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Volumn 343, Issue 1-2, 2010, Pages 91-99

A proteomic approach for plasma biomarker discovery with 8-plex iTRAQ labeling and SCX-LC-MS/MS

Author keywords

8 plex iTRAQ; Fractionation; Plasma protein; SCX LC MS MS

Indexed keywords

ADENOSINE TRIPHOSPHATASE; AMYLOID A PROTEIN; AMYLOID P COMPONENT; ATTRACTIN; BIOLOGICAL MARKER; C REACTIVE PROTEIN; COLLAGEN; COMPLEMENT COMPONENT C9; COMPLEMENT FACTOR H; COMPLEMENT FACTOR I; DIPEPTIDYL PEPTIDASE; FRIZZLED PROTEIN; HAPTOGLOBIN; IMMUNOGLOBULIN HEAVY CHAIN; MYELOPEROXIDASE; PEPTIDE; PLASMA PROTEIN; REAGENT; TRYPSIN;

EID: 77957595022     PISSN: 03008177     EISSN: 15734919     Source Type: Journal    
DOI: 10.1007/s11010-010-0502-x     Document Type: Article
Times cited : (52)

References (30)
  • 2
    • 11844277616 scopus 로고    scopus 로고
    • An optimized protocol for nano-LC-MALDI-TOF-MS coupling for the analysis of proteolytic digests of glycoproteins
    • DOI 10.1002/bmc.399
    • G Lochnit R Geyer 2004 An optimized protocol for nano-LC-MALDI-TOF-MS coupling for the analysis of proteolytic digests of glycoproteins Biomed Chromatogr 18 841 848 1:CAS:528:DC%2BD2MXjtVWltA%3D%3D 10.1002/bmc.399 15386570 (Pubitemid 40089857)
    • (2004) Biomedical Chromatography , vol.18 , Issue.10 , pp. 841-848
    • Lochnit, G.1    Geyer, R.2
  • 3
    • 23944475619 scopus 로고    scopus 로고
    • Differences among techniques for high-abundant protein depletion
    • DOI 10.1002/pmic.200402021
    • N Zolotarjova J Martosella G Nicol, et al. 2005 Differences among techniques for high-abundant protein depletion Proteomics 5 3304 3313 1:CAS:528:DC%2BD2MXps12itL4%3D 10.1002/pmic.200402021 16052628 (Pubitemid 41192037)
    • (2005) Proteomics , vol.5 , Issue.13 , pp. 3304-3313
    • Zolotarjova, N.1    Martosella, J.2    Nicol, G.3    Bailey, J.4    Boyes, B.E.5    Barrett, W.C.6
  • 4
    • 33750112796 scopus 로고    scopus 로고
    • Protein Equalizer Technology: The quest for a "democratic proteome"
    • 1:CAS:528:DC%2BD28XnvFalsb4%3D 10.1002/pmic.200500904 16800034
    • PG Righetti E Boschetti L Lomas, et al. 2006 Protein Equalizer Technology: the quest for a "democratic proteome" Proteomics 6 3980 3992 1:CAS:528:DC%2BD28XnvFalsb4%3D 10.1002/pmic.200500904 16800034
    • (2006) Proteomics , vol.6 , pp. 3980-3992
    • Righetti, P.G.1    Boschetti, E.2    Lomas, L.3
  • 5
    • 70449558565 scopus 로고    scopus 로고
    • A technically detailed and pragmatic protocol for quantitative serum proteomics using iTRAQ
    • 1:CAS:528:DC%2BD1MXhsVWqu7rI 10.1016/j.jprot.2009.07.009 19651253
    • S Tonack M Aspinall-O'Dea RE Jenkins, et al. 2009 A technically detailed and pragmatic protocol for quantitative serum proteomics using iTRAQ J Proteomics 73 352 356 1:CAS:528:DC%2BD1MXhsVWqu7rI 10.1016/j.jprot.2009.07.009 19651253
    • (2009) J Proteomics , vol.73 , pp. 352-356
    • Tonack, S.1    Aspinall-O'Dea, M.2    Jenkins, R.E.3
  • 6
    • 60849093488 scopus 로고    scopus 로고
    • Biomarker discovery in low-grade breast cancer using isobaric stable isotope tags and two-dimensional liquid chromatography-tandem mass spectrometry (iTRAQ-2DLC-MS/MS) based quantitative proteomic analysis
    • 1:CAS:528:DC%2BD1cXhsVShsLvN 10.1021/pr800622b 19053527
    • P Bouchal T Roumeliotis R Hrstka, et al. 2009 Biomarker discovery in low-grade breast cancer using isobaric stable isotope tags and two-dimensional liquid chromatography-tandem mass spectrometry (iTRAQ-2DLC-MS/MS) based quantitative proteomic analysis J Proteome Res 8 362 373 1:CAS:528: DC%2BD1cXhsVShsLvN 10.1021/pr800622b 19053527
    • (2009) J Proteome Res , vol.8 , pp. 362-373
    • Bouchal, P.1    Roumeliotis, T.2    Hrstka, R.3
  • 7
    • 35648942133 scopus 로고    scopus 로고
    • 8-Plex quantitation of changes in cerebrospinal fluid protein expression in subjects undergoing intravenous immunoglobulin treatment for Alzheimer's disease
    • DOI 10.1002/pmic.200700316
    • L Choe M D'Ascenzo NR Relkin, et al. 2007 8-plex quantitation of changes in cerebrospinal fluid protein expression in subjects undergoing intravenous immunoglobulin treatment for Alzheimer's disease Proteomics 7 3651 3660 1:CAS:528:DC%2BD2sXhtlShsbrO 10.1002/pmic.200700316 17880003 (Pubitemid 350022271)
    • (2007) Proteomics , vol.7 , Issue.20 , pp. 3651-3660
    • Choe, L.1    D'Ascenzo, M.2    Relkin, N.R.3    Pappin, D.4    Ross, P.5    Williamson, B.6    Guertin, S.7    Pribil, P.8    Lee, K.H.9
  • 8
    • 41949139372 scopus 로고    scopus 로고
    • Quantitative shotgun proteomics of enriched heterocysts from Nostoc sp. PCC 7120 using 8-plex isobaric peptide tags
    • 1:CAS:528:DC%2BD1cXitlejtbg%3D 10.1021/pr700604v 18290607
    • SY Ow T Cardona A Taton, et al. 2008 Quantitative shotgun proteomics of enriched heterocysts from Nostoc sp. PCC 7120 using 8-plex isobaric peptide tags J Proteome Res 7 1615 1628 1:CAS:528:DC%2BD1cXitlejtbg%3D 10.1021/pr700604v 18290607
    • (2008) J Proteome Res , vol.7 , pp. 1615-1628
    • Ow, S.Y.1    Cardona, T.2    Taton, A.3
  • 9
    • 74049118091 scopus 로고    scopus 로고
    • A proteomic approach for plasma biomarker discovery with iTRAQ labelling and OFFGEL fractionation
    • E Ernoult A Bourreau E Gamelin, et al. 2010 A proteomic approach for plasma biomarker discovery with iTRAQ labelling and OFFGEL fractionation J Biomed Biotechnol 2010 917 927
    • (2010) J Biomed Biotechnol , vol.2010 , pp. 917-927
    • Ernoult, E.1    Bourreau, A.2    Gamelin, E.3
  • 10
    • 51649090933 scopus 로고    scopus 로고
    • ITRAQ experimental design for plasma biomarker discovery
    • 1:CAS:528:DC%2BD1cXntVyhurg%3D 10.1021/pr800072x 18549257
    • X Song J Bandow J Sherman, et al. 2008 iTRAQ experimental design for plasma biomarker discovery J Proteome Res 7 2952 2958 1:CAS:528: DC%2BD1cXntVyhurg%3D 10.1021/pr800072x 18549257
    • (2008) J Proteome Res , vol.7 , pp. 2952-2958
    • Song, X.1    Bandow, J.2    Sherman, J.3
  • 13
    • 34848889259 scopus 로고    scopus 로고
    • The paragon algorithm, a next generation search engine that uses sequence temperature values sequence temperature values and feature probabilities to identify peptides from tandem mass spectra
    • DOI 10.1074/mcp.T600050-MCP200
    • IV Shilov SL Seymour AA Patel, et al. 2007 The Paragon Algorithm, a next generation search engine that uses sequence temperature values and feature probabilities to identify peptides from tandem mass spectra Mol Cell Proteomics 6 1638 1655 1:CAS:528:DC%2BD2sXhtVGqsr3N 10.1074/mcp.T600050-MCP200 17533153 (Pubitemid 47506173)
    • (2007) Molecular and Cellular Proteomics , vol.6 , Issue.9 , pp. 1638-1655
    • Shilov, I.V.1    Seymourt, S.L.2    Patel, A.A.3    Loboda, A.4    Tang, W.H.5    Keating, S.P.6    Hunter, C.L.7    Nuwaysir, L.M.8    Schaeffer, D.A.9
  • 14
    • 44449120368 scopus 로고    scopus 로고
    • Immunoaffinity fractionation of plasma proteins by chicken IgY antibodies
    • 1:CAS:528:DC%2BD1cXltVKms78%3D 10.1007/978-1-60327-210-0-4 18369885
    • L Huang X Fang 2008 Immunoaffinity fractionation of plasma proteins by chicken IgY antibodies Methods Mol Biol 425 41 51 1:CAS:528:DC%2BD1cXltVKms78%3D 10.1007/978-1-60327-210-0-4 18369885
    • (2008) Methods Mol Biol , vol.425 , pp. 41-51
    • Huang, L.1    Fang, X.2
  • 15
    • 55249123169 scopus 로고    scopus 로고
    • Evaluation of the combination of bead technology with SELDI-TOF-MS and 2-D DIGE for detection of plasma proteins
    • 1:CAS:528:DC%2BD1cXps1Kms7s%3D 10.1021/pr800340c 18690747
    • C Sihlbom I Kanmert H Bahr, et al. 2008 Evaluation of the combination of bead technology with SELDI-TOF-MS and 2-D DIGE for detection of plasma proteins J Proteome Res 7 4191 4198 1:CAS:528:DC%2BD1cXps1Kms7s%3D 10.1021/pr800340c 18690747
    • (2008) J Proteome Res , vol.7 , pp. 4191-4198
    • Sihlbom, C.1    Kanmert, I.2    Bahr, H.3
  • 18
    • 55049110246 scopus 로고    scopus 로고
    • Improved proteome coverage by using iTRAQ labelling and peptide OFFGEL fractionation
    • 10.1186/1477-5956-6-27 18851748
    • E Ernoult E Gamelin C Guette 2008 Improved proteome coverage by using iTRAQ labelling and peptide OFFGEL fractionation Proteome Sci 6 27 10.1186/1477-5956-6-27 18851748
    • (2008) Proteome Sci , vol.6 , pp. 27
    • Ernoult, E.1    Gamelin, E.2    Guette, C.3
  • 19
  • 20
    • 0030174627 scopus 로고    scopus 로고
    • Kallistatin, a novel human tissue kallikrein inhibitor: Levels in body fluids, blood cells, and tissues in health and disease
    • DOI 10.1016/S0022-2143(96)90152-3
    • J Chao A Schmaier LM Chen, et al. 1996 Kallistatin, a novel human tissue kallikrein inhibitor: levels in body fluids, blood cells, and tissues in health and disease J Lab Clin Med 127 612 620 1:CAS:528:DyaK28XktlCgu7Y%3D 10.1016/S0022-2143(96)90152-3 8648266 (Pubitemid 26310340)
    • (1996) Journal of Laboratory and Clinical Medicine , vol.127 , Issue.6 , pp. 612-620
    • Chao, J.1    Schmaier, A.2    Chen, L.-M.3    Yang, Z.4    Chao, L.5
  • 21
    • 48149106752 scopus 로고    scopus 로고
    • Ficolins and Mannose-Binding Lectin in Danish patients with sarcoidosis
    • 10.1016/j.rmed.2008.04.012 18585026
    • CB Svendsen T Hummelshoj L Munthe-Fog, et al. 2008 Ficolins and Mannose-Binding Lectin in Danish patients with sarcoidosis Respir Med 102 1237 1242 10.1016/j.rmed.2008.04.012 18585026
    • (2008) Respir Med , vol.102 , pp. 1237-1242
    • Svendsen, C.B.1    Hummelshoj, T.2    Munthe-Fog, L.3
  • 22
    • 0033403423 scopus 로고    scopus 로고
    • Serum levels of tetranectin, intercellular adhesion molecule-1 and interleukin-10 in B-chronic lymphocytic leukemia
    • DOI 10.1016/S0009-9120(99)00066-1, PII S0009912099000661
    • EF Kamper AD Papaphilis MK Angelopoulou, et al. 1999 Serum levels of tetranectin, intercellular adhesion molecule-1 and interleukin-10 in B-chronic lymphocytic leukemia Clin Biochem 32 639 645 1:CAS:528:DC%2BD3cXos12juw%3D%3D 10.1016/S0009-9120(99)00066-1 10638947 (Pubitemid 30039093)
    • (1999) Clinical Biochemistry , vol.32 , Issue.8 , pp. 639-645
    • Kamper, E.F.1    Papahiliss, A.D.2    Angelopoulou, M.K.3    Kopeikina, L.T.4    Siakantaris, M.P.5    Pangalis, G.A.6    Stavrudis, J.C.7
  • 23
    • 0032977674 scopus 로고    scopus 로고
    • Does properdin crosslink the cellular and the humoral immune response?
    • DOI 10.1016/S0167-5699(98)01376-0, PII S0167569998013760
    • WJ Schwaeble KB Reid 1999 Does properdin crosslink the cellular and the humoral immune response? Immunol Today 20 17 21 1:CAS:528:DyaK1MXpsFKhuw%3D%3D 10.1016/S0167-5699(98)01376-0 10081225 (Pubitemid 29136545)
    • (1999) Immunology Today , vol.20 , Issue.1 , pp. 17-21
    • Schwaeble, W.J.1    Reid, K.B.M.2
  • 24
    • 0034884805 scopus 로고    scopus 로고
    • Production and application of monoclonal antibodies to human selenoprotein P
    • DOI 10.1248/jhs.47.346
    • Y Saito Y Watanabe E Saito, et al. 2001 Production and application of monoclonal antibodies to human Selenoprotein P J Health Sci 47 346 352 1:CAS:528:DC%2BD3MXlslynurY%3D 10.1248/jhs.47.346 (Pubitemid 32744128)
    • (2001) Journal of Health Science , vol.47 , Issue.4 , pp. 346-352
    • Saito, Y.1    Watanabe, Y.2    Saito, E.3    Honjoh, T.4    Takahashi, K.5
  • 25
    • 0037014564 scopus 로고    scopus 로고
    • CD14 C(-260)→T polymorphism, plasma levels of the soluble endotoxin receptor CD14, their association with chronic infections and risk of stable coronary artery disease
    • DOI 10.1016/S0735-1097(02)01937-X, PII S073510970201937X
    • W Koenig N Khuseyinova MM Hoffmann, et al. 2002 CD14 C(-260)→T polymorphism, plasma levels of the soluble endotoxin receptor CD14, their association with chronic infections and risk of stable coronary artery disease J Am Coll Cardiol 40 34 42 1:CAS:528:DC%2BD38Xls1Cqsro%3D 10.1016/S0735-1097(02) 01937-X 12103253 (Pubitemid 34701374)
    • (2002) Journal of the American College of Cardiology , vol.40 , Issue.1 , pp. 34-42
    • Koenig, W.1    Khuseyinova, N.2    Hoffmann, M.M.3    Marz, W.4    Frohlich, M.5    Hoffmeister, A.6    Brenner, H.7    Rothenbacher, D.8
  • 26
    • 23944505253 scopus 로고    scopus 로고
    • Exploring the Human Plasma Proteome: Editorial
    • DOI 10.1002/pmic.200590056
    • GS Omenn 2005 Exploring the human plasma proteome Proteomics 5 3223 3225 1:CAS:528:DC%2BD2MXps12it7o%3D 10.1002/pmic.200590056 16104055 (Pubitemid 41192031)
    • (2005) Proteomics , vol.5 , Issue.13 , pp. 3223-3225
    • Omenn, G.S.1
  • 28
    • 54249125034 scopus 로고    scopus 로고
    • Elevated serum concentrations of activated hepatocyte growth factor activator in patients with multiple myeloma
    • 1:CAS:528:DC%2BD1cXhsVylt7fO 18691255
    • KF Wader UM Fagerli RU Holt, et al. 2008 Elevated serum concentrations of activated hepatocyte growth factor activator in patients with multiple myeloma Eur J Haematol 81 380 383 1:CAS:528:DC%2BD1cXhsVylt7fO 18691255
    • (2008) Eur J Haematol , vol.81 , pp. 380-383
    • Wader, K.F.1    Fagerli, U.M.2    Holt, R.U.3
  • 29
    • 0021261075 scopus 로고
    • Plasma sex hormone-binding globulin levels decrease during the second decade of life irrespective of pubertal status
    • 1:STN:280:DyaL2c7mt1Glsw%3D%3D 10.1210/jcem-58-5-915 6538579
    • SK Cunningham T Loughlin M Culliton, et al. 1984 Plasma sex hormone-binding globulin levels decrease during the second decade of life irrespective of pubertal status J Clin Endocrinol Metab 58 915 918 1:STN:280:DyaL2c7mt1Glsw%3D%3D 10.1210/jcem-58-5-915 6538579
    • (1984) J Clin Endocrinol Metab , vol.58 , pp. 915-918
    • Cunningham, S.K.1    Loughlin, T.2    Culliton, M.3
  • 30
    • 0036082534 scopus 로고    scopus 로고
    • Heritability of plasma renin activity and plasma concentration of angiotensinogen and angiotensin-converting enzyme
    • DOI 10.1038/sj.jhh.1001410
    • WJ Vinck RH Fagard R Vlietinck, et al. 2002 Heritability of plasma renin activity and plasma concentration of angiotensinogen and angiotensin-converting enzyme J Hum Hypertens 16 417 422 1:CAS:528:DC%2BD38XltVKitLY%3D 10.1038/sj.jhh.1001410 12037697 (Pubitemid 34685590)
    • (2002) Journal of Human Hypertension , vol.16 , Issue.6 , pp. 417-422
    • Vinck, W.J.1    Fagard, R.H.2    Vlietinck, R.3    Lijnen, P.4


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