-
1
-
-
0035319006
-
Computational studies of gene regulatory networks: In numero molecular biology
-
Hasty, J., McMillen, D., Isaacs, F. & Collins, J.J. Computational studies of gene regulatory networks: in numero molecular biology. Nat. Rev. Genet. 2, 268-279 (2001).
-
(2001)
Nat. Rev. Genet.
, vol.2
, pp. 268-279
-
-
Hasty, J.1
McMillen, D.2
Isaacs, F.3
Collins, J.J.4
-
2
-
-
0037079012
-
Engineered gene circuits
-
Hasty, J., McMillen, D. & Collins, J.J. Engineered gene circuits. Nature 420, 224-230 (2002).
-
(2002)
Nature
, vol.420
, pp. 224-230
-
-
Hasty, J.1
McMillen, D.2
Collins, J.J.3
-
3
-
-
0346728474
-
Design of gene circuits: Lessons from bacteria
-
Wall, M.E., Hlavacek, W.S. & Savageau, M.A. Design of gene circuits: lessons from bacteria. Nat. Rev. Genet. 5, 34-42 (2004).
-
(2004)
Nat. Rev. Genet.
, vol.5
, pp. 34-42
-
-
Wall, M.E.1
Hlavacek, W.S.2
Savageau, M.A.3
-
5
-
-
23444461901
-
Advances in synthetic biology: On the path from prototypes to applications
-
McDaniel, R. & Weiss, R. Advances in synthetic biology: on the path from prototypes to applications. Curr. Opin. Biotechnol. 16, 476-483 (2005).
-
(2005)
Curr. Opin. Biotechnol.
, vol.16
, pp. 476-483
-
-
McDaniel, R.1
Weiss, R.2
-
6
-
-
28544440364
-
Reconstruction of genetic circuits
-
Sprinzak, D. & Elowitz, M.B. Reconstruction of genetic circuits. Nature 438, 443-448 (2005).
-
(2005)
Nature
, vol.438
, pp. 443-448
-
-
Sprinzak, D.1
Elowitz, M.B.2
-
7
-
-
0642367619
-
Group I aptazymes as genetic regulatory switches
-
Thompson, K.M., Syrett, H.A., Knudsen, S.M. & Ellington, A.D. Group I aptazymes as genetic regulatory switches. BMC Biotechnol. 2, 21 (2002).
-
(2002)
BMC Biotechnol.
, vol.2
, pp. 21
-
-
Thompson, K.M.1
Syrett, H.A.2
Knudsen, S.M.3
Ellington, A.D.4
-
8
-
-
0032500736
-
Controlling gene expression in living cells through small molecule-RNA interactions
-
Werstuck, G. & Green, M.R. Controlling gene expression in living cells through small molecule-RNA interactions. Science 282, 296-298 (1998).
-
(1998)
Science
, vol.282
, pp. 296-298
-
-
Werstuck, G.1
Green, M.R.2
-
9
-
-
0034845858
-
Inducible regulation of the S. cerevisiae cell cycle mediated by an RNA aptamer-ligand complex
-
Grate, D. & Wilson, C. Inducible regulation of the S. cerevisiae cell cycle mediated by an RNA aptamer-ligand complex. Bioorg. Med. Chem. 9, 2565-2570 (2001).
-
(2001)
Bioorg. Med. Chem.
, vol.9
, pp. 2565-2570
-
-
Grate, D.1
Wilson, C.2
-
10
-
-
0037337009
-
RNA sequences that work as transcriptional activating regions
-
Saha, S., Ansari, A.Z., Jarrell, K.A. & Ptashne, M. RNA sequences that work as transcriptional activating regions. Nucleic Acids Res. 31, 1565-1570 (2003).
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 1565-1570
-
-
Saha, S.1
Ansari, A.Z.2
Jarrell, K.A.3
Ptashne, M.4
-
11
-
-
0037863216
-
In vivo evolution of an RNA-based transcriptional activator
-
Buskirk, A.R., Kehayova, P.D., Landrigan, A. & Liu, D.R. In vivo evolution of an RNA-based transcriptional activator. Chem. Biol. 10, 533-540 (2003).
-
(2003)
Chem. Biol.
, vol.10
, pp. 533-540
-
-
Buskirk, A.R.1
Kehayova, P.D.2
Landrigan, A.3
Liu, D.R.4
-
12
-
-
4344646564
-
Engineering a ligand-dependent RNA transcriptional activator
-
Buskirk, A.R., Landrigan, A. & Liu, D.R. Engineering a ligand-dependent RNA transcriptional activator. Chem. Biol. 11, 1157-1163 (2004).
-
(2004)
Chem. Biol.
, vol.11
, pp. 1157-1163
-
-
Buskirk, A.R.1
Landrigan, A.2
Liu, D.R.3
-
13
-
-
3042741121
-
Engineered riboregulators enable post-transcriptional control of gene expression
-
Isaacs, F.J. et al. Engineered riboregulators enable post-transcriptional control of gene expression. Nat. Biotechnol. 22, 841-847 (2004).
-
(2004)
Nat. Biotechnol.
, vol.22
, pp. 841-847
-
-
Isaacs, F.J.1
-
14
-
-
2542601538
-
A theophylline responsive riboswitch based on helix slipping controls gene expression in vivo
-
Suess, B., Fink, B., Berens, C., Stentz, R. & Hillen, W. A theophylline responsive riboswitch based on helix slipping controls gene expression in vivo. Nucleic Acids Res. 32, 1610-1614 (2004).
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 1610-1614
-
-
Suess, B.1
Fink, B.2
Berens, C.3
Stentz, R.4
Hillen, W.5
-
15
-
-
4644275337
-
Exogenous control of mammalian gene expression through modulation of RNA self-cleavage
-
Yen, L. et al. Exogenous control of mammalian gene expression through modulation of RNA self-cleavage. Nature 431, 471-476 (2004).
-
(2004)
Nature
, vol.431
, pp. 471-476
-
-
Yen, L.1
-
16
-
-
21444457242
-
Programmable ligand-controlled riboregulators of eukaryotic gene expression
-
Bayer, T.S. & Smolke, C.D. Programmable ligand-controlled riboregulators of eukaryotic gene expression. Nat. Biotechnol. 23, 337-343 (2005).
-
(2005)
Nat. Biotechnol.
, vol.23
, pp. 337-343
-
-
Bayer, T.S.1
Smolke, C.D.2
-
17
-
-
6044261460
-
Genetic screens and selections for small molecules based on a synthetic riboswitch that activates protein translation
-
Desai, S.K. & Gallivan, J.P. Genetic screens and selections for small molecules based on a synthetic riboswitch that activates protein translation. J. Am. Chem. Soc. 126, 13247-13254 (2004).
-
(2004)
J. Am. Chem. Soc.
, vol.126
, pp. 13247-13254
-
-
Desai, S.K.1
Gallivan, J.P.2
-
18
-
-
24044543111
-
A network of orthogonal ribosome-mRNA pairs
-
Rackham, O. & Chin, J.W. A network of orthogonal ribosome-mRNA pairs. Nat. Chem. Biol. 1, 159-166 (2005).
-
(2005)
Nat. Chem. Biol.
, vol.1
, pp. 159-166
-
-
Rackham, O.1
Chin, J.W.2
-
19
-
-
29344453148
-
Cellular logic with orthogonal ribosomes
-
Rackham, O. & Chin, J.W. Cellular logic with orthogonal ribosomes. J. Am. Chem. Soc. 127, 17584-17585 (2005).
-
(2005)
J. Am. Chem. Soc.
, vol.127
, pp. 17584-17585
-
-
Rackham, O.1
Chin, J.W.2
-
20
-
-
0016149101
-
Identical 3′-terminal octanucleotide sequence in 18S ribosomal ribonucleic acid from different eukaryotes. A proposed role for this sequence in the recognition of terminator codons
-
Shine, J. & Dalgarno, L. Identical 3′-terminal octanucleotide sequence in 18S ribosomal ribonucleic acid from different eukaryotes. A proposed role for this sequence in the recognition of terminator codons. Biochem. J. 141, 609-615 (1974).
-
(1974)
Biochem. J.
, vol.141
, pp. 609-615
-
-
Shine, J.1
Dalgarno, L.2
-
21
-
-
0035958587
-
The path of messenger RNA through the ribosome
-
Yusupova, G.Z., Yusupov, M.M., Cate, J.H. & Noller, H.F. The path of messenger RNA through the ribosome. Cell 106, 233-241 (2001).
-
(2001)
Cell
, vol.106
, pp. 233-241
-
-
Yusupova, G.Z.1
Yusupov, M.M.2
Cate, J.H.3
Noller, H.F.4
-
22
-
-
0026574167
-
Importance of mRNA folding and start codon accessibility in the expression of genes in a ribosomal protein operon of Escherichia coli
-
Wikstrom, P.M., Lind, L.K., Berg, D.E. & Bjork, G.R. Importance of mRNA folding and start codon accessibility in the expression of genes in a ribosomal protein operon of Escherichia coli. J. Mol. Biol. 224, 949-966 (1992).
-
(1992)
J. Mol. Biol.
, vol.224
, pp. 949-966
-
-
Wikstrom, P.M.1
Lind, L.K.2
Berg, D.E.3
Bjork, G.R.4
-
23
-
-
0034730125
-
A trans-acting RNA as a control switch in Escherichia coli: DsrA modulates function by forming alternative structures
-
Lease, R.A. & Belfort, M. A trans-acting RNA as a control switch in Escherichia coli: DsrA modulates function by forming alternative structures. Proc. Natl. Acad. Sci. USA 97, 9919-9924 (2000).
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 9919-9924
-
-
Lease, R.A.1
Belfort, M.2
-
24
-
-
18044384417
-
Bacterial small RNA regulators
-
Majdalani, N., Vanderpool, C.K. & Gottesman, S. Bacterial small RNA regulators. Crit. Rev. Biochem. Mol. Biol. 40, 93-113 (2005).
-
(2005)
Crit. Rev. Biochem. Mol. Biol.
, vol.40
, pp. 93-113
-
-
Majdalani, N.1
Vanderpool, C.K.2
Gottesman, S.3
-
25
-
-
4344682527
-
The small RNA regulators of Escherichia coli: Roles and mechanisms
-
Gottesman, S. The small RNA regulators of Escherichia coli: roles and mechanisms. Annu. Rev. Microbiol. 58, 303-328 (2004).
-
(2004)
Annu. Rev. Microbiol.
, vol.58
, pp. 303-328
-
-
Gottesman, S.1
-
26
-
-
0033579543
-
Antisense RNA regulation in prokaryotes: Rapid RNA/RNA interaction facilitated by a general U-turn loop structure
-
Franch, T., Petersen, M., Wagner, E.G., Jacobsen, J.P. & Gerdes, K. Antisense RNA regulation in prokaryotes: rapid RNA/RNA interaction facilitated by a general U-turn loop structure. J. Mol. Biol. 294, 1115-1125 (1999).
-
(1999)
J. Mol. Biol.
, vol.294
, pp. 1115-1125
-
-
Franch, T.1
Petersen, M.2
Wagner, E.G.3
Jacobsen, J.P.4
Gerdes, K.5
-
27
-
-
0036437019
-
Regulation and mode of action of the second small RNA activator of RpoS translation, RprA
-
Majdalani, N., Hernandez, D. & Gottesman, S. Regulation and mode of action of the second small RNA activator of RpoS translation, RprA. Mol. Microbiol. 46, 813-826 (2002).
-
(2002)
Mol. Microbiol.
, vol.46
, pp. 813-826
-
-
Majdalani, N.1
Hernandez, D.2
Gottesman, S.3
-
28
-
-
0036575444
-
Antisense RNAs everywhere?
-
Wagner, E.G. & Flardh, K. Antisense RNAs everywhere? Trends Genet. 18, 223-226 (2002).
-
(2002)
Trends Genet.
, vol.18
, pp. 223-226
-
-
Wagner, E.G.1
Flardh, K.2
-
29
-
-
0038275920
-
Translation repression by antisense sequences
-
Good, L. Translation repression by antisense sequences. Cell. Mol. Life Sci. 60, 854-861 (2003).
-
(2003)
Cell. Mol. Life Sci.
, vol.60
, pp. 854-861
-
-
Good, L.1
-
30
-
-
0035682509
-
Phage-display evolution of tyrosine kinases with altered nucleotide specificity
-
Ting, A.Y. et al. Phage-display evolution of tyrosine kinases with altered nucleotide specificity. Biopolymers 60, 220-228 (2001).
-
(2001)
Biopolymers
, vol.60
, pp. 220-228
-
-
Ting, A.Y.1
-
31
-
-
0035006293
-
Selective regulation of gene expression by an orthogonal estrogen receptor-ligand pair created by polar-group exchange
-
Shi, Y. & Koh, J.T. Selective regulation of gene expression by an orthogonal estrogen receptor-ligand pair created by polar-group exchange. Chem. Biol. 8, 501-510 (2001).
-
(2001)
Chem. Biol.
, vol.8
, pp. 501-510
-
-
Shi, Y.1
Koh, J.T.2
-
32
-
-
0035912725
-
Molecular mechanisms of translation initiation in eukaryotes
-
Pestova, T.V. et al. Molecular mechanisms of translation initiation in eukaryotes. Proc. Natl. Acad. Sci. USA 98, 7029-7036 (2001).
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 7029-7036
-
-
Pestova, T.V.1
-
33
-
-
2342633872
-
Cellular internal ribosome entry segments: Structures, trans-acting factors and regulation of gene expression
-
Stoneley, M. & Willis, A.E. Cellular internal ribosome entry segments: structures, trans-acting factors and regulation of gene expression. Oncogens 23, 3200-3207 (2004).
-
(2004)
Oncogens
, vol.23
, pp. 3200-3207
-
-
Stoneley, M.1
Willis, A.E.2
-
34
-
-
0022621213
-
Purification and some properties of uracil phosphoribosyltransferase from Escherichia coli K12
-
Rasmussen, U.B., Mygind, B. & Nygaard, P. Purification and some properties of uracil phosphoribosyltransferase from Escherichia coli K12. Biochim. Biophys. Acta 881, 268-275 (1986).
-
(1986)
Biochim. Biophys. Acta
, vol.881
, pp. 268-275
-
-
Rasmussen, U.B.1
Mygind, B.2
Nygaard, P.3
-
35
-
-
27144527479
-
Regulation of Bacterial Gene Expression by Riboswitches
-
Winkler, W.C. & Breaker, R.R. Regulation of Bacterial Gene Expression by Riboswitches. Annu. Rev. Microbiol. 59, 487-517 (2005).
-
(2005)
Annu. Rev. Microbiol.
, vol.59
, pp. 487-517
-
-
Winkler, W.C.1
Breaker, R.R.2
-
36
-
-
0034603154
-
Adaptive recognition by nucleic acid aptamers
-
Hermann, T. & Patel, D.J. Adaptive recognition by nucleic acid aptamers. Science 287, 820-825 (2000).
-
(2000)
Science
, vol.287
, pp. 820-825
-
-
Hermann, T.1
Patel, D.J.2
-
37
-
-
0037206833
-
Thiamine derivatives bind messenger RNAs directly to regulate bacterial gene expression
-
Winkler, W., Nahvi, A. & Breaker, R.R. Thiamine derivatives bind messenger RNAs directly to regulate bacterial gene expression. Nature 419, 952-956 (2002).
-
(2002)
Nature
, vol.419
, pp. 952-956
-
-
Winkler, W.1
Nahvi, A.2
Breaker, R.R.3
-
38
-
-
1642586299
-
Control of gene expression by a natural metabolite-responsive ribozyme
-
Winkler, W.C., Nahvi, A., Roth, A., Collins, J.A. & Breaker, R.R. Control of gene expression by a natural metabolite-responsive ribozyme. Nature 428, 281-286 (2004).
-
(2004)
Nature
, vol.428
, pp. 281-286
-
-
Winkler, W.C.1
Nahvi, A.2
Roth, A.3
Collins, J.A.4
Breaker, R.R.5
-
39
-
-
0034667927
-
Hammerhead-mediated processing of satellite pDo500 family transcripts from Dolichopoda cave crickets
-
Rojas, A.A. et al. Hammerhead-mediated processing of satellite pDo500 family transcripts from Dolichopoda cave crickets. Nucleic Acids Res. 28, 4037-4043 (2000).
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 4037-4043
-
-
Rojas, A.A.1
-
40
-
-
0031806709
-
Schistosome satellite DNA encodes active hammerhead ribozymes
-
Ferbeyre, G., Smith, J.M. & Cedergren, R. Schistosome satellite DNA encodes active hammerhead ribozymes. Mol. Cell. Biol. 18, 3880-3888 (1998).
-
(1998)
Mol. Cell. Biol.
, vol.18
, pp. 3880-3888
-
-
Ferbeyre, G.1
Smith, J.M.2
Cedergren, R.3
-
41
-
-
0034910904
-
Achieving efficient delivery of morpholino oligos in cultured cells
-
Morcos, P.A. Achieving efficient delivery of morpholino oligos in cultured cells. Genesis 30, 94-102 (2001).
-
(2001)
Genesis
, vol.30
, pp. 94-102
-
-
Morcos, P.A.1
-
42
-
-
0013966416
-
Identification of antibiotic 1037 astoyocamycin
-
Aszalos, A., Lemanski, P., Robison, R., Davis, S. & Berk, B. Identification of antibiotic 1037 astoyocamycin. J. Antibiot. (Tokyo) 19, 285 (1966).
-
(1966)
J. Antibiot. (Tokyo)
, vol.19
, pp. 285
-
-
Aszalos, A.1
Lemanski, P.2
Robison, R.3
Davis, S.4
Berk, B.5
-
43
-
-
0034688174
-
Construction of a genetic toggle switch in Escherichia coli
-
Gardner, T.S., Cantor, C.R. & Collins, J.J. Construction of a genetic toggle switch in Escherichia coli. Nature 403, 339-342 (2000).
-
(2000)
Nature
, vol.403
, pp. 339-342
-
-
Gardner, T.S.1
Cantor, C.R.2
Collins, J.J.3
-
44
-
-
17144456808
-
Positive feedback in eukaryotic gene networks: Cell differentiation by graded to binary response conversion
-
Becskei, A., Seraphin, B. & Serrano, L. Positive feedback in eukaryotic gene networks: cell differentiation by graded to binary response conversion. EMBO J. 20, 2528-2535 (2001).
-
(2001)
EMBO J.
, vol.20
, pp. 2528-2535
-
-
Becskei, A.1
Seraphin, B.2
Serrano, L.3
-
45
-
-
0038271880
-
Prediction and measurement of an autoregulatory genetic module
-
Isaacs, F.J., Hasty, J., Cantor, C.R. & Collins, J.J. Prediction and measurement of an autoregulatory genetic module. Proc. Natl. Acad. Sci. USA 100, 7714-7719 (2003).
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 7714-7719
-
-
Isaacs, F.J.1
Hasty, J.2
Cantor, C.R.3
Collins, J.J.4
-
46
-
-
2942614884
-
Programmable cells: Interfacing natural and engineered gene networks
-
Kobayashi, H. et al. Programmable cells: interfacing natural and engineered gene networks. Proc. Natl. Acad. Sci. USA 101, 8414-8419 (2004).
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 8414-8419
-
-
Kobayashi, H.1
-
47
-
-
3042822415
-
An engineered epigenetic transgene switch in mammalian cells
-
Kramer, B.P. et al. An engineered epigenetic transgene switch in mammalian cells. Nat. Biotechnol. 22, 867-870 (2004).
-
(2004)
Nat. Biotechnol.
, vol.22
, pp. 867-870
-
-
Kramer, B.P.1
-
48
-
-
0030960672
-
Transcriptional activation by recruitment
-
Ptashne, M. & Gann, A. Transcriptional activation by recruitment. Nature 386, 569-577 (1997).
-
(1997)
Nature
, vol.386
, pp. 569-577
-
-
Ptashne, M.1
Gann, A.2
-
49
-
-
0032900053
-
Identification of RNAs that bind to a specific protein using the yeast three-hybrid system
-
Sengupta, D.J., Wickens, M. & Fields, S. Identification of RNAs that bind to a specific protein using the yeast three-hybrid system. RNA 5, 596-601 (1999).
-
(1999)
RNA
, vol.5
, pp. 596-601
-
-
Sengupta, D.J.1
Wickens, M.2
Fields, S.3
-
50
-
-
0036354598
-
Analyzing mRNA-protein complexes using a yeast three-hybrid system
-
Bernstein, D.S., Buter, N., Stumpf, C. & Wickens, M. Analyzing mRNA-protein complexes using a yeast three-hybrid system. Methods 26, 123-141 (2002).
-
(2002)
Methods
, vol.26
, pp. 123-141
-
-
Bernstein, D.S.1
Buter, N.2
Stumpf, C.3
Wickens, M.4
-
51
-
-
0025982691
-
Specific interaction between RNA phage coat proteins and RNA
-
Witherell, G.W., Gott, J.M. & Uhlenbeck, O.C. Specific interaction between RNA phage coat proteins and RNA. Prog. Nucleic Acid Res. Mol. Biol. 40, 185-220 (1991).
-
(1991)
Prog. Nucleic Acid Res. Mol. Biol.
, vol.40
, pp. 185-220
-
-
Witherell, G.W.1
Gott, J.M.2
Uhlenbeck, O.C.3
-
52
-
-
0029053759
-
Probing sequence-specific RNA recognition by the bacteriophage MS2 coat protein
-
Stockley, P.G. et al. Probing sequence-specific RNA recognition by the bacteriophage MS2 coat protein. Nucleic Acids Res. 23, 2512-2518 (1995).
-
(1995)
Nucleic Acids Res.
, vol.23
, pp. 2512-2518
-
-
Stockley, P.G.1
-
53
-
-
0033033283
-
Laser-mediated, site-specific inactivation of RNA transcripts
-
Grate, D. & Wilson, C. Laser-mediated, site-specific inactivation of RNA transcripts. Proc. Natl. Acad. Sci. USA96, 6131-6136 (1999).
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 6131-6136
-
-
Grate, D.1
Wilson, C.2
-
54
-
-
17644417762
-
Doubly catalytic sensing of HIV-1-related CCR5 sequence in prokaryotic cell-free translation system using riboregulator-controlled luciferase activity
-
Sando, S., Narita, A., Abe, K. & Aoyama, Y. Doubly catalytic sensing of HIV-1-related CCR5 sequence in prokaryotic cell-free translation system using riboregulator-controlled luciferase activity. J. Am. Chem. Soc. 127, 5300-5301 (2005).
-
(2005)
J. Am. Chem. Soc.
, vol.127
, pp. 5300-5301
-
-
Sando, S.1
Narita, A.2
Abe, K.3
Aoyama, Y.4
-
55
-
-
27944493648
-
Computational design and experimental validation of oligonucleotide- sensing allosteric ribozymes
-
Penchovsky, R. & Breaker, R.R. Computational design and experimental validation of oligonucleotide-sensing allosteric ribozymes. Nat. Biotechnol. 23, 1424-1433 (2005).
-
(2005)
Nat. Biotechnol.
, vol.23
, pp. 1424-1433
-
-
Penchovsky, R.1
Breaker, R.R.2
-
56
-
-
0037168510
-
Directed evolution of a genetic circuit
-
Yokobayashi, Y., Weiss, R. & Arnold, F.H. Directed evolution of a genetic circuit. Proc. Natl. Acad. Sci. USA 99, 16587-16591 (2002).
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 16587-16591
-
-
Yokobayashi, Y.1
Weiss, R.2
Arnold, F.H.3
-
57
-
-
11144247743
-
Accurate multiplex gene synthesis from programmable DNA microchips
-
Tian, J. et al. Accurate multiplex gene synthesis from programmable DNA microchips. Nature 432, 1050-1054 (2004).
-
(2004)
Nature
, vol.432
, pp. 1050-1054
-
-
Tian, J.1
-
58
-
-
23444441147
-
Gene targeting using zinc finger nucleases
-
Porteus, M.H. & Carroll, D. Gene targeting using zinc finger nucleases. Nat. Biotechnol. 23, 967-973 (2005).
-
(2005)
Nat. Biotechnol.
, vol.23
, pp. 967-973
-
-
Porteus, M.H.1
Carroll, D.2
-
59
-
-
0347364647
-
Generating a synthetic genome by whole genome assembly: PhiX174 bacteriophage from synthetic oligonucleotides
-
Smith, H.O., Hutchison, C.A., III, Pfannkoch, C. & Venter, J.C. Generating a synthetic genome by whole genome assembly: phiX174 bacteriophage from synthetic oligonucleotides. Proc. Natl. Acad. Sci. USA 100, 15440-15445 (2003).
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 15440-15445
-
-
Smith, H.O.1
Hutchison III, C.A.2
Pfannkoch, C.3
Venter, J.C.4
-
60
-
-
28544433105
-
Refactoring bacteriophage T7
-
Published online 13 September doi:10.1038/msb4100025
-
Chan, L.Y., Kosuri, S. & Endy, D. Refactoring bacteriophage T7. Mol. Syst. Biol., Published online 13 September 2005 (doi:10.1038/msb4100025).
-
(2005)
Mol. Syst. Biol.
-
-
Chan, L.Y.1
Kosuri, S.2
Endy, D.3
-
61
-
-
0038752617
-
Computational design of receptor and sensor proteins with novel functions
-
Looger, L.L., Dwyer, M.A., Smith, J.J. & Hellinga, H.W. Computational design of receptor and sensor proteins with novel functions. Nature 423, 185-190 (2003).
-
(2003)
Nature
, vol.423
, pp. 185-190
-
-
Looger, L.L.1
Dwyer, M.A.2
Smith, J.J.3
Hellinga, H.W.4
-
62
-
-
0141757323
-
Reprogramming control of an allosteric signaling switch through modular recombination
-
Dueber, J.E., Yeh, B.J., Chak, K. & Lim, W.A. Reprogramming control of an allosteric signaling switch through modular recombination. Science 301, 1904-1908 (2003).
-
(2003)
Science
, vol.301
, pp. 1904-1908
-
-
Dueber, J.E.1
Yeh, B.J.2
Chak, K.3
Lim, W.A.4
-
63
-
-
0038391517
-
Engineering a mevalonate pathway in Escherichia coli for production of terpenoids
-
Martin, V.J., Pitera, D.J., Withers, S.T., Newman, J.D. & Keasling, J.D. Engineering a mevalonate pathway in Escherichia coli for production of terpenoids. Nat. Biotechnol. 21, 796-802 (2003).
-
(2003)
Nat. Biotechnol.
, vol.21
, pp. 796-802
-
-
Martin, V.J.1
Pitera, D.J.2
Withers, S.T.3
Newman, J.D.4
Keasling, J.D.5
-
64
-
-
19444367096
-
Microbial fuel cells: Novel biotechnology for energy generation
-
Rabaey, K. & Verstraete, W. Microbial fuel cells: novel biotechnology for energy generation. Trends Biotechnol. 23, 291-298 (2005).
-
(2005)
Trends Biotechnol.
, vol.23
, pp. 291-298
-
-
Rabaey, K.1
Verstraete, W.2
-
65
-
-
28544451327
-
Foundations for engineering biology
-
Endy, D. Foundations for engineering biology. Nature 438, 449-453 (2005).
-
(2005)
Nature
, vol.438
, pp. 449-453
-
-
Endy, D.1
-
66
-
-
0035656688
-
Non-coding RNA genes and the modern RNA world
-
Eddy, S.R. Non-coding RNA genes and the modern RNA world. Nat. Rev. Genet. 2, 919-929 (2001).
-
(2001)
Nat. Rev. Genet.
, vol.2
, pp. 919-929
-
-
Eddy, S.R.1
-
67
-
-
0020417286
-
Self-splicing RNA: Autoexcision and autocyclization of the ribosomal RNA intervening sequence of Tetrahymena
-
Kruger, K. et al. Self-splicing RNA: autoexcision and autocyclization of the ribosomal RNA intervening sequence of Tetrahymena. Cell 31, 147-157 (1982).
-
(1982)
Cell
, vol.31
, pp. 147-157
-
-
Kruger, K.1
-
68
-
-
0021013526
-
The RNA moiety of ribonuclease P is the catalytic subunit of the enzyme
-
Guerrier-Takada, C., Gardiner, K., Marsh, T., Pace, N. & Altman, S. The RNA moiety of ribonuclease P is the catalytic subunit of the enzyme. Cell 35, 849-857 (1983).
-
(1983)
Cell
, vol.35
, pp. 849-857
-
-
Guerrier-Takada, C.1
Gardiner, K.2
Marsh, T.3
Pace, N.4
Altman, S.5
-
69
-
-
0037062949
-
The chemical repertoire of natural ribozymes
-
Doudna, J.A. & Cech, T.R. The chemical repertoire of natural ribozymes. Nature 418, 222-228 (2002).
-
(2002)
Nature
, vol.418
, pp. 222-228
-
-
Doudna, J.A.1
Cech, T.R.2
-
70
-
-
85041131924
-
Antisense RNA control in bacteria, phages, and plasmids
-
Wagner, E.G. & Simons, R.W. Antisense RNA control in bacteria, phages, and plasmids. Annu. Rev. Microbiol. 48, 713-742 (1994).
-
(1994)
Annu. Rev. Microbiol.
, vol.48
, pp. 713-742
-
-
Wagner, E.G.1
Simons, R.W.2
-
71
-
-
0141860088
-
Coupled degradation of a small regulatory RNA and its mRNA targets in Escherichia coli
-
Masse, E., Escorcia, F.E. & Gottesman, S. Coupled degradation of a small regulatory RNA and its mRNA targets in Escherichia coli. Genes Dev. 17, 2374-2383 (2003).
-
(2003)
Genes Dev.
, vol.17
, pp. 2374-2383
-
-
Masse, E.1
Escorcia, F.E.2
Gottesman, S.3
-
72
-
-
0034637161
-
The structural basis of ribosome activity in peptide bond synthesis
-
Nissen, P., Hansen, J., Ban, N., Moore, P.B. & Steitz, T.A. The structural basis of ribosome activity in peptide bond synthesis. Science 289, 920-930 (2000).
-
(2000)
Science
, vol.289
, pp. 920-930
-
-
Nissen, P.1
Hansen, J.2
Ban, N.3
Moore, P.B.4
Steitz, T.A.5
-
73
-
-
0042658199
-
RNA, the first macromolecular catalyst: The ribosome is a ribozyme
-
Steitz, T.A. & Moore, P.B. RNA, the first macromolecular catalyst: the ribosome is a ribozyme. Trends Biochem. Sci. 28, 411-418 (2003).
-
(2003)
Trends Biochem. Sci.
, vol.28
, pp. 411-418
-
-
Steitz, T.A.1
Moore, P.B.2
-
74
-
-
7544220590
-
Substrate-assisted catalysis of peptide bond formation by the ribosome
-
Weinger, J.S., Parnell, K.M., Dorner, S., Green, R. & Strobel, S.A. Substrate-assisted catalysis of peptide bond formation by the ribosome. Nat. Struct. Mol. Biol. 11, 1101-1106 (2004).
-
(2004)
Nat. Struct. Mol. Biol.
, vol.11
, pp. 1101-1106
-
-
Weinger, J.S.1
Parnell, K.M.2
Dorner, S.3
Green, R.4
Strobel, S.A.5
-
75
-
-
7544231457
-
Observation of internal cleavage and ligation reactions of a ribozyme
-
Nahas, M.K. et al. Observation of internal cleavage and ligation reactions of a ribozyme. Nat. Struct. Mol. Biol. 11, 1107-1113 (2004).
-
(2004)
Nat. Struct. Mol. Biol.
, vol.11
, pp. 1107-1113
-
-
Nahas, M.K.1
-
76
-
-
0031194873
-
A unique mechanism for RNA catalysis: The role of metal cofactors in hairpin ribozyme cleavage
-
Hampel, A. & Cowan, J.A. A unique mechanism for RNA catalysis: the role of metal cofactors in hairpin ribozyme cleavage. Chem. Biol. 4, 513-517 (1997).
-
(1997)
Chem. Biol.
, vol.4
, pp. 513-517
-
-
Hampel, A.1
Cowan, J.A.2
-
77
-
-
0030968710
-
Mechanistic aspects of enzymatic catalysis: Lessons from comparison of RNA and protein enzymes
-
Narlikar, G.J. & Herschlag, D. Mechanistic aspects of enzymatic catalysis: lessons from comparison of RNA and protein enzymes. Annu. Rev. Biochem. 66, 19-59 (1997).
-
(1997)
Annu. Rev. Biochem.
, vol.66
, pp. 19-59
-
-
Narlikar, G.J.1
Herschlag, D.2
-
78
-
-
0037058920
-
An mRNA structure that controls gene expression by binding FMN
-
Winkler, W.C., Cohen-Chalamish, S. & Breaker, R.R. An mRNA structure that controls gene expression by binding FMN. Proc. Natl. Acad. Sci. USA 99, 15908-15913 (2002).
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 15908-15913
-
-
Winkler, W.C.1
Cohen-Chalamish, S.2
Breaker, R.R.3
-
79
-
-
0032545933
-
Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans
-
Fire, A. et al. Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans. Nature 391, 806-811 (1998).
-
(1998)
Nature
, vol.391
, pp. 806-811
-
-
Fire, A.1
-
80
-
-
3142615372
-
The RNAi revolution
-
Novina, C.D. & Sharp, P.A. The RNAi revolution. Nature 430, 161-164 (2004).
-
(2004)
Nature
, vol.430
, pp. 161-164
-
-
Novina, C.D.1
Sharp, P.A.2
-
81
-
-
24644446398
-
Ribo-gnome: The big world of small RNAs
-
Zamore, P.D. & Haley, B. Ribo-gnome: the big world of small RNAs. Science 309, 1519-1524 (2005).
-
(2005)
Science
, vol.309
, pp. 1519-1524
-
-
Zamore, P.D.1
Haley, B.2
-
82
-
-
0035955361
-
An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans
-
Lau, N.C., Lim, L.P., Weinstein, E.G. & Bartel, D.P. An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans. Science 294, 858-862 (2001).
-
(2001)
Science
, vol.294
, pp. 858-862
-
-
Lau, N.C.1
Lim, L.P.2
Weinstein, E.G.3
Bartel, D.P.4
-
83
-
-
0035955366
-
An extensive class of small RNAs in Caenorhabditis elegans
-
Lee, R.C. & Ambros, V. An extensive class of small RNAs in Caenorhabditis elegans. Science 294, 862-864 (2001).
-
(2001)
Science
, vol.294
, pp. 862-864
-
-
Lee, R.C.1
Ambros, V.2
-
84
-
-
0035955374
-
Identification of novel genes coding for small expressed RNAs
-
Lagos-Quintana, M., Rauhut, R., Lendeckel, W. & Tuschl, T. Identification of novel genes coding for small expressed RNAs. Science 294, 853-858 (2001).
-
(2001)
Science
, vol.294
, pp. 853-858
-
-
Lagos-Quintana, M.1
Rauhut, R.2
Lendeckel, W.3
Tuschl, T.4
-
85
-
-
0037162702
-
Prediction of plant microRNA targets
-
Rhoades, M.W. et al. Prediction of plant microRNA targets. Cell 110, 513-520 (2002).
-
(2002)
Cell
, vol.110
, pp. 513-520
-
-
Rhoades, M.W.1
-
86
-
-
2142654329
-
MicroRNA-directed cleavage of HOXB8 mRNA
-
Yekta, S., Shih, I.H. & Bartel, D.P. MicroRNA-directed cleavage of HOXB8 mRNA. Science 304, 594-596 (2004).
-
(2004)
Science
, vol.304
, pp. 594-596
-
-
Yekta, S.1
Shih, I.H.2
Bartel, D.P.3
-
87
-
-
0025074907
-
In vitro selection of RNA molecules that bind specific ligands
-
Ellington, A.D. & Szostak, J.W. In vitro selection of RNA molecules that bind specific ligands. Nature 346, 818-822 (1990).
-
(1990)
Nature
, vol.346
, pp. 818-822
-
-
Ellington, A.D.1
Szostak, J.W.2
-
88
-
-
0025194307
-
Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase
-
Tuerk, C. & Gold, L. Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase. Science 249, 505-510 (1990).
-
(1990)
Science
, vol.249
, pp. 505-510
-
-
Tuerk, C.1
Gold, L.2
-
89
-
-
0026599465
-
Selection in vitro of single-stranded DNA molecules that fold into specific ligand-binding structures
-
Ellington, A.D. & Szostak, J.W. Selection in vitro of single-stranded DNA molecules that fold into specific ligand-binding structures. Nature 355, 850-852 (1992).
-
(1992)
Nature
, vol.355
, pp. 850-852
-
-
Ellington, A.D.1
Szostak, J.W.2
-
90
-
-
0000917638
-
In Vitro Selection of Catalytic Polynucleotides
-
Breaker, R.R. In Vitro Selection of Catalytic Polynucleotides. Chem. Rev. 97, 371-390 (1997).
-
(1997)
Chem. Rev.
, vol.97
, pp. 371-390
-
-
Breaker, R.R.1
-
91
-
-
0031171217
-
Rational design of allosteric ribozymes
-
Tang, J. & Breaker, R.R. Rational design of allosteric ribozymes. Chem. Biol. 4, 453-459 (1997).
-
(1997)
Chem. Biol.
, vol.4
, pp. 453-459
-
-
Tang, J.1
Breaker, R.R.2
-
92
-
-
0032541654
-
RNA-catalysed nucleotide synthesis
-
Unrau, P.J. & Bartel, D.P. RNA-catalysed nucleotide synthesis. Nature 395, 260-263 (1998).
-
(1998)
Nature
, vol.395
, pp. 260-263
-
-
Unrau, P.J.1
Bartel, D.P.2
-
93
-
-
0032527792
-
Allosteric regulation of a ribozyme activity through ligand-induced conformational change
-
Araki, M., Okuno, Y., Hara, Y. & Sugiura, Y. Allosteric regulation of a ribozyme activity through ligand-induced conformational change. Nucleic Acids Res. 26, 3379-3384 (1998).
-
(1998)
Nucleic Acids Res.
, vol.26
, pp. 3379-3384
-
-
Araki, M.1
Okuno, Y.2
Hara, Y.3
Sugiura, Y.4
-
94
-
-
0032955410
-
In vitro selection of an allosteric ribozyme that transduces analytes to amplicons
-
Robertson, M.P. & Ellington, A.D. In vitro selection of an allosteric ribozyme that transduces analytes to amplicons. Nat. Biotechnol. 17, 62-66 (1999).
-
(1999)
Nat. Biotechnol.
, vol.17
, pp. 62-66
-
-
Robertson, M.P.1
Ellington, A.D.2
-
95
-
-
0033616774
-
Engineering precision RNA molecular switches
-
Soukup, G.A. & Breaker, R.R. Engineering precision RNA molecular switches. Proc. Natl. Acad. Sci. USA 96, 3584-3589 (1999).
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 3584-3589
-
-
Soukup, G.A.1
Breaker, R.R.2
-
96
-
-
0034705119
-
Structural diversity of self-cleaving ribozymes
-
Tang, J. & Breaker, R.R. Structural diversity of self-cleaving ribozymes. Proc. Natl. Acad. Sci. USA 97, 5784-5789 (2000).
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 5784-5789
-
-
Tang, J.1
Breaker, R.R.2
-
97
-
-
0035312243
-
Cooperative binding of effectors by an allosteric ribozyme
-
Jose, A.M., Soukup, G.A. & Breaker, R.R. Cooperative binding of effectors by an allosteric ribozyme. Nucleic Acids Res. 29, 1631-1637 (2001).
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 1631-1637
-
-
Jose, A.M.1
Soukup, G.A.2
Breaker, R.R.3
-
98
-
-
0028675028
-
DNA enzyme that cleaves RNA
-
Breaker, R.R. & Joyce, G.F.A. DNA enzyme that cleaves RNA. Chem. Biol. 1, 223-229 (1994).
-
(1994)
Chem. Biol.
, vol.1
, pp. 223-229
-
-
Breaker, R.R.1
Joyce, G.F.A.2
-
100
-
-
28544448500
-
In vitro se lection, characterization, and application of deoxyribozymes that cleave RNA
-
Silverman, S.K. In vitro se lection, characterization, and application of deoxyribozymes that cleave RNA. Nucleic Acids Res. 33, 6151-6163 (2005).
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 6151-6163
-
-
Silverman, S.K.1
-
101
-
-
0034305052
-
The past, present and future of molecular computing
-
Ruben, A.J. & Landweber, L.F. The past, present and future of molecular computing. Nat. Rev. Mol. Cell Biol. 1, 69-72 (2000).
-
(2000)
Nat. Rev. Mol. Cell Biol.
, vol.1
, pp. 69-72
-
-
Ruben, A.J.1
Landweber, L.F.2
-
102
-
-
85015106657
-
DNA in a material world
-
Seeman, N.C. DNA in a material world. Nature 421, 427-431 (2003).
-
(2003)
Nature
, vol.421
, pp. 427-431
-
-
Seeman, N.C.1
-
103
-
-
0030810710
-
Examination of the catalytic fitness of the hammerhead ribozyme by in vitro selection
-
Tang, J. & Breaker, R.R. Examination of the catalytic fitness of the hammerhead ribozyme by in vitro selection. RNA 3, 914-925 (1997).
-
(1997)
RNA
, vol.3
, pp. 914-925
-
-
Tang, J.1
Breaker, R.R.2
-
104
-
-
0032530868
-
Mechanism for allosteric inhibition of an ATP-sensitive ribozyme
-
Tang, J. & Breaker, R.R. Mechanism for allosteric inhibition of an ATP-sensitive ribozyme. Nucleic Acids Res. 26, 4214-4221 (1998).
-
(1998)
Nucleic Acids Res.
, vol.26
, pp. 4214-4221
-
-
Tang, J.1
Breaker, R.R.2
-
105
-
-
0042360338
-
A deoxyribozyme-based molecular automaton
-
Stojanovic, M.N. & Stefanovic, D. A deoxyribozyme-based molecular automaton. Nat. Biotechnol. 21, 1069-1074 (2003).
-
(2003)
Nat. Biotechnol.
, vol.21
, pp. 1069-1074
-
-
Stojanovic, M.N.1
Stefanovic, D.2
-
106
-
-
0035936116
-
Programmable and autonomous computing machine made of biomolecules
-
Benenson, Y. et al. Programmable and autonomous computing machine made of biomolecules. Nature 414, 430-434 (2001).
-
(2001)
Nature
, vol.414
, pp. 430-434
-
-
Benenson, Y.1
-
107
-
-
2642555548
-
An autonomous molecular computer for logical control of gene expression
-
Benenson, Y., Gil, B., Ben-Dor, U., Adar, R. & Shapiro, E. An autonomous molecular computer for logical control of gene expression. Nature 429, 423-429 (2004).
-
(2004)
Nature
, vol.429
, pp. 423-429
-
-
Benenson, Y.1
Gil, B.2
Ben-Dor, U.3
Adar, R.4
Shapiro, E.5
-
108
-
-
0033536026
-
A small nucleolar RNA:ribozyme hybrid cleaves a nucleolar RNA target in vivo with near-perfect efficiency
-
Samarsky, D.A. et al. A small nucleolar RNA:ribozyme hybrid cleaves a nucleolar RNA target in vivo with near-perfect efficiency. Proc. Natl. Acad. Sci. USA 96, 6609-6614 (1999).
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 6609-6614
-
-
Samarsky, D.A.1
|