Involvement of putative SNF2 chromatin remodeling protein DRD1 in RNA-directed DNA methylation

Current Biology

Volumn 14, Issue 9, 2004, Pages 801-805

  Kanno, Tatsuo ^a   Mette, M Florian ^b   Kreil, David P ^c   Aufsatz, Werner ^a   Matzke, Marjori ^a   Matzke, Antonius J M ^a  

^a GREGOR MENDEL INSTITUTE OF MOLECULAR PLANT BIOLOGY   (Austria)

^b LEIBNIZ INSTITUTE OF PLANT GENETICS AND CROP PLANT RESEARCH IPK   (Germany)

^c UNIVERSITY OF CAMBRIDGE   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

DNA BINDING PROTEIN; GREEN FLUORESCENT PROTEIN; HYDROGEN SULFITE; MESYLIC ACID ETHYL ESTER; NUCLEAR PROTEIN; PHOTOPROTEIN; PRIMER DNA; RNA; SULFITE; TRANSCRIPTION FACTOR;

AMINO ACID SEQUENCE; ARABIDOPSIS; ARTICLE; COMPARATIVE STUDY; CROSS BREEDING; DNA METHYLATION; DNA SEQUENCE; GENE SILENCING; GENETICS; METABOLISM; MOLECULAR GENETICS; MUTAGENESIS; NORTHERN BLOTTING; NUCLEOTIDE REPEAT; PROMOTER REGION; SOUTHERN BLOTTING; TRANSGENE;

AMINO ACID SEQUENCE; ARABIDOPSIS; BLOTTING, NORTHERN; BLOTTING, SOUTHERN; CROSSES, GENETIC; DNA METHYLATION; DNA PRIMERS; DNA-BINDING PROTEINS; ETHYL METHANESULFONATE; GENE SILENCING; GREEN FLUORESCENT PROTEINS; LUMINESCENT PROTEINS; MOLECULAR SEQUENCE DATA; MUTAGENESIS; NUCLEAR PROTEINS; PROMOTER REGIONS (GENETICS); REPETITIVE SEQUENCES, NUCLEIC ACID; RNA; SEQUENCE ANALYSIS, DNA; SULFITES; TRANSCRIPTION FACTORS; TRANSGENES;

ARABIDOPSIS;

EID: 2342505910     PISSN: 09609822     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.cub.2004.04.037     Document Type: Article

References (22)

1. Wassenegger M. RNA-directed DNA methylation. Plant Mol. Biol. 43:2000;203-220
2. Matzke M., Aufsatz W., Kanno T., Daxinger L., Papp I., Mette M.F., Matzke A.J.M. Genetic analysis of RNA-mediated transcriptional gene silencing. Biochim. Biophys. Acta. 1677:2004;129-141
3. Cao X., Aufsatz W., Zilberman D., Mette M.F., Huang M., Matzke M., Jacobsen S.E. Role of DRM and CMT3 methyltransferases in RNA-directed DNA methylation. Curr. Biol. 13:2003;2212-2217
4. Jones L., Ratcliff F., Baulcombe D. RNA-directed transcription gene silencing in plants can be inherited independently of the RNA trigger and requires MET1 for maintenance. Curr. Biol. 11:2002;747-757
5. Aufsatz W., Mette M.F., van der Winden J., Matzke M., Matzke A.J.M. HDA6, a putative histone deacetylase needed to enhance DNA methylation induced by RNA. EMBO J. 21:2002;6832-6841
6. Jedelloh J., Stokes T., Richards E. Maintenance of genomic methylation requires a SWI2/SNF2-like protein. Nat. Genet. 22:1999;94-97
7. Dennis K., Fan T., Geiman T., Yan Q., Muegge K. Lsh, a member of the SNF2 family, is required for genome-wide methylation. Genes Dev. 15:2001;2940-2944
8. Gibbons R.J., Pellagatti A., Garrick D., Wood W.G., Malik N., Ayyub H., Langford C., Boultwood J., Wainscoat J.S., Higgs D.R. Identification of acquired somatic mutations in the gene encoding chromatin-remodeling factor ATRX in the α-thalassemia myelodysplasia syndrome (ATMDS). Nat. Genet. 34:2003;446-449
9. Gibbons R.J., McDowell T.L., Raman S., O'Rourke D.M., Garrick D., Ayyub H., Higgs D.R. Mutations in ATRX, encoding a SWI/SNF-like protein, cause diverse changes in the pattern of DNA methylation. Nat. Genet. 24:2000;368-371
10. Mette M.F., Aufsatz W., van der Winden J., Matzke M., Matzke A.J.M. Transcriptional silencing and promoter methylation triggered by double-stranded RNA. EMBO J. 19:2000;5194-5201
11. Sijen T., Vijn I., Rebocho A., van Blokland R., Roelofs D., Mol J., Kooter J. Transcriptional and posttranscriptional gene silencing are mechanistically related. Curr. Biol. 11:2001;436-440
12. Hamilton A., Voinnet O., Chappell L., Baulcombe D. Two classes of short interfering RNA in RNA silencing. EMBO J. 21:2002;4671-4679
13. Aufsatz W., Mette M.F., van der Winden J., Matzke A.J.M., Matzke M. RNA-directed DNA methylation in Arabidopsis. Proc. Natl. Acad. Sci. USA. 99:2002;16499-16508
14. Melquist S., Bender J. Transcription from an upstream promoter controls methylation signaling from an inverted repeat of endogenous genes in Arabidopsis. Genes Dev. 17:2003;2036-2047
15. Plant Chromatin Database. (http://www.chromdb.org); see the proposed Clade A.
16. Servant F., Bru C., Carrere S., Courcelle E., Gouzy J., Peyruc D., Kahn D. ProDom. automated clustering of homologous domains Brief. Bioinform. 3:2002;246-251
17. Lusser A., Kadonaga J. Chromatin remodeling by ATP-dependent molecular machines. Bioessays. 25:2003;1192-1200
18. Alexeev A., Mazin A., Kowalczykowski S.C. Rad54 protein possesses chromatin-remodeling activity stimulated by the Rad51-ssDNA nucleoprotein filament. Nat. Struct. Biol. 10:2003;182-186
19. Chan W.-L., Zilberman D., Xie Z., Johansen L., Carrington J., Jacobsen S. RNA silencing genes control de novo DNA methylation. Science. 303:2004;1336
20. Clough S., Bent A. Floral dip. a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana Plant J. 16:1998;735-743
21. Vongs A., Kakutani T., Martienssen R., Richards E.J. Arabidopsis thaliana DNA methylation mutants. Science. 260:1993;1926-1928
22. Papp I., Mette M.F., Aufsatz W., Daxinger L., Schauer S., Ray A., van der Winden J., Matzke M., Matzke A.J.M. Evidence for nuclear processing of plant microRNA and short interfering RNA precursors. Plant Physiol. 132:2003;1382-1390