Mechanism for allosteric inhibition of an ATP-sensitive ribozyme

Nucleic Acids Research

Volumn 26, Issue 18, 1998, Pages 4214-4221

  Tang, Jin ^a   Breaker, Ronald R ^a  

^a YALE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ADENOSINE TRIPHOSPHATE; RIBOZYME;

ALLOSTERISM; ARTICLE; CONFORMATIONAL TRANSITION; LIGAND BINDING; PRIORITY JOURNAL; PROTEIN TERTIARY STRUCTURE; STEREOSPECIFICITY;

ADENOSINE TRIPHOSPHATE; ALLOSTERIC REGULATION; ALLOSTERIC SITE; BASE PAIRING; BASE SEQUENCE; BINDING SITES; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; NUCLEIC ACID CONFORMATION; RNA, CATALYTIC;

EID: 0032530868     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/26.18.4214     Document Type: Article

References (41)

1. Monod, J. and Jacob, F. (1961) Cold Spring Harbor Symp. Quant. Biol., 26, 389-401.
2. Monod, J., Changeux, J.-P. and Jacob, F. (1963) J. Mol. Biol., 6, 306-329.
3. Kurganov, B.I. (1978) Allosteric Enzymes. John Wiley & Sons Ltd, New York, NY.
4. Perutz, M. (1994) Mechanisms of Cooperativity and Allosteric Regulation in Proteins. Cambridge University Press, New York, NY.
5. von Ahsen, U., Davies, J. and Schroeder, R. (1991) Nature, 353, 368-370.
6. Wank, H., Rogers, J., Davies, J. and Schroder, R. (1994) J. Mol. Biol., 236, 1001-1010.
7. Clouet-d'Orval, B., Stage, T.K. and Uhlenbeck, O.C. (1995) Biochemistry, 34, 11186-11190.
8. Olive, J.E., De Abreu, D.M, Rastogi, T., Anderson, A.A., Mittermaier, A.K., Beattie, T.L. and Collins, R.A. (1995). EMBO J., 14, 3247-3251.
9. Peracchi, A., Beigelman, L., Usman, N. and Herschlag, D. (1996) Proc. Natl Acad. Sci. USA, 93, 11522-11527.
10. Porta, H. and Lizardi, P.M. (1995) Biotechnology, 13, 161-164.
11. Millen, W.A. and Silver, S.L. (1991) Nucleic Acids Res., 19, 5313-5320.
12. Tang, J. and Breaker, R.R. (1997) Chem. Biol., 4, 453-459.
13. Sassanfar, M. and Szostak, J.W. (1993) Nature, 364, 550-553.
14. Forster, A.C. and Symons, R.H. (1987) Cell, 49, 211-220.
15. Ferrin, T.E., Huang, C.C., Jarvis, L.E. and Langridge, R. (1988) J. Mol. Graphics, 6, 13-27.
16. Scott, W.G., Finch, J.T. and Klug, A. (1995) Cell, 81, 991-1002.
17. Jiang, F., Kumar, R.A., Jones, R.A. and Patel, D.J. (1996) Nature, 382, 183-186.
18. Tang, J. and Breaker, R.R. (1997) RNA, 3, 914-925.
19. Pley, H.W., Flaheny, K.M. and McKay, D.B. (1994) Nature, 372, 68-74.
20. Scott, W.G., Murray, J.B., Amold, J.R.P., Stoddard, B.L. and Klug, A. (1997) Science, 274, 2065-2069.
21. Feig, A.L., Scott, W.G., and Uhlenbeck, O.C. (1998) Science, 279, 81-84.
22. Tuschl, T., Gohlke, C., Jovin, J.M., Westhof, E. and Eckstein, F. (1994) Science, 266, 785-789.
23. Sigurdsson, S.T, Tuschl, T. and Eckstein, F. (1995) RNA, 1, 575-583.
24. Bassi, G.S., Mollegaard, N.-E., Murchie, A.I.H., von Kitzing, E. and Lilley, D.M.J. (1995) Nat. Struct. Biol., 2, 45-55.
25. Tuschl, T. and Eckstein, F. (1993) Proc. Natl Acad. Sci. USA, 90, 6991-6994.
26. Long, D.M. and Uhlenbeck, O.C. (1994) Proc. Natl Acad. Sci. USA, 91, 6977-6981.
27. Dieckmann, T., Suzuki, E., Nakamura, G.K. and Feigon, J. (1996) RNA, 2, 628-640.
28. Arnott, S., Hukins, D.W.L. and Dover, S.D. (1972) Biochem. Biophys. Res. Commun., 48, 1392-1399.
29. Saenger, W. (1984) Principles of Nucleic Acid Structure. Springer-Verlag, New York, NY, pp. 220-241.
30. Monod, J., Wyman J. and Changeux, J.P. (1965) J. Mol. Biol., 208, 307-325.
31. Koshland, D.E., Nemethy, G. and Filmer, D. (1966) Biochemistry, 5, 365-385.
32. Marmorstein, R.Q. and Sigler, P.B. (1989) Nucleic Acids Mol. Biol., 3, 56-78.
33. Carey, J. (1988) Proc. Natl Acad. Sci. USA, 85, 975-979.
34. Pyle, A.M. and Green, J.B. (1995) Curr. Biol., 5, 303-310.
35. Draper, D.E. (1996) Trends Biochem. Sci., 21, 145-149.
36. Westhof, E., Masquida, B. and Jaeger, L. (1996) Fold. Des., 1, 78-88.
37. Williams, K.P. and Bartel, D.P. (1996) Nucleic Acids Mol. Biol., 10, 367-381.
38. Osborne, S.E. and Ellington, A.D. (1997) Chem. Rev., 97, 349-370.
39. Breaker, R.R. (1997) Chem. Rev., 97, 371-390.
40. Breaker, R.R. (1997) Nat. Biotechnol., 15, 427-131.
41. Breaker, R.R. (1997) Curr. Opin. Chem. Biol., 1, 26-31.