The DNA Glycosylase/Lyase ROS1 Functions in Pruning DNA Methylation Patterns in Arabidopsis

Current Biology

Volumn 17, Issue 1, 2007, Pages 54-59

  Zhu, Jianhua ^a   Kapoor, Avnish ^a   Sridhar, Vaniyambadi V ^a   Agius, Fernanda ^a   Zhu, Jian Kang ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

DNA

Indexed keywords

ARABIDOPSIS PROTEIN; NUCLEAR PROTEIN; ROS1 PROTEIN, ARABIDOPSIS; UNCLASSIFIED DRUG;

ARABIDOPSIS; ARTICLE; DNA METHYLATION; ENZYMOLOGY; GC RICH SEQUENCE; GENETICS; GENOME; METABOLISM; MUTATION; TRANSPOSON;

ARABIDOPSIS; ARABIDOPSIS PROTEINS; DNA METHYLATION; DNA TRANSPOSABLE ELEMENTS; GC RICH SEQUENCE; GENOME, PLANT; MUTATION; NUCLEAR PROTEINS;

ARABIDOPSIS;

EID: 33845866061     PISSN: 09609822     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.cub.2006.10.059     Document Type: Article

References (22)

1. Gong Z., Morales-Ruiz T., Ariza R.R., Roldan-Arjona T., David L., and Zhu J.K. ROS1, a repressor of transcriptional gene silencing in Arabidopsis, encodes a DNA glycosylase/lyase. Cell 111 (2002) 803-814
2. Agius F., Kapoor A., and Zhu J.K. Role of the Arabidopsis DNA glycosylase/lyase ROS1 in active DNA demethylation. Proc. Natl. Acad. Sci. USA 103 (2006) 11796-11801
3. Matzke M.A., and Birchler J.A. RNAi-mediated pathways in the nucleus. Nat. Rev. Genet. 6 (2005) 24-35
4. Zilberman D., and Henikoff S. Silencing of transposons in plant genomes: Kick them when they're down. Genome Biol. 5 (2004) 249
5. Chan S.W., Henderson I.R., and Jacobsen S.E. Gardening the genome: DNA methylation in Arabidopsis thaliana. Nat. Rev. Genet. 6 (2005) 351-360
6. Rangwala S.H., and Richards E. The value-added genome: Building and maintaining genomic cytosine methylation landscapes. Curr. Opin. Genet. Dev. 14 (2004) 686-691
7. Tariq M., and Paszkowski J. DNA and histone methylation in plants. Trends Genet. 20 (2004) 244-251
8. Bender J. DNA methylation and epigenetics. Annu. Rev. Plant Biol. 55 (2004) 41-68
9. Jaenisch R., and Bird A. Epigenetic regulation of gene expression: How the genome integrates intrinsic and environmental signals. Nat. Genet. 33S (2003) 245-254
10. Pikaard C.S. Genomic change and gene silencing in polyploids. Trends Genet. 17 (2001) 675-677
11. Martienssen R.A., and Colot V. DNA methylation and epigenetic inheritance in plants and filamentous fungi. Science 293 (2001) 1070-1074
12. Kapoor A., Agius F., and Zhu J.K. Preventing transcriptional gene silencing by active DNA demethylation. FEBS Lett. 579 (2005) 5889-5898
13. Gehring M., Huh J.H., Hsieh T.F., Penterman J., Choi Y., Harada J.J., Goldberg R.B., and Fischer R.L. DEMETER DNA glycosylase establishes MEDEA polycomb gene self-imprinting by allele-specific demethylation. Cell 124 (2006) 495-506
14. Morales-Ruiz T., Ortega-Galisteo A.P., Ponferrada-Marin M.I., Martinez-Macias M.I., Ariza R.R., and Roldan-Arjona T. DEMETER and REPRESSOR OF SILENCING 1 encode 5-methylcytosine DNA glycosylases. Proc. Natl. Acad. Sci. USA 103 (2006) 6853-6858
15. Baulcombe D. RNA silencing in plants. Nature 431 (2004) 356-363
16. Lippman Z., May B., Yordan C., Singer T., and Martienssen R. Distinct mechanisms determine transposon inheritance and methylation via small interfering RNA and histone modification. PLoS Biol. 1 (2003) E67
17. Lippman Z., Gendrel A.V., Black M., Vaughn M.W., Dedhia N., McCombie W.R., Lavine K., Mittal V., May B., Kasschau K.D., et al. Role of transposable elements in heterochromatin and epigenetic control. Nature 430 (2004) 471-476
18. Huettel B., Kanno T., Daxinger L., Aufsatz W., Matzke A.J., and Matzke M. Endogenous targets of RNA-directed DNA methylation and Pol IV in Arabidopsis. EMBO J. 25 (2006) 2828-2836
19. McClintock B. The significance of responses of the genome to challenge. Science 226 (1984) 792-801
20. Cullis C.A. Mechanisms and control of rapid genomic changes in flax. Ann. Bot. (Lond.) 95 (2005) 201-206
21. Henikoff S. Rapid changes in plant genomes. Plant Cell 17 (2005) 2852-2855
22. Molinier J., Ries G., Zipfel C., and Hohn B. Transgeneration memory of stress in plants. Nature 442 (2006) 1046-1049