-
1
-
-
0037307837
-
Stable isotope-coded proteomic mass spectrometry
-
Goshe, M. B., and Smith, R. D. (2003) Stable isotope-coded proteomic mass spectrometry. Curr. Opin. Biotechnol. 14, 101-109
-
(2003)
Curr. Opin. Biotechnol.
, vol.14
, pp. 101-109
-
-
Goshe, M.B.1
Smith, R.D.2
-
2
-
-
0037307816
-
Advances in quantitative proteomics via stable isotope tagging and mass spectrometry
-
Tao, W. A., and Aebersold, R. (2003) Advances in quantitative proteomics via stable isotope tagging and mass spectrometry. Curr. Opin. Biotechnol. 14, 110-118
-
(2003)
Curr. Opin. Biotechnol.
, vol.14
, pp. 110-118
-
-
Tao, W.A.1
Aebersold, R.2
-
3
-
-
0032875697
-
Quantitative analysis of complex protein mixtures using isotope-coded affinity tags
-
Gygi, S. P., Rist, B., Gerber, S. A., Turecek, F., Gelb, M. H., and Aebersold, R. (1999) Quantitative analysis of complex protein mixtures using isotope-coded affinity tags. Nat. Biotechnol. 17, 994-999
-
(1999)
Nat. Biotechnol.
, vol.17
, pp. 994-999
-
-
Gygi, S.P.1
Rist, B.2
Gerber, S.A.3
Turecek, F.4
Gelb, M.H.5
Aebersold, R.6
-
4
-
-
0034789979
-
Quantitative profiling of differentiation-induced microsomal proteins using isotope-coded affinity tags and mass spectrometry
-
Han D. K., Eng J., Zhou H., and Aebersold R. (2001) Quantitative profiling of differentiation-induced microsomal proteins using isotope-coded affinity tags and mass spectrometry. Nat. Biotechnol. 19, 946-951
-
(2001)
Nat. Biotechnol.
, vol.19
, pp. 946-951
-
-
Han, D.K.1
Eng, J.2
Zhou, H.3
Aebersold, R.4
-
5
-
-
0012351964
-
13C-substituted arginine in stable isotope labeling by amino acids in cell culture (SILAC)
-
13C-substituted arginine in stable isotope labeling by amino acids in cell culture (SILAC). J. Proteome Pes. 2, 173-181
-
(2003)
J. Proteome Pes.
, vol.2
, pp. 173-181
-
-
Ong, S.E.1
Kratchmarova, I.2
Mann, M.3
-
6
-
-
0036164157
-
Selective incorporation of isotopically labeled amino acids for identification of intact proteins on a proteome-wide level
-
Martinovic, S., Veenstra, T. D., Anderson, G. A., Pasa-Tolic, L., and Smith, R. D. (2002) Selective incorporation of isotopically labeled amino acids for identification of intact proteins on a proteome-wide level. J. Mass Spectrom. 37, 99-107
-
(2002)
J. Mass Spectrom.
, vol.37
, pp. 99-107
-
-
Martinovic, S.1
Veenstra, T.D.2
Anderson, G.A.3
Pasa-Tolic, L.4
Smith, R.D.5
-
8
-
-
0036583926
-
Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics
-
Ong, S. E., Blagoev, B., Kratchmarova, I., Kristensen, D. B., Steen, H., Pandey, A., and Mann, M. (2002) Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics. Mol. Cell Proteomics 1, 376-386
-
(2002)
Mol. Cell Proteomics
, vol.1
, pp. 376-386
-
-
Ong, S.E.1
Blagoev, B.2
Kratchmarova, I.3
Kristensen, D.B.4
Steen, H.5
Pandey, A.6
Mann, M.7
-
9
-
-
0035934166
-
Nonsense-mediated mRNA decay in Saccharomyces cerevisiae
-
Gonzalez, C. I., Battacharya, A., Wang W., and Peltz, S. W. (2001) Nonsense-mediated mRNA decay in Saccharomyces cerevisiae. Gene 274, 15-25
-
(2001)
Gene
, vol.274
, pp. 15-25
-
-
Gonzalez, C.I.1
Battacharya, A.2
Wang, W.3
Peltz, S.W.4
-
10
-
-
0033525169
-
A perfect message: RNA surveillance and nonsense-mediated decay
-
Hentze, M. W., and Kulozik A. E. (1999) A perfect message: RNA surveillance and nonsense-mediated decay. Cell 96, 307-310
-
(1999)
Cell
, vol.96
, pp. 307-310
-
-
Hentze, M.W.1
Kulozik, A.E.2
-
11
-
-
12744280249
-
Methods, mixtures, kits and compositions pertaining to analyte determination
-
Application No. WO 2004-US2077
-
Pappin, D. J. C., and Bartlet-Jones, M. (2003) Methods, mixtures, kits and compositions pertaining to analyte determination. PCT Intl. Appl. Application No. WO 2004-US2077
-
(2003)
PCT Intl. Appl.
-
-
Pappin, D.J.C.1
Bartlet-Jones, M.2
-
12
-
-
0033434080
-
Probability-based protein identification by searching sequence data-bases using mass spectrometry data
-
Perkins, D. N., Pappin, D. J., Creasy, D. M., and Cottrell, J. S. P. (1999) Probability-based protein identification by searching sequence data-bases using mass spectrometry data. Electrophoresis 20, 3551-3567
-
(1999)
Electrophoresis
, vol.20
, pp. 3551-3567
-
-
Perkins, D.N.1
Pappin, D.J.2
Creasy, D.M.3
Cottrell, J.S.P.4
-
13
-
-
12444345515
-
Tandem mass tags: A novel quantification strategy for comparative analysis of complex protein mixtures by MS/MS
-
Thompson, A., Schafer J., Kuhn, K., Kienle, S., Schwarz, J., Schmidt G., Johnstone, R., Neumann, T., Hamon, C. (2003) Tandem mass tags: A novel quantification strategy for comparative analysis of complex protein mixtures by MS/MS. Anal. Chem. 75, 1895-1904
-
(2003)
Anal. Chem.
, vol.75
, pp. 1895-1904
-
-
Thompson, A.1
Schafer, J.2
Kuhn, K.3
Kienle, S.4
Schwarz, J.5
Schmidt, G.6
Johnstone, R.7
Neumann, T.8
Hamon, C.9
-
14
-
-
0033588301
-
Molecular characterization of a human DNA kinase
-
Karimi-Busheri, F. Daly, G., Robins, P., Canas, B., Pappin, D. J., Sgouros, J., Miller, G. G., Fakhrai, H., Davis, E. M., Le Beau, M. M., and Weinfeld, M. (1999) Molecular characterization of a human DNA kinase. J. Biol. Chem. 274, 24187-24194
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 24187-24194
-
-
Karimi-Busheri, F.1
Daly, G.2
Robins, P.3
Canas, B.4
Pappin, D.J.5
Sgouros, J.6
Miller, G.G.7
Fakhrai, H.8
Davis, E.M.9
Le Beau, M.M.10
Weinfeld, M.11
-
15
-
-
0037786682
-
Human DNA editing enzyme homologous to the Escherichia coli DnaQ/MutD protein
-
Höss, M., Robins, P., Naven, T. J. P., Pappin, D. J. C., Sgouros, J., and Lindahl, T. A. (1999) human DNA editing enzyme homologous to the Escherichia coli DnaQ/MutD protein. EMBO J. 18, 3868-3875
-
(1999)
EMBO J.
, vol.18
, pp. 3868-3875
-
-
Höss, M.1
Robins, P.2
Naven, T.J.P.3
Pappin, D.J.C.4
Sgouros, J.5
Lindahl, T.A.6
-
16
-
-
4043109141
-
Depth of proteome issues: A yeast ICAT reagent study
-
Parker, K.C., Patterson D., Williamson, B. Marchese, J., Graber, A., He, F., Jacobson, A., Juhasz, P., and Martin S. (2004) Depth of proteome issues: A yeast ICAT reagent study. Mol. Cell Proteomics 3, 625-659
-
(2004)
Mol. Cell Proteomics
, vol.3
, pp. 625-659
-
-
Parker, K.C.1
Patterson, D.2
Williamson, B.3
Marchese, J.4
Graber, A.5
He, F.6
Jacobson, A.7
Juhasz, P.8
Martin, S.9
-
17
-
-
0037795741
-
Absolute quantification of proteins and phosphoproteins from cell lysates by tandem MS
-
Gerber, S. A., Rush, J., Stemman, O., Kirschner, M. W., and Gygi, S. P. (2003) Absolute quantification of proteins and phosphoproteins from cell lysates by tandem MS. Proc. Natl. Acad. Sci. U. S. A. 100, 6940-6945
-
(2003)
Proc. Natl. Acad. Sci. U. S. A.
, vol.100
, pp. 6940-6945
-
-
Gerber, S.A.1
Rush, J.2
Stemman, O.3
Kirschner, M.W.4
Gygi, S.P.5
-
18
-
-
1542399989
-
FatiGO: A web tool for finding significant associations of Gene Ontology terms with groups of genes (fatigo.bioinfo.cnio.es)
-
Al-Shahrour, F., Díaz-Uriarte, R., and Dopaza, J. (2004) FatiGO: A web tool for finding significant associations of Gene Ontology terms with groups of genes (fatigo.bioinfo.cnio.es). Bioinformatics 20, 578-580
-
(2004)
Bioinformatics
, vol.20
, pp. 578-580
-
-
Al-Shahrour, F.1
Díaz-Uriarte, R.2
Dopaza, J.3
-
19
-
-
0347416978
-
Genome-wide analysis of mRNAs regulated by the nonsense-mediated and 5′ to 3′ mRNA decay pathways in yeast
-
He, F., Li, X., Spatrick, P., Casillo, R., Dong, S., and Jacobson, A. (2003) Genome-wide analysis of mRNAs regulated by the nonsense-mediated and 5′ to 3′ mRNA decay pathways in yeast. Mol. Cell 12, 1439-1452
-
(2003)
Mol. Cell
, vol.12
, pp. 1439-1452
-
-
He, F.1
Li, X.2
Spatrick, P.3
Casillo, R.4
Dong, S.5
Jacobson, A.6
-
20
-
-
0027214097
-
Yeast cells lacking 5′-3′ exoribonuclease 1 contain mRNA species that are poly(A) deficient and partially lack the 5′ cap structure
-
Hsu, C. L., and Stevens, A. (1993) Yeast cells lacking 5′-3′ exoribonuclease 1 contain mRNA species that are poly(A) deficient and partially lack the 5′ cap structure. Mol. Cell Biol. 13, 4826-4835
-
(1993)
Mol. Cell Biol.
, vol.13
, pp. 4826-4835
-
-
Hsu, C.L.1
Stevens, A.2
-
21
-
-
0034846319
-
Bms1p, a G-domain-containing protein, associates with Rcl1p and is required for 18S rRNA biogenesis in yeast
-
Wegierski, T., Billy, E., Nasr, F., and Filipowicz, W. (2001) Bms1p, a G-domain-containing protein, associates with Rcl1p and is required for 18S rRNA biogenesis in yeast. RNA 7, 1254-1267
-
(2001)
RNA
, vol.7
, pp. 1254-1267
-
-
Wegierski, T.1
Billy, E.2
Nasr, F.3
Filipowicz, W.4
-
22
-
-
0034095465
-
Sec24p and Iss1p function interchangeably in transport vesicle formation from the endoplasmic reticulum in Saccharomyces cerevisiae
-
Kurihara, T., Hamamoto, S., Gimeno, R. E., Kaiser, C. A., Schekman, R., and Yoshihisa, T. (2000) Sec24p and Iss1p function interchangeably in transport vesicle formation from the endoplasmic reticulum in Saccharomyces cerevisiae. Mol. Biol. Cell 11, 983-998
-
(2000)
Mol. Biol. Cell
, vol.11
, pp. 983-998
-
-
Kurihara, T.1
Hamamoto, S.2
Gimeno, R.E.3
Kaiser, C.A.4
Schekman, R.5
Yoshihisa, T.6
-
23
-
-
0024787847
-
A yeast gene important for protein assembly into the endoplasmic reticulum and the nucleus has homology to DnaJ, an Escherichia coli heat shock protein
-
Sadler, I., Chiang, A., Kurihara, T., Rothblatt, J. A., Way, J., and Silver, P. A. (1989) A yeast gene important for protein assembly into the endoplasmic reticulum and the nucleus has homology to DnaJ, an Escherichia coli heat shock protein. J. Cell Biol. 109, 2665-2675
-
(1989)
J. Cell Biol.
, vol.109
, pp. 2665-2675
-
-
Sadler, I.1
Chiang, A.2
Kurihara, T.3
Rothblatt, J.A.4
Way, J.5
Silver, P.A.6
-
24
-
-
0027256768
-
The yeast SIS1 protein, a DnaJ homolog, is required for the initiation of translation
-
Zhong, T., and Arndt, K. T. (1993) The yeast SIS1 protein, a DnaJ homolog, is required for the initiation of translation. Cell 73, 1175-1186
-
(1993)
Cell
, vol.73
, pp. 1175-1186
-
-
Zhong, T.1
Arndt, K.T.2
-
25
-
-
0026463872
-
Purification and characterization of yeast RNA polymerase II general initiation factor γ
-
Henry, N. L., Sayre, M. H., and Komberg, R. D. (1992) Purification and characterization of yeast RNA polymerase II general initiation factor γ. J. Biol. Chem. 267, 23388-23392
-
(1992)
J. Biol. Chem.
, vol.267
, pp. 23388-23392
-
-
Henry, N.L.1
Sayre, M.H.2
Komberg, R.D.3
-
26
-
-
0031724595
-
Pbp1, a factor interacting with Saccharomyces cerevisiae poly(A)-binding protein, regulates polyadenylation
-
Mangus, D. A., Amrani, N., and Jacobson, A. (1998) Pbp1, a factor interacting with Saccharomyces cerevisiae poly(A)-binding protein, regulates polyadenylation. Mol. Cell Biol. 18, 7383-7396
-
(1998)
Mol. Cell Biol.
, vol.18
, pp. 7383-7396
-
-
Mangus, D.A.1
Amrani, N.2
Jacobson, A.3
-
27
-
-
0032525327
-
A single amino acid substitution in yeast elF-5A results in mRNA stabilization
-
Zuk, D., and Jacobson, A. (1998) A single amino acid substitution in yeast elF-5A results in mRNA stabilization. EMBO J. 17, 2914-2925
-
(1998)
EMBO J.
, vol.17
, pp. 2914-2925
-
-
Zuk, D.1
Jacobson, A.2
-
28
-
-
0026584855
-
Characterization of the yeast SWI1, SWI2, and SWI3 genes, which encode a global activator of transcription
-
Peterson, C. L., and Herskowitz, I. (1992) Characterization of the yeast SWI1, SWI2, and SWI3 genes, which encode a global activator of transcription. Cell 68, 573-583
-
(1992)
Cell
, vol.68
, pp. 573-583
-
-
Peterson, C.L.1
Herskowitz, I.2
-
29
-
-
0025123264
-
REB1, a yeast DNA-binding protein with many targets, is essential for growth and bears some resemblance to the oncogene myb
-
Ju, Q., Morrow, B. E., and Warner, J. R. (1990) REB1, a yeast DNA-binding protein with many targets, is essential for growth and bears some resemblance to the oncogene myb. Mol. Cell Biol. 10, 5226-5234
-
(1990)
Mol. Cell Biol.
, vol.10
, pp. 5226-5234
-
-
Ju, Q.1
Morrow, B.E.2
Warner, J.R.3
-
30
-
-
0024267104
-
SAM2 encodes the second methionine S-adenosyl transferase in Saccharomyces cerevisiae: Physiology and regulation of both enzymes
-
Thomas, D., Rothstein, R., Rosenberg, N., and Surdin-Kerjan, Y. (1988) SAM2 encodes the second methionine S-adenosyl transferase in Saccharomyces cerevisiae: Physiology and regulation of both enzymes. Mol. Cell Biol. 8, 5132-5139
-
(1988)
Mol. Cell Biol.
, vol.8
, pp. 5132-5139
-
-
Thomas, D.1
Rothstein, R.2
Rosenberg, N.3
Surdin-Kerjan, Y.4
-
32
-
-
0025720230
-
Fragments of the internal trsanscribed spacer 1 or pre-rRNA accumulate in Saccharomyces cerevisiae lacking 5′-3′ exoribonuclease 1
-
Stevens, A. Hsu, C. L., Isham, K. R., and Larimer, F. W. (1991) Fragments of the internal trsanscribed spacer 1 or pre-rRNA accumulate in Saccharomyces cerevisiae lacking 5′-3′ exoribonuclease 1. J. Bacteriol. 173, 7024-7028
-
(1991)
J. Bacteriol.
, vol.173
, pp. 7024-7028
-
-
Stevens, A.1
Hsu, C.L.2
Isham, K.R.3
Larimer, F.W.4
-
33
-
-
0034043404
-
Upf1p control of nonsense mRNA translation is regulated by Nmd2p and Upf3p
-
Maderazo, A. B., He, F., Mangus, D. A., and Jacobson, A. (2000) Upf1p control of nonsense mRNA translation is regulated by Nmd2p and Upf3p. Mol. Cell Biol. 20, 4591-4603
-
(2000)
Mol. Cell Biol.
, vol.20
, pp. 4591-4603
-
-
Maderazo, A.B.1
He, F.2
Mangus, D.A.3
Jacobson, A.4
-
34
-
-
0036545614
-
Complementary profiling of gene expression at the transcriptome and proteome levels in Saccharomyces cerevisiae
-
Griffin, T. J., Gygi, S. P., Ideker, T., Rist, B., Eng, J., Hood, L., and Aebersold R. (2002) Complementary profiling of gene expression at the transcriptome and proteome levels in Saccharomyces cerevisiae. Mol. Cell Proteomics 1, 323-333
-
(2002)
Mol. Cell Proteomics
, vol.1
, pp. 323-333
-
-
Griffin, T.J.1
Gygi, S.P.2
Ideker, T.3
Rist, B.4
Eng, J.5
Hood, L.6
Aebersold, R.7
-
35
-
-
0033016717
-
Correlation between protein and mRNA abundance in yeast
-
Gygi, S. P., Rochon, Y., Franza, B. R., and Aebersold, R. (1999) Correlation between protein and mRNA abundance in yeast. Mol. Cell Biol. 19, 1720-1730
-
(1999)
Mol. Cell Biol.
, vol.19
, pp. 1720-1730
-
-
Gygi, S.P.1
Rochon, Y.2
Franza, B.R.3
Aebersold, R.4
-
36
-
-
0141924429
-
Reproducibility of quantitative proteomic analyses of complex biological mixtures by multidimensional protein identification technology
-
Washburn, M. P., Ulaszek, R. R., and Yates, J. R. III (2003) Reproducibility of quantitative proteomic analyses of complex biological mixtures by multidimensional protein identification technology. Anal. Chem. 75, 5054-5061
-
(2003)
Anal. Chem.
, vol.75
, pp. 5054-5061
-
-
Washburn, M.P.1
Ulaszek, R.R.2
Yates III, J.R.3
|