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Volumn 5, Issue 6, 2010, Pages 483-490

The epigenetic control of the athila family of retrotransposons in Arabidopsis

Author keywords

Arabidopsis; Athila; DDM1; LTR; Retrotransposon; Transposable element; Transposon

Indexed keywords

ARABIDOPSIS; ARTICLE; ATHILA; CENTROMERE; CHROMOSOME; COPY NUMBER VARIATION; EPIGENETICS; GENETIC REGULATION; HYBRID; LONG TERMINAL REPEAT; NONHUMAN; OPEN READING FRAME; PLANT GENOME; RETROPOSON; TRANSPOSON;

EID: 77957326607     PISSN: 15592294     EISSN: 15592308     Source Type: Journal    
DOI: 10.4161/epi.5.6.12119     Document Type: Article
Times cited : (28)

References (54)
  • 1
    • 44649108957 scopus 로고    scopus 로고
    • How Athila retrotransposons survive in the Arabidopsis genome
    • Marco A, Marin I. How Athila retrotransposons survive in the Arabidopsis genome. BMC Genomics 2008; 9:219.
    • (2008) BMC Genomics , vol.9 , pp. 219
    • Marco, A.1    Marin, I.2
  • 2
    • 0030111477 scopus 로고    scopus 로고
    • DNA regions flanking the major Arabidopsis thaliana satellite are principally enriched in Athila retroelement sequences
    • Pelissier T, Tutois S, Tourmente S, Deragon JM, Picard G. DNA regions flanking the major Arabidopsis thaliana satellite are principally enriched in Athila retroelement sequences. Genetica 1996; 97:141-51.
    • (1996) Genetica , vol.97 , pp. 141-151
    • Pelissier, T.1    Tutois, S.2    Tourmente, S.3    Deragon, J.M.4    Picard, G.5
  • 3
    • 0031747556 scopus 로고    scopus 로고
    • Potential retroviruses in plants: Tat1 is related to a group of Arabidopsis thaliana Ty3/ gypsy retrotransposons that encode envelope-like proteins
    • Wright DA, Voytas DF. Potential retroviruses in plants: Tat1 is related to a group of Arabidopsis thaliana Ty3/ gypsy retrotransposons that encode envelope-like proteins. Genetics 1998; 149:703-15.
    • (1998) Genetics , vol.149 , pp. 703-715
    • Wright, D.A.1    Voytas, D.F.2
  • 4
    • 0036143466 scopus 로고    scopus 로고
    • Athila4 of Arabidopsis and Calypso of soybean define a lineage of endogenous plant retroviruses
    • Wright DA, Voytas DF. Athila4 of Arabidopsis and Calypso of soybean define a lineage of endogenous plant retroviruses. Genome Res 2002; 12:122-31.
    • (2002) Genome Res , vol.12 , pp. 122-131
    • Wright, D.A.1    Voytas, D.F.2
  • 5
    • 0028053175 scopus 로고
    • Retroviruses in invertebrates: The gypsy retrotransposon is apparently an infectious retrovirus of Drosophila melanogaster
    • Kim A, Terzian C, Santamaria P, Pelisson A, Purd'homme N, Bucheton A. Retroviruses in invertebrates: the gypsy retrotransposon is apparently an infectious retrovirus of Drosophila melanogaster. Proc Natl Acad Sci USA 1994; 91:1285-9.
    • (1994) Proc Natl Acad Sci USA , vol.91 , pp. 1285-1289
    • Kim, A.1    Terzian, C.2    Santamaria, P.3    Pelisson, A.4    Purd'homme, N.5    Bucheton, A.6
  • 6
    • 0027992609 scopus 로고
    • An env-like protein encoded by a Drosophila retroelement: Evidence that gypsy is an infectious retrovirus
    • Song SU, Gerasimova T, Kurkulos M, Boeke JD, Corces VG. An env-like protein encoded by a Drosophila retroelement: evidence that gypsy is an infectious retrovirus. Genes Dev 1994; 8:2046-57.
    • (1994) Genes Dev , vol.8 , pp. 2046-2057
    • Song, S.U.1    Gerasimova, T.2    Kurkulos, M.3    Boeke, J.D.4    Corces, V.G.5
  • 7
    • 0035214001 scopus 로고    scopus 로고
    • Envelope-class retrovirus-like elements are widespread, transcribed and spliced, and insertionally polymorphic in plants
    • Vicient CM, Kalendar R, Schulman AH. Envelope-class retrovirus-like elements are widespread, transcribed and spliced, and insertionally polymorphic in plants. Genome Res 2001; 11:2041-9.
    • (2001) Genome Res , vol.11 , pp. 2041-2049
    • Vicient, C.M.1    Kalendar, R.2    Schulman, A.H.3
  • 9
    • 0033611157 scopus 로고    scopus 로고
    • RNA-binding proteins TIA-1 and TIAR link the phosphorylation of eIF-2alpha to the assembly of mammalian stress granules
    • Kedersha NL, Gupta M, Li W, Miller I, Anderson P. RNA-binding proteins TIA-1 and TIAR link the phosphorylation of eIF-2alpha to the assembly of mammalian stress granules. J Cell Biol 1999; 147:1431-42.
    • (1999) J Cell Biol , vol.147 , pp. 1431-1442
    • Kedersha, N.L.1    Gupta, M.2    Li, W.3    Miller, I.4    Anderson, P.5
  • 10
    • 0036888883 scopus 로고    scopus 로고
    • Cell proteins TIA-1 and TIAR interact with the 3' stem-loop of the West Nile virus complementary minus-strand RNA and facilitate virus replication
    • Li W, Li Y, Kedersha N, Anderson P, Emara M, Swiderek KM, et al. Cell proteins TIA-1 and TIAR interact with the 3' stem-loop of the West Nile virus complementary minus-strand RNA and facilitate virus replication. J Virol 2002; 76:11989-2000.
    • (2002) J Virol , vol.76 , pp. 11989-12000
    • Li, W.1    Li, Y.2    Kedersha, N.3    Anderson, P.4    Emara, M.5    Swiderek, K.M.6
  • 11
    • 34547456097 scopus 로고    scopus 로고
    • Interaction of TIA-1/TIAR with West Nile and dengue virus products in infected cells interferes with stress granule formation and processing body assembly
    • Emara MM, Brinton MA. Interaction of TIA-1/TIAR with West Nile and dengue virus products in infected cells interferes with stress granule formation and processing body assembly. Proc Natl Acad Sci USA 2007; 104:9041-6.
    • (2007) Proc Natl Acad Sci USA , vol.104 , pp. 9041-9046
    • Emara, M.M.1    Brinton, M.A.2
  • 12
    • 66149148261 scopus 로고    scopus 로고
    • Splicing of the large intron present in the nonstructural gene of minute virus of mice is governed by TIA-1/TIAR binding downstream of the nonconsensus donor
    • Choi EY, Pintel D. Splicing of the large intron present in the nonstructural gene of minute virus of mice is governed by TIA-1/TIAR binding downstream of the nonconsensus donor. J Virol 2009; 83:6306-11.
    • (2009) J Virol , vol.83 , pp. 6306-6311
    • Choi, E.Y.1    Pintel, D.2
  • 13
    • 77950343335 scopus 로고    scopus 로고
    • Adenovirus VA RNA-derived miRNAs target cellular genes involved in cell growth, gene expression and DNA repair
    • Aparicio O, Carnero E, Abad X, Razquin N, Guruceaga E, Segura V, et al. Adenovirus VA RNA-derived miRNAs target cellular genes involved in cell growth, gene expression and DNA repair. Nucleic Acids Res 2009; 38:750-63.
    • (2009) Nucleic Acids Res , vol.38 , pp. 750-763
    • Aparicio, O.1    Carnero, E.2    Abad, X.3    Razquin, N.4    Guruceaga, E.5    Segura, V.6
  • 15
    • 28744453801 scopus 로고    scopus 로고
    • Insertion bias and purifying selection of retrotransposons in the Arabidopsis thaliana genome
    • Pereira V. Insertion bias and purifying selection of retrotransposons in the Arabidopsis thaliana genome. Genome Biol 2004; 5:79.
    • (2004) Genome Biol , vol.5 , pp. 79
    • Pereira, V.1
  • 16
    • 0034649566 scopus 로고    scopus 로고
    • Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
    • Arabidopsis Genome Initiative
    • Arabidopsis Genome Initiative. Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 2000; 408:796-815.
    • (2000) Nature , vol.408 , pp. 796-815
  • 17
    • 27944499244 scopus 로고    scopus 로고
    • Genomic neighborhoods for Arabidopsis retrotransposons: A role for targeted integration in the distribution of the Metaviridae
    • Peterson-Burch BD, Nettleton D, Voytas DF. Genomic neighborhoods for Arabidopsis retrotransposons: a role for targeted integration in the distribution of the Metaviridae. Genome Biol 2004; 5:78.
    • (2004) Genome Biol , vol.5 , pp. 78
    • Peterson-Burch, B.D.1    Nettleton, D.2    Voytas, D.F.3
  • 18
    • 34948853236 scopus 로고    scopus 로고
    • Large-scale polymorphism of heterochromatic repeats in the DNA of Arabidopsis thaliana
    • Davison J, Tyagi A, Comai L. Large-scale polymorphism of heterochromatic repeats in the DNA of Arabidopsis thaliana. BMC Plant Biol 2007; 7:44.
    • (2007) BMC Plant Biol , vol.7 , pp. 44
    • Davison, J.1    Tyagi, A.2    Comai, L.3
  • 20
    • 0037072666 scopus 로고    scopus 로고
    • Dependence of heterochromatic histone H3 methylation patterns on the Arabidopsis gene DDM1
    • Gendrel AV, Lippman Z, Yordan C, Colot V, Martienssen RA. Dependence of heterochromatic histone H3 methylation patterns on the Arabidopsis gene DDM1. Science 2002; 297:1871-3.
    • (2002) Science , vol.297 , pp. 1871-1873
    • Gendrel, A.V.1    Lippman, Z.2    Yordan, C.3    Colot, V.4    Martienssen, R.A.5
  • 23
  • 26
    • 59349118366 scopus 로고    scopus 로고
    • Epigenetic reprogramming and small RNA silencing of transposable elements in pollen
    • Slotkin RK, Vaughn M, Borges F, Tanurdzic M, Becker JD, Feijo JA, et al. Epigenetic reprogramming and small RNA silencing of transposable elements in pollen. Cell 2009; 136:461-72.
    • (2009) Cell , vol.136 , pp. 461-472
    • Slotkin, R.K.1    Vaughn, M.2    Borges, F.3    Tanurdzic, M.4    Becker, J.D.5    Feijo, J.A.6
  • 28
    • 77950342461 scopus 로고    scopus 로고
    • The Arabidopsis RNA-directed DNA methylation argonautes functionally diverge based on their expression and interaction with target loci
    • Havecker ER, Wallbridge LM, Hardcastle TJ, Bush MS, Kelly KA, Dunn RM, et al. The Arabidopsis RNA-directed DNA methylation argonautes functionally diverge based on their expression and interaction with target loci. Plant Cell 2010; 22:321-34.
    • (2010) Plant Cell , vol.22 , pp. 321-334
    • Havecker, E.R.1    Wallbridge, L.M.2    Hardcastle, T.J.3    Bush, M.S.4    Kelly, K.A.5    Dunn, R.M.6
  • 29
    • 33751510617 scopus 로고    scopus 로고
    • Epigenetic regulation of transcription in intermediate heterochromatin
    • Habu Y, Mathieu O, Tariq M, Probst AV, Smathajitt C, Zhu T, et al. Epigenetic regulation of transcription in intermediate heterochromatin. EMBO Rep 2006; 7:1279-84.
    • (2006) EMBO Rep , vol.7 , pp. 1279-1284
    • Habu, Y.1    Mathieu, O.2    Tariq, M.3    Probst, A.V.4    Smathajitt, C.5    Zhu, T.6
  • 30
    • 11144358325 scopus 로고    scopus 로고
    • BRU1, a novel link between responses to DNA damage and epigenetic gene silencing in Arabidopsis
    • Takeda S, Tadele Z, Hofmann I, Probst AV, Angelis KJ, Kaya H, et al. BRU1, a novel link between responses to DNA damage and epigenetic gene silencing in Arabidopsis. Genes Dev 2004; 18:782-93.
    • (2004) Genes Dev , vol.18 , pp. 782-793
    • Takeda, S.1    Tadele, Z.2    Hofmann, I.3    Probst, A.V.4    Angelis, K.J.5    Kaya, H.6
  • 31
    • 33751533880 scopus 로고    scopus 로고
    • MOM1 mediates DNA-methylation-independent silencing of repetitive sequences in Arabidopsis
    • Vaillant I, Schubert I, Tourmente S, Mathieu O. MOM1 mediates DNA-methylation-independent silencing of repetitive sequences in Arabidopsis. EMBO Rep 2006; 7:1273-8.
    • (2006) EMBO Rep , vol.7 , pp. 1273-1278
    • Vaillant, I.1    Schubert, I.2    Tourmente, S.3    Mathieu, O.4
  • 32
    • 0038670503 scopus 로고    scopus 로고
    • Maintenance of CpG methylation is essential for epigenetic inheritance during plant gametogenesis
    • Saze H, Mittelsten Scheid O, Paszkowski J. Maintenance of CpG methylation is essential for epigenetic inheritance during plant gametogenesis. Nat Genet 2003; 34:65-9.
    • (2003) Nat Genet , vol.34 , pp. 65-69
    • Saze, H.1    Mittelsten Scheid, O.2    Paszkowski, J.3
  • 33
    • 64749088622 scopus 로고    scopus 로고
    • Epigenetic regulation, somatic homologous recombination, and abscisic acid signaling are influenced by DNA polymerase epsilon mutation in Arabidopsis
    • Yin H, Zhang X, Liu J, Wang Y, He J, Yang T, et al. Epigenetic regulation, somatic homologous recombination, and abscisic acid signaling are influenced by DNA polymerase epsilon mutation in Arabidopsis. Plant Cell 2009; 21:386-402.
    • (2009) Plant Cell , vol.21 , pp. 386-402
    • Yin, H.1    Zhang, X.2    Liu, J.3    Wang, Y.4    He, J.5    Yang, T.6
  • 34
    • 33846020965 scopus 로고    scopus 로고
    • The protein kinase TOUSLED is required for maintenance of transcriptional gene silencing in Arabidopsis
    • Wang Y, Liu J, Xia R, Wang J, Shen J, Cao R, et al. The protein kinase TOUSLED is required for maintenance of transcriptional gene silencing in Arabidopsis. EMBO Rep 2007; 8:77-83.
    • (2007) EMBO Rep , vol.8 , pp. 77-83
    • Wang, Y.1    Liu, J.2    Xia, R.3    Wang, J.4    Shen, J.5    Cao, R.6
  • 35
    • 33646885228 scopus 로고    scopus 로고
    • Arabidopsis displays centromeric DNA hypomethylation and cytological alterations of heterochromatin upon attack by Pseudomonas syringae
    • Pavet V, Quintero C, Cecchini NM, Rosa AL, Alvarez ME. Arabidopsis displays centromeric DNA hypomethylation and cytological alterations of heterochromatin upon attack by Pseudomonas syringae. Mol Plant Microbe Interact 2006; 19:577-87.
    • (2006) Mol Plant Microbe Interact , vol.19 , pp. 577-587
    • Pavet, V.1    Quintero, C.2    Cecchini, N.M.3    Rosa, A.L.4    Alvarez, M.E.5
  • 36
    • 65349164119 scopus 로고    scopus 로고
    • Geminivirus AL2 and L2 proteins suppress transcriptional gene silencing and cause genome-wide reductions in cytosine methylation
    • Buchmann RC, Asad S, Wolf JN, Mohannath G, Bisaro DM. Geminivirus AL2 and L2 proteins suppress transcriptional gene silencing and cause genome-wide reductions in cytosine methylation. J Virol 2009; 83:5005-13.
    • (2009) J Virol , vol.83 , pp. 5005-5013
    • Buchmann, R.C.1    Asad, S.2    Wolf, J.N.3    Mohannath, G.4    Bisaro, D.M.5
  • 38
    • 77249170184 scopus 로고    scopus 로고
    • Establishing, maintaining and modifying DNA methylation patterns in plants and animals
    • Law JA, Jacobsen SE. Establishing, maintaining and modifying DNA methylation patterns in plants and animals. Nature Reviews Genetics 2010; 11:204-20.
    • (2010) Nature Reviews Genetics , vol.11 , pp. 204-220
    • Law, J.A.1    Jacobsen, S.E.2
  • 39
    • 55449108640 scopus 로고    scopus 로고
    • Differential regulation of strand-specific transcripts from Arabidopsis centromeric satellite repeats
    • May BP, Lippman ZB, Fang Y, Spector DL, Martienssen RA. Differential regulation of strand-specific transcripts from Arabidopsis centromeric satellite repeats. PLoS Genet 2005; 1:79.
    • (2005) PLoS Genet , vol.1 , pp. 79
    • May, B.P.1    Lippman, Z.B.2    Fang, Y.3    Spector, D.L.4    Martienssen, R.A.5
  • 41
    • 0030036941 scopus 로고    scopus 로고
    • Identification and distribution of seven classes of middle-repetitive DNA in the Arabidopsis thaliana genome
    • Thompson HL, Schmidt R, Dean C. Identification and distribution of seven classes of middle-repetitive DNA in the Arabidopsis thaliana genome. Nucleic Acids Res 1996; 24:3017-22.
    • (1996) Nucleic Acids Res , vol.24 , pp. 3017-3022
    • Thompson, H.L.1    Schmidt, R.2    Dean, C.3
  • 44
    • 33745668459 scopus 로고    scopus 로고
    • Parent-dependent loss of gene silencing during interspecies hybridization
    • Josefsson C, Dilkes B, Comai L. Parent-dependent loss of gene silencing during interspecies hybridization. Curr Biol 2006; 16:1322-8.
    • (2006) Curr Biol , vol.16 , pp. 1322-1328
    • Josefsson, C.1    Dilkes, B.2    Comai, L.3
  • 46
    • 0036016437 scopus 로고    scopus 로고
    • Centromeric localization and adaptive evolution of an Arabidopsis histone H3 variant
    • Talbert PB, Masuelli R, Tyagi AP, Comai L, Henikoff S. Centromeric localization and adaptive evolution of an Arabidopsis histone H3 variant. Plant Cell 2002; 14:1053-66.
    • (2002) Plant Cell , vol.14 , pp. 1053-1066
    • Talbert, P.B.1    Masuelli, R.2    Tyagi, A.P.3    Comai, L.4    Henikoff, S.5
  • 47
    • 28444464041 scopus 로고    scopus 로고
    • DICER-LIKE 4 is required for RNA interference and produces the 21-nucleotide small interfering RNA component of the plant cell-to-cell silencing signal
    • Dunoyer P, Himber C, Voinnet O. DICER-LIKE 4 is required for RNA interference and produces the 21-nucleotide small interfering RNA component of the plant cell-to-cell silencing signal. Nat Genet 2005; 37:1356-60.
    • (2005) Nat Genet , vol.37 , pp. 1356-1360
    • Dunoyer, P.1    Himber, C.2    Voinnet, O.3
  • 49
    • 70049096990 scopus 로고    scopus 로고
    • Induction of RNA-directed DNA methylation upon decondensation of constitutive heterochromatin
    • Schoft VK, Chumak N, Mosiolek M, Slusarz L, Komnenovic V, Brownfield L, et al. Induction of RNA-directed DNA methylation upon decondensation of constitutive heterochromatin. EMBO Rep 2009; 10:1015-21.
    • (2009) EMBO Rep , vol.10 , pp. 1015-1021
    • Schoft, V.K.1    Chumak, N.2    Mosiolek, M.3    Slusarz, L.4    Komnenovic, V.5    Brownfield, L.6
  • 50
    • 35448980747 scopus 로고    scopus 로고
    • Transcript profiling of the hypomethylated hog1 mutant of Arabidopsis
    • Jordan ND, West JP, Bottley A, Sheikh M, Furner I. Transcript profiling of the hypomethylated hog1 mutant of Arabidopsis. Plant Mol Bio 2007; 65: 571-86.
    • (2007) Plant Mol Bio , vol.65 , pp. 571-586
    • Jordan, N.D.1    West, J.P.2    Bottley, A.3    Sheikh, M.4    Furner, I.5
  • 51
    • 0037041422 scopus 로고    scopus 로고
    • Control of CpNpG DNA methylation by KRYPTONITE histone H3 methyltranserase
    • Jackson JP, Lindroth AM, Cao X, Jacobsen SE. Control of CpNpG DNA methylation by KRYPTONITE histone H3 methyltranserase. Nature 2002; 416:556-60.
    • (2002) Nature , vol.416 , pp. 556-560
    • Jackson, J.P.1    Lindroth, A.M.2    Cao, X.3    Jacobsen, S.E.4
  • 52
    • 17844387167 scopus 로고    scopus 로고
    • Pivotal role of AtSUVH2 in heterochromatic histone methylation and gene silencing in Arabidopsis
    • Naumann K, Fischer A, Krauss V, Phalke S, Irmler K, Hause G, et al. Pivotal role of AtSUVH2 in heterochromatic histone methylation and gene silencing in Arabidopsis. EMBO J 2005; 24:1418-29.
    • (2005) EMBO J , vol.24 , pp. 1418-1429
    • Naumann, K.1    Fischer, A.2    Krauss, V.3    Phalke, S.4    Irmler, K.5    Hause, G.6
  • 53
    • 27644449700 scopus 로고    scopus 로고
    • Arabidopsis RPA2: A genetic link among transcriptional gene silencing, DNA repair and DNA replication
    • Elmayan T, Proux F, Vaucheret H. Arabidopsis RPA2: a genetic link among transcriptional gene silencing, DNA repair and DNA replication. Current Biology 2005; 15:1919-25.
    • (2005) Current Biology , vol.15 , pp. 1919-1925
    • Elmayan, T.1    Proux, F.2    Vaucheret, H.3
  • 54
    • 33645730627 scopus 로고    scopus 로고
    • ROR1/RPA2A, a putative replication protein A2, functions in epigenetic gene silencing and in regulation of meristem development in Arabidopsis
    • Xia R, Wang J, Liu C, Wang Y, Wang Y, Zhai J, et al. ROR1/RPA2A, a putative replication protein A2, functions in epigenetic gene silencing and in regulation of meristem development in Arabidopsis. Plant Cell 2006; 18:85-103.
    • (2006) Plant Cell , vol.18 , pp. 85-103
    • Xia, R.1    Wang, J.2    Liu, C.3    Wang, Y.4    Wang, Y.5    Zhai, J.6


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