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Volumn 106, Issue 3, 2009, Pages 941-946

PolV(PolIVb) function in RNA-directed DNA methylation requires the conserved active site and an additional plant-specific subunit

Author keywords

Arabidopsis; RNA polymerase; Silencing

Indexed keywords

MICRORNA; PLANT DNA; PLANT RNA; RNA POLYMERASE;

EID: 58849120615     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.0810310106     Document Type: Article
Times cited : (64)

References (35)
  • 1
    • 0034671288 scopus 로고    scopus 로고
    • RNA polymerase: Structural similarities between bacterial RNA polymerase and eukaryotic RNA polymerase II
    • Ebright RH (2000) RNA polymerase: Structural similarities between bacterial RNA polymerase and eukaryotic RNA polymerase II. J Mol Biol 304:687-698.
    • (2000) J Mol Biol , vol.304 , pp. 687-698
    • Ebright, R.H.1
  • 2
    • 0036468364 scopus 로고    scopus 로고
    • Multisubunit RNA polymerases
    • Cramer P (2002) Multisubunit RNA polymerases. Curr Opin Struct Biol 12:89-97.
    • (2002) Curr Opin Struct Biol , vol.12 , pp. 89-97
    • Cramer, P.1
  • 3
    • 39149142997 scopus 로고    scopus 로고
    • The X-ray crystal structure of RNA polymerase from Archaea
    • Hirata A, Klein BJ, Murakami KS (2008) The X-ray crystal structure of RNA polymerase from Archaea. Nature 451:851-854.
    • (2008) Nature , vol.451 , pp. 851-854
    • Hirata, A.1    Klein, B.J.2    Murakami, K.S.3
  • 4
    • 33646137364 scopus 로고    scopus 로고
    • The diversity of RNA silencing pathways in plants
    • Brodersen P, Voinnet O (2006) The diversity of RNA silencing pathways in plants. Trends Genet 22:268-280.
    • (2006) Trends Genet , vol.22 , pp. 268-280
    • Brodersen, P.1    Voinnet, O.2
  • 5
    • 10644237968 scopus 로고    scopus 로고
    • RNAi-mediated pathways in the nucleus
    • Matzke MA, Birchler JA (2005) RNAi-mediated pathways in the nucleus. Nat Rev Genet 6:24-35.
    • (2005) Nat Rev Genet , vol.6 , pp. 24-35
    • Matzke, M.A.1    Birchler, J.A.2
  • 6
    • 19344374219 scopus 로고    scopus 로고
    • Genetic and functional diversification of small RNA pathways in plants
    • Xie Z, et al. (2004) Genetic and functional diversification of small RNA pathways in plants. PLoS Biol 2:E104.
    • (2004) PLoS Biol , vol.2
    • Xie, Z.1
  • 7
    • 33745690105 scopus 로고    scopus 로고
    • The Arabidopsis chromatin-modifying nuclear siRNA pathway involves a nucleolar RNA processing center
    • Pontes O, et al. (2006) The Arabidopsis chromatin-modifying nuclear siRNA pathway involves a nucleolar RNA processing center. Cell 126:79-92.
    • (2006) Cell , vol.126 , pp. 79-92
    • Pontes, O.1
  • 8
    • 33750435234 scopus 로고    scopus 로고
    • Distinct catalytic and non-catalytic roles of ARGONAUTE4 in RNA-directed DNA methylation
    • Qi Y, et al. (2006) Distinct catalytic and non-catalytic roles of ARGONAUTE4 in RNA-directed DNA methylation. Nature 443:1008-1012.
    • (2006) Nature , vol.443 , pp. 1008-1012
    • Qi, Y.1
  • 9
    • 33947586544 scopus 로고    scopus 로고
    • Role of Arabidopsis AGO6 in siRNA accumulation, DNA methylation and transcriptional gene silencing
    • Zheng X, Zhu J, Kapoor A, Zhu JK (2007) Role of Arabidopsis AGO6 in siRNA accumulation, DNA methylation and transcriptional gene silencing. EMBO J 26:1691-1701.
    • (2007) EMBO J , vol.26 , pp. 1691-1701
    • Zheng, X.1    Zhu, J.2    Kapoor, A.3    Zhu, J.K.4
  • 10
    • 2342505910 scopus 로고    scopus 로고
    • Involvement of putative SNF2 chromatin remodeling protein DRD1 in RNA-directed DNA methylation
    • Kanno T, et al. (2004) Involvement of putative SNF2 chromatin remodeling protein DRD1 in RNA-directed DNA methylation. Curr Biol 14:801-805.
    • (2004) Curr Biol , vol.14 , pp. 801-805
    • Kanno, T.1
  • 11
    • 34347382532 scopus 로고    scopus 로고
    • An SNF2 protein associated with nuclear RNA silencing and the spread of a silencing signal between cells in Arabidopsis
    • Smith LM, et al. (2007) An SNF2 protein associated with nuclear RNA silencing and the spread of a silencing signal between cells in Arabidopsis. Plant Cell 19:1507-1521.
    • (2007) Plant Cell , vol.19 , pp. 1507-1521
    • Smith, L.M.1
  • 12
    • 14844295120 scopus 로고    scopus 로고
    • RNA polymerase IV directs silencing of endogenous DNA
    • Herr AJ, Jensen MB, Dalmay T, Baulcombe DC (2005) RNA polymerase IV directs silencing of endogenous DNA. Science 308:118-120.
    • (2005) Science , vol.308 , pp. 118-120
    • Herr, A.J.1    Jensen, M.B.2    Dalmay, T.3    Baulcombe, D.C.4
  • 13
    • 14844302397 scopus 로고    scopus 로고
    • Plant nuclear RNA polymerase IV mediates siRNA and DNA methylation-dependent heterochromatin formation
    • Onodera Y, et al. (2005) Plant nuclear RNA polymerase IV mediates siRNA and DNA methylation-dependent heterochromatin formation. Cell 120:613-622.
    • (2005) Cell , vol.120 , pp. 613-622
    • Onodera, Y.1
  • 14
    • 22844447304 scopus 로고    scopus 로고
    • Atypical RNA polymerase subunits required for RNA-directed DNA methylation
    • Kanno T, et al. (2005) Atypical RNA polymerase subunits required for RNA-directed DNA methylation. Nat Genet 37:761-765.
    • (2005) Nat Genet , vol.37 , pp. 761-765
    • Kanno, T.1
  • 15
    • 24344433177 scopus 로고    scopus 로고
    • Reinforcement of silencing at transposons and highly repeated sequences requires the concerted action of two distinct RNA polymerases IV in Arabidopsis
    • Pontier D, et al. (2005) Reinforcement of silencing at transposons and highly repeated sequences requires the concerted action of two distinct RNA polymerases IV in Arabidopsis. Genes Dev 19:2030-2040.
    • (2005) Genes Dev , vol.19 , pp. 2030-2040
    • Pontier, D.1
  • 17
    • 33845887976 scopus 로고    scopus 로고
    • A multistep process gave rise to RNA polymerase IV of land plants
    • Luo J, Hall B (2007) A multistep process gave rise to RNA polymerase IV of land plants. J Mol Evol 64:101-112.
    • (2007) J Mol Evol , vol.64 , pp. 101-112
    • Luo, J.1    Hall, B.2
  • 18
    • 33745699398 scopus 로고    scopus 로고
    • An ARGONAUTE4-containing nuclear processing center colocalized with Cajal bodies in Arabidopsis thaliana
    • Li CF, et al. (2006) An ARGONAUTE4-containing nuclear processing center colocalized with Cajal bodies in Arabidopsis thaliana. Cell 126:93-106.
    • (2006) Cell , vol.126 , pp. 93-106
    • Li, C.F.1
  • 19
    • 42549096814 scopus 로고    scopus 로고
    • PolIVb influences RNA-directed DNA methylation independently of its role in siRNA biogenesis
    • Mosher RA, Schwach F, Studholme D, Baulcombe DC (2008) PolIVb influences RNA-directed DNA methylation independently of its role in siRNA biogenesis. Proc Natl Acad Sci USA 105:3145-3150.
    • (2008) Proc Natl Acad Sci USA , vol.105 , pp. 3145-3150
    • Mosher, R.A.1    Schwach, F.2    Studholme, D.3    Baulcombe, D.C.4
  • 20
    • 35348970326 scopus 로고    scopus 로고
    • Reiterated WG/GW motifs form functionally and evolutionarily conserved ARGONAUTE-binding platforms in RNAi-related components
    • El-Shami M, et al. (2007) Reiterated WG/GW motifs form functionally and evolutionarily conserved ARGONAUTE-binding platforms in RNAi-related components. Genes Dev 21:2539-2544.
    • (2007) Genes Dev , vol.21 , pp. 2539-2544
    • El-Shami, M.1
  • 21
    • 0033614429 scopus 로고    scopus 로고
    • Arabidopsis thaliana RNA polymerase II subunits related to yeast and human RPB5
    • Larkin RM, Hagen G, Guilfoyle TJ (1999) Arabidopsis thaliana RNA polymerase II subunits related to yeast and human RPB5. Gene 231:41-47.
    • (1999) Gene , vol.231 , pp. 41-47
    • Larkin, R.M.1    Hagen, G.2    Guilfoyle, T.J.3
  • 22
    • 0035827346 scopus 로고    scopus 로고
    • Structural basis of transcription: RNA polymerase II at 2.8 Å resolution
    • Cramer P, Bushnell DA, Kornberg RD (2001) Structural basis of transcription: RNA polymerase II at 2.8 Å resolution. Science 292:1863-1876.
    • (2001) Science , vol.292 , pp. 1863-1876
    • Cramer, P.1    Bushnell, D.A.2    Kornberg, R.D.3
  • 23
    • 0034612217 scopus 로고    scopus 로고
    • Crystal structure of RPB5, a universal eukaryotic RNA polymerase subunit and transcription factor interaction target
    • Todone F, Weinzierl RO, Brick P, Onesti S (2000) Crystal structure of RPB5, a universal eukaryotic RNA polymerase subunit and transcription factor interaction target. Proc Natl Acad Sci USA 97:6306-6310.
    • (2000) Proc Natl Acad Sci USA , vol.97 , pp. 6306-6310
    • Todone, F.1    Weinzierl, R.O.2    Brick, P.3    Onesti, S.4
  • 24
    • 0034711231 scopus 로고    scopus 로고
    • RNA polymerase I holoenzyme-promoter interactions
    • Saez-Vasquez J, Pikaard CS (2000) RNA polymerase I holoenzyme-promoter interactions. J Biol Chem 275:37173-37180.
    • (2000) J Biol Chem , vol.275 , pp. 37173-37180
    • Saez-Vasquez, J.1    Pikaard, C.S.2
  • 25
    • 0025739871 scopus 로고
    • RNA polymerase II
    • Young RA (1991) RNA polymerase II. Annu Rev Biochem 60:689-715.
    • (1991) Annu Rev Biochem , vol.60 , pp. 689-715
    • Young, R.A.1
  • 26
    • 33745561418 scopus 로고    scopus 로고
    • Endogenous targets of RNA-directed DNA methylation and PolIV in Arabidopsis
    • Huettel B, et al. (2006) Endogenous targets of RNA-directed DNA methylation and PolIV in Arabidopsis. EMBO J 25:2828-2836.
    • (2006) EMBO J , vol.25 , pp. 2828-2836
    • Huettel, B.1
  • 27
    • 0032428149 scopus 로고    scopus 로고
    • RNA polymerase subunit RPB5 plays a role in transcription activation
    • Miyao T, Woychik NA (1998) RNA polymerase subunit RPB5 plays a role in transcription activation. Proc Natl Acad Sci USA 95:15281-15286.
    • (1998) Proc Natl Acad Sci USA , vol.95 , pp. 15281-15286
    • Miyao, T.1    Woychik, N.A.2
  • 28
    • 0037543997 scopus 로고    scopus 로고
    • Unified two-metal mechanism of RNA synthesis and degradation by RNA polymerase
    • Sosunov V, et al. (2003) Unified two-metal mechanism of RNA synthesis and degradation by RNA polymerase. EMBO J 22:2234-2244.
    • (2003) EMBO J , vol.22 , pp. 2234-2244
    • Sosunov, V.1
  • 29
    • 0030730281 scopus 로고    scopus 로고
    • Trajectory of DNA in the RNA polymerase II transcription preinitiation complex
    • Kim T, et al. (1997) Trajectory of DNA in the RNA polymerase II transcription preinitiation complex. Proc Natl Acad Sci USA 94:12268-12273.
    • (1997) Proc Natl Acad Sci USA , vol.94 , pp. 12268-12273
    • Kim, T.1
  • 30
    • 0035827332 scopus 로고    scopus 로고
    • Structural basis of transcription: An RNA polymerase II elongation complex at 3.3 Å resolution
    • Gnatt AL, Cramer P, Fu J, Bushnell DA, Kornberg RD (2001) Structural basis of transcription: An RNA polymerase II elongation complex at 3.3 Å resolution. Science 292:1876-1882.
    • (2001) Science , vol.292 , pp. 1876-1882
    • Gnatt, A.L.1    Cramer, P.2    Fu, J.3    Bushnell, D.A.4    Kornberg, R.D.5
  • 31
    • 0028878098 scopus 로고
    • Human RPB5, a subunit shared by eukaryotic nuclear RNA polymerases, binds human hepatitis B virus X protein and plays a role in X transactivation
    • Cheong JH, Yi MK, Lin Y, Murakami S (1995) Human RPB5, a subunit shared by eukaryotic nuclear RNA polymerases, binds human hepatitis B virus X protein and plays a role in X transactivation. EMBO J 14:143-150.
    • (1995) EMBO J , vol.14 , pp. 143-150
    • Cheong, J.H.1    Yi, M.K.2    Lin, Y.3    Murakami, S.4
  • 32
    • 33745469367 scopus 로고    scopus 로고
    • Rsc4 connects the chromatin remodeler RSC to RNA polymerases
    • Soutourina J, et al. (2006) Rsc4 connects the chromatin remodeler RSC to RNA polymerases. Mol Cell Biol 26:4920-4933.
    • (2006) Mol Cell Biol , vol.26 , pp. 4920-4933
    • Soutourina, J.1
  • 33
    • 33645076499 scopus 로고    scopus 로고
    • Evolutionary genomics of nucleocytoplasmic large DNA viruses
    • Iyer LM, Balaji S, Koonin EV, Aravind L (2006) Evolutionary genomics of nucleocytoplasmic large DNA viruses. Virus Res 117:156-184.
    • (2006) Virus Res , vol.117 , pp. 156-184
    • Iyer, L.M.1    Balaji, S.2    Koonin, E.V.3    Aravind, L.4
  • 34
    • 9344221087 scopus 로고    scopus 로고
    • Mapping of catalytic residues in the RNA polymerase active center
    • Zaychikov E, et al. (1996) Mapping of catalytic residues in the RNA polymerase active center. Science 273:107-109.
    • (1996) Science , vol.273 , pp. 107-109
    • Zaychikov, E.1
  • 35
    • 36448991500 scopus 로고    scopus 로고
    • Larkin MA, et al, 2007 Clustal W and Clustal X version 2.0. Bioinformatics 23:2947-2948
    • Larkin MA, et al. (2007) Clustal W and Clustal X version 2.0. Bioinformatics 23:2947-2948.


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