The Arabidopsis thaliana genome contains at least 29 active genes encoding SET domain proteins that can be assigned to four evolutionarily conserved classes

Nucleic Acids Research

Volumn 29, Issue 21, 2001, Pages 4319-4333

  Baumbusch, Lars O ^a   Thorstensen, Tage ^a   Krauss, Veiko ^b,c   Fischer, Andreas ^b   Naumann, Kathrin ^b   Assalkhou, Reza ^a   Schulz, Ingo ^b   Reuter, Gunter ^b   Aalen, Reidunn B ^a  

^a UNIVERSITY OF OSLO   (Norway)

^b MARTIN LUTHER UNIVERSITY HALLE WITTENBERG   (Germany)

^c UNIVERSITY OF LEIPZIG   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID; CHROMOSOME PROTEIN; COMPLEMENTARY DNA; CYSTEINE;

ARABIDOPSIS; ARTICLE; CELL NUCLEUS; CLASSIFICATION; CONTROLLED STUDY; DEVELOPMENT; DROSOPHILA; EVOLUTION; GENE ACTIVITY; GENE DUPLICATION; GENE EXPRESSION REGULATION; GENETIC CONSERVATION; INTRON; MAMMAL; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; PLANT; PRIORITY JOURNAL; PROTEIN DOMAIN; PROTEIN LOCALIZATION; PROTEIN MOTIF; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SEQUENCE HOMOLOGY; SIGNAL TRANSDUCTION; YEAST;

ARABIDOPSIS; ARABIDOPSIS THALIANA; DROSOPHILA; EMBRYOPHYTA; MAMMALIA;

EID: 0035503921     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/29.21.4319     Document Type: Article

References (63)

1. Position-effect variegation in Drosophila
2. Unfolding the mysteries of heterochromatin
3. Heterochromatin and gene expression in Drosophila
4. Functional mammalian homologs of the Drosophila PEV-modifier Su(var)3-9 encode centromere-associated proteins which complex with the heterochromatin component M31
5. Functional analysis of mouse polycomb group genes
6. Position effect variegation and chromatin proteins
7. Chromatin-silencing mechanisms in Drosophila maintain patterns of gene expression
8. The protein encoded by the Drosophila position-effect variegation suppressor gene Su(var)3-9 combines domains of antagonistic regulators of homeotic gene complexes
9. Polycombing the genome: PcG, trxG and chromatin silencing
10. SET domain proteins modulate chromatin domains in eu- and heterochromatin
11. A polycomb-group gene regulates homeotic gene expression in Arabidopsis
12. Maternal control of embryogenesis by MEDEA, a Polycomb group gene in Arabidopsis
13. Expression and parent-of-origin effects for FIS2, MEA and FIE in the endosperm and embryo of developing Arabidopsis seeds
14. Maintenance of genomic imprinting at the Arabidopsis MEDEA locus requires zygotic DDM1 activity
15. Mammalian homologs of the Polycomb-group gene enhancer of zeste mediate gene silencing in Drosophila heterochromatin and at S. cerevisiae telomeres
16. E(z): A Polycomb group gene or a trithorax group gene?
17. The murine polycomb-group genes Ezh1 and Ezh2 map close to Hox gene clusters on mouse chromosomes 11 and 6
18. Related chromosome binding sites for zeste, suppressors of zeste and polycomb group proteins in Drosophila and their dependence on enhancer of zeste function
19. The chromo and SET domains of the Clr4 protein are essential for silencing in fission yeast
20. Regulation of chromatin structure by site-specific histone H3 methyltransferases
21. SET-domain containing protein, G9a, is a novel lysine-preferring mammalian histone methylthansferase with hyperactivity and specific selectivity to lysines 9 and 27 of histone H3
22. Role of histone H3 lysine 9 methylation in epigenetic control of heterochromatin assembly
23. The bithorax complex is regulated by trithorax earlier during Drosophila embryogenesis than is the Antennapedia complex, correlating with a bithorax-like expression pattern of distinct early trithorax transcripts
24. The Drosophila trithorax proteins contain a novel variant of the nuclear receptor type DNA binding domain and an ancient conserved motif found in other chromosomal proteins
25. Biochemical analyses of the AF10 protein: The extended LAP/PHD-finger mediates oligomerisation
26. The PHD finger: Implications for chromatin-mediated transcriptional regulation
27. Two Arabidopsis homologs of the animal trithorax genes: A new structural domain is a signature feature of the trithorax gene family
28. huASH1 protein, a putative transcription factor encoded by a human homolog of the Drosophila ash1 gene, localizes to both nuclei and cell-cell tight junctions
29. The Drosophila ash1 gene product, which is localized at specific sites on polytene chromosomes, contains a SET domain and a PHD finger
30. Epigenetic developmental mechanisms in plants: Molecules and targets of plant epigenetic regulation
31. Gene silencing and DNA methylation processes
32. Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
33. Recognition of the bacterial avirulence protein AvrBs3 occurs inside the host plant cell
34. The A. thaliana disease resistance gene RPS2 encodes a protein containing a nucleotide-binding site and leucine-rich repeats
35. Soluble, highly fluorescent variants of green fluorescent protein (GFP) for use in higher plants
36. Nuclear localization signal(s) required for nuclear targeting of the maize regulatory protein Opaque-2
37. Control of fertilization-independent endosperm development by the MEDEA polycomb gene in Arabidopsis
38. The PWWP domain: A potential protein-protein interaction domain in nuclear proteins influencing differentiation?
39. The fission yeast homolog of Orc4p binds to replication origin DNA via multiple AT-hooks
40. The evolutionary fate and consequences of duplicate genes
41. The evolution of plant nuclear genes
42. Characterization of SRp46, a novel human SR splicing factor encoded by a PR264/SC35 retropseudogene
43. The ancient source of a distinct gene family encoding proteins featuring RING and C3H zinc-finger motifs with abundant expression in developing brain and nervous system
44. Testis-specific expression of an intronless gene encoding a human poly(A) polymerase
45. HMGN4, a newly discovered nucleosome-binding protein encoded by an intronless gene
46. Characterization of mouse peroxiredoxin I genomic DNA and its expression
47. Mouse U2af1-rs1 is a neomorphic imprinted gene
48. cDNA cloning, chromosome assignment and genomic structure of a human gene encoding a novel member of the RBM family
49. A set of highly conserved RNA-binding proteins, alphaCP-1 and alphaCP-2, implicated in mRNA stabilization, are coexpressed from an intronless gene and its intron-containing paralog
50. Retrotransposition of glycerol kinase-related genes from the X chromosome to autosomes: Functional and evolutionary aspects
51. Retroposition of autosomal mRNA yielded testis-specific gene family on human Y chromosome
52. Expressed retrotransposed 5S rRNA genes in the mouse and rat genomes
53. AT-hook motifs identified in a wide variety of DNA-binding proteins
54. Transcription factors and their genes in higher plants-functional domains, evolution and regulation
55. The Drosophila esc and E(z) proteins are direct partners in polycomb group-mediated repression
56. Self-association of the SET domains of human ALL-1 and of Drosophila TRITHORAX and ASH1 proteins
57. Cancer-predisposing mutations within the RING domain of BRCA1: Loss of ubiquitin protein ligase activity and protection from radiation hypersensitivity
58. Structural and mechanistic basis of immunity toward endonuclease colicins
59. Methylation of histone H3 lysine 9 creates a binding site for HP1 proteins
60. Structure and function of a human TAFII250 double bromodomain module
61. The genome sequence of Drosophila melanogaster
62. Mitotic phosphorylation of SUV39H1, a novel component of active centromeres, coincides with transient accumulation at mammalian centromeres
63. Cloning and characterization of chloroplast and cytosolic forms of cyclophilin from Arabidopsis thaliana