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Volumn 25, Issue 1, 2016, Pages 42-66

The population genetics of drug resistance evolution in natural populations of viral, bacterial and eukaryotic pathogens

Author keywords

adaptation; clonal interference; epistasis; horizontal gene transfer; selective sweep; standing genetic variation

Indexed keywords

DRUG RESISTANCE; EPISTASIS; GENE REARRANGEMENT; GENETIC RECOMBINATION; GENETIC SELECTION; GENETIC VARIATION; GENETICS; HUMAN IMMUNODEFICIENCY VIRUS; MOLECULAR EVOLUTION; MYCOBACTERIUM TUBERCULOSIS; ORTHOMYXOVIRIDAE; PLASMODIUM FALCIPARUM; POPULATION GENETICS; STAPHYLOCOCCUS AUREUS;

EID: 84954060000     PISSN: 09621083     EISSN: 1365294X     Source Type: Journal    
DOI: 10.1111/mec.13474     Document Type: Review
Times cited : (34)

References (212)
  • 1
    • 4344672299 scopus 로고    scopus 로고
    • A reverse genetics study of resistance to neuraminidase inhibitors in an influenza A/H1N1 virus
    • Abed Y, Goyette N, Boivin G, (2004) A reverse genetics study of resistance to neuraminidase inhibitors in an influenza A/H1N1 virus. Antiviral Therapy, 9, 577-582
    • (2004) Antiviral Therapy , vol.9 , pp. 577-582
    • Abed, Y.1    Goyette, N.2    Boivin, G.3
  • 2
    • 84889677831 scopus 로고    scopus 로고
    • Mutational and fitness landscapes of an RNA virus revealed through population sequencing
    • Acevedo A, Brodsky L, Andino R, (2014) Mutational and fitness landscapes of an RNA virus revealed through population sequencing. Nature, 505, 686-690
    • (2014) Nature , vol.505 , pp. 686-690
    • Acevedo, A.1    Brodsky, L.2    Andino, R.3
  • 3
    • 77957764194 scopus 로고    scopus 로고
    • Microevolution of Mycobacterium tuberculosis in a tuberculosis patient
    • Al-Hajoj SAM, Akkerman O, Parwati I, et al. (2010) Microevolution of Mycobacterium tuberculosis in a tuberculosis patient. Journal of Clinical Microbiology, 48, 3813-3816
    • (2010) Journal of Clinical Microbiology , vol.48 , pp. 3813-3816
    • Al-Hajoj, S.A.M.1    Akkerman, O.2    Parwati, I.3
  • 5
    • 78650480349 scopus 로고    scopus 로고
    • How can we identify parasite genes that underlie antimalarial drug resistance?
    • Anderson T, Nkhoma S, Ecker A, Fidock D, (2011) How can we identify parasite genes that underlie antimalarial drug resistance? Pharmacogenomics, 12, 59-85
    • (2011) Pharmacogenomics , vol.12 , pp. 59-85
    • Anderson, T.1    Nkhoma, S.2    Ecker, A.3    Fidock, D.4
  • 6
    • 84892372929 scopus 로고    scopus 로고
    • A molecular marker of artemisinin-resistant Plasmodium falciparum malaria
    • Ariey F, Witkowski B, Amaratunga C, et al. (2014) A molecular marker of artemisinin-resistant Plasmodium falciparum malaria. Nature, 505, 50-55
    • (2014) Nature , vol.505 , pp. 50-55
    • Ariey, F.1    Witkowski, B.2    Amaratunga, C.3
  • 9
    • 13444269543 scopus 로고    scopus 로고
    • Haploview: Analysis and visualization of LD and haplotype maps
    • Barrett JC, Fry B, Maller J, Daly MJ, (2005) Haploview: analysis and visualization of LD and haplotype maps. Bioinformatics, 21, 263-265
    • (2005) Bioinformatics , vol.21 , pp. 263-265
    • Barrett, J.C.1    Fry, B.2    Maller, J.3    Daly, M.J.4
  • 10
    • 84920192213 scopus 로고    scopus 로고
    • Molecular mechanism of the enhanced viral fitness contributed by secondary mutations in the hemagglutinin protein of oseltamivir resistant H1N1 influenza viruses: Modeling studies of antibody and receptor binding
    • Behera AK, Basu S, Cherian SS, (2015) Molecular mechanism of the enhanced viral fitness contributed by secondary mutations in the hemagglutinin protein of oseltamivir resistant H1N1 influenza viruses: modeling studies of antibody and receptor binding. Gene, 557, 19-27
    • (2015) Gene , vol.557 , pp. 19-27
    • Behera, A.K.1    Basu, S.2    Cherian, S.S.3
  • 11
    • 62749200513 scopus 로고    scopus 로고
    • Drug resistance mutations for surveillance of transmitted HIV-1 drug-resistance: 2009 update
    • Bennett DE, Camacho RJ, Otelea D, et al. (2009) Drug resistance mutations for surveillance of transmitted HIV-1 drug-resistance: 2009 update. PLoS ONE, 4, e4724
    • (2009) PLoS ONE , vol.4 , pp. e4724
    • Bennett, D.E.1    Camacho, R.J.2    Otelea, D.3
  • 13
    • 80052153094 scopus 로고    scopus 로고
    • The genomic rate of molecular adaptation of the human influenza A virus
    • Bhatt S, Holmes EC, Pybus OG, (2011) The genomic rate of molecular adaptation of the human influenza A virus. Molecular Biology and Evolution, 28, 2443-2451
    • (2011) Molecular Biology and Evolution , vol.28 , pp. 2443-2451
    • Bhatt, S.1    Holmes, E.C.2    Pybus, O.G.3
  • 15
    • 77955637274 scopus 로고    scopus 로고
    • Methicillin resistance transfer from Staphylocccus epidermidis to methicillin-susceptible Staphylococcus aureus in a patient during antibiotic therapy
    • Bloemendaal A, Brouwer EC, Fluit AC, (2010) Methicillin resistance transfer from Staphylocccus epidermidis to methicillin-susceptible Staphylococcus aureus in a patient during antibiotic therapy. PLoS ONE, 5, e11841
    • (2010) PLoS ONE , vol.5 , pp. e11841
    • Bloemendaal, A.1    Brouwer, E.C.2    Fluit, A.C.3
  • 16
    • 66249122803 scopus 로고    scopus 로고
    • Inferring stabilizing mutations from protein phylogenies: Application to influenza hemagglutinin
    • Bloom JD, Glassman MJ, (2009) Inferring stabilizing mutations from protein phylogenies: application to influenza hemagglutinin. PLoS Computational Biology, 5, e1000349
    • (2009) PLoS Computational Biology , vol.5 , pp. e1000349
    • Bloom, J.D.1    Glassman, M.J.2
  • 17
    • 77953262416 scopus 로고    scopus 로고
    • Permissive secondary mutations enable the evolution of influenza oseltamivir resistance
    • Bloom JD, Gong LI, Baltimore D, (2010) Permissive secondary mutations enable the evolution of influenza oseltamivir resistance. Science, 328, 1272-1275
    • (2010) Science , vol.328 , pp. 1272-1275
    • Bloom, J.D.1    Gong, L.I.2    Baltimore, D.3
  • 18
    • 43249110221 scopus 로고    scopus 로고
    • Homologous recombination is very rare or absent in human influenza A virus
    • Boni MF, Zhou Y, Taubenberger JK, Holmes EC, (2008) Homologous recombination is very rare or absent in human influenza A virus. Journal of Virology, 82, 4807-4811
    • (2008) Journal of Virology , vol.82 , pp. 4807-4811
    • Boni, M.F.1    Zhou, Y.2    Taubenberger, J.K.3    Holmes, E.C.4
  • 19
    • 84881483492 scopus 로고    scopus 로고
    • Evolutionary dynamics of cancer in response to targeted combination therapy
    • Bozic I, Reiter JG, Allen B, et al. (2013) Evolutionary dynamics of cancer in response to targeted combination therapy. ELife, 2, e00747
    • (2013) ELife , vol.2 , pp. e00747
    • Bozic, I.1    Reiter, J.G.2    Allen, B.3
  • 20
    • 0029036829 scopus 로고
    • The hitchhiking effect on the site frequency spectrum of DNA polymorphisms
    • Braverman JM, Hudson RR, Kaplan NL, Langley CH, Stephan W, (1995) The hitchhiking effect on the site frequency spectrum of DNA polymorphisms. Genetics, 140, 783-796
    • (1995) Genetics , vol.140 , pp. 783-796
    • Braverman, J.M.1    Hudson, R.R.2    Kaplan, N.L.3    Langley, C.H.4    Stephan, W.5
  • 21
    • 84931291762 scopus 로고    scopus 로고
    • Drug resistance of clinical varicella-zoster virus strains confirmed by recombinant thymidine kinase expression and by targeted resistance mutagenesis of a cloned wild-type isolate
    • Brunnemann AK, Bohn-Wippert K, Zell R, et al. (2015) Drug resistance of clinical varicella-zoster virus strains confirmed by recombinant thymidine kinase expression and by targeted resistance mutagenesis of a cloned wild-type isolate. Antimicrobial Agents and Chemotherapy, 59, 2726-2734
    • (2015) Antimicrobial Agents and Chemotherapy , vol.59 , pp. 2726-2734
    • Brunnemann, A.K.1    Bohn-Wippert, K.2    Zell, R.3
  • 22
    • 80053439798 scopus 로고    scopus 로고
    • Sequential bottlenecks drive viral evolution in early acute hepatitis C virus infection
    • Bull RA, Luciani F, McElroy K, et al. (2011) Sequential bottlenecks drive viral evolution in early acute hepatitis C virus infection. PLoS Pathogens, 7, e1002243
    • (2011) PLoS Pathogens , vol.7 , pp. e1002243
    • Bull, R.A.1    Luciani, F.2    McElroy, K.3
  • 23
    • 84884224664 scopus 로고    scopus 로고
    • CDC. (accessed 26 May 2015)
    • CDC (2011) Antimicrobial resistance posing growing health threat. Available from http://www.cdc.gov/media/releases/2011/p0407-antimicrobialresistance.html (accessed 26 May 2015)
    • (2011) Antimicrobial Resistance Posing Growing Health Threat
  • 24
    • 69249083586 scopus 로고    scopus 로고
    • Waves of resistance: Staphylococcus aureus in the antibiotic era
    • Chambers HF, DeLeo FR, (2009) Waves of resistance: Staphylococcus aureus in the antibiotic era. Nature Reviews Microbiology, 7, 629-641
    • (2009) Nature Reviews Microbiology , vol.7 , pp. 629-641
    • Chambers, H.F.1    DeLeo, F.R.2
  • 25
    • 84859506329 scopus 로고    scopus 로고
    • A major genome region underlying artemisinin resistance in malaria
    • Cheeseman IH, Miller BA, Nair S, et al. (2012) A major genome region underlying artemisinin resistance in malaria. Science, 336, 79-82
    • (2012) Science , vol.336 , pp. 79-82
    • Cheeseman, I.H.1    Miller, B.A.2    Nair, S.3
  • 26
    • 84988299737 scopus 로고    scopus 로고
    • Pooled sequencing and rare variant association tests for identifying the determinants of emerging drug resistance in malaria parasites
    • Cheeseman IH, McDew-White M, Phyo AP, Sriprawat K, Nosten F, Anderson TJ, (2015) Pooled sequencing and rare variant association tests for identifying the determinants of emerging drug resistance in malaria parasites. Molecular Biology and Evolution, 32, 1080-1090
    • (2015) Molecular Biology and Evolution , vol.32 , pp. 1080-1090
    • Cheeseman, I.H.1    McDew-White, M.2    Phyo, A.P.3    Sriprawat, K.4    Nosten, F.5    Anderson, T.J.6
  • 27
    • 77957853671 scopus 로고    scopus 로고
    • Complete genome sequence of Staphylococcus aureus strain JKD6159, a unique Australian clone of ST93-IV community methicillin-resistant Staphylococcus aureus
    • Chua K, Seemann T, Harrison PF, et al. (2010) Complete genome sequence of Staphylococcus aureus strain JKD6159, a unique Australian clone of ST93-IV community methicillin-resistant Staphylococcus aureus. Journal of Bacteriology, 192, 5556-5557
    • (2010) Journal of Bacteriology , vol.192 , pp. 5556-5557
    • Chua, K.1    Seemann, T.2    Harrison, P.F.3
  • 28
    • 80053450540 scopus 로고    scopus 로고
    • The dominant Australian community-acquired methicillin-resistant Staphylococcus aureus clone ST93-IV [2B] is highly virulent and genetically distinct
    • Chua KYL, Seemann T, Harrison PF, et al. (2011) The dominant Australian community-acquired methicillin-resistant Staphylococcus aureus clone ST93-IV [2B] is highly virulent and genetically distinct. PLoS ONE, 6, e25887
    • (2011) PLoS ONE , vol.6 , pp. e25887
    • Chua, K.Y.L.1    Seemann, T.2    Harrison, P.F.3
  • 30
    • 84919667206 scopus 로고    scopus 로고
    • Generation of antigenic diversity in Plasmodium falciparum by structured rearrangement of var genes during mitosis
    • Claessens A, Hamilton WL, Kekre M, et al. (2014) Generation of antigenic diversity in Plasmodium falciparum by structured rearrangement of var genes during mitosis. PLoS Genetics, 10, e1004812
    • (2014) PLoS Genetics , vol.10 , pp. e1004812
    • Claessens, A.1    Hamilton, W.L.2    Kekre, M.3
  • 31
    • 79955943288 scopus 로고    scopus 로고
    • Added value of deep sequencing relative to population sequencing in heavily pre-treated HIV-1-infected subjects
    • Codoñer FM, Pou C, Thielen A, et al. (2011) Added value of deep sequencing relative to population sequencing in heavily pre-treated HIV-1-infected subjects. PLoS ONE, 6, e19461
    • (2011) PLoS ONE , vol.6 , pp. e19461
    • Codoñer, F.M.1    Pou, C.2    Thielen, A.3
  • 32
    • 0028952146 scopus 로고
    • HIV population dynamics in vivo: Implications for genetic variation, pathogenesis, and therapy
    • Coffin JM, (1995) HIV population dynamics in vivo: implications for genetic variation, pathogenesis, and therapy. Science, 267, 483-489
    • (1995) Science , vol.267 , pp. 483-489
    • Coffin, J.M.1
  • 33
    • 0032508046 scopus 로고    scopus 로고
    • Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence
    • Cole ST, Brosch R, Parkhill J, et al. (1998) Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence. Nature, 393, 537-544
    • (1998) Nature , vol.393 , pp. 537-544
    • Cole, S.T.1    Brosch, R.2    Parkhill, J.3
  • 34
    • 70350028211 scopus 로고    scopus 로고
    • Structural basis for oseltamivir resistance of influenza viruses
    • Collins P, Haire L, Lin Y, et al. (2009) Structural basis for oseltamivir resistance of influenza viruses. Vaccine, 27, 6317-6323
    • (2009) Vaccine , vol.27 , pp. 6317-6323
    • Collins, P.1    Haire, L.2    Lin, Y.3
  • 35
    • 84868143643 scopus 로고    scopus 로고
    • The many landscapes of recombination in Drosophila melanogaster
    • Comeron JM, Ratnappan R, Bailin S, (2012) The many landscapes of recombination in Drosophila melanogaster. PLoS Genetics, 8, e1002905
    • (2012) PLoS Genetics , vol.8 , pp. e1002905
    • Comeron, J.M.1    Ratnappan, R.2    Bailin, S.3
  • 36
    • 80053175280 scopus 로고    scopus 로고
    • Evolution and diversity of community-associated methicillin-resistant Staphylococcus aureus in a geographical region
    • Coombs GW, Monecke S, Pearson JC, et al. (2011) Evolution and diversity of community-associated methicillin-resistant Staphylococcus aureus in a geographical region. BMC Microbiology, 11, 215
    • (2011) BMC Microbiology , vol.11 , pp. 215
    • Coombs, G.W.1    Monecke, S.2    Pearson, J.C.3
  • 37
    • 0035859931 scopus 로고    scopus 로고
    • The evolution of methicillin resistance in Staphylococcus aureus: Similarity of genetic backgrounds in historically early methicillin-susceptible and -resistant isolates and contemporary epidemic clones
    • Crisõstomo MI, Westh H, Tomasz A, Chung M, Oliveira DC, de Lencastre H, (2001) The evolution of methicillin resistance in Staphylococcus aureus: similarity of genetic backgrounds in historically early methicillin-susceptible and -resistant isolates and contemporary epidemic clones. Proceedings of the National Academy of Sciences of the USA, 98, 9865-9870
    • (2001) Proceedings of the National Academy of Sciences of the USA , vol.98 , pp. 9865-9870
    • Crisõstomo, M.I.1    Westh, H.2    Tomasz, A.3    Chung, M.4    Oliveira, D.C.5    De Lencastre, H.6
  • 38
    • 0035695023 scopus 로고    scopus 로고
    • Recombination at double-strand breaks and DNA ends: Conserved mechanisms from phage to humans
    • Cromie GA, Connelly JC, Leach DRF, (2001) Recombination at double-strand breaks and DNA ends: conserved mechanisms from phage to humans. Molecular Cell, 8, 1163-1174
    • (2001) Molecular Cell , vol.8 , pp. 1163-1174
    • Cromie, G.A.1    Connelly, J.C.2    Leach, D.R.F.3
  • 39
    • 84923323708 scopus 로고    scopus 로고
    • Evidence for soft selective sweeps in the evolution of pneumococcal multidrug resistance and vaccine escape
    • Croucher NJ, Chewapreecha C, Hanage WP, et al. (2014) Evidence for soft selective sweeps in the evolution of pneumococcal multidrug resistance and vaccine escape. Genome Biology and Evolution, 6, 1589-1602
    • (2014) Genome Biology and Evolution , vol.6 , pp. 1589-1602
    • Croucher, N.J.1    Chewapreecha, C.2    Hanage, W.P.3
  • 40
    • 58749093735 scopus 로고    scopus 로고
    • Modeling the invasion of community acquired methicillin-resistant Staphylococcus aureus into hospitals
    • D'Agata EMC, Webb GF, Horn MA, Moellering RC, Ruan S, (2009) Modeling the invasion of community acquired methicillin-resistant Staphylococcus aureus into hospitals. Clinical Infectious Diseases, 48, 274-284
    • (2009) Clinical Infectious Diseases , vol.48 , pp. 274-284
    • D'Agata, E.M.C.1    Webb, G.F.2    Horn, M.A.3    Moellering, R.C.4    Ruan, S.5
  • 41
    • 58749091289 scopus 로고    scopus 로고
    • Two-months-off, four-months-on antiretroviral regimen increases the risk of resistance, compared with continuous therapy: A randomized trial involving West African adults
    • Danel C, Moh R, Chaix ML, et al. (2009) Two-months-off, four-months-on antiretroviral regimen increases the risk of resistance, compared with continuous therapy: a randomized trial involving West African adults. The Journal of Infectious Diseases, 199, 66-76
    • (2009) The Journal of Infectious Diseases , vol.199 , pp. 66-76
    • Danel, C.1    Moh, R.2    Chaix, M.L.3
  • 42
    • 77954586271 scopus 로고    scopus 로고
    • Community-associated methicillin-resistant Staphylococcus aureus: Epidemiology and clinical consequences of an emerging epidemic
    • David MZ, Daum RS, (2010) Community-associated methicillin-resistant Staphylococcus aureus: epidemiology and clinical consequences of an emerging epidemic. Clinical Microbiology Reviews, 23, 616-687
    • (2010) Clinical Microbiology Reviews , vol.23 , pp. 616-687
    • David, M.Z.1    Daum, R.S.2
  • 43
    • 79953191111 scopus 로고    scopus 로고
    • Clinical impact of antimicrobial resistance in European hospitals: Excess mortality and length of hospital stay related to methicillin-resistant Staphylococcus aureus bloodstream infections
    • De Kraker MEA, Wolkewitz M, Davey PG, Grundmann H, (2011) Clinical impact of antimicrobial resistance in European hospitals: excess mortality and length of hospital stay related to methicillin-resistant Staphylococcus aureus bloodstream infections. Antimicrobial Agents and Chemotherapy, 55, 1598-1605
    • (2011) Antimicrobial Agents and Chemotherapy , vol.55 , pp. 1598-1605
    • De Kraker, M.E.A.1    Wolkewitz, M.2    Davey, P.G.3    Grundmann, H.4
  • 44
    • 33847314378 scopus 로고    scopus 로고
    • Beneficial mutation selection balance and the effect of linkage on positive selection
    • Desai MM, Fisher DS, (2007) Beneficial mutation selection balance and the effect of linkage on positive selection. Genetics, 176, 1759-1798
    • (2007) Genetics , vol.176 , pp. 1759-1798
    • Desai, M.M.1    Fisher, D.S.2
  • 45
    • 43949146900 scopus 로고    scopus 로고
    • The arginine catabolic mobile element and staphylococcal chromosomal cassette mec linkage: Convergence of virulence and resistance in the USA300 clone of methicillin-resistant Staphylococcus aureus
    • Diep BA, Stone GG, Basuino L, et al. (2008) The arginine catabolic mobile element and staphylococcal chromosomal cassette mec linkage: convergence of virulence and resistance in the USA300 clone of methicillin-resistant Staphylococcus aureus. The Journal of Infectious Diseases, 197, 1523-1530
    • (2008) The Journal of Infectious Diseases , vol.197 , pp. 1523-1530
    • Diep, B.A.1    Stone, G.G.2    Basuino, L.3
  • 46
    • 84862776906 scopus 로고    scopus 로고
    • Clonal evolution in relapsed acute myeloid leukaemia revealed by whole-genome sequencing
    • Ding L, Ley TJ, Larson DE, et al. (2012) Clonal evolution in relapsed acute myeloid leukaemia revealed by whole-genome sequencing. Nature, 481, 506-510
    • (2012) Nature , vol.481 , pp. 506-510
    • Ding, L.1    Ley, T.J.2    Larson, D.E.3
  • 48
    • 77949568358 scopus 로고    scopus 로고
    • Artemisinin resistance: Current status and scenarios for containment
    • Dondorp AM, Yeung S, White L, et al. (2010) Artemisinin resistance: current status and scenarios for containment. Nature Reviews Microbiology, 8, 272-280
    • (2010) Nature Reviews Microbiology , vol.8 , pp. 272-280
    • Dondorp, A.M.1    Yeung, S.2    White, L.3
  • 49
    • 84886298744 scopus 로고    scopus 로고
    • Selection biases the prevalence and type of epistasis along adaptive trajectories
    • Draghi JA, Plotkin JB, (2013) Selection biases the prevalence and type of epistasis along adaptive trajectories. Evolution, 67, 3120-3131
    • (2013) Evolution , vol.67 , pp. 3120-3131
    • Draghi, J.A.1    Plotkin, J.B.2
  • 50
    • 79955377903 scopus 로고    scopus 로고
    • Epistasis increases the rate of conditionally neutral substitution in an adapting population
    • Draghi JA, Parsons TL, Plotkin JB, (2011) Epistasis increases the rate of conditionally neutral substitution in an adapting population. Genetics, 187, 1139-1152
    • (2011) Genetics , vol.187 , pp. 1139-1152
    • Draghi, J.A.1    Parsons, T.L.2    Plotkin, J.B.3
  • 51
    • 84965189781 scopus 로고    scopus 로고
    • Evolution of extensively drug-resistant Mycobacterium tuberculosis from a susceptible ancestor in a single patient
    • Eldholm V, Norheim G, von der Lippe B, et al. (2014) Evolution of extensively drug-resistant Mycobacterium tuberculosis from a susceptible ancestor in a single patient. Genome Biology, 15, 490
    • (2014) Genome Biology , vol.15 , pp. 490
    • Eldholm, V.1    Norheim, G.2    Von Der Lippe, B.3
  • 52
    • 0034005677 scopus 로고    scopus 로고
    • Multilocus sequence typing for characterization of methicillin-resistant and methicillin-susceptible clones of Staphylococcus aureus
    • Enright M, Day N, (2000) Multilocus sequence typing for characterization of methicillin-resistant and methicillin-susceptible clones of Staphylococcus aureus. Journal of Clinical Microbiology, 38, 1008-1015
    • (2000) Journal of Clinical Microbiology , vol.38 , pp. 1008-1015
    • Enright, M.1    Day, N.2
  • 54
    • 0033911640 scopus 로고    scopus 로고
    • Hitchhiking under positive Darwinian selection
    • Fay JC, Wu CI, (2000) Hitchhiking under positive Darwinian selection. Genetics, 155, 1405-1413
    • (2000) Genetics , vol.155 , pp. 1405-1413
    • Fay, J.C.1    Wu, C.I.2
  • 55
    • 0037186608 scopus 로고    scopus 로고
    • Testing the neutral theory of molecular evolution with genomic data from Drosophila
    • Fay JC, Wyckoff GJ, Wu CI, (2002) Testing the neutral theory of molecular evolution with genomic data from Drosophila. Nature, 415, 1024-1026
    • (2002) Nature , vol.415 , pp. 1024-1026
    • Fay, J.C.1    Wyckoff, G.J.2    Wu, C.I.3
  • 56
    • 84954077854 scopus 로고    scopus 로고
    • More efficacious drugs lead to harder selective sweeps in the evolution of drug resistance in HIV-1
    • Feder AF, Rhee SY, Shafer RW, Petrov DA, Pennings PS, (2015) More efficacious drugs lead to harder selective sweeps in the evolution of drug resistance in HIV-1. BioRxiv, 024109
    • (2015) BioRxiv , pp. 024109
    • Feder, A.F.1    Rhee, S.Y.2    Shafer, R.W.3    Petrov, D.A.4    Pennings, P.S.5
  • 57
    • 2942555285 scopus 로고    scopus 로고
    • Analyses of clonality and the evolution of bacterial pathogens
    • Feil EJ, Enright MC, (2004) Analyses of clonality and the evolution of bacterial pathogens. Current Opinion in Microbiology, 7, 308-313
    • (2004) Current Opinion in Microbiology , vol.7 , pp. 308-313
    • Feil, E.J.1    Enright, M.C.2
  • 58
    • 1342304133 scopus 로고    scopus 로고
    • EBURST: Inferring patterns of evolutionary descent among clusters of related bacterial genotypes from multilocus sequence typing data
    • Feil EJ, Li BC, Aanensen DM, Hanage WP, Spratt BG, (2004) eBURST: inferring patterns of evolutionary descent among clusters of related bacterial genotypes from multilocus sequence typing data. Journal of Bacteriology, 186, 1518-1530
    • (2004) Journal of Bacteriology , vol.186 , pp. 1518-1530
    • Feil, E.J.1    Li, B.C.2    Aanensen, D.M.3    Hanage, W.P.4    Spratt, B.G.5
  • 59
    • 0016110957 scopus 로고
    • The evolutionary advantage of recombination
    • Felsenstein J, (1974) The evolutionary advantage of recombination. Genetics, 78, 737-756
    • (1974) Genetics , vol.78 , pp. 737-756
    • Felsenstein, J.1
  • 60
    • 3142772962 scopus 로고    scopus 로고
    • Dissecting the loci of low-level quinine resistance in malaria parasites
    • Ferdig MT, Cooper RA, Mu J, et al. (2004) Dissecting the loci of low-level quinine resistance in malaria parasites. Molecular Microbiology, 52, 985-997
    • (2004) Molecular Microbiology , vol.52 , pp. 985-997
    • Ferdig, M.T.1    Cooper, R.A.2    Mu, J.3
  • 64
    • 84901729595 scopus 로고    scopus 로고
    • Influenza virus drug resistance: A time-sampled population genetics perspective
    • Foll M, Poh YP, Renzette N, et al. (2014) Influenza virus drug resistance: a time-sampled population genetics perspective. PLoS Genetics, 10, e1004185
    • (2014) PLoS Genetics , vol.10 , pp. e1004185
    • Foll, M.1    Poh, Y.P.2    Renzette, N.3
  • 65
    • 84924411185 scopus 로고    scopus 로고
    • Recent selective sweeps in North American Drosophila melanogaster show signatures of soft sweeps
    • Garud NR, Messer PW, Buzbas EO, Petrov DA, (2015) Recent selective sweeps in North American Drosophila melanogaster show signatures of soft sweeps. PLoS Genetics, 11, e1005004
    • (2015) PLoS Genetics , vol.11 , pp. e1005004
    • Garud, N.R.1    Messer, P.W.2    Buzbas, E.O.3    Petrov, D.A.4
  • 66
    • 2542583245 scopus 로고    scopus 로고
    • The fate of competing beneficial mutations in an asexual population
    • Gerrish PJ, Lenski RE, (1998) The fate of competing beneficial mutations in an asexual population. Genetica, 102, 127-144
    • (1998) Genetica , vol.102 , pp. 127-144
    • Gerrish, P.J.1    Lenski, R.E.2
  • 68
    • 84855949218 scopus 로고    scopus 로고
    • Amino acid changes in hemagglutinin contribute to the replication of oseltamivir-resistant H1N1 influenza viruses
    • Ginting TE, Shinya K, Kyan Y, et al. (2012) Amino acid changes in hemagglutinin contribute to the replication of oseltamivir-resistant H1N1 influenza viruses. Journal of Virology, 86, 121-127
    • (2012) Journal of Virology , vol.86 , pp. 121-127
    • Ginting, T.E.1    Shinya, K.2    Kyan, Y.3
  • 69
    • 84901627198 scopus 로고    scopus 로고
    • Epistatically interacting substitutions are enriched during adaptive protein evolution
    • Gong LI, Bloom JD, (2014) Epistatically interacting substitutions are enriched during adaptive protein evolution. PLoS Genetics, 10, e1004328
    • (2014) PLoS Genetics , vol.10 , pp. e1004328
    • Gong, L.I.1    Bloom, J.D.2
  • 70
    • 84879064073 scopus 로고    scopus 로고
    • Stability-mediated epistasis constrains the evolution of an influenza protein
    • Gong LI, Suchard MA, Bloom JD, (2013) Stability-mediated epistasis constrains the evolution of an influenza protein. ELife, 2, e00631
    • (2013) ELife , vol.2 , pp. e00631
    • Gong, L.I.1    Suchard, M.A.2    Bloom, J.D.3
  • 71
    • 84908632102 scopus 로고    scopus 로고
    • Deleterious passengers in adapting populations
    • Good BH, Desai MM, (2014) Deleterious passengers in adapting populations. Genetics, 198, 1183-1208
    • (2014) Genetics , vol.198 , pp. 1183-1208
    • Good, B.H.1    Desai, M.M.2
  • 72
    • 0346373759 scopus 로고    scopus 로고
    • Unifying the epidemiological and evolutionary dynamics of pathogens
    • Grenfell BT, Pybus OG, Gog JR, et al. (2004) Unifying the epidemiological and evolutionary dynamics of pathogens. Science, 303, 327-332
    • (2004) Science , vol.303 , pp. 327-332
    • Grenfell, B.T.1    Pybus, O.G.2    Gog, J.R.3
  • 73
    • 77950806408 scopus 로고    scopus 로고
    • New algorithms and methods to estimate maximum-likelihood phylogenies: Assessing the performance of phyml 3.0
    • Guindon S, Dufayard JF, Lefort V, Anisimova M, Hordijk W, Gascuel O, (2010) New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of phyml 3.0. Systematic Biology, 59, 307-321
    • (2010) Systematic Biology , vol.59 , pp. 307-321
    • Guindon, S.1    Dufayard, J.F.2    Lefort, V.3    Anisimova, M.4    Hordijk, W.5    Gascuel, O.6
  • 76
    • 0346731288 scopus 로고    scopus 로고
    • Local variants of staphylococcal cassette chromosome mec in sporadic methicillin-resistant Staphylococcus aureus and methicillin-resistant coagulase-negative staphylococci: Evidence of horizontal gene transfer?
    • Hanssen AM, Kjeldsen G, Sollid JUE, (2004) Local variants of staphylococcal cassette chromosome mec in sporadic methicillin-resistant Staphylococcus aureus and methicillin-resistant coagulase-negative staphylococci: evidence of horizontal gene transfer? Antimicrobial Agents and Chemotherapy, 48, 285-296
    • (2004) Antimicrobial Agents and Chemotherapy , vol.48 , pp. 285-296
    • Hanssen, A.M.1    Kjeldsen, G.2    Sollid, J.U.E.3
  • 77
    • 18544381751 scopus 로고    scopus 로고
    • Dissemination of community-acquired methicillin-resistant Staphylococcus aureus clones in northern Norway: Sequence types 8 and 80 predominate
    • Hanssen AM, Fossum A, Mikalsen J, Halvorsen DS, Bukholm G, Sollid JUE, (2005) Dissemination of community-acquired methicillin-resistant Staphylococcus aureus clones in northern Norway: sequence types 8 and 80 predominate. Journal of Clinical Microbiology, 43, 2118-2124
    • (2005) Journal of Clinical Microbiology , vol.43 , pp. 2118-2124
    • Hanssen, A.M.1    Fossum, A.2    Mikalsen, J.3    Halvorsen, D.S.4    Bukholm, G.5    Sollid, J.U.E.6
  • 78
    • 84872515273 scopus 로고    scopus 로고
    • Whole-genome sequencing for analysis of an outbreak of meticillin-resistant Staphylococcus aureus: A descriptive study
    • Harris SR, Cartwright EJP, Török ME, et al. (2013) Whole-genome sequencing for analysis of an outbreak of meticillin-resistant Staphylococcus aureus: a descriptive study. The Lancet Infectious Diseases, 13, 130-136
    • (2013) The Lancet Infectious Diseases , vol.13 , pp. 130-136
    • Harris, S.R.1    Cartwright, E.J.P.2    Török, M.E.3
  • 79
    • 79952050801 scopus 로고    scopus 로고
    • Influenza A virus hemagglutinin antibody escape promotes neuraminidase antigenic variation and drug resistance
    • Hensley SE, Das SR, Gibbs JS, et al. (2011) Influenza A virus hemagglutinin antibody escape promotes neuraminidase antigenic variation and drug resistance. PLoS ONE, 6, e15190
    • (2011) PLoS ONE , vol.6 , pp. e15190
    • Hensley, S.E.1    Das, S.R.2    Gibbs, J.S.3
  • 80
    • 6944227719 scopus 로고    scopus 로고
    • Influenza viruses resistant to the antiviral drug oseltamivir: Transmission studies in ferrets
    • Herlocher ML, Truscon R, Elias S, et al. (2004) Influenza viruses resistant to the antiviral drug oseltamivir: transmission studies in ferrets. Journal of Infectious Diseases, 190, 1627-1630
    • (2004) Journal of Infectious Diseases , vol.190 , pp. 1627-1630
    • Herlocher, M.L.1    Truscon, R.2    Elias, S.3
  • 81
    • 18844439645 scopus 로고    scopus 로고
    • Soft sweeps: Molecular population genetics of adaptation from standing genetic variation
    • Hermisson J, Pennings PS, (2005) Soft sweeps: molecular population genetics of adaptation from standing genetic variation. Genetics, 169, 2335-2352
    • (2005) Genetics , vol.169 , pp. 2335-2352
    • Hermisson, J.1    Pennings, P.S.2
  • 82
    • 0013979181 scopus 로고
    • The effect of linkage on limits to artificial selection
    • Hill WG, Robertson A, (1966) The effect of linkage on limits to artificial selection. Genetical Research, 8, 269
    • (1966) Genetical Research , vol.8 , pp. 269
    • Hill, W.G.1    Robertson, A.2
  • 83
    • 79955423458 scopus 로고    scopus 로고
    • A systems analysis of mutational effects in HIV-1 protease and reverse transcriptase
    • Hinkley T, Martins J, Chappey C, et al. (2011) A systems analysis of mutational effects in HIV-1 protease and reverse transcriptase. Nature Genetics, 43, 487-489
    • (2011) Nature Genetics , vol.43 , pp. 487-489
    • Hinkley, T.1    Martins, J.2    Chappey, C.3
  • 84
    • 46349112103 scopus 로고    scopus 로고
    • Antiretroviral drug resistance testing in adult HIV-1 infection: 2008 recommendations of an international AIDS society-USA panel
    • Hirsch MS, Günthard HF, Schapiro JM, et al. (2008) Antiretroviral drug resistance testing in adult HIV-1 infection: 2008 recommendations of an international aids society-USA panel. Clinical Infectious Diseases, 47, 266-285
    • (2008) Clinical Infectious Diseases , vol.47 , pp. 266-285
    • Hirsch, M.S.1    Günthard, H.F.2    Schapiro, J.M.3
  • 85
    • 84875741847 scopus 로고    scopus 로고
    • A genomic portrait of the emergence, evolution, and global spread of a methicillin-resistant Staphylococcus aureus pandemic
    • Holden MTG, Hsu LY, Kurt K, et al. (2013) A genomic portrait of the emergence, evolution, and global spread of a methicillin-resistant Staphylococcus aureus pandemic. Genome Research, 23, 653-664
    • (2013) Genome Research , vol.23 , pp. 653-664
    • Holden, M.T.G.1    Hsu, L.Y.2    Kurt, K.3
  • 86
    • 24944468625 scopus 로고    scopus 로고
    • Whole-genome analysis of human influenza a virus reveals multiple persistent lineages and reassortment among recent H3N2 viruses
    • Holmes EC, Ghedin E, Miller N, et al. (2005) Whole-genome analysis of human influenza a virus reveals multiple persistent lineages and reassortment among recent H3N2 viruses. PLoS Biology, 3, 1579
    • (2005) PLoS Biology , vol.3 , pp. 1579
    • Holmes, E.C.1    Ghedin, E.2    Miller, N.3
  • 87
    • 54049146958 scopus 로고    scopus 로고
    • Genomic analysis reveals a point mutation in the two-component sensor gene graS that leads to intermediate vancomycin resistance in clinical Staphylococcus aureus
    • Howden BP, Stinear TP, Allen DL, Johnson PDR, Ward PB, Davies JK, (2008) Genomic analysis reveals a point mutation in the two-component sensor gene graS that leads to intermediate vancomycin resistance in clinical Staphylococcus aureus. Antimicrobial Agents and Chemotherapy, 52, 3755-3762
    • (2008) Antimicrobial Agents and Chemotherapy , vol.52 , pp. 3755-3762
    • Howden, B.P.1    Stinear, T.P.2    Allen, D.L.3    Johnson, P.D.R.4    Ward, P.B.5    Davies, J.K.6
  • 88
    • 84939156743 scopus 로고    scopus 로고
    • Evolutionary dynamics of methicillin-resistant Staphylococcus aureus within a healthcare system
    • Hsu LY, Harris SR, Chlebowicz MA, et al. (2015) Evolutionary dynamics of methicillin-resistant Staphylococcus aureus within a healthcare system. Genome Biology, 16, 1-13
    • (2015) Genome Biology , vol.16 , pp. 1-13
    • Hsu, L.Y.1    Harris, S.R.2    Chlebowicz, M.A.3
  • 89
    • 26844494887 scopus 로고    scopus 로고
    • Drug-resistant malaria
    • Hyde JE, (2005) Drug-resistant malaria. Trends in Parasitology, 21, 494-498
    • (2005) Trends in Parasitology , vol.21 , pp. 494-498
    • Hyde, J.E.1
  • 90
    • 0036294323 scopus 로고    scopus 로고
    • The H274Y mutation in the influenza A/H1N1 neuraminidase active site following oseltamivir phosphate treatment leave virus severely compromised both in vitro and in vivo
    • Ives J, Carr J, Mendel D, et al. (2002) The H274Y mutation in the influenza A/H1N1 neuraminidase active site following oseltamivir phosphate treatment leave virus severely compromised both in vitro and in vivo. Antiviral Research, 55, 307-317
    • (2002) Antiviral Research , vol.55 , pp. 307-317
    • Ives, J.1    Carr, J.2    Mendel, D.3
  • 91
    • 84954077043 scopus 로고    scopus 로고
    • IWG-SCC. (accessed 26 May 2015)
    • IWG-SCC (2015) Scc classification. Available from http://www.sccmec.org/Pages/SCC-ClassificationEN.html (accessed 26 May 2015)
    • (2015) Scc Classification
  • 92
    • 1842717957 scopus 로고    scopus 로고
    • Comparative recombination rates in the rat, mouse, and human genomes
    • Jensen-Seaman MI, Furey TS, Payseur BA, et al. (2004) Comparative recombination rates in the rat, mouse, and human genomes. Genome Research, 14, 528-538
    • (2004) Genome Research , vol.14 , pp. 528-538
    • Jensen-Seaman, M.I.1    Furey, T.S.2    Payseur, B.A.3
  • 93
    • 79953261109 scopus 로고    scopus 로고
    • High recombination rates and hotspots in a Plasmodium falciparum genetic cross
    • Jiang H, Li N, Gopalan V, et al. (2011) High recombination rates and hotspots in a Plasmodium falciparum genetic cross. Genome Biology, 12, R33
    • (2011) Genome Biology , vol.12 , pp. R33
    • Jiang, H.1    Li, N.2    Gopalan, V.3
  • 94
    • 84883239661 scopus 로고    scopus 로고
    • Ggmap: Spatial visualization with ggplot2
    • Kahle D, Wickham H, (2013) ggmap: Spatial visualization with ggplot2. The R Journal, 5, 144-161
    • (2013) The R Journal , vol.5 , pp. 144-161
    • Kahle, D.1    Wickham, H.2
  • 95
    • 45149105926 scopus 로고    scopus 로고
    • Efficient control of population structure in model organism association mapping
    • Kang HM, Zaitlen NA, Wade CM, et al. (2008) Efficient control of population structure in model organism association mapping. Genetics, 178, 1709-1723
    • (2008) Genetics , vol.178 , pp. 1709-1723
    • Kang, H.M.1    Zaitlen, N.A.2    Wade, C.M.3
  • 97
    • 0034038098 scopus 로고    scopus 로고
    • A new class of genetic element, Staphylococcus cassette chromosome mec, encodes methicillin resistance in Staphylococcus aureus
    • Katayama Y, Ito T, Hiramatsu K, (2000) A new class of genetic element, Staphylococcus cassette chromosome mec, encodes methicillin resistance in Staphylococcus aureus. Antimicrobial Agents and Chemotherapy, 44, 1549-1555
    • (2000) Antimicrobial Agents and Chemotherapy , vol.44 , pp. 1549-1555
    • Katayama, Y.1    Ito, T.2    Hiramatsu, K.3
  • 98
    • 47649104484 scopus 로고    scopus 로고
    • Horizontal gene transfer in eukaryotic evolution
    • Keeling PJ, Palmer JD, (2008) Horizontal gene transfer in eukaryotic evolution. Nature Reviews Genetics, 9, 605-618
    • (2008) Nature Reviews Genetics , vol.9 , pp. 605-618
    • Keeling, P.J.1    Palmer, J.D.2
  • 99
    • 0036189827 scopus 로고    scopus 로고
    • Detecting a local signature of genetic hitchhiking along a recombining chromosome
    • Kim Y, Stephan W, (2002) Detecting a local signature of genetic hitchhiking along a recombining chromosome. Genetics, 160, 765-777
    • (2002) Genetics , vol.160 , pp. 765-777
    • Kim, Y.1    Stephan, W.2
  • 100
    • 33845879635 scopus 로고    scopus 로고
    • Epochal evolution shapes the phylodynamics of interpandemic influenza A (H3N2) in humans
    • Koelle K, Cobey S, Grenfell B, Pascual M, (2006) Epochal evolution shapes the phylodynamics of interpandemic influenza A (H3N2) in humans. Science, 314, 1898-1903
    • (2006) Science , vol.314 , pp. 1898-1903
    • Koelle, K.1    Cobey, S.2    Grenfell, B.3    Pascual, M.4
  • 101
    • 0027472248 scopus 로고
    • Evidence for a clonal origin of methicillin resistance in Staphylococcus aureus
    • Kreiswirth B, Kornblum J, Arbeit RD, et al. (1993) Evidence for a clonal origin of methicillin resistance in Staphylococcus aureus. Science, 259, 227-230
    • (1993) Science , vol.259 , pp. 227-230
    • Kreiswirth, B.1    Kornblum, J.2    Arbeit, R.D.3
  • 102
    • 79952270576 scopus 로고    scopus 로고
    • Prevalence of epistasis in the evolution of influenza A surface proteins
    • Kryazhimskiy S, Dushoff J, Bazykin GA, Plotkin JB, (2011) Prevalence of epistasis in the evolution of influenza A surface proteins. PLoS Genetics, 7, e1001301
    • (2011) PLoS Genetics , vol.7 , pp. e1001301
    • Kryazhimskiy, S.1    Dushoff, J.2    Bazykin, G.A.3    Plotkin, J.B.4
  • 103
    • 84888213196 scopus 로고    scopus 로고
    • Whole genome, whole population sequencing reveals that loss of signaling networks is the major adaptive strategy in a constant environment
    • Kvitek DJ, Sherlock G, (2013) Whole genome, whole population sequencing reveals that loss of signaling networks is the major adaptive strategy in a constant environment. PLoS Genetics, 9, e1003972
    • (2013) PLoS Genetics , vol.9 , pp. e1003972
    • Kvitek, D.J.1    Sherlock, G.2
  • 104
    • 84874787941 scopus 로고    scopus 로고
    • Reduced susceptibility of Plasmodium falciparum to artesunate in southern Myanmar
    • Kyaw MP, Nyunt MH, Chit K, et al. (2013) Reduced susceptibility of Plasmodium falciparum to artesunate in southern Myanmar. PLoS ONE, 8, e57689
    • (2013) PLoS ONE , vol.8 , pp. e57689
    • Kyaw, M.P.1    Nyunt, M.H.2    Chit, K.3
  • 105
    • 84883132678 scopus 로고    scopus 로고
    • Pervasive genetic hitchhiking and clonal interference in forty evolving yeast populations
    • Lang GI, Rice DP, Hickman MJ, et al. (2013) Pervasive genetic hitchhiking and clonal interference in forty evolving yeast populations. Nature, 500, 571-574
    • (2013) Nature , vol.500 , pp. 571-574
    • Lang, G.I.1    Rice, D.P.2    Hickman, M.J.3
  • 106
    • 84901317078 scopus 로고    scopus 로고
    • Efficacy of initial antiretroviral therapy for HIV-1 infection in adults: A systematic review and meta-analysis of 114 studies with up to 144 weeks' follow-up
    • Lee FJ, Amin J, Carr A, (2014) Efficacy of initial antiretroviral therapy for HIV-1 infection in adults: a systematic review and meta-analysis of 114 studies with up to 144 weeks' follow-up. PLoS ONE, 9, e97482
    • (2014) PLoS ONE , vol.9 , pp. e97482
    • Lee, F.J.1    Amin, J.2    Carr, A.3
  • 107
    • 0015879546 scopus 로고
    • Distribution of gene frequency as a test of the theory of the selective neutrality of polymorphisms
    • Lewontin RC, Krakauer J, (1973) Distribution of gene frequency as a test of the theory of the selective neutrality of polymorphisms. Genetics, 74, 175-195
    • (1973) Genetics , vol.74 , pp. 175-195
    • Lewontin, R.C.1    Krakauer, J.2
  • 108
    • 33751118739 scopus 로고    scopus 로고
    • Staphylococcal chromosome cassette evolution in Staphylococcus aureus inferred from ccr gene complex sequence typing analysis
    • Lina G, Durand G, Berchich C, et al. (2006) Staphylococcal chromosome cassette evolution in Staphylococcus aureus inferred from ccr gene complex sequence typing analysis. Clinical Microbiology and Infection, 12, 1175-1184
    • (2006) Clinical Microbiology and Infection , vol.12 , pp. 1175-1184
    • Lina, G.1    Durand, G.2    Berchich, C.3
  • 109
    • 3342960836 scopus 로고    scopus 로고
    • Staphylococcus aureus: Superbug, super genome?
    • Lindsay JA, Holden MTG, (2004) Staphylococcus aureus: superbug, super genome? Trends in Microbiology, 12, 378-385
    • (2004) Trends in Microbiology , vol.12 , pp. 378-385
    • Lindsay, J.A.1    Holden, M.T.G.2
  • 110
    • 0031914741 scopus 로고    scopus 로고
    • Population dynamics of tuberculosis treatment: Mathematical models of the roles of non-compliance and bacterial heterogeneity in the evolution of drug resistance
    • Lipsitch M, Levin B, (1998) Population dynamics of tuberculosis treatment: mathematical models of the roles of non-compliance and bacterial heterogeneity in the evolution of drug resistance. The International Journal of Tuberculosis and Lung Disease, 2, 187-199
    • (1998) The International Journal of Tuberculosis and Lung Disease , vol.2 , pp. 187-199
    • Lipsitch, M.1    Levin, B.2
  • 111
    • 43949112335 scopus 로고    scopus 로고
    • A population-based study of the incidence and molecular epidemiology of methicillin-resistant Staphylococcus aureus disease in San Francisco, 2004-2005
    • Liu C, Graber CJ, Karr M, et al. (2008) A population-based study of the incidence and molecular epidemiology of methicillin-resistant Staphylococcus aureus disease in San Francisco, 2004-2005. Clinical Infectious Diseases, 46, 1637-1646
    • (2008) Clinical Infectious Diseases , vol.46 , pp. 1637-1646
    • Liu, C.1    Graber, C.J.2    Karr, M.3
  • 113
    • 0038665502 scopus 로고    scopus 로고
    • Antimicrobial resistance: The example of Staphylococcus aureus
    • Lowy F, (2003) Antimicrobial resistance: the example of Staphylococcus aureus. The Journal of Clinical Investigation, 111, 1265-1273
    • (2003) The Journal of Clinical Investigation , vol.111 , pp. 1265-1273
    • Lowy, F.1
  • 114
    • 84895858301 scopus 로고    scopus 로고
    • A predictive fitness model for influenza
    • Luksza M, Lässig M, (2014) A predictive fitness model for influenza. Nature, 507, 57-61
    • (2014) Nature , vol.507 , pp. 57-61
    • Luksza, M.1    Lässig, M.2
  • 116
    • 84884290186 scopus 로고    scopus 로고
    • Europe PMC Funders Group Europe PMC Funders author manuscripts MLST revisited: The gene-by-gene approach to bacterial genomics
    • Maiden MCJ, Rensburg MJJV, Bray JE, et al. (2014) Europe PMC Funders Group Europe PMC Funders author manuscripts MLST revisited: the gene-by-gene approach to bacterial genomics. Nature Reviews Microbiology, 11, 728-736
    • (2014) Nature Reviews Microbiology , vol.11 , pp. 728-736
    • Maiden, M.C.J.1    Rensburg, M.2    Bray, J.E.3
  • 118
    • 33747646240 scopus 로고    scopus 로고
    • Resistance development over 144 weeks in treatment naive patients receiving tenofovir disoproxil fumarate or stavudine with lamivudine and efavirenz in study 903
    • Margot NA, Lu B, Cheng A, Miller MD, (2006) Resistance development over 144 weeks in treatment naive patients receiving tenofovir disoproxil fumarate or stavudine with lamivudine and efavirenz in study 903. HIV Medicine, 7, 442-450
    • (2006) HIV Medicine , vol.7 , pp. 442-450
    • Margot, N.A.1    Lu, B.2    Cheng, A.3    Miller, M.D.4
  • 119
    • 81255175660 scopus 로고    scopus 로고
    • Interfering waves of adaptation promote spatial mixing
    • Martens EA, Hallatschek O, (2011) Interfering waves of adaptation promote spatial mixing. Genetics, 189, 1045-1060
    • (2011) Genetics , vol.189 , pp. 1045-1060
    • Martens, E.A.1    Hallatschek, O.2
  • 120
    • 84873292951 scopus 로고    scopus 로고
    • Bacteriophages of Staphylococcus aureus efficiently package various bacterial genes and mobile genetic elements including SCCmec with different frequencies
    • Maslanova I, Dosskar J, Varga M, et al. (2013) Bacteriophages of Staphylococcus aureus efficiently package various bacterial genes and mobile genetic elements including SCCmec with different frequencies. Environmental Microbiology Reports, 5, 66-73
    • (2013) Environmental Microbiology Reports , vol.5 , pp. 66-73
    • Maslanova, I.1    Dosskar, J.2    Varga, M.3
  • 121
    • 0016220238 scopus 로고
    • The hitch-hiking effect of a favourable gene
    • Maynard Smith J, Haigh J, (1974) The hitch-hiking effect of a favourable gene. Genetical Research, 23, 23-35
    • (1974) Genetical Research , vol.23 , pp. 23-35
    • Maynard Smith, J.1    Haigh, J.2
  • 122
    • 84868097975 scopus 로고    scopus 로고
    • Global epidemiology of community-associated methicillin resistant Staphylococcus aureus (CA-MRSA)
    • Mediavilla JR, Chen L, Mathema B, Kreiswirth BN, (2012) Global epidemiology of community-associated methicillin resistant Staphylococcus aureus (CA-MRSA). Current Opinion in Microbiology, 15, 588-595
    • (2012) Current Opinion in Microbiology , vol.15 , pp. 588-595
    • Mediavilla, J.R.1    Chen, L.2    Mathema, B.3    Kreiswirth, B.N.4
  • 123
    • 84942321996 scopus 로고    scopus 로고
    • Ecological overlap and horizontal gene transfer in Staphylococcus aureus and Staphylococcus epidermidis
    • Meric G, Miragaia M, de Been M, et al. (2015) Ecological overlap and horizontal gene transfer in Staphylococcus aureus and Staphylococcus epidermidis. Genome Biology and Evolution, 7, 1313-1328
    • (2015) Genome Biology and Evolution , vol.7 , pp. 1313-1328
    • Meric, G.1    Miragaia, M.2    De Been, M.3
  • 124
    • 34447565048 scopus 로고    scopus 로고
    • Multiplex PCR strategy for subtyping the staphylococcal cassette chromosome mec type IV in methicillin-resistant Staphylococcus aureus: 'SCCmec IV multiplex
    • Milheiriço C, Oliveira DC, de Lencastre H, (2007) Multiplex PCR strategy for subtyping the staphylococcal cassette chromosome mec type IV in methicillin-resistant Staphylococcus aureus: 'SCCmec IV multiplex '. The Journal of Antimicrobial Chemotherapy, 60, 42-48
    • (2007) The Journal of Antimicrobial Chemotherapy , vol.60 , pp. 42-48
    • Milheiriço, C.1    Oliveira, D.C.2    De Lencastre, H.3
  • 125
    • 84878715473 scopus 로고    scopus 로고
    • Multiple populations of artemisinin-resistant Plasmodium falciparum in Cambodia
    • Miotto O, Almagro-Garcia J, Manske M, et al. (2013) Multiple populations of artemisinin-resistant Plasmodium falciparum in Cambodia. Nature Genetics, 45, 648-655
    • (2013) Nature Genetics , vol.45 , pp. 648-655
    • Miotto, O.1    Almagro-Garcia, J.2    Manske, M.3
  • 126
    • 84924080547 scopus 로고    scopus 로고
    • Genetic architecture of artemisinin-resistant Plasmodium falciparum
    • Miotto O, Amato R, Ashley EA, et al. (2015) Genetic architecture of artemisinin-resistant Plasmodium falciparum. Nature Genetics, 47, 226-234
    • (2015) Nature Genetics , vol.47 , pp. 226-234
    • Miotto, O.1    Amato, R.2    Ashley, E.A.3
  • 127
    • 0033543602 scopus 로고    scopus 로고
    • Clonal interference and the evolution of RNA viruses
    • Miralles R, Gerrish PJ, Moya A, Elena SF, (1999) Clonal interference and the evolution of RNA viruses. Science, 285, 1745-1747
    • (1999) Science , vol.285 , pp. 1745-1747
    • Miralles, R.1    Gerrish, P.J.2    Moya, A.3    Elena, S.F.4
  • 128
    • 81055143895 scopus 로고    scopus 로고
    • Limited geographical origin and global spread of sulfadoxine-resistant dhps alleles in Plasmodium falciparum populations
    • Mita T, Venkatesan M, Ohashi J, et al. (2011) Limited geographical origin and global spread of sulfadoxine-resistant dhps alleles in Plasmodium falciparum populations. The Journal of Infectious Diseases, 204, 1980-1988
    • (2011) The Journal of Infectious Diseases , vol.204 , pp. 1980-1988
    • Mita, T.1    Venkatesan, M.2    Ohashi, J.3
  • 130
    • 25444501243 scopus 로고    scopus 로고
    • Neuraminidase inhibitors for influenza
    • Moscona A, (2005) Neuraminidase inhibitors for influenza. The New England Journal of Medicine, 353, 1363-1373
    • (2005) The New England Journal of Medicine , vol.353 , pp. 1363-1373
    • Moscona, A.1
  • 131
    • 61849118968 scopus 로고    scopus 로고
    • Global transmission of oseltamivir-resistant influenza
    • Moscona A, (2009) Global transmission of oseltamivir-resistant influenza. The New England Journal of Medicine, 360, 953-956
    • (2009) The New England Journal of Medicine , vol.360 , pp. 953-956
    • Moscona, A.1
  • 132
    • 0001224667 scopus 로고
    • Some genetic aspects of sex
    • Muller HJ, (1932) Some genetic aspects of sex. The American Naturalist, 66, 118-138
    • (1932) The American Naturalist , vol.66 , pp. 118-138
    • Muller, H.J.1
  • 133
    • 0026645535 scopus 로고
    • Clonal analysis of methicillin-resistant Staphylococcus aureus strains from intercontinental sources: Association of the mec gene with divergent phylogenetic lineages implies dissemination by horizontal transfer and recombination
    • Musser JM, Kapur V, (1992) Clonal analysis of methicillin-resistant Staphylococcus aureus strains from intercontinental sources: association of the mec gene with divergent phylogenetic lineages implies dissemination by horizontal transfer and recombination. Journal of Clinical Microbiology, 30, 2058-2063
    • (1992) Journal of Clinical Microbiology , vol.30 , pp. 2058-2063
    • Musser, J.M.1    Kapur, V.2
  • 134
    • 0034015936 scopus 로고    scopus 로고
    • Negligible genetic diversity of Mycobacterium tuberculosis host immune system protein targets: Evidence of limited selective pressure
    • Musser JM, Amin A, Ramaswamy S, (2000) Negligible genetic diversity of Mycobacterium tuberculosis host immune system protein targets: evidence of limited selective pressure. Genetics, 155, 7-16
    • (2000) Genetics , vol.155 , pp. 7-16
    • Musser, J.M.1    Amin, A.2    Ramaswamy, S.3
  • 135
    • 34547757436 scopus 로고    scopus 로고
    • Parallel evolution of adaptive mutations in Plasmodium falciparum mitochondrial DNA during atovaquone-proguanil treatment
    • Musset L, Le Bras J, Clain J, (2007) Parallel evolution of adaptive mutations in Plasmodium falciparum mitochondrial DNA during atovaquone-proguanil treatment. Molecular Biology and Evolution, 24, 1582-1585
    • (2007) Molecular Biology and Evolution , vol.24 , pp. 1582-1585
    • Musset, L.1    Le Bras, J.2    Clain, J.3
  • 136
    • 10744222802 scopus 로고    scopus 로고
    • A selective sweep driven by pyrimethamine treatment in Southeast Asian malaria parasites
    • Nair S, Williams JT, Brockman A, et al. (2003) A selective sweep driven by pyrimethamine treatment in Southeast Asian malaria parasites. Molecular Biology and Evolution, 20, 1526-1536
    • (2003) Molecular Biology and Evolution , vol.20 , pp. 1526-1536
    • Nair, S.1    Williams, J.T.2    Brockman, A.3
  • 137
    • 84859536900 scopus 로고    scopus 로고
    • After the bottleneck: Genome-wide diversification of the Mycobacterium tuberculosis complex by mutation, recombination, and natural selection
    • Namouchi A, Didelot X, Scho U, et al. (2012) After the bottleneck: genome-wide diversification of the Mycobacterium tuberculosis complex by mutation, recombination, and natural selection. Genome Research, 22, 721-734
    • (2012) Genome Research , vol.22 , pp. 721-734
    • Namouchi, A.1    Didelot, X.2    Scho, U.3
  • 138
    • 82455185130 scopus 로고    scopus 로고
    • Systematic survey of clonal complexity in tuberculosis at a populational level and detailed characterization of the isolates involved
    • Navarro Y, Herranz M, Pérez-Lago L, et al. (2011) Systematic survey of clonal complexity in tuberculosis at a populational level and detailed characterization of the isolates involved. Journal of Clinical Microbiology, 49, 4131-4137
    • (2011) Journal of Clinical Microbiology , vol.49 , pp. 4131-4137
    • Navarro, Y.1    Herranz, M.2    Pérez-Lago, L.3
  • 139
    • 0034612340 scopus 로고    scopus 로고
    • Copy-choice recombination by reverse transcriptases: Reshuffling of genetic markers mediated by RNA chaperones
    • Negroni M, Buc H, (2000) Copy-choice recombination by reverse transcriptases: reshuffling of genetic markers mediated by RNA chaperones. Proceedings of the National Academy of Sciences of the USA, 97, 6385-6390
    • (2000) Proceedings of the National Academy of Sciences of the USA , vol.97 , pp. 6385-6390
    • Negroni, M.1    Buc, H.2
  • 141
    • 84925859323 scopus 로고    scopus 로고
    • Predicting evolution from the shape of genealogical trees
    • Neher RA, Russell CA, Shraiman BI, (2014) Predicting evolution from the shape of genealogical trees. ELife, 3, e03568
    • (2014) ELife , vol.3 , pp. e03568
    • Neher, R.A.1    Russell, C.A.2    Shraiman, B.I.3
  • 142
    • 0033609333 scopus 로고    scopus 로고
    • Evidence for lateral gene transfer between Archaea and bacteria from genome sequence of Thermotoga maritima
    • Nelson KE, Clayton RA, Gill SR, et al. (1999) Evidence for lateral gene transfer between Archaea and bacteria from genome sequence of Thermotoga maritima. Nature, 399, 323-329
    • (1999) Nature , vol.399 , pp. 323-329
    • Nelson, K.E.1    Clayton, R.A.2    Gill, S.R.3
  • 145
  • 146
    • 0036839953 scopus 로고    scopus 로고
    • Dissemination of new methicillin-resistant Staphylococcus aureus clones in the community
    • Okuma K, Kozue I, Turnidge JD, et al. (2002) Dissemination of new methicillin-resistant Staphylococcus aureus clones in the community. Journal of Clinical Microbiology, 40, 4289-4294
    • (2002) Journal of Clinical Microbiology , vol.40 , pp. 4289-4294
    • Okuma, K.1    Kozue, I.2    Turnidge, J.D.3
  • 147
    • 0036241092 scopus 로고    scopus 로고
    • Secrets of success of a human pathogen: Molecular evolution of pandemic clones of meticillin-resistant Staphylococcus aureus
    • Oliveira DC, Tomasz A, De Lencastre H, (2002) Secrets of success of a human pathogen: molecular evolution of pandemic clones of meticillin-resistant Staphylococcus aureus. Lancet Infectious Diseases, 2, 180-189
    • (2002) Lancet Infectious Diseases , vol.2 , pp. 180-189
    • Oliveira, D.C.1    Tomasz, A.2    De Lencastre, H.3
  • 149
    • 0035109378 scopus 로고    scopus 로고
    • Haldane's sieve and adaptation from the standing genetic variation
    • Orr HA, Betancourt AJ, (2001) Haldane's sieve and adaptation from the standing genetic variation. Genetics, 157, 875-884
    • (2001) Genetics , vol.157 , pp. 875-884
    • Orr, H.A.1    Betancourt, A.J.2
  • 150
    • 84919499306 scopus 로고    scopus 로고
    • Reliable reconstruction of HIV-1 whole genome haplotypes reveals clonal interference and genetic hitchhiking among immune escape variants
    • Pandit A, de Boer RJ, (2014) Reliable reconstruction of HIV-1 whole genome haplotypes reveals clonal interference and genetic hitchhiking among immune escape variants. Retrovirology, 11, 56
    • (2014) Retrovirology , vol.11 , pp. 56
    • Pandit, A.1    De Boer, R.J.2
  • 151
    • 76449101531 scopus 로고    scopus 로고
    • Pre-existing minority drug-resistant HIV-1 variants, adherence, and risk of antiretroviral treatment failure
    • Paredes R, Lalama CM, Ribaudo HJ, et al. (2010) Pre-existing minority drug-resistant HIV-1 variants, adherence, and risk of antiretroviral treatment failure. The Journal of Infectious Diseases, 201, 662-671
    • (2010) The Journal of Infectious Diseases , vol.201 , pp. 662-671
    • Paredes, R.1    Lalama, C.M.2    Ribaudo, H.J.3
  • 153
    • 84864068244 scopus 로고    scopus 로고
    • Standing genetic variation and the evolution of drug resistance in HIV
    • Pennings PS, (2012) Standing genetic variation and the evolution of drug resistance in HIV. PLoS Computational Biology, 8, e1002527
    • (2012) PLoS Computational Biology , vol.8 , pp. e1002527
    • Pennings, P.S.1
  • 154
    • 33646592536 scopus 로고    scopus 로고
    • Soft sweeps II-molecular population genetics of adaptation from recurrent mutation or migration
    • Pennings PS, Hermisson J, (2006) Soft sweeps II-molecular population genetics of adaptation from recurrent mutation or migration. Molecular Biology and Evolution, 23, 1076-1084
    • (2006) Molecular Biology and Evolution , vol.23 , pp. 1076-1084
    • Pennings, P.S.1    Hermisson, J.2
  • 155
    • 84896691480 scopus 로고    scopus 로고
    • Loss and recovery of genetic diversity in adapting populations of HIV
    • Pennings PS, Kryazhimskiy S, Wakeley J, (2014) Loss and recovery of genetic diversity in adapting populations of HIV. PLoS Genetics, 10, e1004000
    • (2014) PLoS Genetics , vol.10 , pp. e1004000
    • Pennings, P.S.1    Kryazhimskiy, S.2    Wakeley, J.3
  • 156
    • 42049093984 scopus 로고    scopus 로고
    • Experimental evolution and genome sequencing reveal variation in levels of clonal interference in large populations of bacteriophage phiX174
    • Pepin KM, Wichman HA, (2008) Experimental evolution and genome sequencing reveal variation in levels of clonal interference in large populations of bacteriophage phiX174. BMC Evolutionary Biology, 8, 85
    • (2008) BMC Evolutionary Biology , vol.8 , pp. 85
    • Pepin, K.M.1    Wichman, H.A.2
  • 157
    • 84898834210 scopus 로고    scopus 로고
    • Antiviral drug resistance in herpesviruses other than cytomegalovirus
    • Piret J, Boivin G, (2014) Antiviral drug resistance in herpesviruses other than cytomegalovirus. Reviews in Medical Virology, 24, 186-218
    • (2014) Reviews in Medical Virology , vol.24 , pp. 186-218
    • Piret, J.1    Boivin, G.2
  • 158
    • 84876381665 scopus 로고    scopus 로고
    • Compensatory evolution and the origins of innovations
    • Rajon E, Masel J, (2013) Compensatory evolution and the origins of innovations. Genetics, 193, 1209-1220
    • (2013) Genetics , vol.193 , pp. 1209-1220
    • Rajon, E.1    Masel, J.2
  • 160
    • 66049114296 scopus 로고    scopus 로고
    • Perspective: Evolutionary biology and the avoidance of antimicrobial resistance
    • Read AF, Huijben S, (2009) Perspective: evolutionary biology and the avoidance of antimicrobial resistance. Evolutionary Applications, 2, 40-51
    • (2009) Evolutionary Applications , vol.2 , pp. 40-51
    • Read, A.F.1    Huijben, S.2
  • 161
    • 84954077343 scopus 로고    scopus 로고
    • On the relative roles of background selection and genetic hitchhiking in shaping human cytomegalovirus genetic diversity
    • Renzette N, Kowalik TF, Jensen JD, (2015) On the relative roles of background selection and genetic hitchhiking in shaping human cytomegalovirus genetic diversity. Molecular Ecology. doi: 10.1111/mec.13331
    • (2015) Molecular Ecology
    • Renzette, N.1    Kowalik, T.F.2    Jensen, J.D.3
  • 162
    • 84930531525 scopus 로고    scopus 로고
    • Geographic and temporal trends in the molecular epidemiology and genetic mechanisms of transmitted HIV-1 drug resistance: An individual-patient- and sequence-level meta-analysis
    • Rhee SY, Blanco JL, Jordan MR, et al. (2015) Geographic and temporal trends in the molecular epidemiology and genetic mechanisms of transmitted HIV-1 drug resistance: an individual-patient- and sequence-level meta-analysis. PLoS Medicine, 12, e1001810
    • (2015) PLoS Medicine , vol.12 , pp. e1001810
    • Rhee, S.Y.1    Blanco, J.L.2    Jordan, M.R.3
  • 163
    • 0344875048 scopus 로고    scopus 로고
    • Evolutionary models of the emergence of methicillin-resistant Staphylococcus aureus
    • Robinson D, Enright M, (2003) Evolutionary models of the emergence of methicillin-resistant Staphylococcus aureus. Antimicrobial Agents and Chemotherapy, 47, 3926-3934
    • (2003) Antimicrobial Agents and Chemotherapy , vol.47 , pp. 3926-3934
    • Robinson, D.1    Enright, M.2
  • 164
    • 1142286469 scopus 로고    scopus 로고
    • Evolution of Staphylococcus aureus by large chromosomal replacements
    • Robinson DA, Enright MC, (2004) Evolution of Staphylococcus aureus by large chromosomal replacements. Journal of Bacteriology, 186, 1060-1064
    • (2004) Journal of Bacteriology , vol.186 , pp. 1060-1064
    • Robinson, D.A.1    Enright, M.C.2
  • 165
    • 84929999966 scopus 로고    scopus 로고
    • Intrahost dynamics of antiviral resistance in influenza A virus reflect complex patterns of segment linkage, reassortment, and natural selection
    • Rogers MB, Song T, Sebra R, et al. (2015) Intrahost dynamics of antiviral resistance in influenza A virus reflect complex patterns of segment linkage, reassortment, and natural selection. MBio, 6, e02464-14
    • (2015) MBio , vol.6 , pp. e2464-e2474
    • Rogers, M.B.1    Song, T.2    Sebra, R.3
  • 168
    • 0037167852 scopus 로고    scopus 로고
    • Detecting recent positive selection in the human genome from haplotype structure
    • Sabeti PC, Reich DE, Higgins JM, et al. (2002) Detecting recent positive selection in the human genome from haplotype structure. Nature, 419, 832-837
    • (2002) Nature , vol.419 , pp. 832-837
    • Sabeti, P.C.1    Reich, D.E.2    Higgins, J.M.3
  • 169
    • 35349012592 scopus 로고    scopus 로고
    • Genome-wide detection and characterization of positive selection in human populations
    • Sabeti PC, Varilly P, Fry B, et al. (2007) Genome-wide detection and characterization of positive selection in human populations. Nature, 449, 913-918
    • (2007) Nature , vol.449 , pp. 913-918
    • Sabeti, P.C.1    Varilly, P.2    Fry, B.3
  • 172
    • 33144479908 scopus 로고    scopus 로고
    • Emergence of community-associated methicillin resistant Staphylococcus aureus USA300 genotype as a major cause of health care-associated blood stream infections
    • Seybold U, Kourbatova EV, Johnson JG, et al. (2006) Emergence of community-associated methicillin resistant Staphylococcus aureus USA300 genotype as a major cause of health care-associated blood stream infections. Clinical Infectious Diseases, 42, 647-656
    • (2006) Clinical Infectious Diseases , vol.42 , pp. 647-656
    • Seybold, U.1    Kourbatova, E.V.2    Johnson, J.G.3
  • 173
    • 84899979623 scopus 로고    scopus 로고
    • Ordering microbial diversity into ecologically and genetically cohesive units
    • Shapiro BJ, Polz MF, (2014) Ordering microbial diversity into ecologically and genetically cohesive units. Trends in Microbiology, 22, 235-247
    • (2014) Trends in Microbiology , vol.22 , pp. 235-247
    • Shapiro, B.J.1    Polz, M.F.2
  • 174
    • 23744435838 scopus 로고    scopus 로고
    • Pfmdr1 mutations contribute to quinine resistance and enhance mefloquine and artemisinin sensitivity in Plasmodium falciparum
    • Sidhu AB, Valderramos SG, Fidock DA, (2005) pfmdr1 mutations contribute to quinine resistance and enhance mefloquine and artemisinin sensitivity in Plasmodium falciparum. Molecular Microbiology, 57, 913-926
    • (2005) Molecular Microbiology , vol.57 , pp. 913-926
    • Sidhu, A.B.1    Valderramos, S.G.2    Fidock, D.A.3
  • 175
    • 61849172898 scopus 로고    scopus 로고
    • Low-abundance drug-resistant viral variants in chronically HIV-infected, antiretroviral treatment-naive patients significantly impact treatment outcomes
    • Simen BB, Simons JF, Hullsiek KH, et al. (2009) Low-abundance drug-resistant viral variants in chronically HIV-infected, antiretroviral treatment-naive patients significantly impact treatment outcomes. The Journal of Infectious Diseases, 199, 693-701
    • (2009) The Journal of Infectious Diseases , vol.199 , pp. 693-701
    • Simen, B.B.1    Simons, J.F.2    Hullsiek, K.H.3
  • 178
    • 0030931719 scopus 로고    scopus 로고
    • Restricted structural gene polymorphism in the Mycobacterium tuberculosis complex indicates evolutionarily recent global dissemination
    • Sreevatsan S, Pan X, Stockbauer KE, et al. (1997) Restricted structural gene polymorphism in the Mycobacterium tuberculosis complex indicates evolutionarily recent global dissemination. Proceedings of the National Academy of Sciences, 94, 9869-9874
    • (1997) Proceedings of the National Academy of Sciences , vol.94 , pp. 9869-9874
    • Sreevatsan, S.1    Pan, X.2    Stockbauer, K.E.3
  • 179
    • 84954078319 scopus 로고    scopus 로고
    • Invasive methicillin-resistant Staphylococcus aureus infections in the United States
    • Stockman J, (2009) Invasive methicillin-resistant Staphylococcus aureus infections in the United States. Yearbook of Pediatrics, 2009, 260-263
    • (2009) Yearbook of Pediatrics , vol.2009 , pp. 260-263
    • Stockman, J.1
  • 180
    • 79960951300 scopus 로고    scopus 로고
    • Gene flow, mobile genetic elements and the recruitment of antibiotic resistance genes into Gram-negative pathogens
    • Stokes HW, Gillings MR, (2011) Gene flow, mobile genetic elements and the recruitment of antibiotic resistance genes into Gram-negative pathogens. FEMS Microbiology Reviews, 35, 790-819
    • (2011) FEMS Microbiology Reviews , vol.35 , pp. 790-819
    • Stokes, H.W.1    Gillings, M.R.2
  • 181
    • 18244378220 scopus 로고    scopus 로고
    • Dual targeting of topoisomerase IV and gyrase to reduce mutant selection: Direct testing of the paradigm by using WCK-1734, a new fluoroquinolone, and ciprofloxacin
    • Strahilevitz J, Hooper DC, (2005) Dual targeting of topoisomerase IV and gyrase to reduce mutant selection: direct testing of the paradigm by using WCK-1734, a new fluoroquinolone, and ciprofloxacin. Antimicrobial Agents and Chemotherapy, 49, 1949-1956
    • (2005) Antimicrobial Agents and Chemotherapy , vol.49 , pp. 1949-1956
    • Strahilevitz, J.1    Hooper, D.C.2
  • 182
    • 84921719133 scopus 로고    scopus 로고
    • Drug resistance. K13-propeller mutations confer artemisinin resistance in Plasmodium falciparum clinical isolates
    • Straimer J, Gnadig NF, Witkowski B, et al. (2015) Drug resistance. K13-propeller mutations confer artemisinin resistance in Plasmodium falciparum clinical isolates. Science, 347, 428-431
    • (2015) Science , vol.347 , pp. 428-431
    • Straimer, J.1    Gnadig, N.F.2    Witkowski, B.3
  • 183
    • 84867152138 scopus 로고    scopus 로고
    • Clonal interference in the evolution of influenza
    • Strelkowa N, Lässig M, (2012) Clonal interference in the evolution of influenza. Genetics, 192, 671-682
    • (2012) Genetics , vol.192 , pp. 671-682
    • Strelkowa, N.1    Lässig, M.2
  • 184
    • 84892591337 scopus 로고    scopus 로고
    • Methicillin-resistant Staphylococcus aureus: An evolving pathogen
    • Stryjewski ME, Corey GR, (2014) Methicillin-resistant Staphylococcus aureus: an evolving pathogen. Clinical Infectious Diseases, 58, S10-S19
    • (2014) Clinical Infectious Diseases , vol.58 , pp. S10-S19
    • Stryjewski, M.E.1    Corey, G.R.2
  • 185
    • 0032698219 scopus 로고    scopus 로고
    • A genetic map and recombination parameters of the human malaria parasite Plasmodium falciparum
    • Su X, Ferdig MT, Huang Y, et al. (1999) A genetic map and recombination parameters of the human malaria parasite Plasmodium falciparum. Science, 286, 1351-1353
    • (1999) Science , vol.286 , pp. 1351-1353
    • Su, X.1    Ferdig, M.T.2    Huang, Y.3
  • 186
    • 84869066832 scopus 로고    scopus 로고
    • Dynamic population changes in Mycobacterium tuberculosis during acquisition and fixation of drug resistance in patients
    • Sun G, Luo T, Yang C, et al. (2012) Dynamic population changes in Mycobacterium tuberculosis during acquisition and fixation of drug resistance in patients. The Journal of Infectious Diseases, 206, 1724-1733
    • (2012) The Journal of Infectious Diseases , vol.206 , pp. 1724-1733
    • Sun, G.1    Luo, T.2    Yang, C.3
  • 187
    • 84870200615 scopus 로고    scopus 로고
    • Evolutionary implications of horizontal gene transfer
    • Syvanen M, (2012) Evolutionary implications of horizontal gene transfer. Annual Review of Genetics, 46, 341-358
    • (2012) Annual Review of Genetics , vol.46 , pp. 341-358
    • Syvanen, M.1
  • 189
    • 0024313579 scopus 로고
    • Statistical method for testing the neutral mutation hypothesis by DNA polymorphism
    • Tajima F, (1989) Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics, 123, 585-595
    • (1989) Genetics , vol.123 , pp. 585-595
    • Tajima, F.1
  • 190
    • 84871944250 scopus 로고    scopus 로고
    • Genetic loci associated with delayed clearance of Plasmodium falciparum following artemisinin treatment in Southeast Asia
    • Takala-Harrison S, Clark TG, Jacob CG, et al. (2013) Genetic loci associated with delayed clearance of Plasmodium falciparum following artemisinin treatment in Southeast Asia. Proceedings of the National Academy of Sciences of the USA, 110, 240-245
    • (2013) Proceedings of the National Academy of Sciences of the USA , vol.110 , pp. 240-245
    • Takala-Harrison, S.1    Clark, T.G.2    Jacob, C.G.3
  • 191
    • 84942326846 scopus 로고    scopus 로고
    • Independent emergence of artemisinin resistance mutations among Plasmodium falciparum in Southeast Asia
    • Takala-Harrison S, Jacob CG, Arze C, et al. (2015) Independent emergence of artemisinin resistance mutations among Plasmodium falciparum in Southeast Asia. The Journal of Infectious Diseases, 211, 670-679
    • (2015) The Journal of Infectious Diseases , vol.211 , pp. 670-679
    • Takala-Harrison, S.1    Jacob, C.G.2    Arze, C.3
  • 192
    • 84555171441 scopus 로고    scopus 로고
    • Evolutionary paths to antibiotic resistance under dynamically sustained drug selection
    • Toprak E, Veres A, Michel JB, Chait R, Hartl DL, Kishony R, (2012) Evolutionary paths to antibiotic resistance under dynamically sustained drug selection. Nature Genetics, 44, 101-105
    • (2012) Nature Genetics , vol.44 , pp. 101-105
    • Toprak, E.1    Veres, A.2    Michel, J.B.3    Chait, R.4    Hartl, D.L.5    Kishony, R.6
  • 193
    • 84925354867 scopus 로고    scopus 로고
    • Spread of artemisinin-resistant Plasmodium falciparum in Myanmar: A cross-sectional survey of the K13 molecular marker
    • Tun KM, Imwong M, Lwin KM, et al. (2015) Spread of artemisinin-resistant Plasmodium falciparum in Myanmar: a cross-sectional survey of the K13 molecular marker. The Lancet Infectious Diseases, 15, 415-421
    • (2015) The Lancet Infectious Diseases , vol.15 , pp. 415-421
    • Tun, K.M.1    Imwong, M.2    Lwin, K.M.3
  • 194
    • 77951006096 scopus 로고    scopus 로고
    • Long term probability of detecting drug-resistant HIV in treatment-naive patients initiating combination antiretroviral therapy
    • UK Collaborative Group on HIV Drug Resistance and UK CHIC Study Group and Others
    • UK Collaborative Group on HIV Drug Resistance and UK CHIC Study Group and Others (2010) Long term probability of detecting drug-resistant HIV in treatment-naive patients initiating combination antiretroviral therapy. Clinical Infectious Diseases, 50, 1275-1285
    • (2010) Clinical Infectious Diseases , vol.50 , pp. 1275-1285
  • 195
    • 69949189513 scopus 로고    scopus 로고
    • Phylogenetic detection of horizontal gene transfer during the step-wise genesis of Mycobacterium tuberculosis
    • Veyrier F, Pletzer D, Turenne C, Behr MA, (2009) Phylogenetic detection of horizontal gene transfer during the step-wise genesis of Mycobacterium tuberculosis. BMC Evolutionary Biology, 9, 196
    • (2009) BMC Evolutionary Biology , vol.9 , pp. 196
    • Veyrier, F.1    Pletzer, D.2    Turenne, C.3    Behr, M.A.4
  • 196
    • 77950435762 scopus 로고    scopus 로고
    • Origin and evolution of sulfadoxine resistant Plasmodium falciparum
    • Vinayak S, Alam MT, Mixson-Hayden T, et al. (2010) Origin and evolution of sulfadoxine resistant Plasmodium falciparum. PLoS Pathogens, 6, e1000830
    • (2010) PLoS Pathogens , vol.6 , pp. e1000830
    • Vinayak, S.1    Alam, M.T.2    Mixson-Hayden, T.3
  • 199
  • 200
    • 33645666942 scopus 로고    scopus 로고
    • Darwinian evolution can follow only very few mutational paths to fitter proteins
    • Weinreich DM, Delaney NF, DePristo MA, Hartl DL, (2006) Darwinian evolution can follow only very few mutational paths to fitter proteins. Science, 312, 111-114
    • (2006) Science , vol.312 , pp. 111-114
    • Weinreich, D.M.1    Delaney, N.F.2    DePristo, M.A.3    Hartl, D.L.4
  • 202
    • 77951877448 scopus 로고    scopus 로고
    • Prevalence of transmitted drug resistance associated mutations and HIV-1 subtypes in new HIV-1 diagnoses, US-2006
    • Wheeler WH, Ziebell RA, Zabina H, et al. (2010) Prevalence of transmitted drug resistance associated mutations and HIV-1 subtypes in new HIV-1 diagnoses, US-2006. AIDS, 24, 1203-1212
    • (2010) AIDS , vol.24 , pp. 1203-1212
    • Wheeler, W.H.1    Ziebell, R.A.2    Zabina, H.3
  • 204
    • 84954075960 scopus 로고    scopus 로고
    • WHO. World Health Organization. Available from (accessed 23 May 2015)
    • WHO (2014a) Global Tuberculosis Control: Surveillance, Planning, Financing. World Health Organization. Available from http://www.who.int/tb/publications/global-report/en/ (accessed 23 May 2015)
    • (2014) Global Tuberculosis Control: Surveillance, Planning, Financing
  • 205
    • 84925300064 scopus 로고    scopus 로고
    • WHO. (accessed 26 May 2015)
    • WHO (2014b) Influenza fact sheet no. 211. Available from http://www.who.int/mediacentre/factsheets/fs211/en/ (accessed 26 May 2015)
    • (2014) Influenza Fact Sheet No. 211
  • 206
    • 84920884329 scopus 로고    scopus 로고
    • WHO. World Health Organization, ISBN 978 92 4 156483 0
    • WHO (2014c) World Malaria Report 2014. World Health Organization, ISBN 978 92 4 156483 0
    • (2014) World Malaria Report 2014
  • 208
    • 17844365567 scopus 로고    scopus 로고
    • Emerging pathogens: The epidemiology and evolution of species jumps
    • Woolhouse ME, Haydon DT, Antia R, (2005) Emerging pathogens: the epidemiology and evolution of species jumps. Trends in Ecology & Evolution, 20, 238-244
    • (2005) Trends in Ecology & Evolution , vol.20 , pp. 238-244
    • Woolhouse, M.E.1    Haydon, D.T.2    Antia, R.3
  • 209
    • 0037130254 scopus 로고    scopus 로고
    • Genetic diversity and chloroquine selective sweeps in Plasmodium falciparum
    • Wootton JC, Feng X, Ferdig MT, et al. (2002) Genetic diversity and chloroquine selective sweeps in Plasmodium falciparum. Nature, 418, 320-323
    • (2002) Nature , vol.418 , pp. 320-323
    • Wootton, J.C.1    Feng, X.2    Ferdig, M.T.3
  • 210
    • 0030480839 scopus 로고    scopus 로고
    • Tracking the evolutionary origin of the methicillin resistance gene: Cloning and sequencing of a homologue of mecA from a methicillin susceptible strain of Staphylococcus sciuri
    • Wu S, Piscitelli C, de Lencastre H, Tomasz A, (1996) Tracking the evolutionary origin of the methicillin resistance gene: cloning and sequencing of a homologue of mecA from a methicillin susceptible strain of Staphylococcus sciuri. Microbial Drug Resistance, 2, 435-441
    • (1996) Microbial Drug Resistance , vol.2 , pp. 435-441
    • Wu, S.1    Piscitelli, C.2    De Lencastre, H.3    Tomasz, A.4
  • 212
    • 84886937649 scopus 로고    scopus 로고
    • Quantifying selection against synonymous mutations in HIV-1 env evolution
    • Zanini F, Neher RA, (2013) Quantifying selection against synonymous mutations in HIV-1 env evolution. Journal of Virology, 87, 11843-11850
    • (2013) Journal of Virology , vol.87 , pp. 11843-11850
    • Zanini, F.1    Neher, R.A.2


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