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Volumn 23, Issue 24, 2009, Pages 2850-2860

Intergenic transcription by RNA polymerase II coordinates Pol IV and Pol V in siRNA-directed transcriptional gene silencing in Arabidopsis

Author keywords

DNA methylation; Noncoding transcripts; RNA polymerase; SiRNA; Transcriptional gene silencing

Indexed keywords

ARGONAUTE PROTEIN; DNA POLYMERASE; DNA POLYMERASE IV; DNA POLYMERASE V; MOLECULAR SCAFFOLD; RNA POLYMERASE II; SILENT INFORMATION REGULATOR PROTEIN; SMALL INTERFERING RNA; SPACER DNA; UNCLASSIFIED DRUG;

EID: 72849124237     PISSN: 08909369     EISSN: 15495477     Source Type: Journal    
DOI: 10.1101/gad.1868009     Document Type: Article
Times cited : (223)

References (44)
  • 1
    • 0347033302 scopus 로고    scopus 로고
    • Role of the DRM and CMT3 Methyltransferases in RNA-Directed DNA Methylation
    • DOI 10.1016/j.cub.2003.11.052
    • Cao X, Aufsatz W, Zilberman D, Mette MF, Huang MS, Matzke M, Jacobsen SE. 2003. Role of the DRM and CMT3 methyltransferases in RNA-directed DNA methylation. Curr Biol 13: 2212-2217. (Pubitemid 38024949)
    • (2003) Current Biology , vol.13 , Issue.24 , pp. 2212-2217
    • Cao, X.1    Aufsatz, W.2    Zilberman, D.3    Mette, M.F.4    Huang, M.S.5    Matzke, M.6    Jacobsen, S.E.7
  • 3
    • 33644784770 scopus 로고    scopus 로고
    • Accumulation of unstable promoter-associated transcripts upon loss of the nuclear exosome subunit Rrp6p in Saccharomyces cerevisiae
    • Davis CA, Ares M Jr. 2006. Accumulation of unstable promoter-associated transcripts upon loss of the nuclear exosome subunit Rrp6p in Saccharomyces cerevisiae. Proc Natl Acad Sci 103: 3262-3267.
    • (2006) Proc Natl Acad Sci , vol.103 , pp. 3262-3267
    • Davis, C.A.1    Ares Jr., M.2
  • 4
  • 5
    • 33745454548 scopus 로고    scopus 로고
    • Locus-specific control of DNA methylation by the Arabidopsis SUVH5 histone methyltransferase
    • DOI 10.1105/tpc.106.041400
    • Ebbs ML, Bender J. 2006. Locus-specific control of DNA methylation by the Arabidopsis SUVH5 histone methyltransferase. Plant Cell 18: 1166-1176. (Pubitemid 43956123)
    • (2006) Plant Cell , vol.18 , Issue.5 , pp. 1166-1176
    • Ebbs, M.L.1    Bender, J.2
  • 6
    • 27944500697 scopus 로고    scopus 로고
    • H3 lysine 9 methylation is maintained on a transcribed inverted repeat by combined action of SUVH6 and SUVH4 methyltransferases
    • DOI 10.1128/MCB.25.23.10507-10515.2005
    • Ebbs ML, Bartee L, Bender J. 2005. H3 lysine 9 methylation is maintained on a transcribed inverted repeat by combined action of SUVH6 and SUVH4 methyltransferases. Mol Cell Biol 25: 10507-10515. (Pubitemid 41681971)
    • (2005) Molecular and Cellular Biology , vol.25 , Issue.23 , pp. 10507-10515
    • Ebbs, M.L.1    Bartee, L.2    Bender, J.3
  • 8
    • 0037009520 scopus 로고    scopus 로고
    • Two classes of short interfering RNA in RNA silencing
    • DOI 10.1093/emboj/cdf464
    • Hamilton A, Voinnet O, Chappell L, Baulcombe D. 2002. Two classes of short interfering RNA in RNA silencing. EMBO J 21: 4671-4679. (Pubitemid 34984354)
    • (2002) EMBO Journal , vol.21 , Issue.17 , pp. 4671-4679
    • Hamilton, A.1    Voinnet, O.2    Chappell, L.3    Baulcombe, D.4
  • 10
    • 14844295120 scopus 로고    scopus 로고
    • RNA polymerase IV directs silencing of endogenous DNA
    • DOI 10.1126/science.1106910
    • Herr AJ, Jensen MB, Dalmay T, Baulcombe DC. 2005. RNA polymerase IV directs silencing of endogenous DNA. Science 308: 118-120. (Pubitemid 40471011)
    • (2005) Science , vol.308 , Issue.5718 , pp. 118-120
    • Herr, A.J.1    Jensen, M.B.2    Dalmay, T.3    Baulcombe, D.C.4
  • 13
    • 33745561418 scopus 로고    scopus 로고
    • Endogenous targets of RNA-directed DNA methylation and Pol IV in Arabidopsis
    • DOI 10.1038/sj.emboj.7601150, PII 7601150
    • Huettel B, Kanno T, Daxinger L, Aufsatz W, Matzke AJ, Matzke M. 2006. Endogenous targets of RNA-directed DNA methylation and Pol IV in Arabidopsis. EMBO J 25: 2828-2836. (Pubitemid 43980389)
    • (2006) EMBO Journal , vol.25 , Issue.12 , pp. 2828-2836
    • Huettel, B.1    Kanno, T.2    Daxinger, L.3    Aufsatz, W.4    Matzke, A.J.M.5    Matzke, M.6
  • 14
    • 2342505910 scopus 로고    scopus 로고
    • Involvement of putative SNF2 chromatin remodeling protein DRD1 in RNA-directed DNA methylation
    • DOI 10.1016/j.cub.2004.04.037, PII S0960982204002672
    • Kanno T, Mette MF, Kreil DP, AufsatzW, Matzke M, Matzke AJ. 2004. Involvement of putative SNF2 chromatin remodeling protein DRD1 in RNA-directed DNA methylation. Curr Biol 14: 801-805. (Pubitemid 38583716)
    • (2004) Current Biology , vol.14 , Issue.9 , pp. 801-805
    • Kanno, T.1    Mette, M.F.2    Kreil, D.P.3    Aufsatz, W.4    Matzke, M.5    Matzke, A.J.M.6
  • 16
    • 42649089072 scopus 로고    scopus 로고
    • A structural-maintenance-of-chromosomes hinge domain-containing protein is required for RNA-directed DNA methylation
    • DOI 10.1038/ng.119, PII NG119
    • Kanno T, Bucher E, Daxinger L, Huettel B, Bohmdorfer G, Gregor W, Kreil DP, Matzke M, Matzke AJ. 2008. A structural-maintenance- of-chromosomes hinge domain-containing protein is required for RNA-directed DNA methylation. Nat Genet 40: 670-675. (Pubitemid 351601208)
    • (2008) Nature Genetics , vol.40 , Issue.5 , pp. 670-675
    • Kanno, T.1    Bucher, E.2    Daxinger, L.3    Huettel, B.4    Bohmdorfer, G.5    Gregor, W.6    Kreil, D.P.7    Matzke, M.8    Matzke, A.J.M.9
  • 19
    • 22344434734 scopus 로고    scopus 로고
    • Molecular Biology: RNA polymerase II is required for RNAi-dependent heterochromatin assembly
    • DOI 10.1126/science.1114955
    • Kato H, Goto DB, Martienssen RA, Urano T, Furukawa K, Murakami Y. 2005. RNA polymerase II is required for RNAi-dependent heterochromatin assembly. Science 309: 467-469. (Pubitemid 40994685)
    • (2005) Science , vol.309 , Issue.5733 , pp. 467-469
    • Kato, H.1    Goto, D.B.2    Martienssen, R.A.3    Urano, T.4    Furukawa, K.5    Murakami, Y.6
  • 21
    • 58849120615 scopus 로고    scopus 로고
    • PolV(PolIVb) function in RNA-directed DNA methylation requires the conserved active site and an additional plant-specific subunit
    • Lahmy S, Pontier D, Cavel E, Vega D, El-Shami M, Kanno T, Lagrange T. 2009. PolV(PolIVb) function in RNA-directed DNA methylation requires the conserved active site and an additional plant-specific subunit. Proc Natl Acad Sci 106: 941-946.
    • (2009) Proc Natl Acad Sci , vol.106 , pp. 941-946
    • Lahmy, S.1    Pontier, D.2    Cavel, E.3    Vega, D.4    El-Shami, M.5    Kanno, T.6    Lagrange, T.7
  • 23
    • 12244271065 scopus 로고    scopus 로고
    • An Arabidopsis SET domain protein required for maintenance but not establishment of DNA methylation
    • DOI 10.1093/emboj/cdf687
    • Malagnac F, Bartee L, Bender J. 2002. An Arabidopsis SET domain protein required for maintenance but not establishment of DNA methylation. EMBO J 21: 6842-6852. (Pubitemid 36014556)
    • (2002) EMBO Journal , vol.21 , Issue.24 , pp. 6842-6852
    • Malagnac, F.1    Bartee, L.2    Bender, J.3
  • 24
    • 58749097426 scopus 로고    scopus 로고
    • Small RNAs in transcriptional gene silencing and genome defence
    • Moazed D. 2009. Small RNAs in transcriptional gene silencing and genome defence. Nature 457: 413-420.
    • (2009) Nature , vol.457 , pp. 413-420
    • Moazed, D.1
  • 27
    • 60549114880 scopus 로고    scopus 로고
    • Widespread bidirectional promoters are the major source of cryptic transcripts in yeast
    • Neil H, Malabat C, d'Aubenton-Carafa Y, Xu Z, Steinmetz LM, Jacquier A. 2009. Widespread bidirectional promoters are the major source of cryptic transcripts in yeast. Nature 457: 1038-1042.
    • (2009) Nature , vol.457 , pp. 1038-1042
    • Neil, H.1    Malabat, C.2    D'Aubenton-Carafa, Y.3    Xu, Z.4    Steinmetz, L.M.5    Jacquier, A.6
  • 28
    • 14844302397 scopus 로고    scopus 로고
    • Plant nuclear RNA polymerase IV mediates siRNA and DNA methylation- Dependent heterochromatin formation
    • DOI 10.1016/j.cell.2005.02.007
    • Onodera Y, Haag JR, Ream T, Nunes PC, Pontes O, Pikaard CS. 2005. Plant nuclear RNA polymerase IV mediates siRNA and DNA methylation-dependent heterochromatin formation. Cell 120: 613-622. (Pubitemid 40343074)
    • (2005) Cell , vol.120 , Issue.5 , pp. 613-622
    • Onodera, Y.1    Haag, J.R.2    Ream, T.3    Nunes, P.C.4    Pontes, O.5    Pikaard, C.S.6
  • 30
    • 0037015239 scopus 로고    scopus 로고
    • CARPEL FACTORY, a Dicer homolog, and HEN1, a novel protein, act in microRNA metabolism in Arabidopsis thaliana
    • DOI 10.1016/S0960-9822(02)01017-5, PII S0960982202010175
    • Park W, Li J, Song R, Messing J, Chen X. 2002. CARPEL FACTORY, a Dicer homolog, and HEN1, a novel protein, act in microRNA metabolism in Arabidopsis thaliana. Curr Biol 12: 1484-1495. (Pubitemid 35036646)
    • (2002) Current Biology , vol.12 , Issue.17 , pp. 1484-1495
    • Park, W.1    Li, J.2    Song, R.3    Messing, J.4    Chen, X.5
  • 31
    • 33745690105 scopus 로고    scopus 로고
    • The Arabidopsis Chromatin-Modifying Nuclear siRNA Pathway Involves a Nucleolar RNA Processing Center
    • DOI 10.1016/j.cell.2006.05.031, PII S0092867406007537
    • Pontes O, Li CF, Nunes PC, Haag J, Ream T, Vitins A, Jacobsen SE, Pikaard CS. 2006. The Arabidopsis chromatin-modifying nuclear siRNA pathway involves a nucleolar RNA processing center. Cell 126: 79-92. (Pubitemid 44026550)
    • (2006) Cell , vol.126 , Issue.1 , pp. 79-92
    • Pontes, O.1    Li, C.F.2    Nunes, P.C.3    Haag, J.4    Ream, T.5    Vitins, A.6    Jacobsen, S.E.7    Pikaard, C.S.8
  • 32
    • 24344433177 scopus 로고    scopus 로고
    • Reinforcement of silencing at transposons and highly repeated sequences requires the concerted action of two distinct RNA polymerases IV in Arabidopsis
    • DOI 10.1101/gad.348405
    • Pontier D, Yahubyan G, Vega D, Bulski A, Saez-Vasquez J, Hakimi MA, Lerbs-Mache S, Colot V, Lagrange T. 2005. Reinforcement of silencing at transposons and highly repeated sequences requires the concerted action of two distinct RNA polymerases IV in Arabidopsis. Genes & Dev 19: 2030-2040. (Pubitemid 41247960)
    • (2005) Genes and Development , vol.19 , Issue.17 , pp. 2030-2040
    • Pontier, D.1    Yahubyan, G.2    Vega, D.3    Bulski, A.4    Saez-Vasquez, J.5    Hakimi, M.-A.6    Lerbs-Mache, S.7    Colot, V.8    Lagrange, T.9
  • 35
    • 0037072661 scopus 로고    scopus 로고
    • Regulation of heterochromatic silencing and histone H3 lysine-9 methylation by RNAi
    • DOI 10.1126/science.1074973
    • Volpe TA, Kidner C, Hall IM, Teng G, Grewal SI, Martienssen RA. 2002. Regulation of heterochromatic silencing and histone H3 lysine-9 methylation by RNAi. Science 297: 1833-1837. (Pubitemid 35024336)
    • (2002) Science , vol.297 , Issue.5588 , pp. 1833-1837
    • Volpe, T.A.1    Kidner, C.2    Hall, I.M.3    Teng, G.4    Grewal, S.I.S.5    Martienssen, R.A.6
  • 36
    • 55449131096 scopus 로고    scopus 로고
    • Noncoding transcription by RNA polymerase Pol IVb/Pol V mediates transcriptional silencing of overlapping and adjacent genes
    • Wierzbicki AT, Haag JR, Pikaard CS. 2008. Noncoding transcription by RNA polymerase Pol IVb/Pol V mediates transcriptional silencing of overlapping and adjacent genes. Cell 135: 635-648.
    • (2008) Cell , vol.135 , pp. 635-648
    • Wierzbicki, A.T.1    Haag, J.R.2    Pikaard, C.S.3
  • 37
    • 67349112845 scopus 로고    scopus 로고
    • RNA polymerase V transcription guides ARGONAUTE4 to chromatin
    • Wierzbicki AT, Ream TS, Haag JR, Pikaard CS. 2009. RNA polymerase V transcription guides ARGONAUTE4 to chromatin. Nat Genet 41: 630-634.
    • (2009) Nat Genet , vol.41 , pp. 630-634
    • Wierzbicki, A.T.1    Ream, T.S.2    Haag, J.R.3    Pikaard, C.S.4
  • 40
    • 42949086521 scopus 로고    scopus 로고
    • Approaches for studying microRNA and small interfering RNA methylation in vitro and in vivo
    • Yang Z, Vilkaitis G, Yu B, Klimasauskas S, Chen X. 2007. Approaches for studying microRNA and small interfering RNA methylation in vitro and in vivo. Methods Enzymol 427: 139-154.
    • (2007) Methods Enzymol , vol.427 , pp. 139-154
    • Yang, Z.1    Vilkaitis, G.2    Yu, B.3    Klimasauskas, S.4    Chen, X.5
  • 42
    • 55349109963 scopus 로고    scopus 로고
    • Polycomb proteins targeted by a short repeat RNA to the mouse X chromosome
    • Zhao J, Sun BK, Erwin JA, Song JJ, Lee JT. 2008. Polycomb proteins targeted by a short repeat RNA to the mouse X chromosome. Science 322: 750-756.
    • (2008) Science , vol.322 , pp. 750-756
    • Zhao, J.1    Sun, B.K.2    Erwin, J.A.3    Song, J.J.4    Lee, J.T.5
  • 43
    • 33947586544 scopus 로고    scopus 로고
    • Role of Arabidopsis AGO6 in siRNA accumulation, DNA methylation and transcriptional gene silencing
    • DOI 10.1038/sj.emboj.7601603, PII 7601603
    • Zheng X, Zhu J, Kapoor A, Zhu JK. 2007. Role of Arabidopsis AGO6 in siRNA accumulation, DNA methylation and transcriptional gene silencing. EMBO J 26: 1691-1701. (Pubitemid 46480931)
    • (2007) EMBO Journal , vol.26 , Issue.6 , pp. 1691-1701
    • Zheng, X.1    Zhu, J.2    Kapoor, A.3    Zhu, J.-K.4
  • 44
    • 0037474126 scopus 로고    scopus 로고
    • ARGONAUTE4 control of locus-specific siRNA accumulation and DNA and histone methylation
    • DOI 10.1126/science.1079695
    • Zilberman D, Cao X, Jacobsen SE. 2003. ARGONAUTE4 control of locus-specific siRNA accumulation and DNA and histone methylation. Science 299: 716-719. (Pubitemid 36159488)
    • (2003) Science , vol.299 , Issue.5607 , pp. 716-719
    • Zilberman, D.1    Cao, X.2    Jacobsen, S.E.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.