-
1
-
-
33745813187
-
Reading protein modifications with interaction domains
-
Seet, B. T., Dikic, I., Zhou, M. M. & Pawson, T. Reading protein modifications with interaction domains. Nature Rev. Mol. Cell Biol. 7, 473-483 (2006).
-
(2006)
Nature Rev. Mol. Cell Biol.
, vol.7
, pp. 473-483
-
-
Seet, B.T.1
Dikic, I.2
Zhou, M.M.3
Pawson, T.4
-
2
-
-
36749010218
-
The age of crosstalk: Phosphorylation, ubiquitination, and beyond
-
Hunter, T. The age of crosstalk: phosphorylation, ubiquitination, and beyond. Mol. Cell 28, 730-738 (2007).
-
(2007)
Mol. Cell
, vol.28
, pp. 730-738
-
-
Hunter, T.1
-
3
-
-
34548178909
-
In-gel digestion for mass spectrometric characterization of proteins and proteomes
-
Shevchenko, A., Tomas, H., Havlis, J., Olsen, J. V. & Mann, M. In-gel digestion for mass spectrometric characterization of proteins and proteomes. Nature Protoc. 1, 2856-2860 (2006).
-
(2006)
Nature Protoc.
, vol.1
, pp. 2856-2860
-
-
Shevchenko, A.1
Tomas, H.2
Havlis, J.3
Olsen, J.V.4
Mann, M.5
-
4
-
-
0033051101
-
Direct analysis of protein complexes using mass spectrometry
-
Link, A. J. et al. Direct analysis of protein complexes using mass spectrometry. Nature Biotech. 17, 676-682 (1999).
-
(1999)
Nature Biotech.
, vol.17
, pp. 676-682
-
-
Link, A.J.1
-
5
-
-
0035106351
-
Large-scale analysis of the yeast proteome by multidimensional protein identification technology
-
DOI 10.1038/85686
-
Washburn, M. P., Wolters, D. & Yates, J. R., 3rd. Large-scale analysis of the yeast proteome by multidimensional protein identification technology. Nature Biotech. 19, 242-247 (2001). (Pubitemid 32220565)
-
(2001)
Nature Biotechnology
, vol.19
, Issue.3
, pp. 242-247
-
-
Washburn, M.P.1
Wolters, D.2
Yates, J.R.3
-
6
-
-
33645813378
-
Mass spectrometry and protein analysis
-
Domon, B. & Aebersold, R. Mass spectrometry and protein analysis. Science 312, 212-217 (2006).
-
(2006)
Science
, vol.312
, pp. 212-217
-
-
Domon, B.1
Aebersold, R.2
-
7
-
-
57449099865
-
MaxQuant enables high peptide identification rates, individualized p.p.b-range mass accuracies and proteome-wide protein quantification
-
Cox, J. & Mann, M. MaxQuant enables high peptide identification rates, individualized p.p.b-range mass accuracies and proteome-wide protein quantification. Nature Biotech. 26, 1367-1372 (2008).
-
(2008)
Nature Biotech.
, vol.26
, pp. 1367-1372
-
-
Cox, J.1
Mann, M.2
-
8
-
-
4444335470
-
The ABC's (and XYZ's) of peptide sequencing
-
Steen, H. & Mann, M. The ABC's (and XYZ's) of peptide sequencing. Nature Rev. Mol. Cell Biol. 5, 699-711 (2004).
-
(2004)
Nature Rev. Mol. Cell Biol.
, vol.5
, pp. 699-711
-
-
Steen, H.1
Mann, M.2
-
9
-
-
3042824849
-
A neutral loss activation method for improved phosphopeptide sequence analysis by quadrupole ion trap mass spectrometry
-
Schroeder, M. J., Shabanowitz, J., Schwartz, J. C., Hunt, D. F. & Coon, J. J. A neutral loss activation method for improved phosphopeptide sequence analysis by quadrupole ion trap mass spectrometry. Anal. Chem. 76, 3590-3598 (2004).
-
(2004)
Anal. Chem.
, vol.76
, pp. 3590-3598
-
-
Schroeder, M.J.1
Shabanowitz, J.2
Schwartz, J.C.3
Hunt, D.F.4
Coon, J.J.5
-
10
-
-
34548336772
-
Higher-energy C-trap dissociation for peptide modification analysis
-
Olsen, J. V. et al. Higher-energy C-trap dissociation for peptide modification analysis. Nature Methods 4, 709-712 (2007).
-
(2007)
Nature Methods
, vol.4
, pp. 709-712
-
-
Olsen, J.V.1
-
11
-
-
75149144996
-
A dual pressure linear ion trap orbitrap instrument with very high sequencing speed
-
Olsen, J. V. et al. A dual pressure linear ion trap orbitrap instrument with very high sequencing speed. Mol. Cell. Proteomics 8, 2759-2769 (2009).
-
(2009)
Mol. Cell. Proteomics
, vol.8
, pp. 2759-2769
-
-
Olsen, J.V.1
-
12
-
-
0034133274
-
Electron capture dissociation for structural characterization of multiply charged protein cations
-
Zubarev, R. A. et al. Electron capture dissociation for structural characterization of multiply charged protein cations. Anal. Chem. 72, 563-573 (2000).
-
(2000)
Anal. Chem.
, vol.72
, pp. 563-573
-
-
Zubarev, R.A.1
-
13
-
-
3042765151
-
Novel linear quadrupole ion trap/FT mass spectrometer: Performance characterization and use in the comparative analysis of histone H3 post-translational modifications
-
Syka, J. E. et al. Novel linear quadrupole ion trap/FT mass spectrometer: performance characterization and use in the comparative analysis of histone H3 post-translational modifications. J. Proteome Res. 3, 621-626 (2004).
-
(2004)
J. Proteome Res.
, vol.3
, pp. 621-626
-
-
Syka, J.E.1
-
14
-
-
33644524918
-
Mass spectrometry-based proteomics turns quantitative
-
Ong, S. E. & Mann, M. Mass spectrometry-based proteomics turns quantitative. Nature Chem. Biol. 1, 252-262 (2005).
-
(2005)
Nature Chem. Biol.
, vol.1
, pp. 252-262
-
-
Ong, S.E.1
Mann, M.2
-
15
-
-
0036583926
-
Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics
-
Ong, S. E. et al. Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics. Mol. Cell. Proteomics 1, 376-386 (2002).
-
(2002)
Mol. Cell. Proteomics
, vol.1
, pp. 376-386
-
-
Ong, S.E.1
-
16
-
-
33845329203
-
Functional and quantitative proteomics using SILAC
-
Mann, M. Functional and quantitative proteomics using SILAC. Nature Rev. Mol. Cell Biol. 7, 952-958 (2006).
-
(2006)
Nature Rev. Mol. Cell Biol.
, vol.7
, pp. 952-958
-
-
Mann, M.1
-
17
-
-
47549099572
-
SILAC mouse for quantitative proteomics uncovers kindlin-3 as an essential factor for red blood cell function
-
Kruger, M. et al. SILAC mouse for quantitative proteomics uncovers kindlin-3 as an essential factor for red blood cell function. Cell 134, 353-364 (2008).
-
(2008)
Cell
, vol.134
, pp. 353-364
-
-
Kruger, M.1
-
18
-
-
77952226764
-
Super-SILAC mix for quantitative proteomics of human tumor tissue
-
Geiger, T., Cox, J. Pawel, O., Wisniewski, J. R. & Mann, M. Super-SILAC mix for quantitative proteomics of human tumor tissue. Nature Methods 7, 383-385 (2010).
-
(2010)
Nature Methods
, vol.7
, pp. 383-385
-
-
Geiger, T.1
Cox Pawel J, O.2
Wisniewski, J.R.3
Mann, M.4
-
19
-
-
19944432197
-
Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents
-
Ross, P. L. et al. Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents. Mol. Cell. Proteomics 3, 1154-1169 (2004).
-
(2004)
Mol. Cell. Proteomics
, vol.3
, pp. 1154-1169
-
-
Ross, P.L.1
-
20
-
-
70449412362
-
ITRAQ underestimation in simple and complex mixtures: "The good, the bad and the ugly"
-
Ow, S. Y. et al. iTRAQ underestimation in simple and complex mixtures: "the good, the bad and the ugly". J. Proteome Res. 8, 5347-5355 (2009).
-
(2009)
J. Proteome Res.
, vol.8
, pp. 5347-5355
-
-
Ow, S.Y.1
-
21
-
-
77951820417
-
A robust error model for iTRAQ quantification reveals divergent signaling between oncogenic FLT3 mutants in acute myeloid leukemia
-
17 Dec doi: 10.1074/mcp.M900452-MCP200
-
Zhang, Y. et al. A robust error model for iTRAQ quantification reveals divergent signaling between oncogenic FLT3 mutants in acute myeloid leukemia. Mol. Cell. Proteomics 17 Dec 2009 (doi: 10.1074/mcp.M900452-MCP200).
-
(2009)
Mol. Cell. Proteomics
-
-
Zhang, Y.1
-
22
-
-
0348014635
-
Stable-isotope dimethyl labeling for quantitative proteomics
-
Hsu, J. L., Huang, S. Y., Chow, N. H. & Chen, S. H. Stable-isotope dimethyl labeling for quantitative proteomics. Anal. Chem. 75, 6843-6852 (2003).
-
(2003)
Anal. Chem.
, vol.75
, pp. 6843-6852
-
-
Hsu, J.L.1
Huang, S.Y.2
Chow, N.H.3
Chen, S.H.4
-
23
-
-
64749108158
-
Multiplex peptide stable isotope dimethyl labeling for quantitative proteomics
-
Boersema, P. J., Raijmakers, R., Lemeer, S., Mohammed, S. & Heck, A. J. Multiplex peptide stable isotope dimethyl labeling for quantitative proteomics. Nature Protoc. 4, 484-494 (2009).
-
(2009)
Nature Protoc.
, vol.4
, pp. 484-494
-
-
Boersema, P.J.1
Raijmakers, R.2
Lemeer, S.3
Mohammed, S.4
Heck, A.J.5
-
24
-
-
44449108277
-
Iodoacetamide-induced artifact mimics ubiquitination in mass spectrometry
-
Nielsen, M. L. et al. Iodoacetamide-induced artifact mimics ubiquitination in mass spectrometry. Nature Methods 5, 459-460 (2008).
-
(2008)
Nature Methods
, vol.5
, pp. 459-460
-
-
Nielsen, M.L.1
-
25
-
-
38649095599
-
An assessment of software solutions for the analysis of mass spectrometry based quantitative proteomics data
-
Mueller, L. N., Brusniak, M. Y., Mani, D. R. & Aebersold, R. An assessment of software solutions for the analysis of mass spectrometry based quantitative proteomics data. J. Proteome Res. 7, 51-61 (2008).
-
(2008)
J. Proteome Res.
, vol.7
, pp. 51-61
-
-
Mueller, L.N.1
Brusniak, M.Y.2
Mani, D.R.3
Aebersold, R.4
-
26
-
-
58149263147
-
The phagosomal proteome in interferon-γ-activated macrophages
-
Trost, M. et al. The phagosomal proteome in interferon-γ-activated macrophages. Immunity 30, 143-154 (2009).
-
(2009)
Immunity
, vol.30
, pp. 143-154
-
-
Trost, M.1
-
27
-
-
77449148857
-
An overview of label-free quantitation methods in proteomics by mass spectrometry
-
Wong, J. W. & Cagney, G. An overview of label-free quantitation methods in proteomics by mass spectrometry. Methods Mol. Biol. 604, 273-283.
-
Methods Mol. Biol.
, vol.604
, pp. 273-283
-
-
Wong, J.W.1
Cagney, G.2
-
28
-
-
76949097340
-
Quantitative proteomics reveals subset-specific viral recognition in dendritic cells
-
Luber, C. et al. Quantitative proteomics reveals subset-specific viral recognition in dendritic cells. Immunity 32, 279-289 (2010).
-
(2010)
Immunity
, vol.32
, pp. 279-289
-
-
Luber, C.1
-
29
-
-
55249096894
-
Comprehensive mass-spectrometry-based proteome quantification of haploid versus diploid yeast
-
de Godoy, L. M. et al. Comprehensive mass-spectrometry-based proteome quantification of haploid versus diploid yeast. Nature 455, 1251-1254 (2008).
-
(2008)
Nature
, vol.455
, pp. 1251-1254
-
-
De Godoy, L.M.1
-
30
-
-
68449102172
-
Proteome-wide cellular protein concentrations of the human pathogen Leptospira interrogans
-
Malmstrom, J. et al. Proteome-wide cellular protein concentrations of the human pathogen Leptospira interrogans. Nature 460, 762-765 (2009).
-
(2009)
Nature
, vol.460
, pp. 762-765
-
-
Malmstrom, J.1
-
31
-
-
34548427053
-
Absolute multiplexed quantitative analysis of protein expression during muscle development using QconCAT
-
Rivers, J., Simpson, D. M., Robertson, D. H., Gaskell, S. J. & Beynon, R. J. Absolute multiplexed quantitative analysis of protein expression during muscle development using QconCAT. Mol. Cell. Proteomics 6, 1416-1427 (2007).
-
(2007)
Mol. Cell. Proteomics
, vol.6
, pp. 1416-1427
-
-
Rivers, J.1
Simpson, D.M.2
Robertson, D.H.3
Gaskell, S.J.4
Beynon, R.J.5
-
32
-
-
34249717879
-
A high-quality catalog of the Drosophila melanogaster proteome
-
Brunner, E. et al. A high-quality catalog of the Drosophila melanogaster proteome. Nature Biotech. 25, 576-583 (2007).
-
(2007)
Nature Biotech.
, vol.25
, pp. 576-583
-
-
Brunner, E.1
-
33
-
-
44449162195
-
Absolute SILAC for accurate quantitation of proteins in complex mixtures down to the attomole level
-
Hanke, S., Besir, H., Oesterhelt, D. & Mann, M. Absolute SILAC for accurate quantitation of proteins in complex mixtures down to the attomole level. J. Proteome Res. 7, 1118-1130 (2008).
-
(2008)
J. Proteome Res.
, vol.7
, pp. 1118-1130
-
-
Hanke, S.1
Besir, H.2
Oesterhelt, D.3
Mann, M.4
-
34
-
-
0142215475
-
Global analysis of protein expression in yeast
-
Ghaemmaghami, S. et al. Global analysis of protein expression in yeast. Nature 425, 737-741 (2003).
-
(2003)
Nature
, vol.425
, pp. 737-741
-
-
Ghaemmaghami, S.1
-
35
-
-
0142184341
-
Global analysis of protein localization in budding yeast
-
Huh, W. K. et al. Global analysis of protein localization in budding yeast. Nature 425, 686-691 (2003).
-
(2003)
Nature
, vol.425
, pp. 686-691
-
-
Huh, W.K.1
-
36
-
-
67349266694
-
Universal sample preparation method for proteome analysis
-
Wisniewski, J. R., Zougman, A., Nagaraj, N. & Mann, M. Universal sample preparation method for proteome analysis. Nature Methods 6, 359-362 (2009).
-
(2009)
Nature Methods
, vol.6
, pp. 359-362
-
-
Wisniewski, J.R.1
Zougman, A.2
Nagaraj, N.3
Mann, M.4
-
37
-
-
70549084975
-
Directed mass spectrometry: Towards hypothesis-driven proteomics
-
Schmidt, A., Claassen, M. & Aebersold, R. Directed mass spectrometry: towards hypothesis-driven proteomics. Curr. Opin. Chem. Biol. 13, 510-517 (2009).
-
(2009)
Curr. Opin. Chem. Biol.
, vol.13
, pp. 510-517
-
-
Schmidt, A.1
Claassen, M.2
Aebersold, R.3
-
38
-
-
34250722602
-
Multiple reaction monitoring for robust quantitative proteomic analysis of cellular signaling networks
-
DOI 10.1073/pnas.0608638104
-
Wolf-Yadlin, A., Hautaniemi, S., Lauffenburger, D. A. & White, F. M. Multiple reaction monitoring for robust quantitative proteomic analysis of cellular signaling networks. Proc. Natl Acad. Sci. USA 104, 5860-5865 (2007). (Pubitemid 47175624)
-
(2007)
Proceedings of the National Academy of Sciences of the United States of America
, vol.104
, Issue.14
, pp. 5860-5865
-
-
Wolf-Yadlin, A.1
Hautaniemi, S.2
Lauffenburger, D.A.3
White, F.M.4
-
39
-
-
64549125924
-
Multiple reaction monitoring for quantitative biomarker analysis in proteomics and metabolomics
-
Kitteringham, N. R., Jenkins, R. E., Lane, C. S., Elliott, V. L. & Park, B. K. Multiple reaction monitoring for quantitative biomarker analysis in proteomics and metabolomics. J. Chromatogr. B Analyt. Technol. Biomed. Life Sci. 877, 1229-1239 (2009).
-
(2009)
J. Chromatogr. B Analyt. Technol. Biomed. Life Sci.
, vol.877
, pp. 1229-1239
-
-
Kitteringham, N.R.1
Jenkins, R.E.2
Lane, C.S.3
Elliott, V.L.4
Park, B.K.5
-
40
-
-
66749165277
-
A sensitive mass spectrometric method for hypothesis-driven detection of peptide post-translational modifications: Multiple reaction monitoring-initiated detection and sequencing (MIDAS)
-
Unwin, R. D., Griffiths, J. R. & Whetton, A. D. A sensitive mass spectrometric method for hypothesis-driven detection of peptide post-translational modifications: multiple reaction monitoring-initiated detection and sequencing (MIDAS). Nature Protoc. 4, 870-877 (2009).
-
(2009)
Nature Protoc.
, vol.4
, pp. 870-877
-
-
Unwin, R.D.1
Griffiths, J.R.2
Whetton, A.D.3
-
41
-
-
68749094119
-
Full dynamic range proteome analysis of S. cerevisiae by targeted proteomics
-
Picotti, P., Bodenmiller, B., Mueller, L. N., Domon, B. & Aebersold, R. Full dynamic range proteome analysis of S. cerevisiae by targeted proteomics. Cell 138, 795-806 (2009).
-
(2009)
Cell
, vol.138
, pp. 795-806
-
-
Picotti, P.1
Bodenmiller, B.2
Mueller, L.N.3
Domon, B.4
Aebersold, R.5
-
42
-
-
67349208911
-
Bioinformatics analysis of mass spectrometry-based proteomics data sets
-
Kumar, C. & Mann, M. Bioinformatics analysis of mass spectrometry-based proteomics data sets. FEBS Lett. 583, 1703-1712 (2009).
-
(2009)
FEBS Lett.
, vol.583
, pp. 1703-1712
-
-
Kumar, C.1
Mann, M.2
-
43
-
-
77449146854
-
Target-decoy search strategy for mass spectrometry-based proteomics
-
Elias, J. E. & Gygi, S. P. Target-decoy search strategy for mass spectrometry-based proteomics. Methods Mol. Biol. 604, 55-71.
-
Methods Mol. Biol.
, vol.604
, pp. 55-71
-
-
Elias, J.E.1
Gygi, S.P.2
-
44
-
-
0034069495
-
Gene ontology: Tool for the unification of biology. The gene ontology consortium
-
Ashburner, M. et al. Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nature Genet. 25, 25-29 (2000).
-
(2000)
Nature Genet.
, vol.25
, pp. 25-29
-
-
Ashburner, M.1
-
45
-
-
0345863935
-
The KEGG resource for deciphering the genome
-
Kanehisa, M., Goto, S., Kawashima, S., Okuno, Y. & Hattori, M. The KEGG resource for deciphering the genome. Nucleic Acids Res. 32, D277-D280 (2004).
-
(2004)
Nucleic Acids Res.
, vol.32
-
-
Kanehisa, M.1
Goto, S.2
Kawashima, S.3
Okuno, Y.4
Hattori, M.5
-
46
-
-
33745800293
-
Interpreting the protein language using proteomics
-
Jensen, O. N. Interpreting the protein language using proteomics. Nature Rev. Mol. Cell Biol. 7, 391-403 (2006).
-
(2006)
Nature Rev. Mol. Cell Biol.
, vol.7
, pp. 391-403
-
-
Jensen, O.N.1
-
47
-
-
35848970747
-
Mapping protein post-translational modifications with mass spectrometry
-
Witze, E. S., Old, W. M., Resing, K. A. & Ahn, N. G. Mapping protein post-translational modifications with mass spectrometry. Nature Methods 4, 798-806 (2007).
-
(2007)
Nature Methods
, vol.4
, pp. 798-806
-
-
Witze, E.S.1
Old, W.M.2
Resing, K.A.3
Ahn, N.G.4
-
48
-
-
70350247861
-
Modification-specific proteomics: Strategies for characterization of post-translational modifications using enrichment techniques
-
Zhao, Y. & Jensen, O. N. Modification-specific proteomics: strategies for characterization of post-translational modifications using enrichment techniques. Proteomics 9, 4632-4641 (2009).
-
(2009)
Proteomics
, vol.9
, pp. 4632-4641
-
-
Zhao, Y.1
Jensen, O.N.2
-
49
-
-
65249137629
-
Global and site-specific quantitative phosphoproteomics: Principles and applications
-
Macek, B., Mann, M. & Olsen, J. V. Global and site-specific quantitative phosphoproteomics: principles and applications. Annu. Rev. Pharmacol. Toxicol. 49, 199-221 (2009).
-
(2009)
Annu. Rev. Pharmacol. Toxicol.
, vol.49
, pp. 199-221
-
-
MacEk, B.1
Mann, M.2
Olsen, J.V.3
-
50
-
-
68949212379
-
Lysine acetylation targets protein complexes and co-regulates major cellular functions
-
Choudhary, C. et al. Lysine acetylation targets protein complexes and co-regulates major cellular functions. Science 325, 834-840 (2009).
-
(2009)
Science
, vol.325
, pp. 834-840
-
-
Choudhary, C.1
-
51
-
-
33750456519
-
Global, in vivo, and site-specific phosphorylation dynamics in signaling networks
-
Olsen, J. V. et al. Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. Cell 127, 635-648 (2006).
-
(2006)
Cell
, vol.127
, pp. 635-648
-
-
Olsen, J.V.1
-
52
-
-
33749853607
-
A probability-based approach for high-throughput protein phosphorylation analysis and site localization
-
Beausoleil, S. A., Villen, J., Gerber, S. A., Rush, J. & Gygi, S. P. A probability-based approach for high-throughput protein phosphorylation analysis and site localization. Nature Biotech. 24, 1285-1292 (2006).
-
(2006)
Nature Biotech.
, vol.24
, pp. 1285-1292
-
-
Beausoleil, S.A.1
Villen, J.2
Gerber, S.A.3
Rush, J.4
Gygi, S.P.5
-
53
-
-
44149105911
-
PHOSIDA (phosphorylation site database): Management, structural and evolutionary investigation, and prediction of phosphosites
-
Gnad, F. et al. PHOSIDA (phosphorylation site database): management, structural and evolutionary investigation, and prediction of phosphosites. Genome Biol. 8, R250 (2007).
-
(2007)
Genome Biol.
, vol.8
-
-
Gnad, F.1
-
54
-
-
77951644400
-
Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis
-
Olsen, J. V. et al. Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis. Sci. Signal. 3, ra3 (2010).
-
(2010)
Sci. Signal.
, vol.3
-
-
Olsen, J.V.1
-
55
-
-
18744375196
-
Identifying and quantifying in vivo methylation sites by heavy methyl SILAC
-
Ong, S. E., Mittler, G. & Mann, M. Identifying and quantifying in vivo methylation sites by heavy methyl SILAC. Nature Methods 1, 119-126 (2004).
-
(2004)
Nature Methods
, vol.1
, pp. 119-126
-
-
Ong, S.E.1
Mittler, G.2
Mann, M.3
-
56
-
-
33746992118
-
Substrate and functional diversity of lysine acetylation revealed by a proteomics survey
-
Kim, S. C. et al. Substrate and functional diversity of lysine acetylation revealed by a proteomics survey. Mol. Cell 23, 607-618 (2006).
-
(2006)
Mol. Cell
, vol.23
, pp. 607-618
-
-
Kim, S.C.1
-
57
-
-
77149120797
-
Acetylation of metabolic enzymes coordinates carbon source utilization and metabolic flux
-
Wang, Q. et al. Acetylation of metabolic enzymes coordinates carbon source utilization and metabolic flux. Science 327, 1004-1007.
-
Science
, vol.327
, pp. 1004-1007
-
-
Wang, Q.1
-
58
-
-
77149148756
-
Regulation of cellular metabolism by protein lysine acetylation
-
Zhao, S. et al. Regulation of cellular metabolism by protein lysine acetylation. Science 327, 1000-1004.
-
Science
, vol.327
, pp. 1000-1004
-
-
Zhao, S.1
-
59
-
-
0041706156
-
A proteomics approach to understanding protein ubiquitination
-
Peng, J. et al. A proteomics approach to understanding protein ubiquitination. Nature Biotech. 21, 921-926 (2003).
-
(2003)
Nature Biotech.
, vol.21
, pp. 921-926
-
-
Peng, J.1
-
60
-
-
67649173012
-
System-wide changes to SUMO modifications in response to heat shock
-
Golebiowski, F. et al. System-wide changes to SUMO modifications in response to heat shock. Sci. Signal. 2, ra24 (2009).
-
(2009)
Sci. Signal.
, vol.2
-
-
Golebiowski, F.1
-
61
-
-
33745360876
-
Automated identification of SUMOylation sites using mass spectrometry and SUMmOn pattern recognition software
-
Pedrioli, P. G. et al. Automated identification of SUMOylation sites using mass spectrometry and SUMmOn pattern recognition software. Nature Methods 3, 533-539 (2006).
-
(2006)
Nature Methods
, vol.3
, pp. 533-539
-
-
Pedrioli, P.G.1
-
62
-
-
39049093685
-
In vivo identification of human small ubiquitin-like modifier polymerization sites by high accuracy mass spectrometry and an in vitro to in vivo strategy
-
Matic, I. et al. In vivo identification of human small ubiquitin-like modifier polymerization sites by high accuracy mass spectrometry and an in vitro to in vivo strategy. Mol. Cell. Proteomics 7, 132-144 (2008).
-
(2008)
Mol. Cell. Proteomics
, vol.7
, pp. 132-144
-
-
Matic, I.1
-
64
-
-
15844412409
-
FLICE, a novel FADD-homologous ICE/CED-3-like protease, is recruited to the CD95 (Fas/APO-1) death-inducing signaling complex
-
Muzio, M. et al. FLICE, a novel FADD-homologous ICE/CED-3-like protease, is recruited to the CD95 (Fas/APO-1) death-inducing signaling complex. Cell 85, 817-827 (1996).
-
(1996)
Cell
, vol.85
, pp. 817-827
-
-
Muzio, M.1
-
65
-
-
0036198435
-
Phosphoproteome analysis by mass spectrometry and its application to Saccharomyces cerevisiae
-
Ficarro, S. B. et al. Phosphoproteome analysis by mass spectrometry and its application to Saccharomyces cerevisiae. Nature Biotech. 20, 301-305 (2002).
-
(2002)
Nature Biotech.
, vol.20
, pp. 301-305
-
-
Ficarro, S.B.1
-
66
-
-
55849118087
-
Quantitative phosphoproteomics by mass spectrometry: Past, present, and future
-
Nita-Lazar, A., Saito-Benz, H. & White, F. M. Quantitative phosphoproteomics by mass spectrometry: past, present, and future. Proteomics 8, 4433-4443 (2008).
-
(2008)
Proteomics
, vol.8
, pp. 4433-4443
-
-
Nita-Lazar, A.1
Saito-Benz, H.2
White, F.M.3
-
67
-
-
70349321247
-
Receptor tyrosine kinase signaling: A view from quantitative proteomics
-
Dengjel, J., Kratchmarova, I. & Blagoev, B. Receptor tyrosine kinase signaling: a view from quantitative proteomics. Mol. Biosyst. 5, 1112-1121 (2009).
-
(2009)
Mol. Biosyst.
, vol.5
, pp. 1112-1121
-
-
Dengjel, J.1
Kratchmarova, I.2
Blagoev, B.3
-
68
-
-
4444371652
-
Temporal analysis of phosphotyrosine-dependent signaling networks by quantitative proteomics
-
Blagoev, B., Ong, S. E., Kratchmarova, I. & Mann, M. Temporal analysis of phosphotyrosine-dependent signaling networks by quantitative proteomics. Nature Biotech. 22, 1139-1145 (2004).
-
(2004)
Nature Biotech.
, vol.22
, pp. 1139-1145
-
-
Blagoev, B.1
Ong, S.E.2
Kratchmarova, I.3
Mann, M.4
-
69
-
-
33749332751
-
Temporal dynamics of tyrosine phosphorylation in insulin signaling
-
Schmelzle, K., Kane, S., Gridley, S., Lienhard, G. E. & White, F. M. Temporal dynamics of tyrosine phosphorylation in insulin signaling. Diabetes 55, 2171-2179 (2006).
-
(2006)
Diabetes
, vol.55
, pp. 2171-2179
-
-
Schmelzle, K.1
Kane, S.2
Gridley, S.3
Lienhard, G.E.4
White, F.M.5
-
70
-
-
40649117198
-
Dissection of the insulin signaling pathway via quantitative phosphoproteomics
-
Kruger, M. et al. Dissection of the insulin signaling pathway via quantitative phosphoproteomics. Proc. Natl Acad. Sci. USA 105, 2451-2456 (2008).
-
(2008)
Proc. Natl Acad. Sci. USA
, vol.105
, pp. 2451-2456
-
-
Kruger, M.1
-
71
-
-
15944377809
-
Quantitative phosphoproteomics applied to the yeast pheromone signaling pathway
-
Gruhler, A. et al. Quantitative phosphoproteomics applied to the yeast pheromone signaling pathway. Mol. Cell. Proteomics 4, 310-327 (2005).
-
(2005)
Mol. Cell. Proteomics
, vol.4
, pp. 310-327
-
-
Gruhler, A.1
-
72
-
-
70350462371
-
Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions
-
Mayya, V. et al. Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions. Sci. Signal. 2, ra46 (2009).
-
(2009)
Sci. Signal.
, vol.2
-
-
Mayya, V.1
-
73
-
-
72149101924
-
Cell-specific information processing in segregating populations of Eph receptor ephrin-expressing cells
-
Jorgensen, C. et al. Cell-specific information processing in segregating populations of Eph receptor ephrin-expressing cells. Science 326, 1502-1509 (2009).
-
(2009)
Science
, vol.326
, pp. 1502-1509
-
-
Jorgensen, C.1
-
74
-
-
20344363684
-
Mechanism of divergent growth factor effects in mesenchymal stem cell differentiation
-
Kratchmarova, I., Blagoev, B., Haack-Sorensen, M., Kassem, M. & Mann, M. Mechanism of divergent growth factor effects in mesenchymal stem cell differentiation. Science 308, 1472-1477 (2005).
-
(2005)
Science
, vol.308
, pp. 1472-1477
-
-
Kratchmarova, I.1
Blagoev, B.2
Haack-Sorensen, M.3
Kassem, M.4
Mann, M.5
-
75
-
-
42649132889
-
Stable isotope labeling by amino acids in cell culture (SILAC) and proteome quantitation of mouse embryonic stem cells to a depth of 5,111 proteins
-
Graumann, J. et al. Stable isotope labeling by amino acids in cell culture (SILAC) and proteome quantitation of mouse embryonic stem cells to a depth of 5,111 proteins. Mol. Cell. Proteomics 7, 672-683 (2008).
-
(2008)
Mol. Cell. Proteomics
, vol.7
, pp. 672-683
-
-
Graumann, J.1
-
76
-
-
67449107495
-
Stable isotope labeling by amino acids in cell culture (SILAC) and quantitative comparison of the membrane proteomes of self-renewing and differentiating human embryonic stem cells
-
Prokhorova, T. A. et al. Stable isotope labeling by amino acids in cell culture (SILAC) and quantitative comparison of the membrane proteomes of self-renewing and differentiating human embryonic stem cells. Mol. Cell. Proteomics 8, 959-970 (2009).
-
(2009)
Mol. Cell. Proteomics
, vol.8
, pp. 959-970
-
-
Prokhorova, T.A.1
-
77
-
-
67849106825
-
Phosphorylation dynamics during early differentiation of human embryonic stem cells
-
Van Hoof, D. et al. Phosphorylation dynamics during early differentiation of human embryonic stem cells. Cell Stem Cell 5, 214-226 (2009).
-
(2009)
Cell Stem Cell
, vol.5
, pp. 214-226
-
-
Van Hoof, D.1
-
78
-
-
67849121794
-
Phosphoproteomic analysis of human embryonic stem cells
-
Brill, L. M. et al. Phosphoproteomic analysis of human embryonic stem cells. Cell Stem Cell 5, 204-213 (2009).
-
(2009)
Cell Stem Cell
, vol.5
, pp. 204-213
-
-
Brill, L.M.1
-
79
-
-
59049086847
-
Human embryonic stem cell phosphoproteome revealed by electron transfer dissociation tandem mass spectrometry
-
Swaney, D. L., Wenger, C. D., Thomson, J. A. & Coon, J. J. Human embryonic stem cell phosphoproteome revealed by electron transfer dissociation tandem mass spectrometry. Proc. Natl Acad. Sci. USA 106, 995-1000 (2009).
-
(2009)
Proc. Natl Acad. Sci. USA
, vol.106
, pp. 995-1000
-
-
Swaney, D.L.1
Wenger, C.D.2
Thomson, J.A.3
Coon, J.J.4
-
80
-
-
49449085504
-
A quantitative atlas of mitotic phosphorylation
-
Dephoure, N. et al. A quantitative atlas of mitotic phosphorylation. Proc. Natl Acad. Sci. USA 105, 10762-10767 (2008).
-
(2008)
Proc. Natl Acad. Sci. USA
, vol.105
, pp. 10762-10767
-
-
Dephoure, N.1
-
81
-
-
43149125189
-
Different phosphorylation states of the anaphase promoting complex in response to antimitotic drugs: A quantitative proteomic analysis
-
Steen, J. A. et al. Different phosphorylation states of the anaphase promoting complex in response to antimitotic drugs: a quantitative proteomic analysis. Proc. Natl Acad. Sci. USA 105, 6069-6074 (2008).
-
(2008)
Proc. Natl Acad. Sci. USA
, vol.105
, pp. 6069-6074
-
-
Steen, J.A.1
-
82
-
-
34249947699
-
ATM and ATR substrate analysis reveals extensive protein networks responsive to DNA damage
-
Matsuoka, S. et al. ATM and ATR substrate analysis reveals extensive protein networks responsive to DNA damage. Science 316, 1160-1166 (2007).
-
(2007)
Science
, vol.316
, pp. 1160-1166
-
-
Matsuoka, S.1
-
83
-
-
38049184488
-
Profiling of UV-induced ATM/ATR signaling pathways
-
Stokes, M. P. et al. Profiling of UV-induced ATM/ATR signaling pathways. Proc. Natl Acad. Sci. USA 104, 19855-19860 (2007).
-
(2007)
Proc. Natl Acad. Sci. USA
, vol.104
, pp. 19855-19860
-
-
Stokes, M.P.1
-
84
-
-
48349138726
-
Kinase-selective enrichment enables quantitative phosphoproteomics of the kinome across the cell cycle
-
Daub, H. et al. Kinase-selective enrichment enables quantitative phosphoproteomics of the kinome across the cell cycle. Mol. Cell 31, 438-448 (2008).
-
(2008)
Mol. Cell
, vol.31
, pp. 438-448
-
-
Daub, H.1
-
85
-
-
70349974263
-
Quantitative analysis of the human spindle phosphoproteome at distinct mitotic stages
-
Malik, R. et al. Quantitative analysis of the human spindle phosphoproteome at distinct mitotic stages. J. Proteome Res. 8, 4553-4563 (2009).
-
(2009)
J. Proteome Res.
, vol.8
, pp. 4553-4563
-
-
Malik, R.1
-
86
-
-
0035902180
-
Oncogenic kinase signalling
-
Blume-Jensen, P. & Hunter, T. Oncogenic kinase signalling. Nature 411, 355-365 (2001).
-
(2001)
Nature
, vol.411
, pp. 355-365
-
-
Blume-Jensen, P.1
Hunter, T.2
-
87
-
-
33644684486
-
Chemical rescue of a mutant enzyme in living cells
-
Qiao, Y., Molina, H., Pandey, A., Zhang, J. & Cole, P. A. Chemical rescue of a mutant enzyme in living cells. Science 311, 1293-1297 (2006).
-
(2006)
Science
, vol.311
, pp. 1293-1297
-
-
Qiao, Y.1
Molina, H.2
Pandey, A.3
Zhang, J.4
Cole, P.A.5
-
88
-
-
38649119730
-
Signaling networks assembled by oncogenic EGFR and c-Met
-
Guo, A. et al. Signaling networks assembled by oncogenic EGFR and c-Met. Proc. Natl Acad. Sci. USA 105, 692-697 (2008).
-
(2008)
Proc. Natl Acad. Sci. USA
, vol.105
, pp. 692-697
-
-
Guo, A.1
-
89
-
-
55249083335
-
Identification of c-Src tyrosine kinase substrates using mass spectrometry and peptide microarrays
-
Amanchy, R. et al. Identification of c-Src tyrosine kinase substrates using mass spectrometry and peptide microarrays. J. Proteome Res. 7, 3900-3910 (2008).
-
(2008)
J. Proteome Res.
, vol.7
, pp. 3900-3910
-
-
Amanchy, R.1
-
90
-
-
36849065315
-
Global survey of phosphotyrosine signaling identifies oncogenic kinases in lung cancer
-
Rikova, K. et al. Global survey of phosphotyrosine signaling identifies oncogenic kinases in lung cancer. Cell 131, 1190-1203 (2007).
-
(2007)
Cell
, vol.131
, pp. 1190-1203
-
-
Rikova, K.1
-
91
-
-
61349150575
-
Solid tumor proteome and phosphoproteome analysis by high resolution mass spectrometry
-
Zanivan, S. et al. Solid tumor proteome and phosphoproteome analysis by high resolution mass spectrometry. J. Proteome Res. 7, 5314-5326 (2008).
-
(2008)
J. Proteome Res.
, vol.7
, pp. 5314-5326
-
-
Zanivan, S.1
-
92
-
-
63649083462
-
Functional proteomics identifies targets of phosphorylation by B-Raf signaling in melanoma
-
Old, W. M. et al. Functional proteomics identifies targets of phosphorylation by B-Raf signaling in melanoma. Mol. Cell 34, 115-131 (2009).
-
(2009)
Mol. Cell
, vol.34
, pp. 115-131
-
-
Old, W.M.1
-
93
-
-
69249137477
-
Endocytosis and signalling: Intertwining molecular networks
-
Sorkin, A. & von Zastrow, M. Endocytosis and signalling: intertwining molecular networks. Nature Rev. Mol. Cell Biol. 10, 609-622 (2009).
-
(2009)
Nature Rev. Mol. Cell Biol.
, vol.10
, pp. 609-622
-
-
Sorkin, A.1
Von Zastrow, M.2
-
94
-
-
70350013557
-
Mislocalized activation of oncogenic RTKs switches downstream signaling outcomes
-
Choudhary, C. et al. Mislocalized activation of oncogenic RTKs switches downstream signaling outcomes. Mol. Cell 36, 326-339 (2009).
-
(2009)
Mol. Cell
, vol.36
, pp. 326-339
-
-
Choudhary, C.1
-
95
-
-
34948875686
-
Quantitative chemical proteomics reveals mechanisms of action of clinical ABL kinase inhibitors
-
Bantscheff, M. et al. Quantitative chemical proteomics reveals mechanisms of action of clinical ABL kinase inhibitors. Nature Biotech. 25, 1035-1044 (2007).
-
(2007)
Nature Biotech.
, vol.25
, pp. 1035-1044
-
-
Bantscheff, M.1
-
96
-
-
38049018155
-
A quantitative analysis of kinase inhibitor selectivity
-
Karaman, M. W. et al. A quantitative analysis of kinase inhibitor selectivity. Nature Biotech. 26, 127-132 (2008).
-
(2008)
Nature Biotech.
, vol.26
, pp. 127-132
-
-
Karaman, M.W.1
-
97
-
-
70349624519
-
Proteomics strategy for quantitative protein interaction profiling in cell extracts
-
Sharma, K. et al. Proteomics strategy for quantitative protein interaction profiling in cell extracts. Nature Methods 6, 741-744 (2009).
-
(2009)
Nature Methods
, vol.6
, pp. 741-744
-
-
Sharma, K.1
-
98
-
-
72449196261
-
Global effects of kinase inhibitors on signaling networks revealed by quantitative phosphoproteomics
-
Pan, C., Olsen, J. V., Daub, H. & Mann, M. Global effects of kinase inhibitors on signaling networks revealed by quantitative phosphoproteomics. Mol. Cell. Proteomics 8, 2796-2808 (2009).
-
(2009)
Mol. Cell. Proteomics
, vol.8
, pp. 2796-2808
-
-
Pan, C.1
Olsen, J.V.2
Daub, H.3
Mann, M.4
-
99
-
-
69249240179
-
Characterization of the rapamycin-sensitive phosphoproteome reveals that Sch9 is a central coordinator of protein synthesis
-
Huber, A. et al. Characterization of the rapamycin-sensitive phosphoproteome reveals that Sch9 is a central coordinator of protein synthesis. Genes Dev. 23, 1929-1943 (2009).
-
(1929)
Genes Dev.
, vol.23
, pp. 2009
-
-
Huber, A.1
-
100
-
-
52649120850
-
Investigation of protein-tyrosine phosphatase 1B function by quantitative proteomics
-
Mertins, P. et al. Investigation of protein-tyrosine phosphatase 1B function by quantitative proteomics. Mol. Cell. Proteomics 7, 1763-1777 (2008).
-
(2008)
Mol. Cell. Proteomics
, vol.7
, pp. 1763-1777
-
-
Mertins, P.1
-
101
-
-
70349621112
-
Systems-wide analysis of a phosphatase knock-down by quantitative proteomics and phosphoproteomics
-
Hilger, M., Bonaldi, T., Gnad, F. & Mann, M. Systems-wide analysis of a phosphatase knock-down by quantitative proteomics and phosphoproteomics. Mol. Cell. Proteomics 8, 1908-1920 (2009).
-
(2009)
Mol. Cell. Proteomics
, vol.8
, pp. 1908-1920
-
-
Hilger, M.1
Bonaldi, T.2
Gnad, F.3
Mann, M.4
-
102
-
-
34547499407
-
Proteome-wide identification of in vivo targets of DNA damage checkpoint kinases
-
Smolka, M. B., Albuquerque, C. P., Chen, S. H. & Zhou, H. Proteome-wide identification of in vivo targets of DNA damage checkpoint kinases. Proc. Natl Acad. Sci. USA 104, 10364-10369 (2007).
-
(2007)
Proc. Natl Acad. Sci. USA
, vol.104
, pp. 10364-10369
-
-
Smolka, M.B.1
Albuquerque, C.P.2
Chen, S.H.3
Zhou, H.4
-
103
-
-
70349546862
-
Global analysis of Cdk1 substrate phosphorylation sites provides insights into evolution
-
Holt, L. J. et al. Global analysis of Cdk1 substrate phosphorylation sites provides insights into evolution. Science 325, 1682-1686 (2009).
-
(2009)
Science
, vol.325
, pp. 1682-1686
-
-
Holt, L.J.1
-
104
-
-
33846554088
-
Modeling HER2 effects on cell behavior from mass spectrometry phosphotyrosine data
-
Kumar, N., Wolf-Yadlin, A., White, F. M. & Lauffenburger, D. A. Modeling HER2 effects on cell behavior from mass spectrometry phosphotyrosine data. PLoS Comput. Biol. 3, e4 (2007).
-
(2007)
PLoS Comput. Biol.
, vol.3
-
-
Kumar, N.1
Wolf-Yadlin, A.2
White, F.M.3
Lauffenburger, D.A.4
-
105
-
-
34250743173
-
Systematic discovery of in vivo phosphorylation networks
-
Linding, R. et al. Systematic discovery of in vivo phosphorylation networks. Cell 129, 1415-1426 (2007).
-
(2007)
Cell
, vol.129
, pp. 1415-1426
-
-
Linding, R.1
-
106
-
-
55749111058
-
Linear motif atlas for phosphorylation-dependent signaling
-
Miller, M. L. et al. Linear motif atlas for phosphorylation-dependent signaling. Sci. Signal. 1, ra2 (2008).
-
(2008)
Sci. Signal.
, vol.1
-
-
Miller, M.L.1
-
107
-
-
70349526350
-
Comparative analysis reveals conserved protein phosphorylation networks implicated in multiple diseases
-
Tan, C. S. et al. Comparative analysis reveals conserved protein phosphorylation networks implicated in multiple diseases. Sci. Signal. 2, ra39 (2009).
-
(2009)
Sci. Signal.
, vol.2
-
-
Tan, C.S.1
-
108
-
-
34547131554
-
Analysis of protein complexes using mass spectrometry
-
Gingras, A. C., Gstaiger, M., Raught, B. & Aebersold, R. Analysis of protein complexes using mass spectrometry. Nature Rev. Mol. Cell Biol. 8, 645-654 (2007).
-
(2007)
Nature Rev. Mol. Cell Biol.
, vol.8
, pp. 645-654
-
-
Gingras, A.C.1
Gstaiger, M.2
Raught, B.3
Aebersold, R.4
-
109
-
-
49549121813
-
High confidence determination of specific protein-protein interactions using quantitative mass spectrometry
-
Vermeulen, M., Hubner, N. C. & Mann, M. High confidence determination of specific protein-protein interactions using quantitative mass spectrometry. Curr. Opin. Biotechnol. 19, 331-337 (2008).
-
(2008)
Curr. Opin. Biotechnol.
, vol.19
, pp. 331-337
-
-
Vermeulen, M.1
Hubner, N.C.2
Mann, M.3
-
110
-
-
58549085778
-
An integrated workflow for charting the human interaction proteome: Insights into the PP2A system
-
Glatter, T., Wepf, A., Aebersold, R. & Gstaiger, M. An integrated workflow for charting the human interaction proteome: insights into the PP2A system. Mol. Syst. Biol. 5, 237 (2009).
-
(2009)
Mol. Syst. Biol.
, vol.5
, pp. 237
-
-
Glatter, T.1
Wepf, A.2
Aebersold, R.3
Gstaiger, M.4
-
111
-
-
59149096171
-
A PP2A phosphatase high density interaction network identifies a novel striatin-interacting phosphatase and kinase complex linked to the cerebral cavernous malformation 3 (CCM3) protein
-
Goudreault, M. et al. A PP2A phosphatase high density interaction network identifies a novel striatin-interacting phosphatase and kinase complex linked to the cerebral cavernous malformation 3 (CCM3) protein. Mol. Cell. Proteomics 8, 157-171 (2009).
-
(2009)
Mol. Cell. Proteomics
, vol.8
, pp. 157-171
-
-
Goudreault, M.1
-
112
-
-
73349139547
-
Cell fate decisions are specified by the dynamic ERK interactome
-
von Kriegsheim, A. et al. Cell fate decisions are specified by the dynamic ERK interactome. Nature Cell Biol. 11, 1458-1464 (2009).
-
(2009)
Nature Cell Biol.
, vol.11
, pp. 1458-1464
-
-
Von Kriegsheim, A.1
-
113
-
-
0037337310
-
A proteomics strategy to elucidate functional protein-protein interactions applied to EGF signaling
-
Blagoev, B. et al. A proteomics strategy to elucidate functional protein-protein interactions applied to EGF signaling. Nature Biotech. 21, 315-318 (2003).
-
(2003)
Nature Biotech.
, vol.21
, pp. 315-318
-
-
Blagoev, B.1
-
114
-
-
33746905531
-
Phosphotyrosine interactome of the ErbB-receptor kinase family
-
Schulze, W. X., Deng, L. & Mann, M. Phosphotyrosine interactome of the ErbB-receptor kinase family. Mol. Syst. Biol. 1, 2005.0008 (2005).
-
(2005)
Mol. Syst. Biol.
, vol.1
, pp. 20050008
-
-
Schulze, W.X.1
Deng, L.2
Mann, M.3
-
115
-
-
63049091804
-
The phosphotyrosine interactome of the insulin receptor family and its substrates IRS-1 and IRS-2
-
Hanke, S. & Mann, M. The phosphotyrosine interactome of the insulin receptor family and its substrates IRS-1 and IRS-2. Mol. Cell. Proteomics 8, 519-534 (2009).
-
(2009)
Mol. Cell. Proteomics
, vol.8
, pp. 519-534
-
-
Hanke, S.1
Mann, M.2
-
116
-
-
64649100982
-
Host cell interactome of tyrosine-phosphorylated bacterial proteins
-
Selbach, M. et al. Host cell interactome of tyrosine-phosphorylated bacterial proteins. Cell Host Microbe 5, 397-403 (2009).
-
(2009)
Cell Host Microbe
, vol.5
, pp. 397-403
-
-
Selbach, M.1
-
117
-
-
36749100886
-
Toward a high-resolution view of nuclear dynamics
-
Trinkle-Mulcahy, L. & Lamond, A. I. Toward a high-resolution view of nuclear dynamics. Science 318, 1402-1407 (2007).
-
(2007)
Science
, vol.318
, pp. 1402-1407
-
-
Trinkle-Mulcahy, L.1
Lamond, A.I.2
-
118
-
-
73149110595
-
Quantitative proteomic analysis of single pancreatic islets
-
Waanders, L. F. et al. Quantitative proteomic analysis of single pancreatic islets. Proc. Natl Acad. Sci. USA 106, 18902-18907 (2009).
-
(2009)
Proc. Natl Acad. Sci. USA
, vol.106
, pp. 18902-18907
-
-
Waanders, L.F.1
-
119
-
-
33846133955
-
Computational prediction of proteotypic peptides for quantitative proteomics
-
Mallick, P. et al. Computational prediction of proteotypic peptides for quantitative proteomics. Nature Biotech. 25, 125-131 (2007).
-
(2007)
Nature Biotech.
, vol.25
, pp. 125-131
-
-
Mallick, P.1
-
120
-
-
33645654439
-
Performance evaluation of a hybrid linear ion trap/orbitrap mass spectrometer
-
Makarov, A. et al. Performance evaluation of a hybrid linear ion trap/orbitrap mass spectrometer. Anal. Chem. 78, 2113-2120 (2006).
-
(2006)
Anal. Chem.
, vol.78
, pp. 2113-2120
-
-
Makarov, A.1
-
121
-
-
29244448703
-
Parts per million mass accuracy on an Orbitrap mass spectrometer via lock mass injection into a C-trap
-
Olsen, J. V. et al. Parts per million mass accuracy on an Orbitrap mass spectrometer via lock mass injection into a C-trap. Mol. Cell. Proteomics 4, 2010-2021 (2005).
-
(2005)
Mol. Cell. Proteomics
, vol.4
, pp. 2010-2021
-
-
Olsen, J.V.1
-
122
-
-
34147173417
-
On the proper use of mass accuracy in proteomics
-
Zubarev, R. & Mann, M. On the proper use of mass accuracy in proteomics. Mol. Cell. Proteomics 6, 377-381 (2007).
-
(2007)
Mol. Cell. Proteomics
, vol.6
, pp. 377-381
-
-
Zubarev, R.1
Mann, M.2
-
123
-
-
57449099068
-
Precision proteomics: The case for high resolution and high mass accuracy
-
Mann, M. & Kelleher, N. L. Precision proteomics: the case for high resolution and high mass accuracy. Proc. Natl Acad. Sci. USA 105, 18132-18138 (2008).
-
(2008)
Proc. Natl Acad. Sci. USA
, vol.105
, pp. 18132-18138
-
-
Mann, M.1
Kelleher, N.L.2
-
124
-
-
77951651658
-
Extensive crosstalk between O-GlcNAcylation and phosphorylation regulates cytokinesis
-
Wang, Z. et al. Extensive crosstalk between O-GlcNAcylation and phosphorylation regulates cytokinesis. Sci. Signal. 3, ra2 (2010).
-
(2010)
Sci. Signal.
, vol.3
-
-
Wang, Z.1
-
125
-
-
70349972517
-
Global analysis of the yeast osmotic stress response by quantitative proteomics
-
Soufi, B. et al. Global analysis of the yeast osmotic stress response by quantitative proteomics. Mol. Biosyst. 5, 1337-1346 (2009).
-
(2009)
Mol. Biosyst.
, vol.5
, pp. 1337-1346
-
-
Soufi, B.1
-
126
-
-
55849147636
-
Quantitative phosphoproteome analysis of a mouse liver cell line reveals specificity of phosphatase inhibitors
-
Pan, C., Gnad, F., Olsen, J. V. & Mann, M. Quantitative phosphoproteome analysis of a mouse liver cell line reveals specificity of phosphatase inhibitors. Proteomics 8, 4534-4546 (2008).
-
(2008)
Proteomics
, vol.8
, pp. 4534-4546
-
-
Pan, C.1
Gnad, F.2
Olsen, J.V.3
Mann, M.4
|