-
1
-
-
15544383394
-
Embryonic stem cells: Prospects for developmental biology and cell therapy
-
Wobus, A. M., and Boheler, K. R. (2005) Embryonic stem cells: prospects for developmental biology and cell therapy. Physiol. Rev. 85, 635-678
-
(2005)
Physiol. Rev
, vol.85
, pp. 635-678
-
-
Wobus, A.M.1
Boheler, K.R.2
-
2
-
-
8144222265
-
The maturing of the human embryonic stem cell transcriptome profile
-
Robson, P. (2004) The maturing of the human embryonic stem cell transcriptome profile. Trends Biotechnol. 22, 609-612
-
(2004)
Trends Biotechnol
, vol.22
, pp. 609-612
-
-
Robson, P.1
-
3
-
-
33750565705
-
More than 40,000 transcripts, including novel and noncoding transcripts, in mouse embryonic stem cells
-
Araki, R., Fukumura, R., Sasaki, N., Kasama, Y., Suzuki, N., Takahashi, H., Tabata, Y., Saito, T., and Abe, M. (2006) More than 40,000 transcripts, including novel and noncoding transcripts, in mouse embryonic stem cells. Stem Cells (Dayton) 24, 2522-2528
-
(2006)
Stem Cells (Dayton)
, vol.24
, pp. 2522-2528
-
-
Araki, R.1
Fukumura, R.2
Sasaki, N.3
Kasama, Y.4
Suzuki, N.5
Takahashi, H.6
Tabata, Y.7
Saito, T.8
Abe, M.9
-
4
-
-
34547624303
-
Genome-wide maps of chromatin state in pluripotent and lineage-committed cells
-
Mikkelsen, T. S., Ku, M., Jaffe, D. B., Issac, B., Lieberman, E., Giannoukos, G., Alvarez, P., Brockman, W., Kim, T. K., Koche, R. P., Lee, W., Mendenhall, E., O'Donovan, A., Presser, A., Russ, C., Xie, X., Meissner, A., Wernig, M., Jaenisch, R., Nusbaum, C., Lander, E. S., and Bernstein, B. E. (2007) Genome-wide maps of chromatin state in pluripotent and lineage-committed cells. Nature 448, 553-560
-
(2007)
Nature
, vol.448
, pp. 553-560
-
-
Mikkelsen, T.S.1
Ku, M.2
Jaffe, D.B.3
Issac, B.4
Lieberman, E.5
Giannoukos, G.6
Alvarez, P.7
Brockman, W.8
Kim, T.K.9
Koche, R.P.10
Lee, W.11
Mendenhall, E.12
O'Donovan, A.13
Presser, A.14
Russ, C.15
Xie, X.16
Meissner, A.17
Wernig, M.18
Jaenisch, R.19
Nusbaum, C.20
Lander, E.S.21
Bernstein, B.E.22
more..
-
5
-
-
0037435030
-
Mass spectrometry-based proteomics
-
Aebersold, R., and Mann, M. (2003) Mass spectrometry-based proteomics. Nature 422, 198-207
-
(2003)
Nature
, vol.422
, pp. 198-207
-
-
Aebersold, R.1
Mann, M.2
-
6
-
-
34547572949
-
Is proteomics the new genomics?
-
Cox, J., and Mann, M. (2007) Is proteomics the new genomics? Cell 130, 395-398
-
(2007)
Cell
, vol.130
, pp. 395-398
-
-
Cox, J.1
Mann, M.2
-
7
-
-
34547896274
-
Concise review: Trends in stem cell proteomics
-
Baharvand, H., Fathi, A., van Hoof, D., and Salekdeh, G. H. (2007) Concise review: trends in stem cell proteomics. Stem Cells (Dayton) 25, 1888-1903
-
(2007)
Stem Cells (Dayton)
, vol.25
, pp. 1888-1903
-
-
Baharvand, H.1
Fathi, A.2
van Hoof, D.3
Salekdeh, G.H.4
-
8
-
-
20144386804
-
Large-scale identification of proteins expressed in mouse embryonic stem cells
-
Nagano, K., Taoka, M., Yamauchi, Y., Itagaki, C., Shinkawa, T., Nunomura, K, Okamura, N., Takahashi, N., Izumi, T., and Isobe, T. (2005) Large-scale identification of proteins expressed in mouse embryonic stem cells. Proteomics 5, 1346-1361
-
(2005)
Proteomics
, vol.5
, pp. 1346-1361
-
-
Nagano, K.1
Taoka, M.2
Yamauchi, Y.3
Itagaki, C.4
Shinkawa, T.5
Nunomura, K.6
Okamura, N.7
Takahashi, N.8
Izumi, T.9
Isobe, T.10
-
9
-
-
33746306545
-
A quest for human and mouse embryonic stem cell-specific proteins
-
van Hoof, D., Passier, R., Ward-Van Oostwaard, D., Pinkse, M. W., Heck, A. J., Mummery, C. L., and Krijgsveld, J. (2006) A quest for human and mouse embryonic stem cell-specific proteins. Mol. Cell. Proteomics 5, 1261-1273
-
(2006)
Mol. Cell. Proteomics
, vol.5
, pp. 1261-1273
-
-
van Hoof, D.1
Passier, R.2
Ward-Van Oostwaard, D.3
Pinkse, M.W.4
Heck, A.J.5
Mummery, C.L.6
Krijgsveld, J.7
-
10
-
-
33644524918
-
Mass spectrometry-based proteomics turns quantitative
-
Ong, S. E., and Mann, M. (2005) Mass spectrometry-based proteomics turns quantitative. Nat. Chem. Biol. 1, 252-262
-
(2005)
Nat. Chem. Biol
, vol.1
, pp. 252-262
-
-
Ong, S.E.1
Mann, M.2
-
11
-
-
0036583926
-
Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics
-
Ong, S. E., Blagoev, B., Kratchmarova, I., Kristensen, D. B., Steen, H., Pandey, A., and Mann, M. (2002) Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics. Mol. Cell. Proteomics 1, 376-386
-
(2002)
Mol. Cell. Proteomics
, vol.1
, pp. 376-386
-
-
Ong, S.E.1
Blagoev, B.2
Kratchmarova, I.3
Kristensen, D.B.4
Steen, H.5
Pandey, A.6
Mann, M.7
-
12
-
-
33845329203
-
Functional and quantitative proteomics using SILAC
-
Mann, M. (2006) Functional and quantitative proteomics using SILAC. Nat. Rev. 7, 952-958
-
(2006)
Nat. Rev
, vol.7
, pp. 952-958
-
-
Mann, M.1
-
13
-
-
0037240172
-
A subset of ES-cell-derived neural cells marked by gene targeting
-
Xian, H. Q., McNichols, E., St Clair, A., and Gottlieb, D. I. (2003) A subset of ES-cell-derived neural cells marked by gene targeting. Stem Cells (Dayton) 21, 41-49
-
(2003)
Stem Cells (Dayton)
, vol.21
, pp. 41-49
-
-
Xian, H.Q.1
McNichols, E.2
St Clair, A.3
Gottlieb, D.I.4
-
14
-
-
0021355340
-
A method for the quantitative recovery of protein in dilute solution in the presence of detergents and lipids
-
Wessel, D., and Flugge, U. I. (1984) A method for the quantitative recovery of protein in dilute solution in the presence of detergents and lipids. Anal. Biochem. 138, 141-143
-
(1984)
Anal. Biochem
, vol.138
, pp. 141-143
-
-
Wessel, D.1
Flugge, U.I.2
-
15
-
-
0037317228
-
Stop and go extraction tips for matrix-assisted laser desorption/ionization, nanoelectrospray, and LC/MS sample pretreatment in proteomics
-
Rappsilber, J., Ishihama, Y., and Mann, M. (2003) Stop and go extraction tips for matrix-assisted laser desorption/ionization, nanoelectrospray, and LC/MS sample pretreatment in proteomics. Anal. Chem. 75, 663-670
-
(2003)
Anal. Chem
, vol.75
, pp. 663-670
-
-
Rappsilber, J.1
Ishihama, Y.2
Mann, M.3
-
16
-
-
0021100690
-
Accurate transcription initiation by RNA polymerase II in a soluble extract from isolated mammalian nuclei
-
Dignam, J. D., Labovitz, R. M., and Roeder, R. G. (1983) Accurate transcription initiation by RNA polymerase II in a soluble extract from isolated mammalian nuclei. Nucleic Acids Res. 11, 1475-1489
-
(1983)
Nucleic Acids Res
, vol.11
, pp. 1475-1489
-
-
Dignam, J.D.1
Labovitz, R.M.2
Roeder, R.G.3
-
17
-
-
34548178909
-
In-gel digestion for mass spectrometric characterization of proteins and proteomes
-
Shevchenko, A., Tomas, H., Havlis, J., Olsen, J. V., and Mann, M. (2006) In-gel digestion for mass spectrometric characterization of proteins and proteomes. Nat. Protoc. 1, 2856-2860
-
(2006)
Nat. Protoc
, vol.1
, pp. 2856-2860
-
-
Shevchenko, A.1
Tomas, H.2
Havlis, J.3
Olsen, J.V.4
Mann, M.5
-
18
-
-
3042815334
-
Trypsin cleaves exclusively C-terminal to arginine and lysine residues
-
Olsen, J. V., Ong, S. E., and Mann, M. (2004) Trypsin cleaves exclusively C-terminal to arginine and lysine residues. Mol. Cell. Proteomics 3, 608-614
-
(2004)
Mol. Cell. Proteomics
, vol.3
, pp. 608-614
-
-
Olsen, J.V.1
Ong, S.E.2
Mann, M.3
-
19
-
-
29244448703
-
Parts per million mass accuracy on an Orbitrap mass spectrometer via lock mass injection into a C-trap
-
Olsen, J. V., de Godoy, L M., Li, G., Macek, B., Mortensen, P., Pesch, R., Makarov, A., Lange, O., Horning, S., and Mann, M. (2005) Parts per million mass accuracy on an Orbitrap mass spectrometer via lock mass injection into a C-trap. Mol. Cell. Proteomics 4, 2010-2021
-
(2005)
Mol. Cell. Proteomics
, vol.4
, pp. 2010-2021
-
-
Olsen, J.V.1
de Godoy, L.M.2
Li, G.3
Macek, B.4
Mortensen, P.5
Pesch, R.6
Makarov, A.7
Lange, O.8
Horning, S.9
Mann, M.10
-
20
-
-
42649130292
-
Bioinformatics algorithms and software enabling whole proteome quantitation applied to diploid vs. haploid yeast cells
-
American Society for Mass Spectrometry, Santa Fe, NM
-
Cox, J., de Godoy, L., de Souza, G., Olsen, J. V., Ren, S., and Mann, M. (2007) Bioinformatics algorithms and software enabling whole proteome quantitation applied to diploid vs. haploid yeast cells, in 55th ASMS Conference on Mass Spectrometry, Indianapolis, June 3-7, 2007, ThOB pm-04:10, American Society for Mass Spectrometry, Santa Fe, NM
-
(2007)
55th ASMS Conference on Mass Spectrometry, Indianapolis, June 3-7, 2007, ThOB pm-04:10
-
-
Cox, J.1
de Godoy, L.2
de Souza, G.3
Olsen, J.V.4
Ren, S.5
Mann, M.6
-
21
-
-
34547131554
-
Analysis of protein complexes using mass spectrometry
-
Gingras, A. C., Gstaiger, M., Raught, B., and Aebersold, R. (2007) Analysis of protein complexes using mass spectrometry. Nat. Rev. 8, 645-654
-
(2007)
Nat. Rev
, vol.8
, pp. 645-654
-
-
Gingras, A.C.1
Gstaiger, M.2
Raught, B.3
Aebersold, R.4
-
22
-
-
3042818018
-
The International Protein Index: An integrated database for proteomics experiments
-
Kersey, P. J., Duarte, J., Williams, A., Karavidopoulou, Y., Birney, E., and Apweiler, R. (2004) The International Protein Index: an integrated database for proteomics experiments. Proteomics 4, 1985-1988
-
(2004)
Proteomics
, vol.4
, pp. 1985-1988
-
-
Kersey, P.J.1
Duarte, J.2
Williams, A.3
Karavidopoulou, Y.4
Birney, E.5
Apweiler, R.6
-
23
-
-
0036209134
-
Qscore: An algorithm for evaluating SEQUEST database search results
-
Moore, R. E., Young, M. K., and Lee, T. D. (2002) Qscore: an algorithm for evaluating SEQUEST database search results. J. Am. Soc. Mass Spectrom. 13, 378-386
-
(2002)
J. Am. Soc. Mass Spectrom
, vol.13
, pp. 378-386
-
-
Moore, R.E.1
Young, M.K.2
Lee, T.D.3
-
24
-
-
0037277179
-
Evaluation of multidimensional chromatography coupled with tandem mass spectrometry (LC/LC-MS/MS) for large-scale protein analysis: The yeast proteome
-
Peng, J., Elias, J. E., Thoreen, C. C., Licklider, L. J., and Gygi, S. P. (2003) Evaluation of multidimensional chromatography coupled with tandem mass spectrometry (LC/LC-MS/MS) for large-scale protein analysis: the yeast proteome. J. Proteome Res. 2, 43-50
-
(2003)
J. Proteome Res
, vol.2
, pp. 43-50
-
-
Peng, J.1
Elias, J.E.2
Thoreen, C.C.3
Licklider, L.J.4
Gygi, S.P.5
-
25
-
-
0033434080
-
Probability-based protein identification by searching sequence databases using mass spectrometry data
-
Perkins, D. N., Pappin, D. J., Cressy, D. M., and Cottrell, J. S. (1999) Probability-based protein identification by searching sequence databases using mass spectrometry data. Electrophoresis 20, 3551-3567
-
(1999)
Electrophoresis
, vol.20
, pp. 3551-3567
-
-
Perkins, D.N.1
Pappin, D.J.2
Cressy, D.M.3
Cottrell, J.S.4
-
26
-
-
34147173417
-
On the proper use of mass accuracy in proteomics
-
Zubarev, R., and Mann, M. (2007) On the proper use of mass accuracy in proteomics. Mol. Cell Proteomics 6, 377-381
-
(2007)
Mol. Cell Proteomics
, vol.6
, pp. 377-381
-
-
Zubarev, R.1
Mann, M.2
-
27
-
-
0036169031
-
Genesis: Cluster analysis of microarray data
-
Sturn, A., Quackenbush, J., and Trajanoski, Z. (2002) Genesis: cluster analysis of microarray data. Bioinformatics (Oxf.) 18, 207-208
-
(2002)
Bioinformatics (Oxf.)
, vol.18
, pp. 207-208
-
-
Sturn, A.1
Quackenbush, J.2
Trajanoski, Z.3
-
28
-
-
24044440971
-
BINGO: A Cytoscape plugin to assess overrepresentation of gene ontology categories in biological networks
-
Maere, S., Heymans, K., and Kuiper, M. (2006) BINGO: a Cytoscape plugin to assess overrepresentation of gene ontology categories in biological networks. Biointotmatics (Oxf.) 21, 3448-3449
-
(2006)
Biointotmatics (Oxf.)
, vol.21
, pp. 3448-3449
-
-
Maere, S.1
Heymans, K.2
Kuiper, M.3
-
29
-
-
0242490780
-
Cytoscape: A software environment for integrated models of biomolecular interaction networks
-
Shannon, P., Markiel, A., Ozier, O., Baliga, N. S., Wang, J. T., Ramage, D., Amin, N., Schwikowski, B., and Ideker, T. (2003) Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res. 13, 2498-2504
-
(2003)
Genome Res
, vol.13
, pp. 2498-2504
-
-
Shannon, P.1
Markiel, A.2
Ozier, O.3
Baliga, N.S.4
Wang, J.T.5
Ramage, D.6
Amin, N.7
Schwikowski, B.8
Ideker, T.9
-
30
-
-
33750364830
-
The human urinary proteome contains more than 1500 proteins, including a large proportion of membrane proteins
-
Adachi, J., Kumar, C., Zhang, Y., Olsen, J. V., and Mann, M. (2006) The human urinary proteome contains more than 1500 proteins, including a large proportion of membrane proteins. Genome Biol. 7, R80
-
(2006)
Genome Biol
, vol.7
-
-
Adachi, J.1
Kumar, C.2
Zhang, Y.3
Olsen, J.V.4
Mann, M.5
-
31
-
-
5344244656
-
-
R Development Core Team , R Foundation for Statistical Computing, Vienna, Austria
-
R Development Core Team (2004) R: a Language and Environment for Statisbcal Computing, R Foundation for Statistical Computing, Vienna, Austria
-
(2004)
R: A Language and Environment for Statisbcal Computing
-
-
-
32
-
-
34147197561
-
Gene function in early mouse embryonic stem cell differentiation
-
Hallesellasse Sene, K., Porter, C. J., Palidwor, G., Perez-Iraixeta, C., Muro, E. M., Campbell, P. A., Rudnicki, M. A., and Andrade-Navarro, M. A. (2007) Gene function in early mouse embryonic stem cell differentiation. BMC Genomics 8, 85
-
(2007)
BMC Genomics
, vol.8
, pp. 85
-
-
Hallesellasse Sene, K.1
Porter, C.J.2
Palidwor, G.3
Perez-Iraixeta, C.4
Muro, E.M.5
Campbell, P.A.6
Rudnicki, M.A.7
Andrade-Navarro, M.A.8
-
33
-
-
0344845415
-
BMP induction of Id proteins suppresses differentiation and sustains embryonic stem cell self-renewal in collaboration with STAT3
-
Ying, Q. L., Nichols, J., Chambers, I., and Smith, A. (2003) BMP induction of Id proteins suppresses differentiation and sustains embryonic stem cell self-renewal in collaboration with STAT3. Cell 115, 281-292
-
(2003)
Cell
, vol.115
, pp. 281-292
-
-
Ying, Q.L.1
Nichols, J.2
Chambers, I.3
Smith, A.4
-
34
-
-
34548356772
-
An experimental correction for arginineto-proline conversion artifacts in SILAC-based quantitative proteomics
-
van Hoof, D., Pinkse, M. W., Oostwaard, D. W., Mummery, C. L., Heck, A. J., and Krijgsveld, J. (2007) An experimental correction for arginineto-proline conversion artifacts in SILAC-based quantitative proteomics. Nat. Methods 4, 677-678
-
(2007)
Nat. Methods
, vol.4
, pp. 677-678
-
-
van Hoof, D.1
Pinkse, M.W.2
Oostwaard, D.W.3
Mummery, C.L.4
Heck, A.J.5
Krijgsveld, J.6
-
35
-
-
0034095972
-
The current state of two-dimensional electrophoresis with immobilized pH gradients
-
Gorg, A., Obermaier, C., Boguth, G., Harder, A., Scheibe, B., Wildgruber, R., and Weiss, W. (2000) The current state of two-dimensional electrophoresis with immobilized pH gradients. Electrophoresis 21, 1037-1053
-
(2000)
Electrophoresis
, vol.21
, pp. 1037-1053
-
-
Gorg, A.1
Obermaier, C.2
Boguth, G.3
Harder, A.4
Scheibe, B.5
Wildgruber, R.6
Weiss, W.7
-
36
-
-
29144480261
-
Added value for tandem mass spectrometry shotgun proteomics data validation through isoelectric focusing of peptides
-
Holler, M., Ye, M., Michel, P. E., Morier, P., Stalder, D., Junger, M. A., Aebersold, R., Reymond, F., and Rossier, J. S. (2005) Added value for tandem mass spectrometry shotgun proteomics data validation through isoelectric focusing of peptides. J. Proteome Res. 4, 2273-2282
-
(2005)
J. Proteome Res
, vol.4
, pp. 2273-2282
-
-
Holler, M.1
Ye, M.2
Michel, P.E.3
Morier, P.4
Stalder, D.5
Junger, M.A.6
Aebersold, R.7
Reymond, F.8
Rossier, J.S.9
-
37
-
-
33750631580
-
Efficient fractionation and improved protein identification by peptide OFFGEL electrophoresis
-
Horth, P., Miller, C. A., Preckel, T., and Wenz, C. (2006) Efficient fractionation and improved protein identification by peptide OFFGEL electrophoresis. Mol. Cell Proteomics 5, 1968-1974
-
(2006)
Mol. Cell Proteomics
, vol.5
, pp. 1968-1974
-
-
Horth, P.1
Miller, C.A.2
Preckel, T.3
Wenz, C.4
-
38
-
-
0025291459
-
Oct-4: A germline-specific transcription factor mapping to the mouse t-complex
-
Scholer, H. R., Drawler, G. R., Balling, R., Rohdewohld, H., and Gruss, P. (1990) Oct-4: a germline-specific transcription factor mapping to the mouse t-complex. EMBO J. 9, 2185-2195
-
(1990)
EMBO J
, vol.9
, pp. 2185-2195
-
-
Scholer, H.R.1
Drawler, G.R.2
Balling, R.3
Rohdewohld, H.4
Gruss, P.5
-
39
-
-
0028808183
-
Developmental-specific activity of the FGF-4 enhancer requires the synergistic action of Sox2 and Oct-3
-
Yuan, H., Corbi, N., Basillco, C., and Dailey, L. (1995) Developmental-specific activity of the FGF-4 enhancer requires the synergistic action of Sox2 and Oct-3. Genes Dev. 9, 2635-2645
-
(1995)
Genes Dev
, vol.9
, pp. 2635-2645
-
-
Yuan, H.1
Corbi, N.2
Basillco, C.3
Dailey, L.4
-
40
-
-
0038143611
-
Functional expression cloning of Nanog, a pluripotency sustaining factor in embryonic stem cells
-
Chambers, I., Colby, D., Robertson, M., Nichols, J., Lee, S., Tweedie, S., and Smith, A. (2003) Functional expression cloning of Nanog, a pluripotency sustaining factor in embryonic stem cells. Cell 113, 643-655
-
(2003)
Cell
, vol.113
, pp. 643-655
-
-
Chambers, I.1
Colby, D.2
Robertson, M.3
Nichols, J.4
Lee, S.5
Tweedie, S.6
Smith, A.7
-
41
-
-
0037806031
-
The homeoprotein Nanog is required for maintenance of pluripotency in mouse epiblast and ES cells
-
Mitsui, K., Tokuzawa, Y., Itoh, H., Segawa, K., Murakami, M., Takahashi, K., Maruyama, M., Maeda, M., and Yamanaka, S. (2003) The homeoprotein Nanog is required for maintenance of pluripotency in mouse epiblast and ES cells. Cell 113, 631-642
-
(2003)
Cell
, vol.113
, pp. 631-642
-
-
Mitsui, K.1
Tokuzawa, Y.2
Itoh, H.3
Segawa, K.4
Murakami, M.5
Takahashi, K.6
Maruyama, M.7
Maeda, M.8
Yamanaka, S.9
-
42
-
-
33749173803
-
Sall4 modulates embryonic stem cell pluripotency and early embryonic development by the transcriptional regulation of Pou5f1
-
Zhang, J., Tam, W. L., Tong, G. Q., Wu, Q., Chan, H. Y., Soh, B. S., Lou, Y., Yang, J., Ma, Y., Chai, L., Ng, H. H., Lufkin, T., Robson, P., and Lim, B. (2006) Sall4 modulates embryonic stem cell pluripotency and early embryonic development by the transcriptional regulation of Pou5f1. Nat. Cell Biol. 8, 1114-1123
-
(2006)
Nat. Cell Biol
, vol.8
, pp. 1114-1123
-
-
Zhang, J.1
Tam, W.L.2
Tong, G.Q.3
Wu, Q.4
Chan, H.Y.5
Soh, B.S.6
Lou, Y.7
Yang, J.8
Ma, Y.9
Chai, L.10
Ng, H.H.11
Lufkin, T.12
Robson, P.13
Lim, B.14
-
43
-
-
33845993214
-
Dppa2 and Dppa4 are closely linked SAP motif genes restricted to pluripotent cells and the germ line
-
Maldonado-Saldivia, J., van den Bergen, J., Krouskos, M., Gilchrist, M., Lee, C., Li, R., Sinclair, A. H., Surani, M. A., and Western, P. S. (2007) Dppa2 and Dppa4 are closely linked SAP motif genes restricted to pluripotent cells and the germ line. Stem Calls (Dayton) 25, 19-28
-
(2007)
Stem Calls (Dayton)
, vol.25
, pp. 19-28
-
-
Maldonado-Saldivia, J.1
van den Bergen, J.2
Krouskos, M.3
Gilchrist, M.4
Lee, C.5
Li, R.6
Sinclair, A.H.7
Surani, M.A.8
Western, P.S.9
-
44
-
-
0037130961
-
A stem cell molecular signature
-
Ivanova, N. B., Dimos, J. T., Schaniel, C., Hackney, J. A., Moore, K. A., and Lemischka, I. R. (2002) A stem cell molecular signature. Science 298, 601-604
-
(2002)
Science
, vol.298
, pp. 601-604
-
-
Ivanova, N.B.1
Dimos, J.T.2
Schaniel, C.3
Hackney, J.A.4
Moore, K.A.5
Lemischka, I.R.6
-
45
-
-
0037131389
-
Stemness: Transcriptional profiling of embryonic and adult stem cells
-
Ramalho-Santos, M., Yoon, S., Matsuzaki, Y., Mulligan, R. C., and Melton, D. A. (2002) "Stemness": transcriptional profiling of embryonic and adult stem cells. Science 298, 597-600
-
(2002)
Science
, vol.298
, pp. 597-600
-
-
Ramalho-Santos, M.1
Yoon, S.2
Matsuzaki, Y.3
Mulligan, R.C.4
Melton, D.A.5
-
46
-
-
34447528757
-
New cell lines from mouse epiblast share defining features with human embryonic stem cells
-
Tesar, P. J., Chenoweth, J. G., Brook, F. A., Davies, T. J., Evans, E. P., Mack, D. L., Gardner, R. L., and McKay, R. D. (2007) New cell lines from mouse epiblast share defining features with human embryonic stem cells. Nature 448, 196-199
-
(2007)
Nature
, vol.448
, pp. 196-199
-
-
Tesar, P.J.1
Chenoweth, J.G.2
Brook, F.A.3
Davies, T.J.4
Evans, E.P.5
Mack, D.L.6
Gardner, R.L.7
McKay, R.D.8
-
47
-
-
33846165487
-
Absolute protein expression profiling estimates the relative contributions of transcriptional and translational regulation
-
Lu, P., Vogel, C., Wang, R., Yao, X., and Marcotte, E. M. (2007) Absolute protein expression profiling estimates the relative contributions of transcriptional and translational regulation. Nat. Biotechnol. 25, 117-124
-
(2007)
Nat. Biotechnol
, vol.25
, pp. 117-124
-
-
Lu, P.1
Vogel, C.2
Wang, R.3
Yao, X.4
Marcotte, E.M.5
-
48
-
-
33947301272
-
Epigenetic signatures of stem-cell identity
-
Spivakov, M., and Fisher, A. G. (2007) Epigenetic signatures of stem-cell identity. Nat. Rev. Genet. 8, 263-271
-
(2007)
Nat. Rev. Genet
, vol.8
, pp. 263-271
-
-
Spivakov, M.1
Fisher, A.G.2
-
49
-
-
0035839136
-
Translating the histone code
-
Jenuwein, T., and Allis, C. D. (2001) Translating the histone code. Science 293, 1074-1080
-
(2001)
Science
, vol.293
, pp. 1074-1080
-
-
Jenuwein, T.1
Allis, C.D.2
-
50
-
-
33847076849
-
Chromatin modifications and their function
-
Kouzarides, T. (2007) Chromatin modifications and their function. Cell 128, 693-705
-
(2007)
Cell
, vol.128
, pp. 693-705
-
-
Kouzarides, T.1
-
51
-
-
33750838708
-
Anisotropic mechanosensing by mesenchymal stem cells
-
Kurpinski, K., Chu, J., Hashi, C., and Li, S. (2006) Anisotropic mechanosensing by mesenchymal stem cells. Proc. Natl. Acad Sci. U. S. A. 103, 16095-16100
-
(2006)
Proc. Natl. Acad Sci. U. S. A
, vol.103
, pp. 16095-16100
-
-
Kurpinski, K.1
Chu, J.2
Hashi, C.3
Li, S.4
-
52
-
-
0346874342
-
Proteomic characterization of the human centrosome by protein correlation profiling
-
Andersen, J. S., Wilkinson, C. J., Mayor, T., Mortensen, P., Nigg, E. A., and Mann, M. (2003) Proteomic characterization of the human centrosome by protein correlation profiling. Nature 426, 570-574
-
(2003)
Nature
, vol.426
, pp. 570-574
-
-
Andersen, J.S.1
Wilkinson, C.J.2
Mayor, T.3
Mortensen, P.4
Nigg, E.A.5
Mann, M.6
-
53
-
-
33646473345
-
A mammalian organelle map by protein correlation profiling
-
Foster, L. J., de Hoog, C. L., Zhang, Y., Xie, X., Mootha, V. K., and Mann, M. (2006) A mammalian organelle map by protein correlation profiling. Cell 125, 187-199
-
(2006)
Cell
, vol.125
, pp. 187-199
-
-
Foster, L.J.1
de Hoog, C.L.2
Zhang, Y.3
Xie, X.4
Mootha, V.K.5
Mann, M.6
-
54
-
-
0242272438
-
-
Evsikov, A. V., and Solter, D.(2003) Comment on 'Stemness': transcriptional profiling of embryonic and adult stem cells and a stem cell molecular signature. Science 302, 393, author reply 393
-
Evsikov, A. V., and Solter, D.(2003) Comment on "'Stemness': transcriptional profiling of embryonic and adult stem cells" and "a stem cell molecular signature". Science 302, 393, author reply 393
-
-
-
-
55
-
-
35148845584
-
Direct reprogramming of genetically unmodified fibroblasts into pluripotent stem cells
-
Meissner, A., Wernig, M., and Jaenisch, R. (2007) Direct reprogramming of genetically unmodified fibroblasts into pluripotent stem cells. Nat. Biotechnol. 25, 1177-1181
-
(2007)
Nat. Biotechnol
, vol.25
, pp. 1177-1181
-
-
Meissner, A.1
Wernig, M.2
Jaenisch, R.3
-
56
-
-
34249880066
-
Generation of germline-competent induced pluripotent stem cells
-
Okita, K., Ichisaka, T., and Yamanaka, S. (2007) Generation of germline-competent induced pluripotent stem cells. Nature 448, 313-317
-
(2007)
Nature
, vol.448
, pp. 313-317
-
-
Okita, K.1
Ichisaka, T.2
Yamanaka, S.3
-
57
-
-
34249908901
-
In vitro reprogramming of fibroblasts into a pluripotent ES-cell-like state
-
Wernig, M., Meissner, A., Foreman, R., Brambrink, T., Ku, M., Hochedlinger, K., Bernstein, B. E., and Jaenisch, R. (2007) In vitro reprogramming of fibroblasts into a pluripotent ES-cell-like state. Nature 448, 318-324
-
(2007)
Nature
, vol.448
, pp. 318-324
-
-
Wernig, M.1
Meissner, A.2
Foreman, R.3
Brambrink, T.4
Ku, M.5
Hochedlinger, K.6
Bernstein, B.E.7
Jaenisch, R.8
-
58
-
-
20344363684
-
Mechanism of divergent growth factor effects in mesenchymal stem cell differentiation
-
Kratchmarova, I., Blagoev, B., Haack-Sorensen, M., Kassem, M., and Mann, M. (2005) Mechanism of divergent growth factor effects in mesenchymal stem cell differentiation. Science 308, 1472-1477
-
(2005)
Science
, vol.308
, pp. 1472-1477
-
-
Kratchmarova, I.1
Blagoev, B.2
Haack-Sorensen, M.3
Kassem, M.4
Mann, M.5
-
59
-
-
4444335470
-
The ABC's (and XYZ's) of peptide sequencing
-
Steen, H., and Mann, M. (2004) The ABC's (and XYZ's) of peptide sequencing. Nat. Rev. 5, 699-711
-
(2004)
Nat. Rev
, vol.5
, pp. 699-711
-
-
Steen, H.1
Mann, M.2
-
60
-
-
0031026751
-
An alpha-E-catenin gene trap mutation defines its function in preimplantation development
-
Torres, M., Stoykova, A., Huber, O., Chowdhury, K., Bonaldo, P., Mansouri, A., Butz, S., Kemler, R., and Gruss, P. (1997) An alpha-E-catenin gene trap mutation defines its function in preimplantation development. Proc. Natl. Acad. Sci. U. S. A. 94, 901-906
-
(1997)
Proc. Natl. Acad. Sci. U. S. A
, vol.94
, pp. 901-906
-
-
Torres, M.1
Stoykova, A.2
Huber, O.3
Chowdhury, K.4
Bonaldo, P.5
Mansouri, A.6
Butz, S.7
Kemler, R.8
Gruss, P.9
-
61
-
-
0038100185
-
Role of ERas in promoting tumour-like properties in mouse embryonic stem cells
-
Takahashi, K., Mitsui, K., and Yamanaka, S. (2003) Role of ERas in promoting tumour-like properties in mouse embryonic stem cells. Nature 423, 541-545
-
(2003)
Nature
, vol.423
, pp. 541-545
-
-
Takahashi, K.1
Mitsui, K.2
Yamanaka, S.3
-
62
-
-
28444477675
-
Analysis of Esg1 expression in pluripotent cells and the germline reveals similarities with Oct4 and Sox2 and differences between human pluripotent cell lines
-
Western, P., Maldonado-Saldivia, J., van den Bergen, J., Hajkova, P., Saitou, M., Barton, S., and Surani, M. A. (2005) Analysis of Esg1 expression in pluripotent cells and the germline reveals similarities with Oct4 and Sox2 and differences between human pluripotent cell lines. Stem Cells (Dayton) 23, 1436-1442
-
(2005)
Stem Cells (Dayton)
, vol.23
, pp. 1436-1442
-
-
Western, P.1
Maldonado-Saldivia, J.2
van den Bergen, J.3
Hajkova, P.4
Saitou, M.5
Barton, S.6
Surani, M.A.7
-
63
-
-
33746773659
-
Dissecting self-renewal in stem cells with RNA interference
-
Ivanova, N., Dobrin, R., Lu, R., Kotenko, I., Levorse, J., DeCoste, C., Schafer, X., Lun, Y., and Lemischka, I. R. (2006) Dissecting self-renewal in stem cells with RNA interference. Nature 442, 533-538
-
(2006)
Nature
, vol.442
, pp. 533-538
-
-
Ivanova, N.1
Dobrin, R.2
Lu, R.3
Kotenko, I.4
Levorse, J.5
DeCoste, C.6
Schafer, X.7
Lun, Y.8
Lemischka, I.R.9
-
64
-
-
0026532352
-
Fgf-4 expression during gastrulation, myogenesis, limb and tooth development in the mouse
-
Niswander, L., and Martin, G. R. (1992) Fgf-4 expression during gastrulation, myogenesis, limb and tooth development in the mouse. Development (Camb.) 114, 755-768
-
(1992)
Development (Camb.)
, vol.114
, pp. 755-768
-
-
Niswander, L.1
Martin, G.R.2
-
65
-
-
0026070446
-
Specific expression of a retinoic acid-regulated, zinc-finger gene, Rex-1, in preimplantation embryos, trophoblast and spermatocytes
-
Rogers, M. B., Hosler, B. A., and Gudas, L. J. (1991) Specific expression of a retinoic acid-regulated, zinc-finger gene, Rex-1, in preimplantation embryos, trophoblast and spermatocytes. Development (Camb.) 113, 815-824
-
(1991)
Development (Camb.)
, vol.113
, pp. 815-824
-
-
Rogers, M.B.1
Hosler, B.A.2
Gudas, L.J.3
-
66
-
-
33751092246
-
A protein interaction network for pluripotency of embryonic stem cells
-
Wang, J., Rao, S., Chu, J., Shen, X., Levasseur, D. N., Theunissen, T. W., and Orkin, S. H. (2006) A protein interaction network for pluripotency of embryonic stem cells. Nature 444, 364-368
-
(2006)
Nature
, vol.444
, pp. 364-368
-
-
Wang, J.1
Rao, S.2
Chu, J.3
Shen, X.4
Levasseur, D.N.5
Theunissen, T.W.6
Orkin, S.H.7
-
67
-
-
10744225568
-
Stella is a maternal effect gene required for normal early development in mice
-
Payer, B., Saitou, M., Barton, S. C., Thresher, R., Dixon, J. P., Zahn, D., Colledge, W. H., Carlton, M. B., Nakano, T., and Surani, M. A. (2003) Stella is a maternal effect gene required for normal early development in mice. Curr. Biol. 13, 2110-2117
-
(2003)
Curr. Biol
, vol.13
, pp. 2110-2117
-
-
Payer, B.1
Saitou, M.2
Barton, S.C.3
Thresher, R.4
Dixon, J.P.5
Zahn, D.6
Colledge, W.H.7
Carlton, M.B.8
Nakano, T.9
Surani, M.A.10
-
68
-
-
34548817914
-
UTF1 is a chromatin-associated protein involved in ES cell differentiation
-
van den Boom, V., Kooistra, S. M., Boesjes, M., Geverts, B., Houtsmuller, A. B., Monzen, K., Komuro, I., Essers, J., Drenth-Diephuis, L. J., and Eggen, B. J. (2007) UTF1 is a chromatin-associated protein involved in ES cell differentiation. J. Cell Biol. 178, 913-924
-
(2007)
J. Cell Biol
, vol.178
, pp. 913-924
-
-
van den Boom, V.1
Kooistra, S.M.2
Boesjes, M.3
Geverts, B.4
Houtsmuller, A.B.5
Monzen, K.6
Komuro, I.7
Essers, J.8
Drenth-Diephuis, L.J.9
Eggen, B.J.10
-
69
-
-
34247264419
-
Zic3 is required for maintenance of pluripotency in embryonic stem cells
-
Lim, L. S., Loh, Y. H., Zhang, W., Li, Y., Chen, X., Wang, Y., Bakre, M., Ng, H. H., and Stanton, L. W. (2007) Zic3 is required for maintenance of pluripotency in embryonic stem cells. Mol. Biol. Cell 18, 1348-1358
-
(2007)
Mol. Biol. Cell
, vol.18
, pp. 1348-1358
-
-
Lim, L.S.1
Loh, Y.H.2
Zhang, W.3
Li, Y.4
Chen, X.5
Wang, Y.6
Bakre, M.7
Ng, H.H.8
Stanton, L.W.9
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