메뉴 건너뛰기




Volumn 34, Issue 5, 2003, Pages 565-572

Characterization of Arabidopsis thaliana methyl-CpG-binding domain (MBD) proteins

Author keywords

Arabidopsis thaliana; Chromatin; DNA methylation; Histone deacetylase (HDAC); Methyl CpG Binding Domain (MBD)

Indexed keywords

DNA; GENES; PROTEINS;

EID: 0038129767     PISSN: 09607412     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-313X.2003.01756.x     Document Type: Article
Times cited : (87)

References (44)
  • 1
    • 0033824259 scopus 로고    scopus 로고
    • Genomic imprinting in plants: Observations and evolutionary implications
    • Alleman, M. and Doctor, J. (2000) Genomic imprinting in plants: observations and evolutionary implications. Plant Mol. Biol. 43, 147-161.
    • (2000) Plant Mol. Biol. , vol.43 , pp. 147-161
    • Alleman, M.1    Doctor, J.2
  • 2
    • 0032830639 scopus 로고    scopus 로고
    • Rett syndrome is caused by mutations in X-linked MeCP2, encoding methyl-CpG-binding protein 2
    • Amir, R.E., Van den Veyver, I.B., Wan, M., Tran, C.Q., Francke, U. and Zoghbi, H.Y. (1999) Rett syndrome is caused by mutations in X-linked MeCP2, encoding methyl-CpG-binding protein 2. Nat. Genet. 23, 185-188.
    • (1999) Nat. Genet. , vol.23 , pp. 185-188
    • Amir, R.E.1    Van Den Veyver, I.B.2    Wan, M.3    Tran, C.Q.4    Francke, U.5    Zoghbi, H.Y.6
  • 3
    • 0035169663 scopus 로고    scopus 로고
    • Methyl-CpG-binding proteins: Targeting specific gene repression
    • Ballestar, E. and Wolffe, A.P. (2001) Methyl-CpG-binding proteins: targeting specific gene repression. Eur. J. Biochem. 268, 1-6.
    • (2001) Eur. J. Biochem. , vol.268 , pp. 1-6
    • Ballestar, E.1    Wolffe, A.P.2
  • 5
    • 0035878120 scopus 로고    scopus 로고
    • Arabidopsis cmt3 chromomethylase mutations block non-CG methylation and silencing of an endogenous gene
    • Bartee, L., Malagnac, F. and Bender, J. (2001) Arabidopsis cmt3 chromomethylase mutations block non-CG methylation and silencing of an endogenous gene. Genes Dev. 15, 1753-1758.
    • (2001) Genes Dev. , vol.15 , pp. 1753-1758
    • Bartee, L.1    Malagnac, F.2    Bender, J.3
  • 6
  • 7
    • 0033580326 scopus 로고    scopus 로고
    • A mammalian protein with specific demethylase activity for mCpGDNA
    • Bhattacharya, S.K., Ramchandani, S., Cervoni, N and Szyf, M. (1999) A mammalian protein with specific demethylase activity for mCpGDNA. Nature, 397, 579-583.
    • (1999) Nature , vol.397 , pp. 579-583
    • Bhattacharya, S.K.1    Ramchandani, S.2    Cervoni, N.3    Szyf, M.4
  • 8
    • 0036144048 scopus 로고    scopus 로고
    • DNA methylation patterns and epigenetic memory
    • Bird, A. (2002) DNA methylation patterns and epigenetic memory. Genes Dev. 16, 6-21.
    • (2002) Genes Dev. , vol.16 , pp. 6-21
    • Bird, A.1
  • 9
    • 0024297354 scopus 로고
    • Multiple sequence alignment with hierarchical clustering
    • Corpet, F. (1988) Multiple sequence alignment with hierarchical clustering. Nucl. Acids Res. 16, 10881-10890.
    • (1988) Nucl. Acids Res. , vol.16 , pp. 10881-10890
    • Corpet, F.1
  • 10
    • 0027452888 scopus 로고
    • Characterization of DBPm, a plant protein that binds to DNA containing 5-methylcytosine
    • Ehrlich, K.C. (1993a) Characterization of DBPm, a plant protein that binds to DNA containing 5-methylcytosine. Biochim. Biophys. Acta, 1172, 108-116.
    • (1993) Biochim. Biophys. Acta , vol.1172 , pp. 108-116
    • Ehrlich, K.C.1
  • 11
    • 0027689301 scopus 로고
    • Partial purification of a pea seed DNA-binding protein that specifically recognizes 5-methylcytosine
    • Ehrlich, K.C. (1993b) Partial purification of a pea seed DNA-binding protein that specifically recognizes 5-methylcytosine. Preport Biochem. 32, 423-438.
    • (1993) Preport Biochem. , vol.32 , pp. 423-438
    • Ehrlich, K.C.1
  • 12
    • 0033824241 scopus 로고    scopus 로고
    • Plant DNA methyltransferases
    • Finnegan, E.J. and Kovac, K.A. (2000) Plant DNA methyltransferases. Plant Mol. Biol. 43, 189-201.
    • (2000) Plant Mol. Biol. , vol.43 , pp. 189-201
    • Finnegan, E.J.1    Kovac, K.A.2
  • 13
    • 0029738387 scopus 로고    scopus 로고
    • Reduced DNA methylation in Arabidopsis thaliana results in abnormal plant development
    • Finnegan, E.J., Peacock, W.J. and Dennis, E.S. (1996) Reduced DNA methylation in Arabidopsis thaliana results in abnormal plant development. Proc. Natl. Acad. Sci. USA, 93, 8449-8454.
    • (1996) Proc. Natl. Acad. Sci. USA , vol.93 , pp. 8449-8454
    • Finnegan, E.J.1    Peacock, W.J.2    Dennis, E.S.3
  • 14
    • 0037423186 scopus 로고    scopus 로고
    • The methyl-CpG-binding protein MeCP2 links DNA methylation to histone methylation
    • Fuks, F., Hurd, P.J., Wolf, D., Nan, X., Bird, A.P. and Kouzarides, T. (2002) The methyl-CpG-binding protein MeCP2 links DNA methylation to histone methylation. J. Biol. Chem. 278, 4035-4040.
    • (2002) J. Biol. Chem. , vol.278 , pp. 4035-4040
    • Fuks, F.1    Hurd, P.J.2    Wolf, D.3    Nan, X.4    Bird, A.P.5    Kouzarides, T.6
  • 15
    • 0019417156 scopus 로고
    • Sequence specificity of methylation in higher plant DNA
    • Gruenbaum, Y., Naveh-Many, T., Cedar, H. and Razin, I. (1981) Sequence specificity of methylation in higher plant DNA. Nature, 292, 860-862.
    • (1981) Nature , vol.292 , pp. 860-862
    • Gruenbaum, Y.1    Naveh-Many, T.2    Cedar, H.3    Razin, I.4
  • 16
    • 0030798245 scopus 로고    scopus 로고
    • Histone acetylation in chromatin structure and transcription
    • Grunstein, M. (1997) Histone acetylation in chromatin structure and transcription. Nature, 389, 349-352.
    • (1997) Nature , vol.389 , pp. 349-352
    • Grunstein, M.1
  • 17
    • 0030797585 scopus 로고    scopus 로고
    • Activation of p53 sequence-specific DNA binding by acetylation of the p53 C-terminal domain
    • Gu, W. and Roeder, R.G. (1997) Activation of p53 sequence-specific DNA binding by acetylation of the p53 C-terminal domain. Cell, 90, 595-606.
    • (1997) Cell , vol.90 , pp. 595-606
    • Gu, W.1    Roeder, R.G.2
  • 18
    • 0031792779 scopus 로고    scopus 로고
    • Identification and characterization of a family of mammalian methyl-CpG-binding proteins
    • Hendrich, B. and Bird, A. (1998) Identification and characterization of a family of mammalian methyl-CpG-binding proteins. Mol. Cell. Biol. 18, 6538-6547.
    • (1998) Mol. Cell. Biol. , vol.18 , pp. 6538-6547
    • Hendrich, B.1    Bird, A.2
  • 19
    • 0033575886 scopus 로고    scopus 로고
    • The thymine glycosylase MBD4 can bind to the product of deamination at methylated CpG sites
    • Hendrich, B., Hardeland, U., Ng, H.H., Jiricny, J. and Bird, A. (1999) The thymine glycosylase MBD4 can bind to the product of deamination at methylated CpG sites. Nature, 401,301-304.
    • (1999) Nature , vol.401 , pp. 301-304
    • Hendrich, B.1    Hardeland, U.2    Ng, H.H.3    Jiricny, J.4    Bird, A.5
  • 20
    • 0027968068 scopus 로고
    • CLUSTALW: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Higgins, D.G., Thompson, J.D. and Gibson, T.J. (1994) CLUSTALW: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucl. Acids Res. 22, 4673-4680.
    • (1994) Nucl. Acids Res. , vol.22 , pp. 4673-4680
    • Higgins, D.G.1    Thompson, J.D.2    Gibson, T.J.3
  • 21
    • 0032907728 scopus 로고    scopus 로고
    • Maintenance of genomic methylation requires a SWI2/SNF2-like protein
    • Jeddeloh, J.A., Stokes, T.L. and Richards, E.J. (1999) Maintenance of genomic methylation requires a SWI2/SNF2-like protein. Nat. Genet. 22, 94-97.
    • (1999) Nat. Genet. , vol.22 , pp. 94-97
    • Jeddeloh, J.A.1    Stokes, T.L.2    Richards, E.J.3
  • 22
    • 0034192205 scopus 로고    scopus 로고
    • MeCP2-driven transcriptional repression in vitro: Selectivity for methylated DNA, action at a distance and contacts with the basal transcription machinery
    • Kaludov, N.K. and Wolffe, A.P. (2001) MeCP2-driven transcriptional repression in vitro: selectivity for methylated DNA, action at a distance and contacts with the basal transcription machinery. Nucl. Acids Res. 28, 1921-1928.
    • (2001) Nucl. Acids Res. , vol.28 , pp. 1921-1928
    • Kaludov, N.K.1    Wolffe, A.P.2
  • 23
    • 0035282573 scopus 로고    scopus 로고
    • Methylation of histone H3 lysine 9 creates a binding site for HP1 proteins
    • Lachner, M., O'Carroll, D., Rea, S., Mechtler, K. and Jenuwein, T. (2001) Methylation of histone H3 lysine 9 creates a binding site for HP1 proteins. Nature, 410, 116-120.
    • (2001) Nature , vol.410 , pp. 116-120
    • Lachner, M.1    O'Carroll, D.2    Rea, S.3    Mechtler, K.4    Jenuwein, T.5
  • 24
    • 0030459140 scopus 로고    scopus 로고
    • The role of DNA methylation in cancer genetics and epigenetics
    • Laird, P.W. and Jaenisch, R. (1996) The role of DNA methylation in cancer genetics and epigenetics. Annu. Rev. Genet. 30, 441-464.
    • (1996) Annu. Rev. Genet. , vol.30 , pp. 441-464
    • Laird, P.W.1    Jaenisch, R.2
  • 25
    • 0026747761 scopus 로고
    • Purification, sequence, and cellular localization of a novel chromosomal protein that binds to methylated DNA
    • Lewis, J.D., Meehan, R.R., Henzel, W.J., Maurer-Fogy, I., Jeppesen, P., Klein, F. and Bird, A. (1992) Purification, sequence, and cellular localization of a novel chromosomal protein that binds to methylated DNA. Cell, 69, 905-914.
    • (1992) Cell , vol.69 , pp. 905-914
    • Lewis, J.D.1    Meehan, R.R.2    Henzel, W.J.3    Maurer-Fogy, I.4    Jeppesen, P.5    Klein, F.6    Bird, A.7
  • 27
    • 0035839055 scopus 로고    scopus 로고
    • DNA methylation and epigenetic inheritance in plants and filamentous fungi
    • Martienssen, R.A. and Colot, V. (2001) DNA methylation and epigenetic inheritance in plants and filamentous fungi. Science, 293, 1070-1074.
    • (2001) Science , vol.293 , pp. 1070-1074
    • Martienssen, R.A.1    Colot, V.2
  • 28
    • 0032989790 scopus 로고    scopus 로고
    • The role of chromatin remodeling in transgene silencing and plant development
    • Meyer, P. (1999) The role of chromatin remodeling in transgene silencing and plant development. In Vitro Cell Dev. Biol. Plant, 35, 29-36.
    • (1999) In Vitro Cell Dev. Biol. Plant , vol.35 , pp. 29-36
    • Meyer, P.1
  • 29
    • 0027495467 scopus 로고
    • Dissection of the methyl-CpG binding domain from the chromosomal protein MeCP2
    • Nan, X., Meehan, R.R. and Bird, A. (1993) Dissection of the methyl-CpG binding domain from the chromosomal protein MeCP2. Nucl. Acids Res. 21, 4886-4892.
    • (1993) Nucl. Acids Res. , vol.21 , pp. 4886-4892
    • Nan, X.1    Meehan, R.R.2    Bird, A.3
  • 31
    • 0035906936 scopus 로고    scopus 로고
    • Solution structure of the methyl-CpG binding domain of human MBD1 in complex with methylated DNA
    • Ohki, I., Shimotake, N., Fujita, N., Jee, J.G., Ikegami, T., Nakao, M. and Shirakawa, M. (2001) Solution structure of the methyl-CpG binding domain of human MBD1 in complex with methylated DNA. Cell, 105, 487-497.
    • (2001) Cell , vol.105 , pp. 487-497
    • Ohki, I.1    Shimotake, N.2    Fujita, N.3    Jee, J.G.4    Ikegami, T.5    Nakao, M.6    Shirakawa, M.7
  • 32
    • 0033486062 scopus 로고    scopus 로고
    • Solution structure of the methyl-CpG-binding domain of the methylation-dependent transcriptional repressor MBD 1
    • Ohki, I., Shimotake, N., Fujita, N., Nakao, M. and Shirakawa, M. (1999) Solution structure of the methyl-CpG-binding domain of the methylation-dependent transcriptional repressor MBD 1. EMBO J. 18, 6653-6661.
    • (1999) EMBO J. , vol.18 , pp. 6653-6661
    • Ohki, I.1    Shimotake, N.2    Fujita, N.3    Nakao, M.4    Shirakawa, M.5
  • 33
    • 0034872980 scopus 로고    scopus 로고
    • Maize chromomethylase Zea methyl-transferase 2 is required for CpNpG methylation
    • Papa, C.M., Springer, N.M., Muszynski, M.G., Meeley, R. and Kaeppler, S.M. (2001) Maize chromomethylase Zea methyl-transferase 2 is required for CpNpG methylation. Plant Cell, 13, 1919-1928.
    • (2001) Plant Cell , vol.13 , pp. 1919-1928
    • Papa, C.M.1    Springer, N.M.2    Muszynski, M.G.3    Meeley, R.4    Kaeppler, S.M.5
  • 34
    • 0034488987 scopus 로고    scopus 로고
    • Characterization of carrot nuclear proteins that exhibit specific binding affinity towards conventional and non-conventional DNA methylation
    • Pitto, L., Cernilogar, F., Evangelista, M., Lombardi, L., Miarelli, C. and Rocchi, P. (2000) Characterization of carrot nuclear proteins that exhibit specific binding affinity towards conventional and non-conventional DNA methylation. Plant Mol. Biol. 44, 659-673.
    • (2000) Plant Mol. Biol. , vol.44 , pp. 659-673
    • Pitto, L.1    Cernilogar, F.2    Evangelista, M.3    Lombardi, L.4    Miarelli, C.5    Rocchi, P.6
  • 35
    • 0037144441 scopus 로고    scopus 로고
    • The mCpG-binding domain of human MBD3 does not bind to mCpG but interacts with NuRD/Mi2 components HDAC1 and MTA2
    • Saito, M. and Ishikawa, F. (2002) The mCpG-binding domain of human MBD3 does not bind to mCpG but interacts with NuRD/Mi2 components HDAC1 and MTA2. J. Biol. Chem. 277, 35434-35439.
    • (2002) J. Biol. Chem. , vol.277 , pp. 35434-35439
    • Saito, M.1    Ishikawa, F.2
  • 36
    • 0030967197 scopus 로고    scopus 로고
    • The silence of genes in transgenic plants
    • Stam, M., Mol, J.N.M. and Kooter, J.M. (1997) The silence of genes in transgenic plants. Ann. Bot. 79, 3-12.
    • (1997) Ann. Bot. , vol.79 , pp. 3-12
    • Stam, M.1    Mol, J.N.M.2    Kooter, J.M.3
  • 37
    • 0034610814 scopus 로고    scopus 로고
    • The language of covalent histone modifications
    • Strahl, B.D. and Allis, C.D. (2000) The language of covalent histone modifications. Nature, 403, 41-45.
    • (2000) Nature , vol.403 , pp. 41-45
    • Strahl, B.D.1    Allis, C.D.2
  • 38
    • 0033883260 scopus 로고    scopus 로고
    • MBD2-MBD3 complex binds to hemi-methylated DNA and forms a complex containing DNMT1 at the replication foci in late S phase
    • Tatematsu, K.I., Yamazaki, T. and Ishikawa, F. (2000) MBD2-MBD3 complex binds to hemi-methylated DNA and forms a complex containing DNMT1 at the replication foci in late S phase. Genes Cells, 5, 677-688.
    • (2000) Genes Cells , vol.5 , pp. 677-688
    • Tatematsu, K.I.1    Yamazaki, T.2    Ishikawa, F.3
  • 39
    • 0035542974 scopus 로고    scopus 로고
    • Methyl CpG-binding proteins and transcriptional repression
    • Wade, P.A. (2001) Methyl CpG-binding proteins and transcriptional repression. Bioessays, 23, 1131-1137.
    • (2001) Bioessays , vol.23 , pp. 1131-1137
    • Wade, P.A.1
  • 40
    • 0032845039 scopus 로고    scopus 로고
    • Mi-2 complex couples DNA methylation to chromatin remodelling and histone deacetylation
    • Wade, P.A., Gegonne, A., Jones, P.L., Ballestar, E., Aubry, F. and Wolffe, A.P. (1999) Mi-2 complex couples DNA methylation to chromatin remodelling and histone deacetylation. Nat. Genet. 23, 62-66.
    • (1999) Nat. Genet. , vol.23 , pp. 62-66
    • Wade, P.A.1    Gegonne, A.2    Jones, P.L.3    Ballestar, E.4    Aubry, F.5    Wolffe, A.P.6
  • 42
    • 0033365401 scopus 로고    scopus 로고
    • Rett syndrome and beyond: Recurrent spontaneous and familial MeCP2 mutations at CpG hotspots
    • Wan, M., Lee, S.S., Zhang, X. et al. (1999) Rett syndrome and beyond: recurrent spontaneous and familial MeCP2 mutations at CpG hotspots. Am. J. Hum. Genet. 65, 1520-1529.
    • (1999) Am. J. Hum. Genet. , vol.65 , pp. 1520-1529
    • Wan, M.1    Lee, S.S.2    Zhang, X.3
  • 44
    • 0024636086 scopus 로고
    • A plant DNA-binding protein that recognizes 5-methylcytosine residues
    • Zhang, D., Ehrlich, K.C., Supakar, P.C. and Ehrlich, M. (1989) A plant DNA-binding protein that recognizes 5-methylcytosine residues. Mol. Cell Biol. 9, 1351-1356.
    • (1989) Mol. Cell Biol. , vol.9 , pp. 1351-1356
    • Zhang, D.1    Ehrlich, K.C.2    Supakar, P.C.3    Ehrlich, M.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.