-
1
-
-
13444282230
-
Protein Snitrosylation: Purview and parameters
-
Hess DT, Matsumoto A, Kim SO, Marshall HE, Stamler JS (2005) Protein Snitrosylation: purview and parameters. Nat Rev Mol Cell Biol 6: 150-166.
-
(2005)
Nat Rev Mol Cell Biol
, vol.6
, pp. 150-166
-
-
Hess, D.T.1
Matsumoto, A.2
Kim, S.O.3
Marshall, H.E.4
Stamler, J.S.5
-
2
-
-
32244445145
-
SNOSID, a proteomic method for identification of cysteine S-nitrosylation sites in complex protein mixtures
-
Hao G, Derakhshan B, Shi L, Campagne F, Gross SS (2006) SNOSID, a proteomic method for identification of cysteine S-nitrosylation sites in complex protein mixtures. Proc Natl Acad Sci U S A 103: 1012-1017.
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, pp. 1012-1017
-
-
Hao, G.1
Derakhshan, B.2
Shi, L.3
Campagne, F.4
Gross, S.S.5
-
3
-
-
0035147435
-
Protein S-nitrosylation: A physiological signal for neuronal nitric oxide
-
Jaffrey SR, Erdjument-Bromage H, Ferris CD, Tempst P, Snyder SH (2001) Protein S-nitrosylation: a physiological signal for neuronal nitric oxide. Nat Cell Biol 3: 193-197.
-
(2001)
Nat Cell Biol
, vol.3
, pp. 193-197
-
-
Jaffrey, S.R.1
Erdjument-Bromage, H.2
Ferris, C.D.3
Tempst, P.4
Snyder, S.H.5
-
4
-
-
0036583926
-
Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics
-
Ong SE, Blagoev B, Kratchmarova I, Kristensen DB, Steen H, et al. (2002) Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics. Mol Cell Proteomics 1: 376-386.
-
(2002)
Mol Cell Proteomics
, vol.1
, pp. 376-386
-
-
Ong, S.E.1
Blagoev, B.2
Kratchmarova, I.3
Kristensen, D.B.4
Steen, H.5
-
5
-
-
42649132889
-
Stable isotope labeling by amino acids in cell culture (SILAC) and proteome quantitation of mouse embryonic stem cells to a depth of 5,111 proteins
-
Graumann J, Hubner NC, Kim JB, Ko K, Moser M, et al. (2008) Stable isotope labeling by amino acids in cell culture (SILAC) and proteome quantitation of mouse embryonic stem cells to a depth of 5,111 proteins. Mol Cell Proteomics 7: 672-683.
-
(2008)
Mol Cell Proteomics
, vol.7
, pp. 672-683
-
-
Graumann, J.1
Hubner, N.C.2
Kim, J.B.3
Ko, K.4
Moser, M.5
-
6
-
-
40649117198
-
Dissection of the insulin signaling pathway via quantitative phosphoproteomics
-
Kruger M, Kratchmarova I, Blagoev B, Tseng YH, Kahn CR, et al. (2008) Dissection of the insulin signaling pathway via quantitative phosphoproteomics. Proc Natl Acad Sci U S A 105: 2451-2456.
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, pp. 2451-2456
-
-
Kruger, M.1
Kratchmarova, I.2
Blagoev, B.3
Tseng, Y.H.4
Kahn, C.R.5
-
7
-
-
34848911602
-
Selective anchoring of TFIID to nucleosomes by trimethylation of histone H3 lysine 4
-
Vermeulen M, Mulder KW, Denissov S, Pijnappel WW, van Schaik FM, et al. (2007) Selective anchoring of TFIID to nucleosomes by trimethylation of histone H3 lysine 4. Cell 131: 58-69.
-
(2007)
Cell
, vol.131
, pp. 58-69
-
-
Vermeulen, M.1
Mulder, K.W.2
Denissov, S.3
Pijnappel, W.W.4
van Schaik, F.M.5
-
8
-
-
18744375196
-
Identifying and quantifying in vivo methylation sites by heavy methyl SILAC
-
Ong SE, Mittler G, Mann M (2004) Identifying and quantifying in vivo methylation sites by heavy methyl SILAC. Nat Methods 1: 119-126.
-
(2004)
Nat Methods
, vol.1
, pp. 119-126
-
-
Ong, S.E.1
Mittler, G.2
Mann, M.3
-
9
-
-
40649117198
-
Dissection of the insulin signaling pathway via quantitative phosphoproteomics
-
Kruger M, Kratchmarova I, Blagoev B, Tseng YH, Kahn CR, et al. (2008) Dissection of the insulin signaling pathway via quantitative phosphoproteomics. Proc Natl Acad Sci U S A 105: 2451-2456.
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, pp. 2451-2456
-
-
Kruger, M.1
Kratchmarova, I.2
Blagoev, B.3
Tseng, Y.H.4
Kahn, C.R.5
-
10
-
-
63049091804
-
The phosphotyrosine interactome of the insulin receptor family and its substrates IRS-1 and IRS-2
-
Hanke S, Mann M (2008) The phosphotyrosine interactome of the insulin receptor family and its substrates IRS-1 and IRS-2. Mol Cell Proteomics 8(3): 519-34.
-
(2008)
Mol Cell Proteomics
, vol.8
, Issue.3
, pp. 519-534
-
-
Hanke, S.1
Mann, M.2
-
11
-
-
42649106845
-
Detergent-free biotin switch combined with liquid chromatography/tandem mass spectrometry in the analysis of S-nitrosylated proteins
-
Han P, Chen C (2008) Detergent-free biotin switch combined with liquid chromatography/tandem mass spectrometry in the analysis of S-nitrosylated proteins. Rapid Commun Mass Spectrom 22: 1137-1145.
-
(2008)
Rapid Commun Mass Spectrom
, vol.22
, pp. 1137-1145
-
-
Han, P.1
Chen, C.2
-
12
-
-
0028092958
-
Nitric oxide synthases: Roles, tolls, and controls
-
Nathan C, Xie QW (1994) Nitric oxide synthases: roles, tolls, and controls. Cell 78: 915-918.
-
(1994)
Cell
, vol.78
, pp. 915-918
-
-
Nathan, C.1
Xie, Q.W.2
-
13
-
-
14644431701
-
Identification of Snitrosylated proteins in endotoxin-stimulated RAW264.7 murine macrophages
-
Gao C, Guo H, Wei J, Mi Z, Wai PY, et al. (2005) Identification of Snitrosylated proteins in endotoxin-stimulated RAW264.7 murine macrophages. Nitric Oxide 12: 121-126.
-
(2005)
Nitric Oxide
, vol.12
, pp. 121-126
-
-
Gao, C.1
Guo, H.2
Wei, J.3
Mi, Z.4
Wai, P.Y.5
-
14
-
-
0015545444
-
The effect of glucocorticosteroids on the proliferation and kinetics of promonocytes and monocytes of the bone marrow
-
Thompson J, van FR (1973) The effect of glucocorticosteroids on the proliferation and kinetics of promonocytes and monocytes of the bone marrow. J Exp Med 137: 10-21.
-
(1973)
J Exp Med
, vol.137
, pp. 10-21
-
-
Thompson, J.1
Van, F.R.2
-
15
-
-
59149085480
-
Quantitative proteomics analysis of macrophage rafts reveals compartmentalized activationof the proteasome and of proteasome-mediated ERK activation in response to lipopolysaccharide
-
Dhungana S, Merrick BA, Tomer KB, Fessler MB (2009) Quantitative proteomics analysis of macrophage rafts reveals compartmentalized activationof the proteasome and of proteasome-mediated ERK activation in response to lipopolysaccharide. Mol Cell Proteomics 8: 201-213.
-
(2009)
Mol Cell Proteomics
, vol.8
, pp. 201-213
-
-
Dhungana, S.1
Merrick, B.A.2
Tomer, K.B.3
Fessler, M.B.4
-
16
-
-
0037108887
-
Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search
-
Keller A, Nesvizhskii AI, Kolker E, Aebersold R (2002) Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search. Anal Chem 74: 5383-5392.
-
(2002)
Anal Chem
, vol.74
, pp. 5383-5392
-
-
Keller, A.1
Nesvizhskii, A.I.2
Kolker, E.3
Aebersold, R.4
-
17
-
-
0344737959
-
Automated statistical analysis of protein abundance ratios from data generated by stable-isotope dilution andtandem mass spectrometry
-
Li XJ, Zhang H, Ranish JA, Aebersold R (2003) Automated statistical analysis of protein abundance ratios from data generated by stable-isotope dilution andtandem mass spectrometry. Anal Chem 75: 6648-6657.
-
(2003)
Anal Chem
, vol.75
, pp. 6648-6657
-
-
Li, X.J.1
Zhang, H.2
Ranish, J.A.3
Aebersold, R.4
-
18
-
-
38549126643
-
KEGG for linking genomes to life and the environment
-
Kanehisa M, Araki M, Goto S, Hattori M, Hirakawa M, et al. (2008) KEGG for linking genomes to life and the environment. Nucleic Acids Res 36: D480-D484.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Kanehisa, M.1
Araki, M.2
Goto, S.3
Hattori, M.4
Hirakawa, M.5
-
19
-
-
28644432877
-
Very fast empirical prediction andrationalization of protein pKa values
-
Li H, Robertson AD, Jensen JH (2005) Very fast empirical prediction andrationalization of protein pKa values. Proteins 61: 704-721.
-
(2005)
Proteins
, vol.61
, pp. 704-721
-
-
Li, H.1
Robertson, A.D.2
Jensen, J.H.3
-
20
-
-
67149105766
-
Proteomic analysis of S-nitrosylation and denitrosylation by resin-assisted capture
-
Forrester MT, Thompson JW, Foster MW, Nogueira L, Moseley MA, et al. (2009) Proteomic analysis of S-nitrosylation and denitrosylation by resin-assisted capture. Nat Biotechnol 27: 557-559.
-
(2009)
Nat Biotechnol
, vol.27
, pp. 557-559
-
-
Forrester, M.T.1
Thompson, J.W.2
Foster, M.W.3
Nogueira, L.4
Moseley, M.A.5
-
21
-
-
0343396326
-
The dual role of S-nitrosoglutathione (GSNO) during thymocyte apoptosis
-
Sandau K, Brune B (1996) The dual role of S-nitrosoglutathione (GSNO) during thymocyte apoptosis. Cell Signal 8: 173-177.
-
(1996)
Cell Signal
, vol.8
, pp. 173-177
-
-
Sandau, K.1
Brune, B.2
-
22
-
-
34548178909
-
In-gel digestion for mass spectrometric characterization of proteins and proteomes
-
Shevchenko A, Tomas H, Havlis J, Olsen JV, Mann M (2006) In-gel digestion for mass spectrometric characterization of proteins and proteomes. Nat Protoc 1: 2856-2860.
-
(2006)
Nat Protoc
, vol.1
, pp. 2856-2860
-
-
Shevchenko, A.1
Tomas, H.2
Havlis, J.3
Olsen, J.V.4
Mann, M.5
-
23
-
-
24044440971
-
BiNGO: A Cytoscape plugin to assess overrepresentation of gene ontology categories in biological networks
-
Maere S, Heymans K, Kuiper M (2005) BiNGO: a Cytoscape plugin to assess overrepresentation of gene ontology categories in biological networks. Bioinformatics 21: 3448-3449.
-
(2005)
Bioinformatics
, vol.21
, pp. 3448-3449
-
-
Maere, S.1
Heymans, K.2
Kuiper, M.3
-
24
-
-
61449172037
-
Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
-
Huang dW, Sherman BT, Lempicki RA (2009) Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat Protoc 4: 44-57.
-
(2009)
Nat Protoc
, vol.4
, pp. 44-57
-
-
Huang, D.W.1
Sherman, B.T.2
Lempicki, R.A.3
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