Methods for detection and characterization of protein S-nitrosylation

Methods

Volumn 62, Issue 2, 2013, Pages 138-150

  Chen, Yi Ju ^a   Ching, Wei Chieh ^a,b   Lin, Yu Pei ^c   Chen, Yu Ju ^a,b,c  

^a INSTITUTE OF CHEMISTRY   (Taiwan)

^b NATIONAL DEFENSE MEDICAL CENTER   (Taiwan)

^c NATIONAL TAIWAN UNIVERSITY   (Taiwan)

Author keywords

Biotin switch method; Quantitative proteomic approach; S nitrosylation; Site specific identification

Indexed keywords

BIOTIN; PHOSPHINE; PROTEIN S; SULFUR;

ANALYTIC METHOD; ARTICLE; ASSAY; CARDIOVASCULAR DISEASE; CHEMICAL BINDING; CHEMOLUMINESCENCE; COLORIMETRY; ELECTROSPRAY MASS SPECTROMETRY; FLUORESCENCE ANALYSIS; HUMAN; HYDROLYSIS; IMMUNITY; IMMUNOASSAY; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; NEOPLASM; NERVE CELL DEGENERATION; NITROSYLATION; NONHUMAN; PATHOPHYSIOLOGY; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN DEGRADATION; PROTEIN PURIFICATION; PROTEOMICS; SIGNAL NOISE RATIO; TANDEM MASS SPECTROMETRY;

BIOTIN SWITCH METHOD; QUANTITATIVE PROTEOMIC APPROACH; S-NITROSYLATION; SITE-SPECIFIC IDENTIFICATION;

ANIMALS; CHROMATOGRAPHY, AFFINITY; HUMANS; PROTEIN PROCESSING, POST-TRANSLATIONAL; PROTEOME; S-NITROSOTHIOLS; STAINING AND LABELING; TANDEM MASS SPECTROMETRY;

EID: 84882709641     PISSN: 10462023     EISSN: 10959130     Source Type: Journal    
DOI: 10.1016/j.ymeth.2013.04.016     Document Type: Article

References (233)

1. Gruetter C.A., Barry B.K., Mcnamara D.B., Gruetter D.Y., Kadowitz P.J., Ignarro L. J. Cyclic Nucleotide Res. 1979, 5:211-224.
2. Villalobo A. FEBS J. 2006, 273:2329-2344.
3. Sanders K.M., Ward S.M. Am. J. Physiol. Gastrointest. Liver Physiol. 1992, 262:G379-G392.
4. Ignarro L.J., Lippton H., Edwards J.C., Baricos W.H., Hyman A.L., Kadowitz P.J., Gruetter C.A. J. Pharmacol. Exp. Ther. 1981, 218:739-749.
5. Myers P.R., Minor R.L., Guerra R., Bates J.N., Harrison D.G. Nature 1990, 345:161-163.
6. Stone J.R., Marletta M.A. Biochemistry 1994, 33:5636-5640.
7. Averill B.A. Chem. Rev. 1996, 96:2951-2964.
8. Nathan C., Xie Q.-W. Cell 1994, 78:915-918.
9. Gow A.J., Chen Q., Hess D.T., Day B.J., Ischiropoulos H., Stamler J.S. J. Biol. Chem. 2002, 277:9637-9640.
10. Hess D.T., Matsumoto A., Kim S.-O., Marshall H.E., Stamler J.S. Nat. Rev. Mol. Cell Biol. 2005, 6:150-166.
11. Stamler J.S., Simon D.I., Osborne J.A., Mullins M.E., Jaraki O., Michel T., Singel D.J., Loscalzo J. Proc. Natl. Acad. Sci. USA 1992, 89:444-448.
12. Stamler J.S., Simon D.I., Jaraki O., Osborne J.A., Francis S., Mullins M., Singel D., Loscalzo J. Proc. Natl. Acad. Sci. USA 1992, 89:8087-8091.
13. Chen Y.-Y., Huang Y.-F., Khoo K.-H., Meng T.-C. Methods 2007, 42:243-249.
14. Zhou X., Han P., Li J., Zhang X., Huang B., Ruan H.-Q., Chen C. PLoS ONE 2010, 5:e10015.
15. Stamler J.S., Toone E.J., Lipton S.A., Sucher N.J. Neuron 1997, 18:691-696.
16. Pérez-Mato I., Castro C., Ruiz F.A., Corrales F.J., Mato J.M. J. Biol. Chem. 1999, 274:17075-17079.
17. Marino S.M., Gladyshev V.N. J. Mol. Biol. 2010, 295:844-859.
18. Doulias P.-T., Greene J.L., Greco T.M., Tenopoulou M., Seeholzer S.H., Dunbrack R.L., Ischiropoulos H. Proc. Natl. Acad. Sci. USA 2010, 107:16958-16963.
19. Chen Y.-J., Ku W.-C., Lin P.-Y., Chou H.-C., Khoo K.-H., Chen Y.-J. J. Proteome Res. 2010, 9:6417-6439.
20. Koppenol W.H. Free Radical Biol. Med. 1998, 25:385-391.
21. Jursic B.S. Int. J. Quantum Chem. 1997, 62:291-296.
22. Barth A., Bezlyepkina N. J. Biol. Chem. 2004, 279:51888-51896.
23. Odoko M., Yao M., Yamashita E., Nakashima R., Hirata K., Aoyama H., Muramoto K., Shinzawa-Itoh K., Yoshikawaa S., Tsukihara T. J. Appl. Cryst. 2001, 34:80-81.
24. Kim S.F., Huri D.A., Snyder S.H. Science 2005, 310:1966-1970.
25. Nishida M., Ogushi M., Suda R., Toyotaka M., Saiki S., Kitajima N., Nakaya M., Kim K.-M., Ide T., Sato Y., Inoue K., Kurose H. Proc. Natl. Acad. Sci. USA 2011, 108:6662-6667.
26. Bellinger A.M., Reiken S., Carlson C., Mongillo M., Liu X., Rothman L., Matecki S., Lacampagne A., Marks A.R. Nat. Med. 2009, 15:325-330.
27. Martínez-Ruiz A., Villanueva L., De Orduña C.G., López-Ferrer D., Higueras M., Tarín C., Rodríguez-Crespo I., Vázquez J., Lamas S. Proc. Natl. Acad. Sci. USA 2005, 102:8525-8530.
28. Iwakiri Y., Satoh A., Chatterjee S., Toomre D.K., Chalouni C.M., Fulton D., Groszmann R.J., Shah V.H., Sessa W.C. Proc. Natl. Acad. Sci. USA 2006, 103:19777-19782.
29. Mitchell D.A., Marletta M.A. Nat. Chem. Biol. 2005, 1:154-158.
30. Gow A.J., Luchsinger B.P., Pawloski J.R., Singel D.J., Stamler J.S. Proc. Natl. Acad. Sci. USA 1999, 96:9027-9032.
31. Romeo A.A., Capobianco J.A., English A.M. J. Am. Chem. Soc. 2003, 125:14370-14378.
32. Inoue K., Akaike T., Miyamoto Y., Okamoto T., Sawa T., Otagiri M., Suzuki S., Yoshimura T., Maeda H. J. Biol. Chem. 1999, 274:27069-27075.
33. Luchsinger B.P., Rich E.N., Gow A.J., Williams E.M., Stamler J.S., Singel D.J. Proc. Natl. Acad. Sci. USA 2003, 100:461-466.
34. Benhar M., Forrester M.T., Hess D.T., Stamler J.S. Science 2008, 320:1050-1054.
35. Forrester M.T., Seth D., Hausladen A., Eyler C.E., Foster M.W., Matsumoto A., Benhar M., Marshall H.E., Stamler J.S. J. Biol. Chem. 2009, 284:36160-36166.
36. Liu L., Hausladen A., Zeng M., Que L., Heitman J., Stamler J.S. Nature 2001, 410:490-494.
37. Bateman R.L., Rauh D., Tavshanjian B., Shokat K.M. J. Biol. Chem. 2008, 283:35756-35762.
38. Trujillo M., Alvarez M.A.N., Peluffo G., Freeman B.A., Radi R. J. Biol. Chem. 1998, 273:7828-7834.
39. Tannenbaum S.R., White F.M. ACS Chem. Biol. 2006, 1:615-618.
40. Mannick J.B., Schonhoff C.M. Arch. Biochem. Biophys. 2002, 408:1-6.
41. Martínez-Ruiz A., Lamas S. Cardiovasc. Res. 2004, 62:43-52.
42. Martínez-Ruiz A., Lamas S. Cardiovasc. Res. 2007, 75:220-228.
43. Foster M.W., Mcmahon T.J., Stamler J.S. Trends Mol. Med. 2003, 9:160-168.
44. Dall'agnol M., Bernstein C., Bernstein H., Garewal H., Payne C.M. Proteomics 2006, 6:1654-1662.
45. Nakamura T., Lipton S.A. Cell Death Differ. 2007, 14:1305-1314.
46. Huang B., Chen S.C., Wang D.L. Cardiovasc. Res. 2009, 83:536-546.
47. Yu S.-M., Hung L.-M., Lin C.-C. Circulation 1997, 95:1269-1277.
48. López-Farré A., Sánchez De Miguel L., Caramelo C., Gómez-Macías J., Garcia R., Mosquera J.R., De Frutos T., Millás I., Rivas F., Echezarreta G., Casado S. Am. J. Physiol. Heart Circ. Physiol. 1997, 272:H760-H768.
49. Ziche M., Morbidelli L., Masini E., Amerini S., Granger H.J., Maggi C.A., Geppetti P., Ledda F. J. Clin. Invest. 1994, 94:2036-2044.
50. Braam B., Roos R.D., Dijk A., Boer P., Post J.A., Kemmeren P.P.C.W., Holstege F.C.P., Bluysen H.A.R., Koomans H.A. Am. J. Physiol. Heart Circ. Physiol. 2004, 287:H1977-H1986.
51. Wang Z. Cancer Lett. 2012, 320:123-129.
52. Fukumura D., Kashiwagi S., Jain R.K. Nat. Rev. Cancer 2006, 6:521-534.
53. Lala P.K., Chakraborty C. Lancet Oncol. 2001, 2:149-156.
54. Rössig L., Fichtlscherer B., Breitschopf K., Haendeler J., Zeiher A.M., Mülsch A., Dimmeler S. J. Biol. Chem. 1999, 274:6823-6826.
55. Oliveira C.J.R., Schindler F., Ventura A.M., Morais M.S., Arai R.J., Debbas V., Stern A., Monteiro H.P. Free Radical Biol. Med. 2003, 35:381-396.
56. Ekmekcioglu S., Tang C.-H., Grimm E.A. Curr. Cancer Drug Targets 2005, 5:103-115.
57. Seth D., Stamler J.S. Curr. Opin. Chem. Biol. 2011, 15:129-136.
58. Forrester M.T., Foster M.W., Benhar M., Stamler J.S. Free Radical Biol. Med. 2009, 46:119-126.
59. Marzinzig M., Nussler A.K., Stadler J., Marzinzig E., Barthlen W., Nussler N.C., Beger H.G., Morris S.M., Brückner U.B. Nitric Oxide 1997, 1:177-189.
60. Saville B. Analyst 1958, 83:670-672.
61. Espey M.G., Thomas D.D., Miranda K.M., Wink D.A. Proc. Natl. Acad. Sci. USA 2002, 99:11127-11132.
62. Hausladen A., Rafikov R., Angelo M., Singel D.J., Nudler E., Stamler J.S. Proc. Natl. Acad. Sci. USA 2007, 104:2157-2162.
63. Park J.K.J., Kostka P. Anal. Biochem. 1997, 249:61-66.
64. Garzón J., Rodríguez-Muñoz M., Vicente-Sánchez A., Bailón C., Martínez-Murillo R., Sánchez-Blázquez P. Antioxid. Redox Signaling 2011, 15:873-887.
65. J. Biol. Chem. 2011, 286:e99984.
66. Chakrabarti S., Lekontseva O., Peters A., Davidge S.T. Cardiovasc. Res. 2010, 85:796-805.
67. Choudhary C., Mann M. Nat. Rev. Mol. Cell Biol. 2010, 11:427-439.
68. Kaneko R., Wada Y. J. Mass Spectrom. 2003, 38:526-530.
69. Wang Y., Liu T., Wu C., Li H. J. Am. Soc. Mass Spectrom. 2008, 19:1353-1360.
70. Knipp M., Braun O., Gehrig P.M., Sack R., Vasák M. J. Biol. Chem. 2003, 278:3410-3416.
71. Mirza U.A., Chait B.T., Lander H.M. J. Biol. Chem. 1995, 270:17185-17188.
72. Hao G., Gross S.S. J. Am. Soc. Mass Spectrom. 2006, 17:1725-1730.
73. Jaffrey S.R., Erdjument-Bromage H., Ferris C.D., Tempst P., Snyder S.H. Nat. Cell Biol. 2001, 3:193-197.
74. Forrester M.T., Thompson J.W., Foster M.W., Nogueira L., Moseley M.A., Stamler J.S. Nat. Biotechnol. 2009, 27:557-559.
75. Kuncewicz T., Sheta E.A., Goldknopf I.L., Kone B.C. Mol. Cell. Proteomics 2003, 2:156-163.
76. Foster M.W., Stamler J.S. J. Biol. Chem. 2004, 279:25891-25897.
77. Gao C., Guo H., Wei J., Mi Z., Wai P.Y., Kuo P.C. Nitric Oxide 2005, 12:121-126.
78. Lindermayr C., Saalbach G., Durner J. Plant Physiol. 2005, 137:921-930.
79. Giustarini D., Dalle-Donne I., Colombo R., Milzani A., Rossi R. Nitric Oxide 2008, 19:252-258.
80. Huang B., Chen C. Free Radical Biol. Med. 2006, 41:562-567.
81. Landino L.M., Koumas M.T., Mason C.E., Alston J.A. Biochem. Biophys. Res. Commun. 2006, 340:347-352.
82. Wang X., Kettenhofen N.J., Shiva S., Hogg N., Gladwin M.T. Free Radical Biol. Med. 2008, 44:1362-1372.
83. Kallakunta V.M., Staruch A., Mutus B. Biochim. Biophys. Acta 2010, 1800:23-30.
84. Hao G., Derakhshan B., Shi L., Campagne F., Gross S.S. Proc. Natl. Acad. Sci. USA 2006, 103:1012-1017.
85. Greco T.M., Hodara R., Parastatidis I., Heijnen H.F.G., Dennehy M.K., Liebler D.C., Ischiropoulos H. Proc. Natl. Acad. Sci. USA 2006, 103:7420-7425.
86. Whalen E.J., Foster M.W., Matsumoto A., Ozawa K., Violin J.D., Que L.G., Nelson C.D., Benhar M., Keys J.R., Rockman H.A., Koch W.J., Daaka Y., Lefkowitz R.J., Stamler J.S. Cell 2007, 129:511-522.
87. Camerini S., Polci M.L., Restuccia U., Usuelli V., Malgaroli A., Bachi A. J. Proteome Res. 2007, 6:3224-3231.
88. Huang B., Chen C. Free Radical Biol. Med. 2010, 49:447-456.
89. Forrester M.T., Foster M.W., Stamler J.S. J. Biol. Chem. 2007, 282:13977-13983.
90. Wang H., Xian M. Curr. Opin. Chem. Biol. 2011, 15:32-37.
91. Wang H., Xian M. Angew. Chem. Int. Ed. Engl. 2008, 47:6598-6601.
92. Zhang J., Wang H., Xian M. Org. Lett. 2009, 11:477-480.
93. Zhang J., Wang H., Xian M. J. Am. Chem. Soc. 2009, 131:3854-3855.
94. Zhang J., Li S., Zhang D., Wang H., Whorton A.R., Xian M. Org. Lett. 2010, 12:4208-4211.
95. Wang H., Zhang J., Xian M. J. Am. Chem. Soc. 2009, 131:13238-13239.
96. Saxon E., Bertozzi C.R. Science 2000, 287:2007-2010.
97. Bechtold E., Reisz J.A., Klomsiri C., Tsang A.W., Wright M.W., Poole L.B., Furdui C.M., King S.B. ACS Chem. Biol. 2010, 5:405-414.
98. Monique D.A., Carol B., Harris B., Harinder G., Claire M.P. Proteomics 2006, 6:1654-1662.
99. Chen Y.-Y., Chu H.-M., Pan K.-T., Teng C.-H., Wang D.-L., Wang A.H.J., Khoo K.-H., Meng T.-C. J. Biol. Chem. 2008, 283:35265-35272.
100. Sun J., Morgan M., Shen R.-F., Steenbergen C., Murphy E. Circ. Res. 2007, 101:1155-1163.
101. Kettenhofen N.J., Wang X., Gladwin M.T., Hogg N. Methods Enzymol. 2008, 441:53-71.
102. Kettenhofen N.J., Broniowska K.A., Keszler A., Zhang Y., Hogg N. J. Chromatogr. B Analyt. Technol. Biomed. Life Sci. 2007, 851:152-159.
103. Maeda K., Finnie C., Svensson B. Biochem. J. 2004, 378:497-507.
104. Han P., Zhou X., Huang B., Zhang X., Chen C. Anal. Biochem. 2008, 377:150-155.
105. Gygi S.P., Rist B., Gerber S.A., Turecek F., Gelb M.H., Aebersold R. Nat. Biotechnol. 1999, 17:994-999.
106. Li J., Steen H., Gygi S.P. Mol. Cell. Proteomics 2003, 2:1198-1204.
107. Ong S.-E., Blagoev B., Kratchmarova I., Kristensen D.B., Steen H., Pandey A., Mann M. Mol. Cell. Proteomics 2002, 1:376-386.
108. Aebersold R., Mann M. Nature 2003, 422:198-207.
109. Ranish J.A., Yi E.C., Leslie D.M., Purvine S.O., Goodlett D.R., Eng J., Aebersold R. Nat. Genet. 2003, 33:349-355.
110. Li C., Hong Y., Tan Y.-X., Zhou H., Ai J.-H., Li S.-J., Zhang L., Xia Q.-C., Wu J.-R., Wang H.-Y., Zeng R. Mol. Cell. Proteomics 2004, 3:399-409.
111. Aracena-Parks P., Goonasekera S.A., Gilman C.P., Dirksen R.T., Hidalgo C., Hamilton S.L. J. Biol. Chem. 2006, 281:40354-40368.
112. Wu C., Parrott A.M., Liu T., Jain M.R., Yang Y., Sadoshima J., Li H. J. Proteomics 2011, 74:2498-2509.
113. Fu C., Hu J., Liu T., Ago T., Sadoshima J., Li H. J. Proteome Res. 2008, 7:3789-3802.
114. Zhang X., Huang B., Zhou X., Chen C. Protein Cell 2010, 1:675-687.
115. Paige J.S., Xu G., Stancevic B., Jaffrey S.R. Chem. Biol. 2008, 15:1307-1316.
116. Graumann J., Hubner N.C., Kim J.B., Ko K., Moser M., Kumar C., Cox J., Schöler H., Mann M. Mol. Cell. Proteomics 2008, 7:672-683.
117. Krüger M., Kratchmarova I., Blagoev B., Tseng Y.-H., Kahn C.R., Mann M. Proc. Natl. Acad. Sci. USA 2008, 105:2451-2456.
118. Hanke S., Mann M. Mol. Cell. Proteomics 2009, 8:519-534.
119. Benhar M., Thompson J.W., Moseley M.A., Stamler J.S. Biochemistry 2010, 49:6963-6969.
120. Geiger T., Cox J., Ostasiewicz P., Wisniewski J.R., Mann M. Nat. Methods 2010, 7:383-385.
121. Neubert T.A., Tempst P. Nat. Meth. 2010, 7:361-362.
122. Aggarwal K., Choe L.H., Lee K.H. Proteomics 2005, 5:2297-2308.
123. Hardt M., Witkowska H.E., Webb S., Thomas L.R., Dixon S.E., Hall S.C., Fisher S.J. Anal. Chem. 2005, 77:4947-4954.
124. Ross P.L., Huang Y.N., Marchese J.N., Williamson B., Parker K., Hattan S., Khainovski N., Pillai S., Dey S., Daniels S., Purkayastha S., Juhasz P., Martin S., Bartlet-Jones M., He F., Jacobson A., Pappin D.J. Mol. Cell. Proteomics 2004, 3:1154-1169.
125. Chen Y.-T., Chen C.-L., Chen H.-W., Chung T., Wu C.-C., Chen C.-D., Hsu C.-W., Chen M.-C., Tsui K.-H., Chang P.-L., Chang Y.-S., Yu J.-S. J. Proteome Res. 2010, 9:5803-5815.
126. Ghosh D., Yu H., Tan X.F., Lim T.K., Zubaidah R.M., Tan H.T., Chung M.C.M., Lin Q. J. Proteome Res. 2011, 10:4373-4387.
127. Goetz J.G., Minguet S., Navarro-Lérida I., Lazcano J.J., Samaniego R., Calvo E., Tello M., Osteso-Ibáñez T., Pellinen T., Echarri A., Cerezo A., Klein-Szanto A.J.P., Garcia R., Keely P.J., Sánchez-Mateos P., Cukierman E., Pozo M.A.D. Cell 2011, 146:148-163.
128. Ye H., Sun L., Huang X., Zhang P., Zhao X. Mol. Cell. Biochem. 2010, 343:91-99.
129. Guerreiro N., Gomez-Mancilla B., Williamson B., Minkoff M., Guertin S. Clin. Proteomics 2009, 5:114-124.
130. Lu R., Markowetz F., Unwin R.D., Leek J.T., Airoldi E.M., Macarthur B.D., Lachmann A., Rozov R., Ma'ayan A., Boyer L.A., Troyanskaya O.G., Whetton A.D., Lemischka I.R. Nature 2009, 462:358-362.
131. Glen A., Evans C.A., Gan C.S., Cross S.S., Hamdy F.C., Gibbins J., Lippitt J., Eaton C.L., Noirel J., Wright P.C., Rehman I. Prostate 2010, 70:1313-1332.
132. Murray C.I., Uhrigshardt H., O'meally R.N., Cole R.N., Van Eyk J.E. Mol. Cell. Proteomics 2012, 11. M111.013441.
133. López-Sánchez L.M., López-Pedrera C., Rodríguez-Ariza A. Expert Rev. Proteomics 2012, 9:59-69.
134. Anand P., Stamler J.S. J. Mol. Med. 2012, 90:233-244.
135. Foster M.W., Hess D.T., Stamler J.S. Trends Mol. Med. 2009, 15:391-404.
136. Hansen K.C., Schmitt-Ulms G., Chalkley R.J., Hirsch J., Baldwin M.A., Burlingame A.L. Mol. Cell. Proteomics 2003, 2:299-314.
137. Selemidis S., Dusting G.J., Peshavariya H., Kemp-Harper B.K., Drummond G.R. Cardiovasc. Res. 2007, 75:349-358.
138. Kunieda T., Minamino T., Miura K., Katsuno T., Tateno K., Miyauchi H., Kaneko S., Bradfield C.A., Fitzgerald G.A., Komuro I. Circ. Res. 2008, 102:607-614.
139. Lima B., Forrester M.T., Hess D.T., Stamler J.S. Circ. Res. 2010, 106:633-646.
140. Gonzalez D.R., Beigi F., Treuer A.V., Hare J.M. Proc. Natl. Acad. Sci. USA 2007, 104:20612-20617.
141. Salanova M., Schiffl G., Blottner D. Histochem. Cell Biol. 2009, 132:388-394.
142. Lima B., Lam G.K.W., Xie L., Diesen D.L., Villamizar N., Nienaber J., Messina E., Bowles D., Kontos C.D., Hare J.M., Stamler J.S., Rockman H.A. Proc. Natl. Acad. Sci. USA 2009, 106:6297-6302.
143. Snyder S.H. Science 1992, 257:494-496.
144. Pauli J.R., Ropelle E.R., Cintra D.E., Carvalho-Filho M.A., Moraes J.C., De Souza C.T., Velloso L.A., Carvalheira J.B.C., Saad M.J.A. J. Physiol. 2008, 586:659-671.
145. Uehara T., Nakamura T., Yao D., Shi Z.-Q., Gu Z., Ma Y., Masliah E., Nomura Y., Lipton S.A. Nature 2006, 441:513-517.
146. Tsang A.H.K., Lee Y.-I., Ko H.S., Savitt J.M., Pletnikova O., Troncoso J.C., Dawson V.L., Dawson T.M., Chung K.K.K. Proc. Natl. Acad. Sci. USA 2009, 106:4900-4905.
147. Cho D.-H., Nakamura T., Fang J., Cieplak P., Godzik A., Gu Z., Lipton S.A. Science 2009, 324:102-105.
148. Pilsl A., Winklhofer K.F. Acta Neuropathol. 2012, 123:173-188.
149. Chung K.K.K., Thomas B., Li X., Pletnikova O., Troncoso J.C., Marsh L., Dawson V.L., Dawson T.M. Science 2004, 304:1328-1331.
150. Yonashiro R., Kimijima Y., Shimura T., Kawaguchi K., Fukuda T., Inatome R., Yanagi S. Proc. Natl. Acad. Sci. USA 2012, 109:2382-2387.
151. Eu J.P., Liu L., Zeng M., Stamler J.S. Biochemistry 2000, 39:1040-1047.
152. Liu L., Yan Y., Zeng M., Zhang J., Hanes M.A., Ahearn G., Mcmahon T.J., Dickfeld T., Marshall H.E., Que L.G., Stamler J.S. Cell 2004, 116:617-628.
153. Guo C.-J., Atochina-Vasserman E.N., Abramova E., Foley J.P., Zaman A., Crouch E., Beers M.F., Savani R.C., Gow A.J. PLoS Biol. 2008, 6:e266.
154. Atochina-Vasserman E.N., Gow A.J., Abramova H., Guo C.-J., Tomer Y., Preston A.M., Beck J.M., Beers M.F. J. Immunol. 2009, 182:2277-2287.
155. Yu Z., Kuncewicz T., Dubinsky W.P., Kone B.C. J. Biol. Chem. 2006, 281:9101-9109.
156. Reynaert N.L., Ckless K., Korn S.H., Vos N., Guala A.S., Wouters E.F.M., Van Der Vliet A., Janssen-Heininger Y.M.W. Proc. Natl. Acad. Sci. USA 2004, 101:8945-8950.
157. Kelleher Z.T., Matsumoto A., Stamler J.S., Marshall H.E. J. Biol. Chem. 2007, 282:30667-30672.
158. Into T., Inomata M., Nakashima M., Shibata K.-I., Häcker H., Matsushita K. Mol. Cell. Biol. 2008, 28:1338-1347.
159. Orucevic A., Bechberger J., Green A.M., Shapiro R.A., Billiar T.R., Lala P.K. Int. J. Cancer 1999, 81:889-896.
160. Siegert A., Rosenberg C., Schmitt W.D., Denkert C., Hauptmann S. Br. J. Cancer 2002, 86:1310-1315.
161. Jadeski L.C., Chakraborty C., Lala P.K. Int. J. Cancer 2003, 106:496-504.
162. Weiss J.M., Ridnour L.A., Back T., Hussain S.P., He P., Maciag A.E., Keefer L.K., Murphy W.J., Harris C.C., Wink D.A., Wiltrout R.H. J. Exp. Med. 2010, 207:2455-2467.
163. Barreiro Arcos M.Laura, Gorelik G., Klecha A., Goren N., Cerquetti C., Cremaschi G.A. Nitric Oxide 2003, 8:111-118.
164. Zhang X.M., Xu Q. Melanoma Res. 2001, 11:559-567.
165. Ambs S., Merriam W.G., Bennett W.P., Felley-Bosco E., Ogunfusika M.O., Oser S.M., Klein S., Shields P.G., Billiar T.R., Harris C.C. Cancer Res. 1998, 58:334-341.
166. Wei D., Richardson E.L., Zhu K., Wang L., Le X., He Y., Huang S., Xie K. Cancer Res. 2003, 63:3855-3859.
167. Xie K., Huang S., Dong Z., Juang S.-H., Gutman M., Xie Q.-W., Nathan C., Fidler I.J. J. Exp. Med. 1995, 181:1333-1343.
168. Shi Q., Hales D.B., Emanuele N.V., Emanuele M.A. Alcohol. Clin. Exp. Res. 1998, 22:1754-1762.
169. Iyer A.K.V., Azad N., Wang L., Rojanasakul Y. Nitric Oxide 2008, 19:146-151.
170. Chanvorachote P., Nimmannit U., Stehlik C., Wang L., Jiang B.-H., Ongpipatanakul B., Rojanasakul Y. Cancer Res. 2006, 66:6353-6360.
171. Calmels S., Hainaut P., Ohshima H. Cancer Res. 1997, 57:3365-3369.
172. Guan W., Sha J., Chen X., Xing Y., Yan J., Wang Z. Cancer Lett. 2012, 314:137-146.
173. Jaakkola P., Mole D.R., Tian Y.-M., Wilson M.I., Gielbert J., Gaskell S.J., Kriegsheim A.V., Hebestreit H.F., Mukherji M., Schofield C.J., Maxwell P.H., Pugh C.W., Ratcliffe P.J. Science 2001, 292:468-472.
174. Pi X., Wu Y., Ferguson J.E., Portbury A.L., Patterson C. Proc. Natl. Acad. Sci. USA 2009, 106:5675-5680.
175. Yu C.-X., Li S., Whorton A.R. Mol. Pharmacol. 2005, 68:847-854.
176. Leon-Bollotte L., Subramaniam S., Cauvard O., Plenchette-Colas S., Paul C., Godard C., Martinez-Ruiz A., Legembre P., Jeannin J.F., Bettaieb A. Gastroenterology 2011, 140:2009-2018.
177. Schonhoff C.M., Daou M.-C., Jones S.N., Schiffer C.A., Ross A.H. Biochemistry 2002, 41:13570-13574.
178. Chattopadhyay M., Goswami S., Rodes D.B., Kodela R., Velazquez C.A., Boring D., Crowell J.A., Kashfi K. Cancer Lett. 2010, 298:204-211.
179. Tang Z., Bauer J.A., Morrison B., Lindner D.J. Mol. Cell. Biol. 2006, 26:5588-5594.
180. Ueda K., Valdivia C., Medeiros-Domingo A., Tester D.J., Vatta M., Farrugia G., Ackerman M.J., Makielski J.C. Proc. Natl. Acad. Sci. USA 2008, 105:9355-9360.
181. Gandley R.E., Tyurin V.A., Huang W., Arroyo A., Daftary A., Harger G., Jiang J., Pitt B., Taylor R.N., Hubel C.A., Kagan V.E. Hypertension 2004, 45:21-27.
182. Tyurin V.A., Liu S.-X., Tyurina Y.Y., Sussman N.B., Hubel C.A., Roberts J.M., Taylor R.N., Kagan V.E. Circ. Res. 2001, 88:1210-1215.
183. Mcmahon T.J., Ahearn G.S., Moya M.P., Gow A.J., Huang Y.-C.T., Luchsinger B.P., Nudelman R., Yan Y., Krichman A.D., Bashore T.M., Califf R.M., Singel D.J., Piantadosi C.A., Tapson V.F., Stamler J.S. Proc. Natl. Acad. Sci. USA 2005, 102:14801-14806.
184. Milsom A.B., Jones C.J.H., Goodfellow J., Frenneaux M.P., Peters J.R., James P.E. Diabetologia 2002, 45:1515-1522.
185. Padrón J., Peiró C., Cercas E., Llergo J.L., Sánchez-Ferrer C.F. Biochem. Biophys. Res. Commun. 2000, 271:217-221.
186. Palmer L.A., Doctor A., Chhabra P., Sheram M.L., Laubach V.E., Karlinsey M.Z., Forbes M.S., Macdonald T., Gaston B. J. Clin. Invest. 2007, 117:2592-2601.
187. Mukhopadhyay S., Lee J., Sehgal P.B. Am. J. Physiol. Heart Circ. Physiol. 2008, 295:H1943-H1955.
188. Godoy L.C., Moretti A.I., Jurado M.C., Oxer D., Janiszewski M., Ckless K., Velasco I.T., Laurindo F.R.M., Souza H.P. Shock 2010, 33:626-633.
189. Sun J., Picht E., Ginsburg K.S., Bers D.M., Steenbergen C., Murphy E. Circ. Res. 2006, 98:403-411.
190. Burger D.E., Lu X., Lei M., Xiang F.-L., Hammoud L., Jiang M., Wang H., Jones D.L., Sims S.M., Feng Q. Circulation 2009, 120:1345-1354.
191. Carnes C.A., Janssen P.M.L., Ruehr M.L., Nakayama H., Nakayama T., Haase H., Bauer J.A., Chung M.K., Fearon I.M., Gillinov A.M., Hamlin R.L., Van Wagoner D.R. J. Biol. Chem. 2007, 282:28063-28073.
192. Asada K., Kurokawa J., Furukawa T. J. Biol. Chem. 2009, 284:6014-6020.
193. Bai C.-X., Namekata I., Kurokawa J., Tanaka H., Shigenobu K., Furukawa T. Circ. Res. 2005, 96:64-72.
194. Ding S.-Y., Tribble N.D., Kraft C.A., Markwardt M., Gloyn A.L., Rizzo M.A. Mol. Endocrinol. 2010, 24:171-177.
195. Carvalho-Filho M.A., Ueno M., Hirabara S.M., Seabra A.B., Carvalheira J.B.C., De Oliveira M.G., Velloso L.A., Curi R., Saad M.J.A. Diabetes 2005, 54:959-967.
196. Massy Z.A., Fumeron C., Borderie D., Tuppin P., Nguyen-Khoa T., Benoit M.-O., Jacquot C., Buisson C., Drüeke T.B., Ekindjian O.G., Lacour B., Iliou M.-C. J. Am. Soc. Nephrol. 2004, 15:470-476.
197. Hu S.-Q., Ye J.-S., Zong Y.-Y., Sun C.-C., Liu D.-H., Wu Y.-P., Song T., Zhang G.-Y. J. Biol. Chem. 2012, 287:2364-2377.
198. Numajiri N., Takasawa K., Nishiya T., Tanaka H., Ohno K., Hayakawa W., Asada M., Matsuda H., Azumi K., Kamata H., Nakamura T., Hara H., Minami M., Lipton S.A., Uehara T. Proc. Natl. Acad. Sci. USA 2011, 108:10349-10354.
199. Kwak Y.-D., Ma T., Diao S., Zhang X., Chen Y., Hsu J., Lipton S.A., Masliah E., Xu H., Liao F.-F. Mol. Neurodegener. 2010, 5:49.
200. Nakamura T., Lipton S.A. Neuron 2009, 63:3-6.
201. Tian J., Kim S.F., Hester L., Snyder S.H. Proc. Natl. Acad. Sci. USA 2008, 105:10537-10540.
202. Cheah J.H., Kim S.F., Hester L.D., Clancy K.W., Patterson Iii S.E., Papadopoulos V., Snyder S.H. Neuron 2006, 51:431-440.
203. Hara M.R., Agrawal N., Kim S.F., Cascio M.B., Fujimuro M., Ozeki Y., Takahashi M., Cheah J.H., Tankou S.K., Hester L.D., Ferris C.D., Hayward S.D., Snyder S.H., Sawa A. Nat. Cell Biol. 2005, 7:665-674.
204. Hara M.R., Thomas B., Cascio M.B., Bae B.-I., Hester L.D., Dawson V.L., Dawson T.M., Sawa A., Snyder S.H. Proc. Natl. Acad. Sci. USA 2006, 103:3887-3889.
205. Choi Y.-B., Tenneti L., Le D.A., Ortiz J., Bai G., Chen H.-S.V., Lipton S.A. Nat. Neurosci. 2000, 3:15-21.
206. Huang Y., Man H.-Y., Sekine-Aizawa Y., Han Y., Juluri K., Luo H., Cheah J., Lowenstein C., Huganir R.L., Snyder S.H. Neuron 2005, 46:533-540.
207. Yao D., Gu Z., Nakamura T., Shi Z.-Q., Ma Y., Gaston B., Palmer L.A., Rockenstein E.M., Zhang Z., Masliah E., Uehara T., Lipton S.A. Proc. Natl. Acad. Sci. USA 2004, 101:10810-10814.
208. Selvakumar B., Huganir R.L., Snyder S.H. Proc. Natl. Acad. Sci. USA 2009, 106:16440-16445.
209. Mustafa A.K., Kumar M., Selvakumar B., Ho G.P.H., Ehmsen J.T., Barrow R.K., Amzel L.M., Snyder S.H. Proc. Natl. Acad. Sci. USA 2007, 104:2950-2955.
210. Qu J., Nakamura T., Cao G., Holland E.A., Mckercher S.R., Lipton S.A. Proc. Natl. Acad. Sci. USA 2011, 108:14330-14335.
211. Sliskovic I., Raturi A., Mutus B. J. Biol. Chem. 2005, 280:8733-8741.
212. Nakamura T., Wang L., Wong C.C.L., Scott F.L., Eckelman B.P., Han X., Tzitzilonis C., Meng F., Gu Z., Holland E.A., Clemente A.T., Okamoto S.-I., Salvesen G.S., Riek R., Yates Iii J.R., Lipton S.A. Mol. cell 2010, 39:184-195.
213. Abrams A.J., Farooq A., Wang G. Biochemistry 2011, 50:3405-3407.
214. Fang J., Nakamura T., Cho D.-H., Gu Z., Lipton S.A. Proc. Natl. Acad. Sci. USA 2007, 104:18742-18747.
215. Gu Z., Kaul M., Yan B., Kridel S.J., Cui J., Strongin A., Smith J.W., Liddington R.C., Lipton S.A. Science 2002, 297:1186-1190.
216. Ito G., Ariga H., Nakagawa Y., Iwatsubo T. Biochem. Biophys. Res. Commun. 2006, 339:667-672.
217. Ravi K., Brennan L.A., Levic S., Ross P.A., Black S.M. Proc. Natl. Acad. Sci. USA 2004, 101:2619-2624.
218. Murillo-Carretero M., Torroglosa A., Castro C., Villalobo A., Estrada C. Free Radical Biol. Med. 2009, 46:471-479.
219. Marozkina N.V., Yemen S., Borowitz M., Liu L., Plapp M., Sun F., Islam R., Erdmann-Gilmore P., Townsend R.R., Lichti C.F., Mantri S., Clapp P.W., Randell S.H., Gaston B., Zaman K. Proc. Natl. Acad. Sci. USA 2010, 107:11393-11398.
220. Park H.-S., Huh S.-H., Kim M.-S., Lee S.H., Choi E.-J. Proc. Natl. Acad. Sci. USA 2000, 97:14382-14387.
221. Yasukawa T., Tokunaga E., Ota H., Sugita H., Martyn J.A.J., Kaneki M. J. Biol. Chem. 2005, 280:7511-7518.
222. Mannick J.B., Schonhoff C., Papeta N., Ghafourifar P., Szibor M., Fang K., Gaston B. J. Cell Biol. 2001, 154:1111-1116.
223. Schulze P.C., Liu H., Choe E., Yoshioka J., Shalev A., Bloch K.D., Lee R.T. Arterioscler. Thromb. Vasc. Biol. 2006, 26:2666-2672.
224. Malhotra D., Thimmulappa R.K., Mercado N., Ito K., Kombairaju P., Kumar S., Ma J., Feller-Kopman D., Wise R., Barnes P., Biswal S. J. Clin. Invest. 2011, 121:4289-4302.
225. Lim K.-H., Ancrile B.B., Kashatus D.F., Counter C.M. Nature 2008, 452:646-649.
226. Lander H.M., Hajjar D.P., Hempstead B.L., Mirza U.A., Chait B.T., Campbell S., Quilliam L.A. J. Biol. Chem. 1997, 272:4323-4326.
227. Rahman M.A., Senga T., Ito S., Hyodo T., Hasegawa H., Hamaguchi M. J. Biol. Chem. 2010, 285:3806-3814.
228. Azad N., Vallyathan V., Wang L., Tantishaiyakul V., Stehlik C., Leonard S.S., Rojanasakul Y. J. Biol. Chem. 2006, 281:34124-34134.
229. Li F., Sonveaux P., Rabbani Z.N., Liu S., Yan B., Huang Q., Vujaskovic Z., Dewhirst Mark W., Li C.-Y. Mol. Cell 2007, 26:63-74.
230. Wang G., Moniri N.H., Ozawa K., Stamler J.S., Daaka Y. Proc. Natl. Acad. Sci. USA 2006, 103:1295-1300.
231. Liu L., Xu-Welliver M., Kanugula S., Pegg A.E. Cancer Res. 2002, 62:3037-3043.
232. Sun J., Xin C., Eu J.P., Stamler J.S., Meissner G. Proc. Natl. Acad. Sci. USA 2001, 98:11158-11162.
233. Kang-Decker N., Cao S., Chatterjee S., Yao J., Egan L.J., Semela D., Mukhopadhyay D., Shah V. J. Cell Sci. 2007, 120:492-501.