-
1
-
-
0024786853
-
Alternative mRNA structures of the cIII gene of bacteriophage λ determine the rate of its translation initiation
-
Altuvia S, Kornitzer D, Teff D, Oppenheim AB. 1989. Alternative mRNA structures of the cIII gene of bacteriophage λ determine the rate of its translation initiation. J. Mol. Biol. 210:265-80
-
(1989)
J. Mol. Biol.
, vol.210
, pp. 265-280
-
-
Altuvia, S.1
Kornitzer, D.2
Teff, D.3
Oppenheim, A.B.4
-
2
-
-
0034725539
-
fblA repression by OxyS RNA: Kissing complex formation at two sites results in a stable antisense-target RNA complex
-
Argaman I, Altuvia S. 2000. fblA repression by OxyS RNA: Kissing complex formation at two sites results in a stable antisense-target RNA complex. J. Mol. Biol. 300:1101-12
-
(2000)
J. Mol. Biol.
, vol.300
, pp. 1101-1112
-
-
Argaman, I.1
Altuvia, S.2
-
3
-
-
1842610529
-
Regulation of transcription attenuation and translation initiation by allosteric control of an RNA-binding protein: The Bacillus subtilis TRAP protein
-
Babitzke P. 2004. Regulation of transcription attenuation and translation initiation by allosteric control of an RNA-binding protein: the Bacillus subtilis TRAP protein. Curr. Opin. Microbiol. 7:132-39
-
(2004)
Curr. Opin. Microbiol.
, vol.7
, pp. 132-139
-
-
Babitzke, P.1
-
4
-
-
2342511433
-
New RNA motifs suggest an expanded scope for riboswitches in bacterial genetic control
-
Barrick JE, Corbino KA, Winkler WC, Nahvi A, Mandal M, et al. 2004. New RNA motifs suggest an expanded scope for riboswitches in bacterial genetic control. Proc. Natl. Acad. Sci. USA 101:6421-26
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 6421-6426
-
-
Barrick, J.E.1
Corbino, K.A.2
Winkler, W.C.3
Nahvi, A.4
Mandal, M.5
-
5
-
-
9244225713
-
Structure of a natural guanine-responsive riboswitch complexed with the metabolite hypoxanthine
-
Batey RT, Gilbert SD, Montange RK. 2004. Structure of a natural guanine-responsive riboswitch complexed with the metabolite hypoxanthine. Nature 432:411-15
-
(2004)
Nature
, vol.432
, pp. 411-415
-
-
Batey, R.T.1
Gilbert, S.D.2
Montange, R.K.3
-
6
-
-
0018632789
-
Isolation and identification of mutants constitutive for aspartokinase III synthesis in Escherichia coli K12
-
Boy E, Borne F, Patte JC. 1979. Isolation and identification of mutants constitutive for aspartokinase III synthesis in Escherichia coli K12. Biochemie 61:1151-60
-
(1979)
Biochemie
, vol.61
, pp. 1151-1160
-
-
Boy, E.1
Borne, F.2
Patte, J.C.3
-
7
-
-
0036469778
-
Engineered allosteric ribozymes as biosensor components
-
Breaker RR. 2002. Engineered allosteric ribozymes as biosensor components. Curr. Opin. Biotecbnol. 13:31-39
-
(2002)
Curr. Opin. Biotecbnol.
, vol.13
, pp. 31-39
-
-
Breaker, R.R.1
-
8
-
-
11144330098
-
Natural and engineered nucleic acids as tools to explore biology
-
Breaker RR. 2004. Natural and engineered nucleic acids as tools to explore biology. Nature 432:838-15
-
(2004)
Nature
, vol.432
, pp. 838-915
-
-
Breaker, R.R.1
-
9
-
-
1842591130
-
The regulation of bacterial transcription initiation
-
Browning DF, Busby SJ. 2004. The regulation of bacterial transcription initiation. Nat. Rev. Microbiol. 2:57-65
-
(2004)
Nat. Rev. Microbiol.
, vol.2
, pp. 57-65
-
-
Browning, D.F.1
Busby, S.J.2
-
10
-
-
0030894628
-
Xanthine metabolism in Bacillus subtilis: Characterization of the xpt-pbuX operon and evidence for purine- And nitrogen-controlled expression of genes involved in xanthine salvage and catabolism
-
Christiansen LC, Schou S, Nygaard P, Saxild HH. 1997. Xanthine metabolism in Bacillus subtilis: characterization of the xpt-pbuX operon and evidence for purine- and nitrogen-controlled expression of genes involved in xanthine salvage and catabolism. J. Bacteriol. 179:2540-50
-
(1997)
J. Bacteriol.
, vol.179
, pp. 2540-2550
-
-
Christiansen, L.C.1
Schou, S.2
Nygaard, P.3
Saxild, H.H.4
-
11
-
-
0037977118
-
RNA processing and degradation in Bacillus subtilis
-
Condon C. 2003. RNA processing and degradation in Bacillus subtilis. Microbiol. Mol. Biol. Rev. 67:157-74
-
(2003)
Microbiol. Mol. Biol. Rev.
, vol.67
, pp. 157-174
-
-
Condon, C.1
-
12
-
-
0141541812
-
Regulation of gene expression by stop codon receding: Selenocysteine
-
Copeland PR. 2003. Regulation of gene expression by stop codon receding: selenocysteine. Gene 312:17-25
-
(2003)
Gene
, vol.312
, pp. 17-25
-
-
Copeland, P.R.1
-
13
-
-
6044261460
-
Genetic screens and selections for small molecules based on a synthetic riboswitch that activates protein translation
-
Desai SK, Gallivan JP. 2004. Genetic screens and selections for small molecules based on a synthetic riboswitch that activates protein translation. J. Am. Chem. Soc. 126:13247-54
-
(2004)
J. Am. Chem. Soc.
, vol.126
, pp. 13247-13254
-
-
Desai, S.K.1
Gallivan, J.P.2
-
15
-
-
0023655214
-
Cloningand characterization of a 12-gene cluster from Bacillus subtilis encoding nine enzymes for de novo purine nucleotide synthesis
-
Ebbole DJ, Zalkin H. 1987.Cloningand characterization of a 12-gene cluster from Bacillus subtilis encoding nine enzymes for de novo purine nucleotide synthesis. J. Biol. Chem. 262:8274-87
-
(1987)
J. Biol. Chem.
, vol.262
, pp. 8274-8287
-
-
Ebbole, D.J.1
Zalkin, H.2
-
16
-
-
0038476616
-
The riboswitch-mediated control of sulfur metabolism in bacteria
-
Epshtein V, Mironov AS, Nudler E. 2003. The riboswitch-mediated control of sulfur metabolism in bacteria. Proc. Natl. Acad. Sci. USA 100:5052-56
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 5052-5056
-
-
Epshtein, V.1
Mironov, A.S.2
Nudler, E.3
-
17
-
-
0023186475
-
Regulation of cobalamin biosynthetic operons in Salmonella typhimurium
-
Escalante-Semerena JC, Roth JR. 1987. Regulation of cobalamin biosynthetic operons in Salmonella typhimurium. J. Bacteriol. 169:2251-58
-
(1987)
J. Bacteriol.
, vol.169
, pp. 2251-2258
-
-
Escalante-Semerena, J.C.1
Roth, J.R.2
-
18
-
-
0033230755
-
A conserved RNA structure element involved in the regulation of bacterial riboflavin synthesis genes
-
Gelfand MS, Mironov AA, Jomantas J, Kozlov YI, Perumov DA. 1999. A conserved RNA structure element involved in the regulation of bacterial riboflavin synthesis genes. Trends Genet. 15:439-12
-
(1999)
Trends Genet.
, vol.15
, pp. 439-512
-
-
Gelfand, M.S.1
Mironov, A.A.2
Jomantas, J.3
Kozlov, Y.I.4
Perumov, D.A.5
-
19
-
-
0037423679
-
Solution structure of the Bacillus subtilis T-box antiterminator RNA: Seven nucleotide bulge characterized by stacking and flexibility
-
Gerdeman MS, Henkin TM, Hines JV. 2003. Solution structure of the Bacillus subtilis T-box antiterminator RNA: seven nucleotide bulge characterized by stacking and flexibility. J. Mol. Biol. 326:189-201
-
(2003)
J. Mol. Biol.
, vol.326
, pp. 189-201
-
-
Gerdeman, M.S.1
Henkin, T.M.2
Hines, J.V.3
-
21
-
-
4344682527
-
The small RNA regulators of Escherichia coli: Roles and mechanisms
-
Gottesman S. 2004. The small RNA regulators of Escherichia coli: roles and mechanisms. Annu. Rev. Microbiol. 58:303-28
-
(2004)
Annu. Rev. Microbiol.
, vol.58
, pp. 303-328
-
-
Gottesman, S.1
-
22
-
-
0034845858
-
Inducible regulation of the S. cerevisiae cell cycle mediated by an RNA aptamer-ligand complex
-
Grate D, Wilson C. 2001. Inducible regulation of the S. cerevisiae cell cycle mediated by an RNA aptamer-ligand complex. Bioorg. Med. Chem. 9:2565-70
-
(2001)
Bioorg. Med. Chem.
, vol.9
, pp. 2565-2570
-
-
Grate, D.1
Wilson, C.2
-
23
-
-
0037252684
-
Rfam: An RNA family database
-
Griffiths-Jones S, Bateman A, Marshall M, Khanna A, Eddy SR. 2003. Rfam: an RNA family database. Nucleic Acids Res. 31:439-41
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 439-441
-
-
Griffiths-Jones, S.1
Bateman, A.2
Marshall, M.3
Khanna, A.4
Eddy, S.R.5
-
24
-
-
0033867256
-
tRNA determinants for transcription antitermination of the Bacillus subtilis tyrS gene
-
Grundy FJ, Collins JA, Rollins SM, Henkin TM. 2000. tRNA determinants for transcription antitermination of the Bacillus subtilis tyrS gene. RNA 6:1131-41
-
(2000)
RNA
, vol.6
, pp. 1131-1141
-
-
Grundy, F.J.1
Collins, J.A.2
Rollins, S.M.3
Henkin, T.M.4
-
25
-
-
0027234192
-
tRNA as a positive regulator of transcription antitermination in B. subtilis
-
Grundy FJ, Henkin TM. 1993. tRNA as a positive regulator of transcription antitermination in B. subtilis. Cell 74:475-82
-
(1993)
Cell
, vol.74
, pp. 475-482
-
-
Grundy, F.J.1
Henkin, T.M.2
-
26
-
-
0031735563
-
The S box regulon: A new global transcription termination control system for methionine and cysteine biosynthesis genes in gram-positive bacteria
-
Grundy FJ, Henkin TM. 1998. The S box regulon: a new global transcription termination control system for methionine and cysteine biosynthesis genes in gram-positive bacteria. Mol. Microbiol. 30:737-19
-
(1998)
Mol. Microbiol.
, vol.30
, pp. 737-819
-
-
Grundy, F.J.1
Henkin, T.M.2
-
27
-
-
0012567905
-
The T box and S box transcription termination control systems
-
Grundy FJ, Henkin TM. 2003. The T box and S box transcription termination control systems. Front. Biosci. 8:d20-31
-
(2003)
Front. Biosci.
, vol.8
-
-
Grundy, F.J.1
Henkin, T.M.2
-
28
-
-
0030901060
-
Specificity of tRNA-mRNA interactions in Bacillus subtilis tyrS antitermination
-
Grundy FJ, Hodil SE, Rollins SM, Henkin TM. 1997. Specificity of tRNA-mRNA interactions in Bacillus subtilis tyrS antitermination. J. Bacteriol. 179:2587-94
-
(1997)
J. Bacteriol.
, vol.179
, pp. 2587-2594
-
-
Grundy, F.J.1
Hodil, S.E.2
Rollins, S.M.3
Henkin, T.M.4
-
29
-
-
0142123125
-
The L box regulon: Lysine sensing by leader RNAs of bacterial lysine biosynthesis genes
-
Grundy FJ, Lehman SC, Henkin TM. 2003. The L box regulon: lysine sensing by leader RNAs of bacterial lysine biosynthesis genes. Proc. Natl. Acad. Sci. USA. 100:12057-62
-
(2003)
Proc. Natl. Acad. Sci. USA.
, vol.100
, pp. 12057-12062
-
-
Grundy, F.J.1
Lehman, S.C.2
Henkin, T.M.3
-
30
-
-
0028025386
-
Interaction between the acceptor end of tRNA and the T box stimulates antitermination in the Bacillus subtilis tyrS gene: A new role for the discriminator base
-
Grundy FJ, Rollins SM, Henkin TM. 1994. Interaction between the acceptor end of tRNA and the T box stimulates antitermination in the Bacillus subtilis tyrS gene: a new role for the discriminator base. J. Bacteriol. 176:4518-26
-
(1994)
J. Bacteriol.
, vol.176
, pp. 4518-4526
-
-
Grundy, F.J.1
Rollins, S.M.2
Henkin, T.M.3
-
31
-
-
0037143628
-
tRNA-mediated transcription antitermination in vitro: Codon-anticodon pairing independent of the ribosome
-
Grundy FJ, Winkler WC, Henkin TM. 2 002. tRNA-mediated transcription antitermination in vitro: codon-anticodon pairing independent of the ribosome. Proc. Natl. Acad. Sci. USA 99:11121-26
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 11121-11126
-
-
Grundy, F.J.1
Winkler, W.C.2
Henkin, T.M.3
-
32
-
-
0036077693
-
Translational feedback regulation of the gene for L35 in Escherichia coli requires binding of ribosomal protein L20 to two sites in its leader mRNA: A possible case of ribosomal RNA-messenger RNA molecular mimicry
-
Guillier M, Allemand F, Raibaud S, Dardel F, Springer M, Chiaruttini C. 2002. Translational feedback regulation of the gene for L35 in Escherichia coli requires binding of ribosomal protein L20 to two sites in its leader mRNA: a possible case of ribosomal RNA-messenger RNA molecular mimicry. RNA 8:878-89
-
(2002)
RNA
, vol.8
, pp. 878-889
-
-
Guillier, M.1
Allemand, F.2
Raibaud, S.3
Dardel, F.4
Springer, M.5
Chiaruttini, C.6
-
33
-
-
0033120034
-
The mechanism of intrinsic transcription termination
-
Gusarov I, Nudler E. 1999. The mechanism of intrinsic transcription termination. Mol. Cell 3:495-504
-
(1999)
Mol. Cell
, vol.3
, pp. 495-504
-
-
Gusarov, I.1
Nudler, E.2
-
34
-
-
0035984639
-
Regulation by transcription attenuation in bacteria: How RNA provides instructions for transcription termination/antitermination decisions
-
Henkin TM, Yanofsky C. 2002. Regulation by transcription attenuation in bacteria: how RNA provides instructions for transcription termination/ antitermination decisions. Bioessays 24:700-7
-
(2002)
Bioessays
, vol.24
, pp. 700-707
-
-
Henkin, T.M.1
Yanofsky, C.2
-
35
-
-
0034603154
-
Adaptive recognition by nucleic acids
-
Hermann T, Patel DJ. 2000. Adaptive recognition by nucleic acids. Science 287:820-25
-
(2000)
Science
, vol.287
, pp. 820-825
-
-
Hermann, T.1
Patel, D.J.2
-
37
-
-
0025052636
-
Transcriptional antitermination in the bgl operon of E. coli is modulated by a specific RNA binding protein
-
Houman F, Diaz-Torres MR, Wright A. 1990. Transcriptional antitermination in the bgl operon of E. coli is modulated by a specific RNA binding protein. Cell 62:1153-63
-
(1990)
Cell
, vol.62
, pp. 1153-1163
-
-
Houman, F.1
Diaz-Torres, M.R.2
Wright, A.3
-
38
-
-
0037031594
-
An RNA thermosensor controls expression of virulence genes in Listeria manocy to genes
-
Johansson J, Mandin P, Renzoni A, Chiaruttini C, Springer M, Cossart P. 2002. An RNA thermosensor controls expression of virulence genes in Listeria manocy to genes. Cell 110:551-61
-
(2002)
Cell
, vol.110
, pp. 551-561
-
-
Johansson, J.1
Mandin, P.2
Renzoni, A.3
Chiaruttini, C.4
Springer, M.5
Cossart, P.6
-
39
-
-
0037062978
-
The antiquity of RNA-based evolution
-
Joyce GF. 2002. The antiquity of RNA-based evolution. Nature 418:214-21
-
(2002)
Nature
, vol.418
, pp. 214-221
-
-
Joyce, G.F.1
-
42
-
-
0029931227
-
Lysine-induced premature transcription termination in the lys C operon of Bacillus subtilis
-
Kochhar S, Paulus H. 1992. Lysine-induced premature transcription termination in the lys C operon of Bacillus subtilis. Microbiology 142:1635-39
-
(1992)
Microbiology
, vol.142
, pp. 1635-1639
-
-
Kochhar, S.1
Paulus, H.2
-
43
-
-
0025365307
-
Genetic mapping of regulatory mutations of Bacillus subtilis riboflavin operon
-
Kreneva RA, Perumov DA. 1990. Genetic mapping of regulatory mutations of Bacillus subtilis riboflavin operon. Mol. Gen. Genet. 222:467-69
-
(1990)
Mol. Gen. Genet.
, vol.222
, pp. 467-469
-
-
Kreneva, R.A.1
Perumov, D.A.2
-
44
-
-
0346366823
-
Thiamine-regulated gene expression of Aspergillus oryzae thiA requires splicing of the intron containing a riboswitch-like domain in the 5′-UTR
-
Kubodera T, Watanabe M, Yoshiuchi K, Yamashita N, Nishimura A, et al. 2003. Thiamine-regulated gene expression of Aspergillus oryzae thiA requires splicing of the intron containing a riboswitch-like domain in the 5′-UTR. FEBS Lett. 555:516-20
-
(2003)
FEBS Lett.
, vol.555
, pp. 516-520
-
-
Kubodera, T.1
Watanabe, M.2
Yoshiuchi, K.3
Yamashita, N.4
Nishimura, A.5
-
45
-
-
12344273534
-
Riboswitch structures: Purine ligands replace tertiary contacts
-
Lescoute A, Westhof E. 2005. Riboswitch structures: Purine ligands replace tertiary contacts. Chem. Biol. 12:10-13
-
(2005)
Chem. Biol.
, vol.12
, pp. 10-13
-
-
Lescoute, A.1
Westhof, E.2
-
46
-
-
0033575087
-
Kinetics of RNA degradation by specific base catalysis of transesterification involving the 2′-hydroxyl group
-
Li Y, Breaker RR. 1999. Kinetics of RNA degradation by specific base catalysis of transesterification involving the 2′-hydroxyl group. J. Am. Chem. Soc. 121:5364-72
-
(1999)
J. Am. Chem. Soc.
, vol.121
, pp. 5364-5372
-
-
Li, Y.1
Breaker, R.R.2
-
47
-
-
0026845958
-
Fine structure mapping of cis-acting control sites in the lys C operon of Bacillus subtilis
-
Lu Y, Shevtchenko TN, Paulus H. 1992. Fine structure mapping of cis-acting control sites in the lys C operon of Bacillus subtilis. FEMS Microbiol. Lett. 92:23-27
-
(1992)
FEMS Microbiol. Lett.
, vol.92
, pp. 23-27
-
-
Lu, Y.1
Shevtchenko, T.N.2
Paulus, H.3
-
48
-
-
0038210214
-
Riboswitches control fundamental biochemical pathways in Bacillus subtilis and other bacteria
-
Mandal M, Boese B, Barrick JE, Winkler WC, Breaker RR. 2003. Riboswitches control fundamental biochemical pathways in Bacillus subtilis and other bacteria. Cell 113:577-86
-
(2003)
Cell
, vol.113
, pp. 577-586
-
-
Mandal, M.1
Boese, B.2
Barrick, J.E.3
Winkler, W.C.4
Breaker, R.R.5
-
49
-
-
0842334528
-
Adenine riboswitches and gene activation by disruption of a transcription terminator
-
Mandal M, Breaker RR. 2004. Adenine riboswitches and gene activation by disruption of a transcription terminator. Nat. Struct. Mol. Biol. 11:29-35
-
(2004)
Nat. Struct. Mol. Biol.
, vol.11
, pp. 29-35
-
-
Mandal, M.1
Breaker, R.R.2
-
51
-
-
5044234799
-
A glycine-dependent riboswitch that uses cooperative binding to control gene expression
-
Mandal M, Lee M, Barrick JE, Weinberg Z, Emilsson GM, et al. 2004. A glycine-dependent riboswitch that uses cooperative binding to control gene expression. Science 306:275-79
-
(2004)
Science
, vol.306
, pp. 275-279
-
-
Mandal, M.1
Lee, M.2
Barrick, J.E.3
Weinberg, Z.4
Emilsson, G.M.5
-
52
-
-
0037453069
-
Transcription termination control of the S box system: Direct measurement of S-adenosylmethionine by the leader RNA
-
McDaniel BA, Grundy FJ, Artsimovitch I, Henkin TM. 2003. Transcription termination control of the S box system: direct measurement of S-adenosylmethionine by the leader RNA. Proc. Natl. Acad. Sci. USA 100:3083-88
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 3083-3088
-
-
McDaniel, B.A.1
Grundy, F.J.2
Artsimovitch, I.3
Henkin, T.M.4
-
53
-
-
2442702832
-
The structure of a ribosomal protein S8/spc operon mRNA complex
-
Merianos HJ, Wang J, Moore PB. 2004. The structure of a ribosomal protein S8/spc operon mRNA complex. RNA 10:954-64
-
(2004)
RNA
, vol.10
, pp. 954-964
-
-
Merianos, H.J.1
Wang, J.2
Moore, P.B.3
-
54
-
-
0035859828
-
A conserved RNA structure (thi box) is involved in regulation of thiamin biosynthetic gene expression in bacteria
-
Miranda-Rios J, Navarro M, Soberon M. 2001. A conserved RNA structure (thi box) is involved in regulation of thiamin biosynthetic gene expression in bacteria. Proc. Natl. Acad. Sci. USA 98:9736-41
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 9736-9741
-
-
Miranda-Rios, J.1
Navarro, M.2
Soberon, M.3
-
55
-
-
18744396047
-
Sensing small molecules by nascent RNA: A mechanism to control transcription in bacteria
-
Mironov AS, Gusarov I, Rafikov R, Lopez LE, Shatalin K, et al. 2002. Sensing small molecules by nascent RNA: a mechanism to control transcription in bacteria. Cell 111:747-56
-
(2002)
Cell
, vol.111
, pp. 747-756
-
-
Mironov, A.S.1
Gusarov, I.2
Rafikov, R.3
Lopez, L.E.4
Shatalin, K.5
-
56
-
-
0031801743
-
Information processing by RNA polymerase: Recognition of regulatory signals during RNA chain elongation
-
Mooney RA, Artsimovitch I, Landick R. 1998. Information processing by RNA polymerase: recognition of regulatory signals during RNA chain elongation. J. Bacteriol. 180:3265-75
-
(1998)
J. Bacteriol.
, vol.180
, pp. 3265-3275
-
-
Mooney, R.A.1
Artsimovitch, I.2
Landick, R.3
-
57
-
-
0032870204
-
Structural motifs in RNA
-
Moore PB. 1999. Structural motifs in RNA. Annu. Rev. Biochem. 68:287-300
-
(1999)
Annu. Rev. Biochem.
, vol.68
, pp. 287-300
-
-
Moore, P.B.1
-
60
-
-
0036753365
-
Genetic control by a metabolite binding mRNA
-
Nahvi A, Sudarsan N, Ebert MS, Zou X, Brown KL, Breaker RR. 2002. Genetic control by a metabolite binding mRNA. Chem. Biol. 9:1043
-
(2002)
Chem. Biol.
, vol.9
, pp. 1043
-
-
Nahvi, A.1
Sudarsan, N.2
Ebert, M.S.3
Zou, X.4
Brown, K.L.5
Breaker, R.R.6
-
61
-
-
0036428766
-
mRNA-mediated detection of environmental conditions
-
Narberhaus F. 2002. mRNA-mediated detection of environmental conditions. Arch. Microbiol. 178:404-10
-
(2002)
Arch. Microbiol.
, vol.178
, pp. 404-410
-
-
Narberhaus, F.1
-
63
-
-
13444271576
-
An inter-molecular base triple as the basis of ligand specificity and affinity in the guanine- and adenine-sensing riboswitch RNAs
-
Noeske J, Richter C, Grundl MA, Nasiri HR, Schwalbe H, Wohnert J. 2005. An inter-molecular base triple as the basis of ligand specificity and affinity in the guanine- and adenine-sensing riboswitch RNAs. Proc. Natl. Acad. Sci. USA 102:1372-77
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 1372-1377
-
-
Noeske, J.1
Richter, C.2
Grundl, M.A.3
Nasiri, H.R.4
Schwalbe, H.5
Wohnert, J.6
-
64
-
-
0034691163
-
Adenosylcobalamin inhibits ribosome binding to btuB RNA
-
Nou X, Kadner RJ. 2000. Adenosylcobalamin inhibits ribosome binding to btuB RNA. Proc. Natl. Acad. Sci. USA 97:7190-95
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 7190-7195
-
-
Nou, X.1
Kadner, R.J.2
-
65
-
-
0346687595
-
The riboswitch control of bacterial metabolism
-
Nudler E, Mironov AS. 2004. The riboswitch control of bacterial metabolism. Trends Biochem. Sci. 29:11-17
-
(2004)
Trends Biochem. Sci.
, vol.29
, pp. 11-17
-
-
Nudler, E.1
Mironov, A.S.2
-
66
-
-
0004211673
-
-
Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York
-
Ptashne M, Gann A. 2002. Genes and Signals. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York
-
(2002)
Genes and Signals
-
-
Ptashne, M.1
Gann, A.2
-
67
-
-
0037100612
-
Transfer RNA-mediated antitermination in vitro
-
Putzer H, Condon C, Brechemier-Baey D, Brito R, Grunberg-Manago M. 2002. Transfer RNA-mediated antitermination in vitro. Nucleic Adds Res. 30:3026-33
-
(2002)
Nucleic Adds Res.
, vol.30
, pp. 3026-3033
-
-
Putzer, H.1
Condon, C.2
Brechemier-Baey, D.3
Brito, R.4
Grunberg-Manago, M.5
-
68
-
-
2242446202
-
Comparative genomics of thiamin biosynthesis in prokaryotes. New genes and regulatory mechanisms
-
Rodionov DA, Vitreschak AG, Mironov AA, Gelfand MS. 2002. Comparative genomics of thiamin biosynthesis in prokaryotes. New genes and regulatory mechanisms. J. Biol. Chem. 277:48949-59
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 48949-48959
-
-
Rodionov, D.A.1
Vitreschak, A.G.2
Mironov, A.A.3
Gelfand, M.S.4
-
69
-
-
0345531094
-
Regulation of lysine biosynthesis and transport genes in bacteria: Yet another RNA riboswitch?
-
Rodionov DA, Vitreschak AG, Mironov AA, Gelfand MS. 2003, Regulation of lysine biosynthesis and transport genes in bacteria: yet another RNA riboswitch? Nucleic Acids Res. 31:6748-57
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 6748-6757
-
-
Rodionov, D.A.1
Vitreschak, A.G.2
Mironov, A.A.3
Gelfand, M.S.4
-
70
-
-
3042639887
-
Comparative genomics of the methionine metabolism in gram-positive bacteria: A variety of regulatory systems
-
Rodionov DA, Vitreschak AG, Mironov AA, Gelfand MS. 2004. Comparative genomics of the methionine metabolism in gram-positive bacteria: a variety of regulatory systems. Nucleic Acids Res. 32:3340-53
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 3340-3353
-
-
Rodionov, D.A.1
Vitreschak, A.G.2
Mironov, A.A.3
Gelfand, M.S.4
-
71
-
-
0037373552
-
Bacterial translational control at atomic resolution
-
Romby P, Springer M. 2003. Bacterial translational control at atomic resolution. Trends Genet. 19:155-61
-
(2003)
Trends Genet.
, vol.19
, pp. 155-161
-
-
Romby, P.1
Springer, M.2
-
72
-
-
2942752045
-
Selection in vitro of allosteric ribozymes
-
Roth A, Breaker RR. 2004. Selection in vitro of allosteric ribozymes. Methods Mol. Biol. 252:145-64
-
(2004)
Methods Mol. Biol.
, vol.252
, pp. 145-164
-
-
Roth, A.1
Breaker, R.R.2
-
73
-
-
0042736855
-
2+-dependent RNA tertiary structure forms in the Bacillus subtilis trp operon leader transcript and appears to interfere with trpE translation control by inhibiting TRAP binding
-
2+-dependent RNA tertiary structure forms in the Bacillus subtilis trp operon leader transcript and appears to interfere with trpE translation control by inhibiting TRAP binding. J. Mol. Biol. 332:555-74
-
(2003)
J. Mol. Biol.
, vol.332
, pp. 555-574
-
-
Schaak, J.E.1
Yakhnin, H.2
Bevilacqua, P.C.3
Babitzke, P.4
-
74
-
-
3042808647
-
A protein-dependent riboswitch controlling ptsGHI operon expression in Bacillus subtilis: RNA structure rather than sequence provides interaction specificity
-
Schilling O, Langbein I, Muller M, Schmalisch MH, Stulke J. 2004. A protein-dependent riboswitch controlling ptsGHI operon expression in Bacillus subtilis: RNA structure rather than sequence provides interaction specificity. Nucleic Acids Res. 32:2853-64
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 2853-2864
-
-
Schilling, O.1
Langbein, I.2
Muller, M.3
Schmalisch, M.H.4
Stulke, J.5
-
75
-
-
0037783314
-
Translational repression mechanisms in prokaryotes
-
Schlax PJ, Worhunsky DJ. 2003. Translational repression mechanisms in prokaryotes. Mol. Microbiol. 48:1157-69
-
(2003)
Mol. Microbiol.
, vol.48
, pp. 1157-1169
-
-
Schlax, P.J.1
Worhunsky, D.J.2
-
76
-
-
0035070585
-
Immobilized RNA switches for the analysis of complex chemical and biological mixtures
-
Seetharaman S, Zivarts M, Sudarsan N, Breaker RR. 2001. Immobilized RNA switches for the analysis of complex chemical and biological mixtures. Nat. Biotecbnol. 19:336-41
-
(2001)
Nat. Biotecbnol.
, vol.19
, pp. 336-341
-
-
Seetharaman, S.1
Zivarts, M.2
Sudarsan, N.3
Breaker, R.R.4
-
77
-
-
10644250950
-
Structural basis for discriminative regulation of gene expression by adenine- and guanine-sensing mRNAs
-
Serganov A, Yuan YR, Pikovskaya O, Polonskaia A, Malinina L, et al. 2004. Structural basis for discriminative regulation of gene expression by adenine- and guanine-sensing mRNAs. Chem. Biol. 11:1729-41
-
(2004)
Chem. Biol.
, vol.11
, pp. 1729-1741
-
-
Serganov, A.1
Yuan, Y.R.2
Pikovskaya, O.3
Polonskaia, A.4
Malinina, L.5
-
78
-
-
0037388001
-
Conditional gene expression by controlling translation with tetracycline-binding aptamers
-
Seuss B, Hanson S, Berens C, Fink B, Schroeder R, Hillen W. 2003. Conditional gene expression by controlling translation with tetracycline-binding aptamers. Nucleic Acids Res. 31:1853-58
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 1853-1858
-
-
Seuss, B.1
Hanson, S.2
Berens, C.3
Fink, B.4
Schroeder, R.5
Hillen, W.6
-
79
-
-
27144520159
-
Appendix 2
-
ed. AL Sonenshein, JA Hoch, R Losick. Washington, DC: ASM Press
-
Sonenshein AL. 2002. Appendix 2. In Bacillus subtilis and Its Closest Relatives: From Genes to Cells, ed. AL Sonenshein, JA Hoch, R Losick, pp. 602-6. Washington, DC: ASM Press
-
(2002)
Bacillus Subtilis and Its Closest Relatives: From Genes to Cells
, pp. 602-606
-
-
Sonenshein, A.L.1
-
80
-
-
0032831634
-
Relationship between internucleotide linkage geometry and the stability of RNA
-
Soukup GA, Breaker RR. 1999. Relationship between internucleotide linkage geometry and the stability of RNA. RNA 5:1308-25
-
(1999)
RNA
, vol.5
, pp. 1308-1325
-
-
Soukup, G.A.1
Breaker, R.R.2
-
81
-
-
0035001974
-
Generating new ligand-binding RNAs by affinity maturation and disintegration of allosteric ribozymes
-
Soukup GA, DeRose EC, Koizumi M, Breaker RR. 2001. Generating new ligand-binding RNAs by affinity maturation and disintegration of allosteric ribozymes. RNA 7:524-36
-
(2001)
RNA
, vol.7
, pp. 524-536
-
-
Soukup, G.A.1
DeRose, E.C.2
Koizumi, M.3
Breaker, R.R.4
-
82
-
-
0000484128
-
RNA mimicry in the translational apparatus
-
ed. RW Simons, M Grunberg-Manago. Cold Spring Harbor, NY: Cold Spring Harbor Lab. Press
-
Springer M, Portier C, Grunberg-Manago M. 1997. RNA mimicry in the translational apparatus. In RNA Structure and Function, ed. RW Simons, M Grunberg-Manago, pp. 377-414. Cold Spring Harbor, NY: Cold Spring Harbor Lab. Press
-
(1997)
RNA Structure and Function
, pp. 377-414
-
-
Springer, M.1
Portier, C.2
Grunberg-Manago, M.3
-
83
-
-
0041845245
-
RNA-structural mimicry in Escherichia coli ribosomal protein Independent regulation of the S10 operon
-
Steltzl U, Zengel JM, Tovbina M, Walker M, Nierhaus KH, et al. 2003. RNA-structural mimicry in Escherichia coli ribosomal protein Independent regulation of the S10 operon. J. Biol. Chem. 278:28237-45
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 28237-28245
-
-
Steltzl, U.1
Zengel, J.M.2
Tovbina, M.3
Walker, M.4
Nierhaus, K.H.5
-
84
-
-
0035859803
-
Do mRNAs act as direct sensors of small molecules to control their expression?
-
Stormo GD, Ji Y. 2001. Do mRNAs act as direct sensors of small molecules to control their expression? Proc. Natl. Acad. Sci. USA 98:9465-67
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 9465-9467
-
-
Stormo, G.D.1
Ji, Y.2
-
85
-
-
1842453716
-
Controlling mRNA stability and translation with small, noncoding RNAs
-
Storz G, Opdyke JA, Zhang A. 2004. Controlling mRNA stability and translation with small, noncoding RNAs. Curr. Opin. Microbiol. 7:140-44
-
(2004)
Curr. Opin. Microbiol.
, vol.7
, pp. 140-144
-
-
Storz, G.1
Opdyke, J.A.2
Zhang, A.3
-
86
-
-
0036272874
-
Control of transcription termination in bacteria by RNA-binding proteins that modulate RNA structures
-
Stulke J. 2002. Control of transcription termination in bacteria by RNA-binding proteins that modulate RNA structures. Arch. Microbiol. 177:433-40
-
(2002)
Arch. Microbiol.
, vol.177
, pp. 433-440
-
-
Stulke, J.1
-
87
-
-
0038136962
-
Metabolite-binding RNA domains are present in the genes of eukaryotes
-
Sudarsan N, Barrick JE, Breaker RR. 2003. Metabolite-binding RNA domains are present in the genes of eukaryotes. RNA 9:644-47
-
(2003)
RNA
, vol.9
, pp. 644-647
-
-
Sudarsan, N.1
Barrick, J.E.2
Breaker, R.R.3
-
88
-
-
0242298623
-
An mRNA structure in bacteria that controls gene expression by binding lysine
-
Sudarsan N, Wickiser JK, Nakamura S, Ebert MS, Breaker RR. 2003. An mRNA structure in bacteria that controls gene expression by binding lysine. Genes Dev. 17:2688-97
-
(2003)
Genes Dev.
, vol.17
, pp. 2688-2697
-
-
Sudarsan, N.1
Wickiser, J.K.2
Nakamura, S.3
Ebert, M.S.4
Breaker, R.R.5
-
90
-
-
2542488265
-
Regulating eukaryotic gene expression with aptamers
-
Toulme JJ, Di Primo C, Boucard D. 2004. Regulating eukaryotic gene expression with aptamers. FEBS Lett. 567:55-62
-
(2004)
FEBS Lett.
, vol.567
, pp. 55-62
-
-
Toulme, J.J.1
Di Primo, C.2
Boucard, D.3
-
91
-
-
0142106950
-
RNA as a drug target: The case of aminoglycosides
-
Vicens Q, Westhof E. 2003. RNA as a drug target: the case of aminoglycosides. Chembiochem 4:1018-23
-
(2003)
Chembiochem
, vol.4
, pp. 1018-1023
-
-
Vicens, Q.1
Westhof, E.2
-
92
-
-
0037100667
-
Regulation of riboflavin biosynthesis and transport genes in bacteria by transcriptional and translational attenuation
-
Vitreschak AG, Rodionov DA, Mironov AA, Gelfand MS. 2002. Regulation of riboflavin biosynthesis and transport genes in bacteria by transcriptional and translational attenuation. Nucleic Acids Res. 30:3141-51
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 3141-3151
-
-
Vitreschak, A.G.1
Rodionov, D.A.2
Mironov, A.A.3
Gelfand, M.S.4
-
95
-
-
0344237410
-
RNomics in Eschericbia coli detects new sRNA species and indicates parallel transcriptional output in bacteria
-
Vogel J, Bartels V, Tang TH, Churakov G, Slagter-Jager JG, et al. 2003. RNomics in Eschericbia coli detects new sRNA species and indicates parallel transcriptional output in bacteria. Nucleic Acids Res. 31:6435-43
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 6435-6443
-
-
Vogel, J.1
Bartels, V.2
Tang, T.H.3
Churakov, G.4
Slagter-Jager, J.G.5
-
96
-
-
0016613122
-
Regulation of dihydrodipicolinate synthase and aspartate kinase in Bacillus subtilis
-
Vold B, Szulmajster J, Carbone A. 1975. Regulation of dihydrodipicolinate synthase and aspartate kinase in Bacillus subtilis. J. Bacteriol. 121:970-74
-
(1975)
J. Bacteriol.
, vol.121
, pp. 970-974
-
-
Vold, B.1
Szulmajster, J.2
Carbone, A.3
-
98
-
-
0029116343
-
Identification of the Bacillus subtilis pur operon repressor
-
Weng M, Nagy P, Zalkin H. 1995. Identification of the Bacillus subtilis pur operon repressor. Proc. Natl. Acad. Sci. USA 92:7455-59
-
(1995)
Proc. Natl. Acad. Sci. USA
, vol.92
, pp. 7455-7459
-
-
Weng, M.1
Nagy, P.2
Zalkin, H.3
-
99
-
-
0032500736
-
Controlling gene expression in living cells through small molecule-RNA interactions
-
Werstuck G, Green MR. 1998. Controlling gene expression in living cells through small molecule-RNA interactions. Science 282:296-98
-
(1998)
Science
, vol.282
, pp. 296-298
-
-
Werstuck, G.1
Green, M.R.2
-
100
-
-
0017232521
-
Coenzymes as fossils of an earlier metabolic state
-
White HB. 1976. Coenzymes as fossils of an earlier metabolic state. J. Mol. Evol. 7:101-4
-
(1976)
J. Mol. Evol.
, vol.7
, pp. 101-104
-
-
White, H.B.1
-
101
-
-
15944382675
-
The speed of RNA transcription and metabolite binding kinetics operate an FMN riboswitch
-
Wickiser JK, Winkler WC, Breaker RR, Crothers DM. 2005. The speed of RNA transcription and metabolite binding kinetics operate an FMN riboswitch. Mol. Cell 18:49-60
-
(2005)
Mol. Cell
, vol.18
, pp. 49-60
-
-
Wickiser, J.K.1
Winkler, W.C.2
Breaker, R.R.3
Crothers, D.M.4
-
102
-
-
0037206833
-
Thiamine derivatives bind messenger RNAs directly to regulate bacterial gene expression
-
Winkler W, Nahvi A, Breaker RR. 2002. Thiamine derivatives bind messenger RNAs directly to regulate bacterial gene expression. Nature 419:952-56
-
(2002)
Nature
, vol.419
, pp. 952-956
-
-
Winkler, W.1
Nahvi, A.2
Breaker, R.R.3
-
103
-
-
17444403921
-
Metabolic monitoring by bacterial mRNAs
-
Winkler WC. 2005. Metabolic monitoring by bacterial mRNAs. Arch. Microbiol. 183:151-59
-
(2005)
Arch. Microbiol.
, vol.183
, pp. 151-159
-
-
Winkler, W.C.1
-
104
-
-
0142075327
-
Genetic control by metabolite-binding riboswitches
-
Winkler WC, Breaker RR. 2003. Genetic control by metabolite-binding riboswitches. Chembiocbem 4:1024-32
-
(2003)
Chembiocbem
, vol.4
, pp. 1024-1032
-
-
Winkler, W.C.1
Breaker, R.R.2
-
106
-
-
0034897731
-
The GA motif: An RNA element common to bacterial antitermination systems, rRNA, and eukaryotic RNAs
-
Winkler WC, Grundy FJ, Murphy BA, Henkin TM. 2001. The GA motif: an RNA element common to bacterial antitermination systems, rRNA, and eukaryotic RNAs. RNA 7:1165-72
-
(2001)
RNA
, vol.7
, pp. 1165-1172
-
-
Winkler, W.C.1
Grundy, F.J.2
Murphy, B.A.3
Henkin, T.M.4
-
107
-
-
1642586299
-
Control of gene expression by a natural metabolite-responsive ribozyme
-
Winkler WC, Nahvi A, Roth A, Collins JA, Breaker RR. 2004. Control of gene expression by a natural metabolite-responsive ribozyme. Nature 428:281-86
-
(2004)
Nature
, vol.428
, pp. 281-286
-
-
Winkler, W.C.1
Nahvi, A.2
Roth, A.3
Collins, J.A.4
Breaker, R.R.5
-
108
-
-
0042320361
-
An mRNA structure that controls gene expression by binding S-adenosylmethionine
-
Winkler WC, Nahvi A, Sudarsan N, Barrick JE, Breaker RR. 2003. An mRNA structure that controls gene expression by binding S-adenosylmethionine. Nat. Struct. Biol. 10:701-7
-
(2003)
Nat. Struct. Biol.
, vol.10
, pp. 701-707
-
-
Winkler, W.C.1
Nahvi, A.2
Sudarsan, N.3
Barrick, J.E.4
Breaker, R.R.5
-
109
-
-
0347915671
-
The trp RNA-binding attenuation protein of Bacillus subtilis regulates translation of the tryptophan transport gene trpP (yhaG) by blocking ribosome binding
-
Yakhnin H, Zhang H, Yakhnin AV, Babitzke P. 2004. The trp RNA-binding attenuation protein of Bacillus subtilis regulates translation of the tryptophan transport gene trpP (yhaG) by blocking ribosome binding. J. Bacteriol. 186:278-86
-
(2004)
J. Bacteriol.
, vol.186
, pp. 278-286
-
-
Yakhnin, H.1
Zhang, H.2
Yakhnin, A.V.3
Babitzke, P.4
-
110
-
-
0033597435
-
Mechanism of intrinsic transcription termination and antitermination
-
Yarnell WS, Roberts JW. 1999. Mechanism of intrinsic transcription termination and antitermination. Science 284:611-15
-
(1999)
Science
, vol.284
, pp. 611-615
-
-
Yarnell, W.S.1
Roberts, J.W.2
-
111
-
-
4644275337
-
Exogenous control of mammalian gene expression through modulation of RNA self-cleavage
-
Yen L, Svendsen J, Lee JS, Gray JT, Magnier M, et al. 2004. Exogenous control of mammalian gene expression through modulation of RNA self-cleavage. Nature 431:471-76
-
(2004)
Nature
, vol.431
, pp. 471-476
-
-
Yen, L.1
Svendsen, J.2
Lee, J.S.3
Gray, J.T.4
Magnier, M.5
|