esposito L., Nutland S., Stevens H.E., Wilson A.J., Phillips M.S., Jarvis N., Law S., de Arruda M., Todd J.A. Evaluation of single nucleotide polymorphism typing with invader on PCR amplicons and its automation. Genome Res. 2000, 10:330-343.
-
(2000)
Genome Res.
, vol.10
, pp. 330-343
-
-
Mein, C.A.1
Barratt, B.J.2
Dunn, M.G.3
Siegmund, T.4
Smith, A.N.5
Esposito, L.6
Nutland, S.7
Stevens, H.E.8
Wilson, A.J.9
Phillips, M.S.10
Jarvis, N.11
Law, S.12
de Arruda, M.13
Todd, J.A.14
-
10
-
-
0034622643
-
Experimental and theoretical analysis of the invasive signal amplification reaction
-
Lyamichev V.I., Kaiser M.W., Lyamicheva N.E., Vologodskii A.V., Hall J.G., Ma W.P., Allawi H.T., Neri B.P. Experimental and theoretical analysis of the invasive signal amplification reaction. Biochemistry 2000, 39:9523-9532.
-
(2000)
Biochemistry
, vol.39
, pp. 9523-9532
-
-
Lyamichev, V.I.1
Kaiser, M.W.2
Lyamicheva, N.E.3
Vologodskii, A.V.4
Hall, J.G.5
Ma, W.P.6
Allawi, H.T.7
Neri, B.P.8
-
11
-
-
52949149420
-
Mre11 dimers coordinate DNA end bridging and nuclease processing in double-strand-break repair
-
Williams R.S., Moncalian G., Williams J.S., Yamada Y., Limbo O., Shin D.S., Groocock L.M., Cahill D., Hitomi C., Guenther G., Moiani D., Carney J.P., Russell P., Tainer J.A. Mre11 dimers coordinate DNA end bridging and nuclease processing in double-strand-break repair. Cell 2008, 135:97-109.
-
(2008)
Cell
, vol.135
, pp. 97-109
-
-
Williams, R.S.1
Moncalian, G.2
Williams, J.S.3
Yamada, Y.4
Limbo, O.5
Shin, D.S.6
Groocock, L.M.7
Cahill, D.8
Hitomi, C.9
Guenther, G.10
Moiani, D.11
Carney, J.P.12
Russell, P.13
Tainer, J.A.14
-
12
-
-
84892369333
-
DNA double-strand break repair pathway choice is directed by distinct MRE11 nuclease activities
-
Shibata A., Moiani D., Arvai A.S., Perry J., Harding S.M., Genois M.M., Maity R., van Rossum-Fikkert S., Kertokalio A., Romoli F., Ismail A., Ismalaj E., Petricci E., Neale M.J., Bristow R.G., Masson J.Y., Wyman C., Jeggo P.A., Tainer J.A. DNA double-strand break repair pathway choice is directed by distinct MRE11 nuclease activities. Mol. Cell 2014, 53:7-18.
-
(2014)
Mol. Cell
, vol.53
, pp. 7-18
-
-
Shibata, A.1
Moiani, D.2
Arvai, A.S.3
Perry, J.4
Harding, S.M.5
Genois, M.M.6
Maity, R.7
van Rossum-Fikkert, S.8
Kertokalio, A.9
Romoli, F.10
Ismail, A.11
Ismalaj, E.12
Petricci, E.13
Neale, M.J.14
Bristow, R.G.15
Masson, J.Y.16
Wyman, C.17
Jeggo, P.A.18
Tainer, J.A.19
-
13
-
-
44149094083
-
XPD helicase structures and activities: insights into the cancer and aging phenotypes from XPD mutations
-
Fan L., Fuss J.O., Cheng Q.J., Arvai A.S., Hammel M., Roberts V.A., Cooper P.K., Tainer J.A. XPD helicase structures and activities: insights into the cancer and aging phenotypes from XPD mutations. Cell 2008, 133:789-800.
-
(2008)
Cell
, vol.133
, pp. 789-800
-
-
Fan, L.1
Fuss, J.O.2
Cheng, Q.J.3
Arvai, A.S.4
Hammel, M.5
Roberts, V.A.6
Cooper, P.K.7
Tainer, J.A.8
-
14
-
-
84879797817
-
The wonders of flap endonucleases: structure, function, mechanism and regulation
-
Finger L.D., Atack J.M., Tsutakawa S., Classen S., Tainer J., Grasby J., Shen B. The wonders of flap endonucleases: structure, function, mechanism and regulation. Subcell Biochem. 2012, 62:301-326.
-
(2012)
Subcell Biochem.
, vol.62
, pp. 301-326
-
-
Finger, L.D.1
Atack, J.M.2
Tsutakawa, S.3
Classen, S.4
Tainer, J.5
Grasby, J.6
Shen, B.7
-
15
-
-
84856699863
-
Unpairing and gating: sequence-independent substrate recognition by FEN superfamily nucleases
-
Grasby J.A., Finger L.D., Tsutakawa S.E., Atack J.M., Tainer J.A. Unpairing and gating: sequence-independent substrate recognition by FEN superfamily nucleases. Trends Biochem. Sci. 2012, 37:74-84.
-
(2012)
Trends Biochem. Sci.
, vol.37
, pp. 74-84
-
-
Grasby, J.A.1
Finger, L.D.2
Tsutakawa, S.E.3
Atack, J.M.4
Tainer, J.A.5
-
16
-
-
79953894934
-
Human flap endonuclease structures, DNA double-base flipping, and a unified understanding of the FEN1 superfamily
-
Tsutakawa S.E., Classen S., Chapados B.R., Arvai A.S., Finger L.D., Guenther G., Tomlinson C.G., Thompson P., Sarker A.H., Shen B., Cooper P.K., Grasby J.A., Tainer J.A. Human flap endonuclease structures, DNA double-base flipping, and a unified understanding of the FEN1 superfamily. Cell 2011, 145:198-211.
-
(2011)
Cell
, vol.145
, pp. 198-211
-
-
Tsutakawa, S.E.1
Classen, S.2
Chapados, B.R.3
Arvai, A.S.4
Finger, L.D.5
Guenther, G.6
Tomlinson, C.G.7
Thompson, P.8
Sarker, A.H.9
Shen, B.10
Cooper, P.K.11
Grasby, J.A.12
Tainer, J.A.13
-
17
-
-
84860722082
-
Double strand binding-single strand incision mechanism for human flap endonuclease: implications for the superfamily
-
Tsutakawa S.E., Tainer J.A. Double strand binding-single strand incision mechanism for human flap endonuclease: implications for the superfamily. Mech. Ageing Dev. 2012, 133:195-202.
-
(2012)
Mech. Ageing Dev.
, vol.133
, pp. 195-202
-
-
Tsutakawa, S.E.1
Tainer, J.A.2
-
18
-
-
84889004332
-
DNA sequences that interfere with transcription: implications for genome function and stability
-
Belotserkovskii B.P., Mirkin S.M., Hanawalt P.C. DNA sequences that interfere with transcription: implications for genome function and stability. Chem. Rev. 2013, 113:8620-8637.
-
(2013)
Chem. Rev.
, vol.113
, pp. 8620-8637
-
-
Belotserkovskii, B.P.1
Mirkin, S.M.2
Hanawalt, P.C.3
-
19
-
-
77955095659
-
Human AP endonuclease 1 (APE1): from mechanistic insights to druggable target in cancer
-
Abbotts R., Madhusudan S. Human AP endonuclease 1 (APE1): from mechanistic insights to druggable target in cancer. Cancer Treat. Rev. 2010, 36:425-435.
-
(2010)
Cancer Treat. Rev.
, vol.36
, pp. 425-435
-
-
Abbotts, R.1
Madhusudan, S.2
-
20
-
-
33847613569
-
Oxidative DNA damage repair in mammalian cells: a new perspective
-
Hazra T.K., Das A., Das S., Choudhury S., Kow Y.W., Roy R. Oxidative DNA damage repair in mammalian cells: a new perspective. DNA Repair 2007, 6:470-480.
-
(2007)
DNA Repair
, vol.6
, pp. 470-480
-
-
Hazra, T.K.1
Das, A.2
Das, S.3
Choudhury, S.4
Kow, Y.W.5
Roy, R.6
-
21
-
-
38049112778
-
Early steps in the DNA base excision/single-strand interruption repair pathway in mammalian cells
-
Hegde M.L., Hazra T.K., Mitra S. Early steps in the DNA base excision/single-strand interruption repair pathway in mammalian cells. Cell Res. 2008, 18:27-47.
-
(2008)
Cell Res.
, vol.18
, pp. 27-47
-
-
Hegde, M.L.1
Hazra, T.K.2
Mitra, S.3
-
22
-
-
17644365775
-
Two essential but distinct functions of the mammalian abasic endonuclease
-
Izumi T., Brown D.B., Naidu C.V., Bhakat K.K., Macinnes M.A., Saito H., Chen D.J., Mitra S. Two essential but distinct functions of the mammalian abasic endonuclease. Proc. Nat. Acad. Sci. U.S.A. 2005, 102:5739-5743.
-
(2005)
Proc. Nat. Acad. Sci. U.S.A.
, vol.102
, pp. 5739-5743
-
-
Izumi, T.1
Brown, D.B.2
Naidu, C.V.3
Bhakat, K.K.4
Macinnes, M.A.5
Saito, H.6
Chen, D.J.7
Mitra, S.8
-
23
-
-
84892927300
-
Human apurinic/apyrimidinic endonuclease 1
-
Li M., Wilson D.M. Human apurinic/apyrimidinic endonuclease 1. Antioxid. Redox Signaling 2013, 20:678-707.
-
(2013)
Antioxid. Redox Signaling
, vol.20
, pp. 678-707
-
-
Li, M.1
Wilson, D.M.2
-
24
-
-
33847673237
-
The intricate structural chemistry of base excision repair machinery: implications for DNA damage recognition, removal, and repair
-
Hitomi K., Iwai S., Tainer J.A. The intricate structural chemistry of base excision repair machinery: implications for DNA damage recognition, removal, and repair. DNA Repair 2007, 6:410-428.
-
(2007)
DNA Repair
, vol.6
, pp. 410-428
-
-
Hitomi, K.1
Iwai, S.2
Tainer, J.A.3
-
25
-
-
0015504248
-
Rate of depurination of native deoxyribonucleic acid
-
Lindahl T., Nyberg B. Rate of depurination of native deoxyribonucleic acid. Biochemistry 1972, 11:3610-3618.
-
(1972)
Biochemistry
, vol.11
, pp. 3610-3618
-
-
Lindahl, T.1
Nyberg, B.2
-
26
-
-
0029829265
-
The redox/DNA repair protein, Ref-1, is essential for early embryonic development in mice
-
Xanthoudakis S., Smeyne R.J., Wallace J.D., Curran T. The redox/DNA repair protein, Ref-1, is essential for early embryonic development in mice. Proc. Nat. Acad. Sci. U.S.A. 1996, 93:8919-8923.
-
(1996)
Proc. Nat. Acad. Sci. U.S.A.
, vol.93
, pp. 8919-8923
-
-
Xanthoudakis, S.1
Smeyne, R.J.2
Wallace, J.D.3
Curran, T.4
-
27
-
-
0031720426
-
A murine AP-endonuclease gene-targeted deficiency with post-implantation embryonic progression and ionizing radiation sensitivity
-
Ludwig D.L., MacInnes M.A., Takiguchi Y., Purtymun P.E., Henrie M., Flannery M., Meneses J., Pedersen R.A., Chen D.J. A murine AP-endonuclease gene-targeted deficiency with post-implantation embryonic progression and ionizing radiation sensitivity. Mutat. Res. 1998, 409:17-29.
-
(1998)
Mutat. Res.
, vol.409
, pp. 17-29
-
-
Ludwig, D.L.1
MacInnes, M.A.2
Takiguchi, Y.3
Purtymun, P.E.4
Henrie, M.5
Flannery, M.6
Meneses, J.7
Pedersen, R.A.8
Chen, D.J.9
-
28
-
-
0035879043
-
Heterozygosity for the mouse Apex gene results in phenotypes associated with oxidative stress
-
Meira L.B., Devaraj S., Kisby G.E., Burns D.K., Daniel R.L., Hammer R.E., Grundy S., Jialal I., Friedberg E.C. Heterozygosity for the mouse Apex gene results in phenotypes associated with oxidative stress. Cancer Res. 2001, 61:5552-5557.
-
(2001)
Cancer Res.
, vol.61
, pp. 5552-5557
-
-
Meira, L.B.1
Devaraj, S.2
Kisby, G.E.3
Burns, D.K.4
Daniel, R.L.5
Hammer, R.E.6
Grundy, S.7
Jialal, I.8
Friedberg, E.C.9
-
29
-
-
0034668113
-
Functional characterization of Ape1 variants identified in the human population
-
Hadi M.Z., Coleman M.A., Fidelis K., Mohrenweiser H.W., Wilson D.M. Functional characterization of Ape1 variants identified in the human population. Nucleic Acids Res. 2000, 28:3871-3879.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 3871-3879
-
-
Hadi, M.Z.1
Coleman, M.A.2
Fidelis, K.3
Mohrenweiser, H.W.4
Wilson, D.M.5
-
30
-
-
0030916372
-
Evidence of reduced DNA repair in amyotrophic lateral sclerosis brain tissue
-
Kisby G.E., Milne J., Sweatt C. Evidence of reduced DNA repair in amyotrophic lateral sclerosis brain tissue. Neuroreport 1997, 8:1337-1340.
-
(1997)
Neuroreport
, vol.8
, pp. 1337-1340
-
-
Kisby, G.E.1
Milne, J.2
Sweatt, C.3
-
31
-
-
0035130776
-
Common polymorphisms and somatic mutations in human base excision repair genes in ovarian and endometrial cancers
-
Pieretti M., Khattar N.H., Smith S.A. Common polymorphisms and somatic mutations in human base excision repair genes in ovarian and endometrial cancers. Mutat. Res. 2001, 432:53-59.
-
(2001)
Mutat. Res.
, vol.432
, pp. 53-59
-
-
Pieretti, M.1
Khattar, N.H.2
Smith, S.A.3
-
32
-
-
78149466586
-
Small molecule inhibitors of DNA repair nuclease activities of APE1
-
Wilson D.M., Simeonov A. Small molecule inhibitors of DNA repair nuclease activities of APE1. Cell. Mol. Life Sci.: CMLS 2010, 67:3621-3631.
-
(2010)
Cell. Mol. Life Sci.: CMLS
, vol.67
, pp. 3621-3631
-
-
Wilson, D.M.1
Simeonov, A.2
-
33
-
-
34548276529
-
The DNA base excision repair protein Ape1/Ref-1 as a therapeutic and chemopreventive target
-
Fishel M.L., Kelley M.R. The DNA base excision repair protein Ape1/Ref-1 as a therapeutic and chemopreventive target. Mol. Aspects Med. 2007, 28:375-395.
-
(2007)
Mol. Aspects Med.
, vol.28
, pp. 375-395
-
-
Fishel, M.L.1
Kelley, M.R.2
-
34
-
-
78149471195
-
Understanding different functions of mammalian AP endonuclease (APE1) as a promising tool for cancer treatment
-
Tell G., Fantini D., Quadrifoglio F. Understanding different functions of mammalian AP endonuclease (APE1) as a promising tool for cancer treatment. Cell. Mol. Life Sci.: CMLS 2010, 67:3589-3608.
-
(2010)
Cell. Mol. Life Sci.: CMLS
, vol.67
, pp. 3589-3608
-
-
Tell, G.1
Fantini, D.2
Quadrifoglio, F.3
-
35
-
-
70350503915
-
Coordination between polymerase beta and FEN1 can modulate CAG repeat expansion
-
Liu Y., Prasad R., Beard W.A., Hou E.W., Horton J.K., McMurray C.T., Wilson S.H. Coordination between polymerase beta and FEN1 can modulate CAG repeat expansion. J. Biol. Chem. 2009, 284:28352-28366.
-
(2009)
J. Biol. Chem.
, vol.284
, pp. 28352-28366
-
-
Liu, Y.1
Prasad, R.2
Beard, W.A.3
Hou, E.W.4
Horton, J.K.5
McMurray, C.T.6
Wilson, S.H.7
-
36
-
-
0042470700
-
Nuclease-deficient FEN-1 blocks Rad51/BRCA1-mediated repair and causes trinucleotide repeat instability
-
Spiro C., McMurray C.T. Nuclease-deficient FEN-1 blocks Rad51/BRCA1-mediated repair and causes trinucleotide repeat instability. Mol. Cell Biol. 2003, 23:6063-6074.
-
(2003)
Mol. Cell Biol.
, vol.23
, pp. 6063-6074
-
-
Spiro, C.1
McMurray, C.T.2
-
37
-
-
0032488872
-
Expansion and length-dependent fragility of CTG repeats in yeast
-
Freudenreich C.H., Kantrow S.M., Zakian V.A. Expansion and length-dependent fragility of CTG repeats in yeast. Science 1998, 279:853-856.
-
(1998)
Science
, vol.279
, pp. 853-856
-
-
Freudenreich, C.H.1
Kantrow, S.M.2
Zakian, V.A.3
-
38
-
-
0037162498
-
Haploinsufficiency of Flap endonuclease (Fen1) leads to rapid tumor progression
-
Kucherlapati M., Yang K., Kuraguchi M., Zhao J., Lia M., Heyer J., Kane M.F., Fan K., Russell R., Brown A.M., Kneitz B., Edelmann W., Kolodner R.D., Lipkin M., Kucherlapati R. Haploinsufficiency of Flap endonuclease (Fen1) leads to rapid tumor progression. Proc. Nat. Acad. Sci. U.S.A. 2002, 99:9924-9929.
-
(2002)
Proc. Nat. Acad. Sci. U.S.A.
, vol.99
, pp. 9924-9929
-
-
Kucherlapati, M.1
Yang, K.2
Kuraguchi, M.3
Zhao, J.4
Lia, M.5
Heyer, J.6
Kane, M.F.7
Fan, K.8
Russell, R.9
Brown, A.M.10
Kneitz, B.11
Edelmann, W.12
Kolodner, R.D.13
Lipkin, M.14
Kucherlapati, R.15
-
41
-
-
84855378612
-
Functional FEN1 genetic variants contribute to risk of hepatocellular carcinoma, esophageal cancer, gastric cancer and colorectal cancer
-
Liu L., Zhou C., Zhou L., Peng L., Li D., Zhang X., Zhou M., Kuang P., Yuan Q., Song X., Yang M. Functional FEN1 genetic variants contribute to risk of hepatocellular carcinoma, esophageal cancer, gastric cancer and colorectal cancer. Carcinogenesis 2012, 33:119-123.
-
(2012)
Carcinogenesis
, vol.33
, pp. 119-123
-
-
Liu, L.1
Zhou, C.2
Zhou, L.3
Peng, L.4
Li, D.5
Zhang, X.6
Zhou, M.7
Kuang, P.8
Yuan, Q.9
Song, X.10
Yang, M.11
-
42
-
-
69549123990
-
Functional FEN1 polymorphisms are associated with DNA damage levels and lung cancer risk
-
Yang M., Guo H., Wu C., He Y., Yu D., Zhou L., Wang F., Xu J., Tan W., Wang G., Shen B., Yuan J., Wu T., Lin D. Functional FEN1 polymorphisms are associated with DNA damage levels and lung cancer risk. Hum. Mutat. 2009, 30:1320-1328.
-
(2009)
Hum. Mutat.
, vol.30
, pp. 1320-1328
-
-
Yang, M.1
Guo, H.2
Wu, C.3
He, Y.4
Yu, D.5
Zhou, L.6
Wang, F.7
Xu, J.8
Tan, W.9
Wang, G.10
Shen, B.11
Yuan, J.12
Wu, T.13
Lin, D.14
-
43
-
-
84884720161
-
Mutational analysis of FEN1 Gene in hepatocellular carcinomas
-
Kim C.J., Shin J.W., Jung S.W., Park B.R., Cha H.J., Park N.H. Mutational analysis of FEN1 Gene in hepatocellular carcinomas. Apmis 2013.
-
(2013)
Apmis
-
-
Kim, C.J.1
Shin, J.W.2
Jung, S.W.3
Park, B.R.4
Cha, H.J.5
Park, N.H.6
-
44
-
-
79960139957
-
Fen1 mutations that specifically disrupt its interaction with PCNA cause aneuploidy-associated cancer
-
Zheng L., Dai H., Hegde M.L., Zhou M., Guo Z., Wu X., Wu J., Su L., Zhong X., Mitra S., Huang Q., Kernstine K.H., Pfeifer G.P., Shen B. Fen1 mutations that specifically disrupt its interaction with PCNA cause aneuploidy-associated cancer. Cell Res. 2011, 21:1052-1067.
-
(2011)
Cell Res.
, vol.21
, pp. 1052-1067
-
-
Zheng, L.1
Dai, H.2
Hegde, M.L.3
Zhou, M.4
Guo, Z.5
Wu, X.6
Wu, J.7
Su, L.8
Zhong, X.9
Mitra, S.10
Huang, Q.11
Kernstine, K.H.12
Pfeifer, G.P.13
Shen, B.14
-
45
-
-
34447132813
-
Fen1 mutations result in autoimmunity, chronic inflammation and cancers
-
Zheng L., Dai H., Zhou M., Li M., Singh P., Qiu J., Tsark W., Huang Q., Kernstine K., Zhang X., Lin D., Shen B. Fen1 mutations result in autoimmunity, chronic inflammation and cancers. Nat. Med. 2007, 13:812-819.
-
(2007)
Nat. Med.
, vol.13
, pp. 812-819
-
-
Zheng, L.1
Dai, H.2
Zhou, M.3
Li, M.4
Singh, P.5
Qiu, J.6
Tsark, W.7
Huang, Q.8
Kernstine, K.9
Zhang, X.10
Lin, D.11
Shen, B.12
-
46
-
-
0034678917
-
Gene expression of flap endonuclease-1 during cell proliferation and differentiation
-
Kim I.S., Lee M.Y., Lee I.H., Shin S.L., Lee S.Y. Gene expression of flap endonuclease-1 during cell proliferation and differentiation. Biochim. Biophys. Acta 2000, 1496:333-340.
-
(2000)
Biochim. Biophys. Acta
, vol.1496
, pp. 333-340
-
-
Kim, I.S.1
Lee, M.Y.2
Lee, I.H.3
Shin, S.L.4
Lee, S.Y.5
-
47
-
-
0031788197
-
Fen1 expression: a novel marker for cell proliferation
-
Warbrick E., Coates P.J., Hall P.A. Fen1 expression: a novel marker for cell proliferation. J. Pathol. 1998, 186:319-324.
-
(1998)
J. Pathol.
, vol.186
, pp. 319-324
-
-
Warbrick, E.1
Coates, P.J.2
Hall, P.A.3
-
48
-
-
69249161787
-
FEN1 is overexpressed in testis, lung and brain tumors
-
Nikolova T., Christmann M., Kaina B. FEN1 is overexpressed in testis, lung and brain tumors. Anticancer Res. 2009, 29:2453-2459.
-
(2009)
Anticancer Res.
, vol.29
, pp. 2453-2459
-
-
Nikolova, T.1
Christmann, M.2
Kaina, B.3
-
49
-
-
0242551649
-
Increased expression and no mutation of the Flap endonuclease (FEN1) gene in human lung cancer
-
Sato M., Girard L., Sekine I., Sunaga N., Ramirez R.D., Kamibayashi C., Minna J.D. Increased expression and no mutation of the Flap endonuclease (FEN1) gene in human lung cancer. Oncogene 2003, 22:7243-7246.
-
(2003)
Oncogene
, vol.22
, pp. 7243-7246
-
-
Sato, M.1
Girard, L.2
Sekine, I.3
Sunaga, N.4
Ramirez, R.D.5
Kamibayashi, C.6
Minna, J.D.7
-
50
-
-
56449116122
-
Overexpression and hypomethylation of flap endonuclease 1 gene in breast and other cancers
-
Singh P., Yang M., Dai H., Yu D., Huang Q., Tan W., Kernstine K.H., Lin D., Shen B. Overexpression and hypomethylation of flap endonuclease 1 gene in breast and other cancers. Mol. Cancer Res. 2008, 6:1710-1717.
-
(2008)
Mol. Cancer Res.
, vol.6
, pp. 1710-1717
-
-
Singh, P.1
Yang, M.2
Dai, H.3
Yu, D.4
Huang, Q.5
Tan, W.6
Kernstine, K.H.7
Lin, D.8
Shen, B.9
-
51
-
-
9144241047
-
Highly expressed genes in pancreatic ductal adenocarcinomas: a comprehensive characterization and comparison of the transcription profiles obtained from three major technologies
-
Iacobuzio-Donahue C.A., Ashfaq R., Maitra A., Adsay N.V., Shen-Ong G.L., Berg K., Hollingsworth M.A., Cameron J.L., Yeo C.J., Kern S.E., Goggins M., Hruban R.H. Highly expressed genes in pancreatic ductal adenocarcinomas: a comprehensive characterization and comparison of the transcription profiles obtained from three major technologies. Cancer Res. 2003, 63:8614-8622.
-
(2003)
Cancer Res.
, vol.63
, pp. 8614-8622
-
-
Iacobuzio-Donahue, C.A.1
Ashfaq, R.2
Maitra, A.3
Adsay, N.V.4
Shen-Ong, G.L.5
Berg, K.6
Hollingsworth, M.A.7
Cameron, J.L.8
Yeo, C.J.9
Kern, S.E.10
Goggins, M.11
Hruban, R.H.12
-
52
-
-
19944425959
-
Identification of gastric cancer-related genes using a cDNA microarray containing novel expressed sequence tags expressed in gastric cancer cells
-
Kim J.M., Sohn H.Y., Yoon S.Y., Oh J.H., Yang J.O., Kim J.H., Song K.S., Rho S.M., Yoo H.S., Kim Y.S., Kim J.G., Kim N.S. Identification of gastric cancer-related genes using a cDNA microarray containing novel expressed sequence tags expressed in gastric cancer cells. Clin. Cancer Res. 2005, 11:473-482.
-
(2005)
Clin. Cancer Res.
, vol.11
, pp. 473-482
-
-
Kim, J.M.1
Sohn, H.Y.2
Yoon, S.Y.3
Oh, J.H.4
Yang, J.O.5
Kim, J.H.6
Song, K.S.7
Rho, S.M.8
Yoo, H.S.9
Kim, Y.S.10
Kim, J.G.11
Kim, N.S.12
-
53
-
-
84872547120
-
Drugging topoisomerases: lessons and challenges
-
Pommier Y. Drugging topoisomerases: lessons and challenges. ACS Chem. Biol. 2013, 8:82-95.
-
(2013)
ACS Chem. Biol.
, vol.8
, pp. 82-95
-
-
Pommier, Y.1
-
54
-
-
84865975568
-
An RNA virus hijacks an incognito function of a DNA repair enzyme
-
Virgen-Slane R., Rozovics J.M., Fitzgerald K.D., Ngo T., Chou W., van der Heden van Noort G.J., Filippov D.V., Gershon P.D., Semler B.L. An RNA virus hijacks an incognito function of a DNA repair enzyme. Proc. Nat. Acad. Sci. U.S.A. 2012, 109:14634-14639.
-
(2012)
Proc. Nat. Acad. Sci. U.S.A.
, vol.109
, pp. 14634-14639
-
-
Virgen-Slane, R.1
Rozovics, J.M.2
Fitzgerald, K.D.3
Ngo, T.4
Chou, W.5
van der Heden van Noort, G.J.6
Filippov, D.V.7
Gershon, P.D.8
Semler, B.L.9
-
55
-
-
33645212804
-
The time required for water attack at the phosphorus atom of simple phosphodiesters and of DNA
-
Schroeder G.K., Lad C., Wyman P., Williams N.H., Wolfenden R. The time required for water attack at the phosphorus atom of simple phosphodiesters and of DNA. Proc. Nat. Acad. Sci. U.S.A. 2006, 103:4052-4055.
-
(2006)
Proc. Nat. Acad. Sci. U.S.A.
, vol.103
, pp. 4052-4055
-
-
Schroeder, G.K.1
Lad, C.2
Wyman, P.3
Williams, N.H.4
Wolfenden, R.5
-
56
-
-
69249114613
-
The 3'-flap pocket of human flap endonuclease 1 is critical for substrate binding and catalysis
-
Finger L.D., Blanchard M.S., Theimer C.A., Sengerova B., Singh P., Chavez V., Liu F., Grasby J.A., Shen B. The 3'-flap pocket of human flap endonuclease 1 is critical for substrate binding and catalysis. J. Biol. Chem. 2009, 284:22184-22194.
-
(2009)
J. Biol. Chem.
, vol.284
, pp. 22184-22194
-
-
Finger, L.D.1
Blanchard, M.S.2
Theimer, C.A.3
Sengerova, B.4
Singh, P.5
Chavez, V.6
Liu, F.7
Grasby, J.A.8
Shen, B.9
-
57
-
-
84875412272
-
Conserved structural chemistry for incision activity in structurally non-homologous apurinic/apyrimidinic endonuclease APE1 and endonuclease IV DNA repair enzymes
-
Tsutakawa S.E., Shin D.S., Mol C.D., Izumi T., Arvai A.S., Mantha A.K., Szczesny B., Ivanov I.N., Hosfield D.J., Maiti B., Pique M.E., Frankel K.A., Hitomi K., Cunningham R.P., Mitra S., Tainer J.A. Conserved structural chemistry for incision activity in structurally non-homologous apurinic/apyrimidinic endonuclease APE1 and endonuclease IV DNA repair enzymes. J. Biol. Chem. 2013, 288:8445-8455.
-
(2013)
J. Biol. Chem.
, vol.288
, pp. 8445-8455
-
-
Tsutakawa, S.E.1
Shin, D.S.2
Mol, C.D.3
Izumi, T.4
Arvai, A.S.5
Mantha, A.K.6
Szczesny, B.7
Ivanov, I.N.8
Hosfield, D.J.9
Maiti, B.10
Pique, M.E.11
Frankel, K.A.12
Hitomi, K.13
Cunningham, R.P.14
Mitra, S.15
Tainer, J.A.16
-
58
-
-
0034734377
-
Abasic site recognition by two apurinic/apyrimidinic endonuclease families in DNA base excision repair: the 3' ends justify the means
-
Mol C.D., Hosfield D.J., Tainer J.A. Abasic site recognition by two apurinic/apyrimidinic endonuclease families in DNA base excision repair: the 3' ends justify the means. Mutat. Res. 2000, 460:211-229.
-
(2000)
Mutat. Res.
, vol.460
, pp. 211-229
-
-
Mol, C.D.1
Hosfield, D.J.2
Tainer, J.A.3
-
59
-
-
79951678159
-
Nucleases: diversity of structure, function and mechanism
-
Yang W. Nucleases: diversity of structure, function and mechanism. Q. Rev. Biophys. 2011, 44:1-93.
-
(2011)
Q. Rev. Biophys.
, vol.44
, pp. 1-93
-
-
Yang, W.1
-
60
-
-
43049110531
-
Roles of metal ions in nucleases
-
Dupureur C.M. Roles of metal ions in nucleases. Curr. Opin. Chem. Biol. 2008, 12:250-255.
-
(2008)
Curr. Opin. Chem. Biol.
, vol.12
, pp. 250-255
-
-
Dupureur, C.M.1
-
61
-
-
0034437606
-
New recognition mode for a TG mismatch: the atomic structure of a very short patch repair endonuclease-DNA complex
-
Tsutakawa S.E., Morikawa K. New recognition mode for a TG mismatch: the atomic structure of a very short patch repair endonuclease-DNA complex. Cold Spring Harb. Symp. Quant. Biol. 2000, 65:233-239.
-
(2000)
Cold Spring Harb. Symp. Quant. Biol.
, vol.65
, pp. 233-239
-
-
Tsutakawa, S.E.1
Morikawa, K.2
-
62
-
-
43249130475
-
DNA apurinic-apyrimidinic site binding and excision by endonuclease IV
-
Garcin E.D., Hosfield D.J., Desai S.A., Haas B.J., Bjoras M., Cunningham R.P., Tainer J.A. DNA apurinic-apyrimidinic site binding and excision by endonuclease IV. Nat. Struct. Mol. Biol. 2008, 15:515-522.
-
(2008)
Nat. Struct. Mol. Biol.
, vol.15
, pp. 515-522
-
-
Garcin, E.D.1
Hosfield, D.J.2
Desai, S.A.3
Haas, B.J.4
Bjoras, M.5
Cunningham, R.P.6
Tainer, J.A.7
-
63
-
-
0033529716
-
Structure of the DNA repair enzyme endonuclease IV and its DNA complex: double-nucleotide flipping at abasic sites and three-metal-ion catalysis
-
Hosfield D.J., Guan Y., Haas B.J., Cunningham R.P., Tainer J.A. Structure of the DNA repair enzyme endonuclease IV and its DNA complex: double-nucleotide flipping at abasic sites and three-metal-ion catalysis. Cell 1999, 98:397-408.
-
(1999)
Cell
, vol.98
, pp. 397-408
-
-
Hosfield, D.J.1
Guan, Y.2
Haas, B.J.3
Cunningham, R.P.4
Tainer, J.A.5
-
64
-
-
33846799362
-
Unraveling the three-metal-ion catalytic mechanism of the DNA repair enzyme endonuclease IV
-
Ivanov I., Tainer J.A., McCammon J.A. Unraveling the three-metal-ion catalytic mechanism of the DNA repair enzyme endonuclease IV. Proc. Nat. Acad. Sci. U.S.A. 2007, 104:1465-1470.
-
(2007)
Proc. Nat. Acad. Sci. U.S.A.
, vol.104
, pp. 1465-1470
-
-
Ivanov, I.1
Tainer, J.A.2
McCammon, J.A.3
-
65
-
-
0037034035
-
An exonucleolytic activity of human apurinic/apyrimidinic endonuclease on 3' mispaired DNA
-
Chou K.M., Cheng Y.C. An exonucleolytic activity of human apurinic/apyrimidinic endonuclease on 3' mispaired DNA. Nature 2002, 415:655-659.
-
(2002)
Nature
, vol.415
, pp. 655-659
-
-
Chou, K.M.1
Cheng, Y.C.2
-
66
-
-
0345305364
-
Characterisation of new substrate specificities of Escherichia coli and Saccharomyces cerevisiae AP endonucleases
-
Ishchenko A.A., Sanz G., Privezentzev C.V., Maksimenko A.V., Saparbaev M. Characterisation of new substrate specificities of Escherichia coli and Saccharomyces cerevisiae AP endonucleases. Nucleic Acids Res. 2003, 31:6344-6353.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 6344-6353
-
-
Ishchenko, A.A.1
Sanz, G.2
Privezentzev, C.V.3
Maksimenko, A.V.4
Saparbaev, M.5
-
67
-
-
22544450152
-
The 3'->5' exonuclease of Apn1 provides an alternative pathway to repair 7,8-dihydro-8-oxodeoxyguanosine in Saccharomyces cerevisiae
-
Ishchenko A.A., Yang X., Ramotar D., Saparbaev M. The 3'->5' exonuclease of Apn1 provides an alternative pathway to repair 7,8-dihydro-8-oxodeoxyguanosine in Saccharomyces cerevisiae. Mol. Cell Biol. 2005, 25:6380-6390.
-
(2005)
Mol. Cell Biol.
, vol.25
, pp. 6380-6390
-
-
Ishchenko, A.A.1
Yang, X.2
Ramotar, D.3
Saparbaev, M.4
-
68
-
-
0037049975
-
Alternative nucleotide incision repair pathway for oxidative DNA damage
-
Ischenko A.A., Saparbaev M.K. Alternative nucleotide incision repair pathway for oxidative DNA damage. Nature 2002, 415:183-187.
-
(2002)
Nature
, vol.415
, pp. 183-187
-
-
Ischenko, A.A.1
Saparbaev, M.K.2
-
69
-
-
0037474210
-
Characterization of an endonuclease IV 3'-5' exonuclease activity
-
Kerins S.M., Collins R., McCarthy T.V. Characterization of an endonuclease IV 3'-5' exonuclease activity. J. Biol. Chem. 2003, 278:3048-3054.
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 3048-3054
-
-
Kerins, S.M.1
Collins, R.2
McCarthy, T.V.3
-
71
-
-
63049121360
-
APE1/Ref-1 interacts with NPM1 within nucleoli and plays a role in the rRNA quality control process
-
Vascotto C., Fantini D., Romanello M., Cesaratto L., Deganuto M., Leonardi A., Radicella J.P., Kelley M.R., D'Ambrosio C., Scaloni A., Quadrifoglio F., Tell G. APE1/Ref-1 interacts with NPM1 within nucleoli and plays a role in the rRNA quality control process. Mol. Cell. Biol. 2009, 29:1834-1854.
-
(2009)
Mol. Cell. Biol.
, vol.29
, pp. 1834-1854
-
-
Vascotto, C.1
Fantini, D.2
Romanello, M.3
Cesaratto, L.4
Deganuto, M.5
Leonardi, A.6
Radicella, J.P.7
Kelley, M.R.8
D'Ambrosio, C.9
Scaloni, A.10
Quadrifoglio, F.11
Tell, G.12
-
72
-
-
43049167396
-
Characterization of abasic endonuclease activity of human Ape1 on alternative substrates, as well as effects of ATP and sequence context on AP site incision
-
Berquist B.R., McNeill D.R., Wilson D.M. Characterization of abasic endonuclease activity of human Ape1 on alternative substrates, as well as effects of ATP and sequence context on AP site incision. J. Mol. Biol. 2008, 379:17-27.
-
(2008)
J. Mol. Biol.
, vol.379
, pp. 17-27
-
-
Berquist, B.R.1
McNeill, D.R.2
Wilson, D.M.3
-
73
-
-
0028923440
-
Structure and function of the multifunctional DNA-repair enzyme exonuclease III
-
Mol C.D., Kuo C.F., Thayer M.M., Cunningham R.P., Tainer J.A. Structure and function of the multifunctional DNA-repair enzyme exonuclease III. Nature 1995, 374:381-386.
-
(1995)
Nature
, vol.374
, pp. 381-386
-
-
Mol, C.D.1
Kuo, C.F.2
Thayer, M.M.3
Cunningham, R.P.4
Tainer, J.A.5
-
74
-
-
0032167424
-
Base excision repair initiation revealed by crystal structures and binding kinetics of human uracil-DNA glycosylase with DNA
-
Parikh S.S., Mol C.D., Slupphaug G., Bharati S., Krokan H.E., Tainer J.A. Base excision repair initiation revealed by crystal structures and binding kinetics of human uracil-DNA glycosylase with DNA. EMBO J. 1998, 17:5214-5226.
-
(1998)
EMBO J.
, vol.17
, pp. 5214-5226
-
-
Parikh, S.S.1
Mol, C.D.2
Slupphaug, G.3
Bharati, S.4
Krokan, H.E.5
Tainer, J.A.6
-
75
-
-
0034719372
-
DNA-bound structures and mutants reveal abasic DNA binding by APE1 and DNA repair coordination
-
Mol C.D., Izumi T., Mitra S., Tainer J.A. DNA-bound structures and mutants reveal abasic DNA binding by APE1 and DNA repair coordination. Nature 2000, 403:451-456.
-
(2000)
Nature
, vol.403
, pp. 451-456
-
-
Mol, C.D.1
Izumi, T.2
Mitra, S.3
Tainer, J.A.4
-
76
-
-
84882355071
-
Insight into mechanisms of 3'-5' exonuclease activity and removal of bulky 8,5'-cyclopurine adducts by apurinic/apyrimidinic endonucleases
-
Mazouzi A., Vigouroux A., Aikeshev B., Brooks P.J., Saparbaev M.K., Morera S., Ishchenko A.A. Insight into mechanisms of 3'-5' exonuclease activity and removal of bulky 8,5'-cyclopurine adducts by apurinic/apyrimidinic endonucleases. Proc. Nat. Acad. Sci. U.S.A. 2013, 110:E3071-E3080.
-
(2013)
Proc. Nat. Acad. Sci. U.S.A.
, vol.110
-
-
Mazouzi, A.1
Vigouroux, A.2
Aikeshev, B.3
Brooks, P.J.4
Saparbaev, M.K.5
Morera, S.6
Ishchenko, A.A.7
-
77
-
-
84870831603
-
Mechanism of repair of 5'-topoisomerase II-DNA adducts by mammalian tyrosyl-DNA phosphodiesterase 2
-
Schellenberg M.J., Appel C.D., Adhikari S., Robertson P.D., Ramsden D.A., Williams R.S. Mechanism of repair of 5'-topoisomerase II-DNA adducts by mammalian tyrosyl-DNA phosphodiesterase 2. Nat. Struct. Mol. Biol. 2012, 19:1363-1371.
-
(2012)
Nat. Struct. Mol. Biol.
, vol.19
, pp. 1363-1371
-
-
Schellenberg, M.J.1
Appel, C.D.2
Adhikari, S.3
Robertson, P.D.4
Ramsden, D.A.5
Williams, R.S.6
-
78
-
-
84870837982
-
Structural basis for recognition of 5'-phosphotyrosine adducts by Tdp2
-
Shi K., Kurahashi K., Gao R., Tsutakawa S.E., Tainer J.A., Pommier Y., Aihara H. Structural basis for recognition of 5'-phosphotyrosine adducts by Tdp2. Nat. Struct. Mol. Biol. 2012, 19:1372-1377.
-
(2012)
Nat. Struct. Mol. Biol.
, vol.19
, pp. 1372-1377
-
-
Shi, K.1
Kurahashi, K.2
Gao, R.3
Tsutakawa, S.E.4
Tainer, J.A.5
Pommier, Y.6
Aihara, H.7
-
79
-
-
0033605817
-
Protein mimicry of DNA from crystal structures of the uracil-DNA glycosylase inhibitor protein and its complex with Escherichia coli uracil-DNA glycosylase
-
Putnam C.D., Shroyer M.J., Lundquist A.J., Mol C.D., Arvai A.S., Mosbaugh D.W., Tainer J.A. Protein mimicry of DNA from crystal structures of the uracil-DNA glycosylase inhibitor protein and its complex with Escherichia coli uracil-DNA glycosylase. J. Mol. Biol. 1999, 287:331-346.
-
(1999)
J. Mol. Biol.
, vol.287
, pp. 331-346
-
-
Putnam, C.D.1
Shroyer, M.J.2
Lundquist, A.J.3
Mol, C.D.4
Arvai, A.S.5
Mosbaugh, D.W.6
Tainer, J.A.7
-
80
-
-
27844526220
-
Protein mimicry of DNA and pathway regulation
-
Putnam C.D., Tainer J.A. Protein mimicry of DNA and pathway regulation. DNA Repair 2005, 4:1410-1420.
-
(2005)
DNA Repair
, vol.4
, pp. 1410-1420
-
-
Putnam, C.D.1
Tainer, J.A.2
-
81
-
-
84863393243
-
DNA sequence context conceals alpha-anomeric lesions
-
Johnson C.N., Spring A.M., Desai S., Cunningham R.P., Germann M.W. DNA sequence context conceals alpha-anomeric lesions. J. Mol. Biol. 2012, 416:425-437.
-
(2012)
J. Mol. Biol.
, vol.416
, pp. 425-437
-
-
Johnson, C.N.1
Spring, A.M.2
Desai, S.3
Cunningham, R.P.4
Germann, M.W.5
-
82
-
-
0028137259
-
A new ATP-independent DNA endonuclease from Schizosaccharomyces pombe that recognizes cyclobutane pyrimidine dimers and 6-4 photoproducts
-
Bowman K.K., Sidik K., Smith C.A., Taylor J.S., Doetsch P.W., Freyer G.A. A new ATP-independent DNA endonuclease from Schizosaccharomyces pombe that recognizes cyclobutane pyrimidine dimers and 6-4 photoproducts. Nucleic Acids Res. 1994, 22:3026-3032.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 3026-3032
-
-
Bowman, K.K.1
Sidik, K.2
Smith, C.A.3
Taylor, J.S.4
Doetsch, P.W.5
Freyer, G.A.6
-
83
-
-
0033151820
-
Substrate specificity of ultraviolet DNA endonuclease (UVDE/Uve1p) from Schizosaccharomyces pombe
-
Avery A.M., Kaur B., Taylor J.S., Mello J.A., Essigmann J.M., Doetsch P.W. Substrate specificity of ultraviolet DNA endonuclease (UVDE/Uve1p) from Schizosaccharomyces pombe. Nucleic Acids Res. 1999, 27:2256-2264.
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 2256-2264
-
-
Avery, A.M.1
Kaur, B.2
Taylor, J.S.3
Mello, J.A.4
Essigmann, J.M.5
Doetsch, P.W.6
-
84
-
-
35148856791
-
Crystal structure of the DNA repair enzyme ultraviolet damage endonuclease
-
Paspaleva K., Thomassen E., Pannu N.S., Iwai S., Moolenaar G.F., Goosen N., Abrahams J.P. Crystal structure of the DNA repair enzyme ultraviolet damage endonuclease. Structure 2007, 15:1316-1324.
-
(2007)
Structure
, vol.15
, pp. 1316-1324
-
-
Paspaleva, K.1
Thomassen, E.2
Pannu, N.S.3
Iwai, S.4
Moolenaar, G.F.5
Goosen, N.6
Abrahams, J.P.7
-
85
-
-
84875432306
-
UV damage endonuclease employs a novel dual-dinucleotide flipping mechanism to recognize different DNA lesions
-
Meulenbroek E.M., Peron Cane C., Jala I., Iwai S., Moolenaar G.F., Goosen N., Pannu N.S. UV damage endonuclease employs a novel dual-dinucleotide flipping mechanism to recognize different DNA lesions. Nucleic Acids Res. 2013, 41:1363-1371.
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. 1363-1371
-
-
Meulenbroek, E.M.1
Peron Cane, C.2
Jala, I.3
Iwai, S.4
Moolenaar, G.F.5
Goosen, N.6
Pannu, N.S.7
-
86
-
-
0033001622
-
Crystallographic and functional studies of very short patch repair endonuclease
-
Tsutakawa S.E., Muto T., Kawate T., Jingami H., Kunishima N., Ariyoshi M., Kohda D., Nakagawa M., Morikawa K. Crystallographic and functional studies of very short patch repair endonuclease. Mol. Cell 1999, 3:621-628.
-
(1999)
Mol. Cell
, vol.3
, pp. 621-628
-
-
Tsutakawa, S.E.1
Muto, T.2
Kawate, T.3
Jingami, H.4
Kunishima, N.5
Ariyoshi, M.6
Kohda, D.7
Nakagawa, M.8
Morikawa, K.9
-
87
-
-
0033544707
-
Recognition of a TG mismatch: the crystal structure of very short patch repair endonuclease in complex with a DNA duplex
-
Tsutakawa S.E., Jingami H., Morikawa K. Recognition of a TG mismatch: the crystal structure of very short patch repair endonuclease in complex with a DNA duplex. Cell 1999, 99:615-623.
-
(1999)
Cell
, vol.99
, pp. 615-623
-
-
Tsutakawa, S.E.1
Jingami, H.2
Morikawa, K.3
-
88
-
-
0023664744
-
The structure of guanosine-thymidine mismatches in B-DNA at 2.5-A resolution
-
Hunter W.N., Brown T., Kneale G., Anand N.N., Rabinovich D., Kennard O. The structure of guanosine-thymidine mismatches in B-DNA at 2.5-A resolution. J. Biol. Chem. 1987, 262:9962-9970.
-
(1987)
J. Biol. Chem.
, vol.262
, pp. 9962-9970
-
-
Hunter, W.N.1
Brown, T.2
Kneale, G.3
Anand, N.N.4
Rabinovich, D.5
Kennard, O.6
-
89
-
-
0034641947
-
The crystal structure of DNA mismatch repair protein MutS binding to a G×T mismatch
-
Lamers M.H., Perrakis A., Enzlin J.H., Winterwerp H.H., de Wind N., Sixma T.K. The crystal structure of DNA mismatch repair protein MutS binding to a G×T mismatch. Nature 2000, 407:711-717.
-
(2000)
Nature
, vol.407
, pp. 711-717
-
-
Lamers, M.H.1
Perrakis, A.2
Enzlin, J.H.3
Winterwerp, H.H.4
de Wind, N.5
Sixma, T.K.6
-
90
-
-
2342559194
-
Functional interactions between the MutL and Vsr proteins of Escherichia coli are dependent on the N-terminus of Vsr
-
Monastiriakos S.K., Doiron K.M., Siponen M.I., Cupples C.G. Functional interactions between the MutL and Vsr proteins of Escherichia coli are dependent on the N-terminus of Vsr. DNA Repair 2004, 3:639-647.
-
(2004)
DNA Repair
, vol.3
, pp. 639-647
-
-
Monastiriakos, S.K.1
Doiron, K.M.2
Siponen, M.I.3
Cupples, C.G.4
-
91
-
-
70350064591
-
Changes in the conformation of the Vsr endonuclease amino-terminal domain accompany DNA cleavage
-
Polosina Y.Y., Cupples C.G. Changes in the conformation of the Vsr endonuclease amino-terminal domain accompany DNA cleavage. J. Biochem. 2009, 146:523-526.
-
(2009)
J. Biochem.
, vol.146
, pp. 523-526
-
-
Polosina, Y.Y.1
Cupples, C.G.2
-
92
-
-
0028032935
-
Strand-specific cleavage of mismatch-containing DNA by deoxyinosine 3'-endonuclease from Escherichia coli
-
Yao M., Kow Y.W. Strand-specific cleavage of mismatch-containing DNA by deoxyinosine 3'-endonuclease from Escherichia coli. J. Biol. Chem. 1994, 269:31390-31396.
-
(1994)
J. Biol. Chem.
, vol.269
, pp. 31390-31396
-
-
Yao, M.1
Kow, Y.W.2
-
93
-
-
0028845857
-
Interaction of deoxyinosine 3'-endonuclease from Escherichia coli with DNA containing deoxyinosine
-
Yao M., Kow Y.W. Interaction of deoxyinosine 3'-endonuclease from Escherichia coli with DNA containing deoxyinosine. J. Biol. Chem. 1995, 270:28609-28616.
-
(1995)
J. Biol. Chem.
, vol.270
, pp. 28609-28616
-
-
Yao, M.1
Kow, Y.W.2
-
94
-
-
10544239535
-
Cleavage of insertion/deletion mismatches, flap and pseudo-Y DNA structures by deoxyinosine 3'-endonuclease from Escherichia coli
-
Yao M., Kow Y.W. Cleavage of insertion/deletion mismatches, flap and pseudo-Y DNA structures by deoxyinosine 3'-endonuclease from Escherichia coli. J. Biol. Chem. 1996, 271:30672-30676.
-
(1996)
J. Biol. Chem.
, vol.271
, pp. 30672-30676
-
-
Yao, M.1
Kow, Y.W.2
-
95
-
-
1842338079
-
Further characterization of Escherichia coli endonuclease V. Mechanism of recognition for deoxyinosine, deoxyuridine, and base mismatches in DNA
-
Yao M., Kow Y.W. Further characterization of Escherichia coli endonuclease V. Mechanism of recognition for deoxyinosine, deoxyuridine, and base mismatches in DNA. J. Biol. Chem. 1997, 272:30774-30779.
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 30774-30779
-
-
Yao, M.1
Kow, Y.W.2
-
96
-
-
0035979334
-
Multiple cleavage activities of endonuclease V from Thermotoga maritima: recognition and strand nicking mechanism
-
Huang J., Lu J., Barany F., Cao W. Multiple cleavage activities of endonuclease V from Thermotoga maritima: recognition and strand nicking mechanism. Biochemistry 2001, 40:8738-8748.
-
(2001)
Biochemistry
, vol.40
, pp. 8738-8748
-
-
Huang, J.1
Lu, J.2
Barany, F.3
Cao, W.4
-
97
-
-
84868366948
-
The human homolog of Escherichia coli endonuclease V is a nucleolar protein with affinity for branched DNA structures
-
Fladeby C., Vik E.S., Laerdahl J.K., Gran Neurauter C., Heggelund J.E., Thorgaard E., Strom-Andersen P., Bjoras M., Dalhus B., Alseth I. The human homolog of Escherichia coli endonuclease V is a nucleolar protein with affinity for branched DNA structures. PLoS One 2012, 7:e47466.
-
(2012)
PLoS One
, vol.7
-
-
Fladeby, C.1
Vik, E.S.2
Laerdahl, J.K.3
Gran Neurauter, C.4
Heggelund, J.E.5
Thorgaard, E.6
Strom-Andersen, P.7
Bjoras, M.8
Dalhus, B.9
Alseth, I.10
-
98
-
-
3242875178
-
Cleavage of deoxyoxanosine-containing oligodeoxyribonucleotides by bacterial endonuclease V
-
Hitchcock T.M., Gao H., Cao W. Cleavage of deoxyoxanosine-containing oligodeoxyribonucleotides by bacterial endonuclease V. Nucleic Acids Res. 2004, 32:4071-4080.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 4071-4080
-
-
Hitchcock, T.M.1
Gao, H.2
Cao, W.3
-
99
-
-
84881412394
-
Human endonuclease V is a ribonuclease specific for inosine-containing RNA
-
Morita Y., Shibutani T., Nakanishi N., Nishikura K., Iwai S., Kuraoka I. Human endonuclease V is a ribonuclease specific for inosine-containing RNA. Nat. Commun. 2013, 4:2273.
-
(2013)
Nat. Commun.
, vol.4
, pp. 2273
-
-
Morita, Y.1
Shibutani, T.2
Nakanishi, N.3
Nishikura, K.4
Iwai, S.5
Kuraoka, I.6
-
100
-
-
84881460714
-
Endonuclease V cleaves at inosines in RNA
-
Vik E.S., Nawaz M.S., Strom Andersen P., Fladeby C., Bjoras M., Dalhus B., Alseth I. Endonuclease V cleaves at inosines in RNA. Nat. Commun. 2013, 4:2271.
-
(2013)
Nat. Commun.
, vol.4
, pp. 2271
-
-
Vik, E.S.1
Nawaz, M.S.2
Strom Andersen, P.3
Fladeby, C.4
Bjoras, M.5
Dalhus, B.6
Alseth, I.7
-
101
-
-
84873406034
-
Structural basis of DNA loop recognition by endonuclease V
-
Rosnes I., Rowe A.D., Vik E.S., Forstrom R.J., Alseth I., Bjoras M., Dalhus B. Structural basis of DNA loop recognition by endonuclease V. Structure 2013, 21:257-265.
-
(2013)
Structure
, vol.21
, pp. 257-265
-
-
Rosnes, I.1
Rowe, A.D.2
Vik, E.S.3
Forstrom, R.J.4
Alseth, I.5
Bjoras, M.6
Dalhus, B.7
-
102
-
-
79953838905
-
Structures of human exonuclease 1 DNA complexes suggest a unified mechanism for nuclease family
-
Orans J., McSweeney E.A., Iyer R.R., Hast M.A., Hellinga H.W., Modrich P., Beese L.S. Structures of human exonuclease 1 DNA complexes suggest a unified mechanism for nuclease family. Cell 2011, 145:212-223.
-
(2011)
Cell
, vol.145
, pp. 212-223
-
-
Orans, J.1
McSweeney, E.A.2
Iyer, R.R.3
Hast, M.A.4
Hellinga, H.W.5
Modrich, P.6
Beese, L.S.7
-
103
-
-
20144367589
-
Structural basis for recruitment of human flap endonuclease 1 to PCNA
-
Sakurai S., Kitano K., Yamaguchi H., Hamada K., Okada K., Fukuda K., Uchida M., Ohtsuka E., Morioka H., Hakoshima T. Structural basis for recruitment of human flap endonuclease 1 to PCNA. EMBO J. 2005, 24:683-693.
-
(2005)
EMBO J.
, vol.24
, pp. 683-693
-
-
Sakurai, S.1
Kitano, K.2
Yamaguchi, H.3
Hamada, K.4
Okada, K.5
Fukuda, K.6
Uchida, M.7
Ohtsuka, E.8
Morioka, H.9
Hakoshima, T.10
-
104
-
-
67349212889
-
Coordination of dual incision and repair synthesis in human nucleotide excision repair
-
Staresincic L., Fagbemi A.F., Enzlin J.H., Gourdin A.M., Wijgers N., Dunand-Sauthier I., Giglia-Mari G., Clarkson S.G., Vermeulen W., Scharer O.D. Coordination of dual incision and repair synthesis in human nucleotide excision repair. EMBO J. 2009, 28:1111-1120.
-
(2009)
EMBO J.
, vol.28
, pp. 1111-1120
-
-
Staresincic, L.1
Fagbemi, A.F.2
Enzlin, J.H.3
Gourdin, A.M.4
Wijgers, N.5
Dunand-Sauthier, I.6
Giglia-Mari, G.7
Clarkson, S.G.8
Vermeulen, W.9
Scharer, O.D.10
-
105
-
-
79960377998
-
XPB and XPD helicases in TFIIH orchestrate DNA duplex opening and damage verification to coordinate repair with transcription and cell cycle via CAK kinase
-
Fuss J.O., Tainer J.A. XPB and XPD helicases in TFIIH orchestrate DNA duplex opening and damage verification to coordinate repair with transcription and cell cycle via CAK kinase. DNA Repair 2011, 10:697-713.
-
(2011)
DNA Repair
, vol.10
, pp. 697-713
-
-
Fuss, J.O.1
Tainer, J.A.2
-
106
-
-
84888309658
-
Observation of unpaired substrate DNA in the flap endonuclease-1 active site
-
Finger L.D., Patel N., Beddows A., Ma L., Exell J.C., Jardine E., Jones A.C., Grasby J.A. Observation of unpaired substrate DNA in the flap endonuclease-1 active site. Nucleic Acids Res. 2013, 41:9839-9847.
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. 9839-9847
-
-
Finger, L.D.1
Patel, N.2
Beddows, A.3
Ma, L.4
Exell, J.C.5
Jardine, E.6
Jones, A.C.7
Grasby, J.A.8
-
107
-
-
0032478718
-
DNA structural elements required for ERCC1-XPF endonuclease activity
-
de Laat W.L., Appeldoorn E., Jaspers N.G., Hoeijmakers J.H. DNA structural elements required for ERCC1-XPF endonuclease activity. J. Biol. Chem. 1998, 273:7835-7842.
-
(1998)
J. Biol. Chem.
, vol.273
, pp. 7835-7842
-
-
de Laat, W.L.1
Appeldoorn, E.2
Jaspers, N.G.3
Hoeijmakers, J.H.4
-
108
-
-
0032567535
-
Identification of a potent DNase activity associated with RNase T of Escherichia coli
-
Viswanathan M., Dower K.W., Lovett S.T. Identification of a potent DNase activity associated with RNase T of Escherichia coli. J. Biol. Chem. 1998, 273:35126-35131.
-
(1998)
J. Biol. Chem.
, vol.273
, pp. 35126-35131
-
-
Viswanathan, M.1
Dower, K.W.2
Lovett, S.T.3
-
109
-
-
0037119408
-
The physiological role of RNase T can be explained by its unusual substrate specificity
-
Zuo Y., Deutscher M.P. The physiological role of RNase T can be explained by its unusual substrate specificity. J. Biol. Chem. 2002, 277:29654-29661.
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 29654-29661
-
-
Zuo, Y.1
Deutscher, M.P.2
-
110
-
-
79955799175
-
Double-strand break repair-independent role for BRCA2 in blocking stalled replication fork degradation by MRE11
-
Schlacher K., Christ N., Siaud N., Egashira A., Wu H., Jasin M. Double-strand break repair-independent role for BRCA2 in blocking stalled replication fork degradation by MRE11. Cell 2011, 145:529-542.
-
(2011)
Cell
, vol.145
, pp. 529-542
-
-
Schlacher, K.1
Christ, N.2
Siaud, N.3
Egashira, A.4
Wu, H.5
Jasin, M.6
-
111
-
-
84964827208
-
MRE11 facilitates the removal of human topoisomerase II complexes from genomic DNA
-
Lee K.C., Padget K., Curtis H., Cowell I.G., Moiani D., Sondka Z., Morris N.J., Jackson G.H., Cockell S.J., Tainer J.A., Austin C.A. MRE11 facilitates the removal of human topoisomerase II complexes from genomic DNA. Biol. Open 2012, 1:863-873.
-
(2012)
Biol. Open
, vol.1
, pp. 863-873
-
-
Lee, K.C.1
Padget, K.2
Curtis, H.3
Cowell, I.G.4
Moiani, D.5
Sondka, Z.6
Morris, N.J.7
Jackson, G.H.8
Cockell, S.J.9
Tainer, J.A.10
Austin, C.A.11
-
112
-
-
77956819782
-
ATM regulates Mre11-dependent DNA end-degradation and microhomology-mediated end joining
-
Rahal E.A., Henricksen L.A., Li Y., Williams R.S., Tainer J.A., Dixon K. ATM regulates Mre11-dependent DNA end-degradation and microhomology-mediated end joining. Cell Cycle 2010, 9:2866-2877.
-
(2010)
Cell Cycle
, vol.9
, pp. 2866-2877
-
-
Rahal, E.A.1
Henricksen, L.A.2
Li, Y.3
Williams, R.S.4
Tainer, J.A.5
Dixon, K.6
-
113
-
-
0035131930
-
Alterations of the double-strand break repair gene MRE11 in cancer
-
Fukuda T., Sumiyoshi T., Takahashi M., Kataoka T., Asahara T., Inui H., Watatani M., Yasutomi M., Kamada N., Miyagawa K. Alterations of the double-strand break repair gene MRE11 in cancer. Cancer Res. 2001, 61:23-26.
-
(2001)
Cancer Res.
, vol.61
, pp. 23-26
-
-
Fukuda, T.1
Sumiyoshi, T.2
Takahashi, M.3
Kataoka, T.4
Asahara, T.5
Inui, H.6
Watatani, M.7
Yasutomi, M.8
Kamada, N.9
Miyagawa, K.10
-
114
-
-
18344395671
-
Human MRE11 is inactivated in mismatch repair-deficient cancers
-
Giannini G., Ristori E., Cerignoli F., Rinaldi C., Zani M., Viel A., Ottini L., Crescenzi M., Martinotti S., Bignami M., Frati L., Screpanti I., Gulino A. Human MRE11 is inactivated in mismatch repair-deficient cancers. EMBO Rep. 2002, 3:248-254.
-
(2002)
EMBO Rep.
, vol.3
, pp. 248-254
-
-
Giannini, G.1
Ristori, E.2
Cerignoli, F.3
Rinaldi, C.4
Zani, M.5
Viel, A.6
Ottini, L.7
Crescenzi, M.8
Martinotti, S.9
Bignami, M.10
Frati, L.11
Screpanti, I.12
Gulino, A.13
-
115
-
-
33749993417
-
The consensus coding sequences of human breast and colorectal cancers
-
Sjoblom T., Jones S., Wood L.D., Parsons D.W., Lin J., Barber T.D., Mandelker D., Leary R.J., Ptak J., Silliman N., Szabo S., Buckhaults P., Farrell C., Meeh P., Markowitz S.D., Willis J., Dawson D., Willson J.K., Gazdar A.F., Hartigan J., Wu L., Liu C., Parmigiani G., Park B.H., Bachman K.E., Papadopoulos N., Vogelstein B., Kinzler K.W., Velculescu V.E. The consensus coding sequences of human breast and colorectal cancers. Science 2006, 314:268-274.
-
(2006)
Science
, vol.314
, pp. 268-274
-
-
Sjoblom, T.1
Jones, S.2
Wood, L.D.3
Parsons, D.W.4
Lin, J.5
Barber, T.D.6
Mandelker, D.7
Leary, R.J.8
Ptak, J.9
Silliman, N.10
Szabo, S.11
Buckhaults, P.12
Farrell, C.13
Meeh, P.14
Markowitz, S.D.15
Willis, J.16
Dawson, D.17
Willson, J.K.18
Gazdar, A.F.19
Hartigan, J.20
Wu, L.21
Liu, C.22
Parmigiani, G.23
Park, B.H.24
Bachman, K.E.25
Papadopoulos, N.26
Vogelstein, B.27
Kinzler, K.W.28
Velculescu, V.E.29
more..
-
116
-
-
56649086648
-
Aberrations of the MRE11-RAD50-NBS1 DNA damage sensor complex in human breast cancer: MRE11 as a candidate familial cancer-predisposing gene
-
Bartkova J., Tommiska J., Oplustilova L., Aaltonen K., Tamminen A., Heikkinen T., Mistrik M., Aittomaki K., Blomqvist C., Heikkila P., Lukas J., Nevanlinna H., Bartek J. Aberrations of the MRE11-RAD50-NBS1 DNA damage sensor complex in human breast cancer: MRE11 as a candidate familial cancer-predisposing gene. Mol. Oncol. 2008, 2:296-316.
-
(2008)
Mol. Oncol.
, vol.2
, pp. 296-316
-
-
Bartkova, J.1
Tommiska, J.2
Oplustilova, L.3
Aaltonen, K.4
Tamminen, A.5
Heikkinen, T.6
Mistrik, M.7
Aittomaki, K.8
Blomqvist, C.9
Heikkila, P.10
Lukas, J.11
Nevanlinna, H.12
Bartek, J.13
-
117
-
-
0033544724
-
The DNA double-strand break repair gene hMRE11 is mutated in individuals with an ataxia-telangiectasia-like disorder
-
Stewart G.S., Maser R.S., Stankovic T., Bressan D.A., Kaplan M.I., Jaspers N.G., Raams A., Byrd P.J., Petrini J.H., Taylor A.M. The DNA double-strand break repair gene hMRE11 is mutated in individuals with an ataxia-telangiectasia-like disorder. Cell 1999, 99:577-587.
-
(1999)
Cell
, vol.99
, pp. 577-587
-
-
Stewart, G.S.1
Maser, R.S.2
Stankovic, T.3
Bressan, D.A.4
Kaplan, M.I.5
Jaspers, N.G.6
Raams, A.7
Byrd, P.J.8
Petrini, J.H.9
Taylor, A.M.10
-
118
-
-
84871192231
-
Mre11 ATLD17/18 mutation retains Tel1/ATM activity but blocks DNA double-strand break repair
-
Limbo O., Moiani D., Kertokalio A., Wyman C., Tainer J.A., Russell P. Mre11 ATLD17/18 mutation retains Tel1/ATM activity but blocks DNA double-strand break repair. Nucleic Acids Res. 2012, 40:11435-11449.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 11435-11449
-
-
Limbo, O.1
Moiani, D.2
Kertokalio, A.3
Wyman, C.4
Tainer, J.A.5
Russell, P.6
-
119
-
-
80855133532
-
Crystal structure of human Mre11: understanding tumorigenic mutations
-
Park Y.B., Chae J., Kim Y.C., Cho Y. Crystal structure of human Mre11: understanding tumorigenic mutations. Structure 2011, 19:1591-1602.
-
(2011)
Structure
, vol.19
, pp. 1591-1602
-
-
Park, Y.B.1
Chae, J.2
Kim, Y.C.3
Cho, Y.4
-
120
-
-
0032085295
-
The 3' to 5' exonuclease activity of Mre 11 facilitates repair of DNA double-strand breaks
-
Paull T.T., Gellert M. The 3' to 5' exonuclease activity of Mre 11 facilitates repair of DNA double-strand breaks. Mol. Cell 1998, 1:969-979.
-
(1998)
Mol. Cell
, vol.1
, pp. 969-979
-
-
Paull, T.T.1
Gellert, M.2
-
121
-
-
0035929667
-
DNA structure-specific nuclease activities in the Saccharomyces cerevisiae Rad50*Mre11 complex
-
Trujillo K.M., Sung P. DNA structure-specific nuclease activities in the Saccharomyces cerevisiae Rad50*Mre11 complex. J. Biol. Chem. 2001, 276:35458-35464.
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 35458-35464
-
-
Trujillo, K.M.1
Sung, P.2
-
122
-
-
84856074733
-
ATP hydrolysis by RAD50 protein switches MRE11 enzyme from endonuclease to exonuclease
-
Majka J., Alford B., Ausio J., Finn R.M., McMurray C.T. ATP hydrolysis by RAD50 protein switches MRE11 enzyme from endonuclease to exonuclease. J. Biol. Chem. 2012, 287:2328-2341.
-
(2012)
J. Biol. Chem.
, vol.287
, pp. 2328-2341
-
-
Majka, J.1
Alford, B.2
Ausio, J.3
Finn, R.M.4
McMurray, C.T.5
-
123
-
-
79956301873
-
Crystal structure of the Mre11-Rad50-ATPgammaS complex: understanding the interplay between Mre11 and Rad50
-
Lim H.S., Kim J.S., Park Y.B., Gwon G.H., Cho Y. Crystal structure of the Mre11-Rad50-ATPgammaS complex: understanding the interplay between Mre11 and Rad50. Genes Dev. 2011, 25:1091-1104.
-
(2011)
Genes Dev.
, vol.25
, pp. 1091-1104
-
-
Lim, H.S.1
Kim, J.S.2
Park, Y.B.3
Gwon, G.H.4
Cho, Y.5
-
124
-
-
79953803622
-
ABC ATPase signature helices in Rad50 link nucleotide state to Mre11 interface for DNA repair
-
Williams G.J., Williams R.S., Williams J.S., Moncalian G., Arvai A.S., Limbo O., Guenther G., SilDas S., Hammel M., Russell P., Tainer J.A. ABC ATPase signature helices in Rad50 link nucleotide state to Mre11 interface for DNA repair. Nat. Struct. Mol. Biol. 2011, 18:423-431.
-
(2011)
Nat. Struct. Mol. Biol.
, vol.18
, pp. 423-431
-
-
Williams, G.J.1
Williams, R.S.2
Williams, J.S.3
Moncalian, G.4
Arvai, A.S.5
Limbo, O.6
Guenther, G.7
SilDas, S.8
Hammel, M.9
Russell, P.10
Tainer, J.A.11
-
125
-
-
84855870632
-
ATP driven structural changes of the bacterial Mre11:Rad50 catalytic head complex
-
Mockel C., Lammens K., Schele A., Hopfner K.P. ATP driven structural changes of the bacterial Mre11:Rad50 catalytic head complex. Nucleic Acids Res. 2012, 40:914-927.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 914-927
-
-
Mockel, C.1
Lammens, K.2
Schele, A.3
Hopfner, K.P.4
-
126
-
-
84880840334
-
Comprehensive macromolecular conformations mapped by quantitative SAXS analyses
-
Hura G.L., Budworth H., Dyer K.N., Rambo R.P., Hammel M., McMurray C.T., Tainer J.A. Comprehensive macromolecular conformations mapped by quantitative SAXS analyses. Nat. Methods 2013, 10:453-454.
-
(2013)
Nat. Methods
, vol.10
, pp. 453-454
-
-
Hura, G.L.1
Budworth, H.2
Dyer, K.N.3
Rambo, R.P.4
Hammel, M.5
McMurray, C.T.6
Tainer, J.A.7
-
127
-
-
84896125249
-
ATP-driven Rad50 conformations regulate DNA tethering, end resection, and ATM checkpoint signaling
-
in press
-
Deshpande R.A., Williams G.J., Limbo O., Williams R.S., Kunhlein J., Lee J.H., Classen S., Guenther G., Russell P., Tainer J.A., Paull T.T. ATP-driven Rad50 conformations regulate DNA tethering, end resection, and ATM checkpoint signaling. EMBO J. 2014, 33. in press.
-
(2014)
EMBO J.
, vol.33
-
-
Deshpande, R.A.1
Williams, G.J.2
Limbo, O.3
Williams, R.S.4
Kunhlein, J.5
Lee, J.H.6
Classen, S.7
Guenther, G.8
Russell, P.9
Tainer, J.A.10
Paull, T.T.11
-
128
-
-
0034093291
-
Passing the baton in base excision repair
-
Wilson S.H., Kunkel T.A. Passing the baton in base excision repair. Nat. Struct. Biol. 2000, 7:176-178.
-
(2000)
Nat. Struct. Biol.
, vol.7
, pp. 176-178
-
-
Wilson, S.H.1
Kunkel, T.A.2
-
129
-
-
0032822325
-
Envisioning the molecular choreography of DNA base excision repair
-
Parikh S.S., Mol C.D., Hosfield D.J., Tainer J.A. Envisioning the molecular choreography of DNA base excision repair. Curr. Opin. Struct. Biol. 1999, 9:37-47.
-
(1999)
Curr. Opin. Struct. Biol.
, vol.9
, pp. 37-47
-
-
Parikh, S.S.1
Mol, C.D.2
Hosfield, D.J.3
Tainer, J.A.4
-
130
-
-
0742321956
-
Structural basis for FEN-1 substrate specificity and PCNA-mediated activation in DNA replication and repair
-
Chapados B.R., Hosfield D.J., Han S., Qiu J., Yelent B., Shen B., Tainer J.A. Structural basis for FEN-1 substrate specificity and PCNA-mediated activation in DNA replication and repair. Cell 2004, 116:39-50.
-
(2004)
Cell
, vol.116
, pp. 39-50
-
-
Chapados, B.R.1
Hosfield, D.J.2
Han, S.3
Qiu, J.4
Yelent, B.5
Shen, B.6
Tainer, J.A.7
-
131
-
-
0035965238
-
Stimulation of eukaryotic flap endonuclease-1 activities by proliferating cell nuclear antigen (PCNA) is independent of its in vitro interaction via a consensus PCNA binding region
-
Frank G., Qiu J., Zheng L., Shen B. Stimulation of eukaryotic flap endonuclease-1 activities by proliferating cell nuclear antigen (PCNA) is independent of its in vitro interaction via a consensus PCNA binding region. J. Biol. Chem. 2001, 276:36295-36302.
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 36295-36302
-
-
Frank, G.1
Qiu, J.2
Zheng, L.3
Shen, B.4
-
132
-
-
27144495464
-
The two DNA clamps Rad9/Rad1/Hus1 complex and proliferating cell nuclear antigen differentially regulate flap endonuclease 1 activity
-
Friedrich-Heineken E., Toueille M., Tannler B., Burki C., Ferrari E., Hottiger M.O., Hubscher U. The two DNA clamps Rad9/Rad1/Hus1 complex and proliferating cell nuclear antigen differentially regulate flap endonuclease 1 activity. J. Mol. Biol. 2005, 353:980-989.
-
(2005)
J. Mol. Biol.
, vol.353
, pp. 980-989
-
-
Friedrich-Heineken, E.1
Toueille, M.2
Tannler, B.3
Burki, C.4
Ferrari, E.5
Hottiger, M.O.6
Hubscher, U.7
-
133
-
-
0034679597
-
Two modes of FEN1 binding to PCNA regulated by DNA
-
Gomes X.V., Burgers P.M. Two modes of FEN1 binding to PCNA regulated by DNA. EMBO J. 2000, 19:3811-3821.
-
(2000)
EMBO J.
, vol.19
, pp. 3811-3821
-
-
Gomes, X.V.1
Burgers, P.M.2
-
134
-
-
0032475933
-
Structure of the DNA repair and replication endonuclease and exonuclease FEN-1: coupling DNA and PCNA binding to FEN-1 activity
-
Hosfield D.J., Mol C.D., Shen B., Tainer J.A. Structure of the DNA repair and replication endonuclease and exonuclease FEN-1: coupling DNA and PCNA binding to FEN-1 activity. Cell 1998, 95:135-146.
-
(1998)
Cell
, vol.95
, pp. 135-146
-
-
Hosfield, D.J.1
Mol, C.D.2
Shen, B.3
Tainer, J.A.4
-
135
-
-
0041885325
-
Proliferating cell nuclear antigen (PCNA): a dancer with many partners
-
Maga G., Hubscher U. Proliferating cell nuclear antigen (PCNA): a dancer with many partners. J. Cell Sci. 2003, 116:3051-3060.
-
(2003)
J. Cell Sci.
, vol.116
, pp. 3051-3060
-
-
Maga, G.1
Hubscher, U.2
-
136
-
-
34249066085
-
PCNA, the maestro of the replication fork
-
Moldovan G.L., Pfander B., Jentsch S. PCNA, the maestro of the replication fork. Cell 2007, 129:665-679.
-
(2007)
Cell
, vol.129
, pp. 665-679
-
-
Moldovan, G.L.1
Pfander, B.2
Jentsch, S.3
-
137
-
-
84861873482
-
Repair complexes of FEN1 endonuclease, DNA, and Rad9-Hus1-Rad1 are distinguished from their PCNA counterparts by functionally important stability
-
Querol-Audi J., Yan C., Xu X., Tsutakawa S.E., Tsai M.S., Tainer J.A., Cooper P.K., Nogales E., Ivanov I. Repair complexes of FEN1 endonuclease, DNA, and Rad9-Hus1-Rad1 are distinguished from their PCNA counterparts by functionally important stability. Proc. Nat. Acad. Sci. U.S.A. 2012, 109:8528-8533.
-
(2012)
Proc. Nat. Acad. Sci. U.S.A.
, vol.109
, pp. 8528-8533
-
-
Querol-Audi, J.1
Yan, C.2
Xu, X.3
Tsutakawa, S.E.4
Tsai, M.S.5
Tainer, J.A.6
Cooper, P.K.7
Nogales, E.8
Ivanov, I.9
-
138
-
-
34147209417
-
Disruption of the FEN-1/PCNA interaction results in DNA replication defects, pulmonary hypoplasia, pancytopenia, and newborn lethality in mice
-
Zheng L., Dai H., Qiu J., Huang Q., Shen B. Disruption of the FEN-1/PCNA interaction results in DNA replication defects, pulmonary hypoplasia, pancytopenia, and newborn lethality in mice. Mol. Cell Biol. 2007, 27:3176-3186.
-
(2007)
Mol. Cell Biol.
, vol.27
, pp. 3176-3186
-
-
Zheng, L.1
Dai, H.2
Qiu, J.3
Huang, Q.4
Shen, B.5
-
139
-
-
0030749867
-
Conditional gene targeted deletion by Cre recombinase demonstrates the requirement for the double-strand break repair Mre11 protein in murine embryonic stem cells
-
Xiao Y., Weaver D.T. Conditional gene targeted deletion by Cre recombinase demonstrates the requirement for the double-strand break repair Mre11 protein in murine embryonic stem cells. Nucleic Acids Res. 1997, 25:2985-2991.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 2985-2991
-
-
Xiao, Y.1
Weaver, D.T.2
|