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Volumn 189, Issue 3, 2011, Pages 1045-1060

Interfering waves of adaptation promote spatial mixing

Author keywords

[No Author keywords available]

Indexed keywords

ADAPTATION; ARTICLE; ASEXUAL REPRODUCTION; BIOFILM; CLONAL VARIATION; GENE MUTATION; GENETIC RECOMBINATION; HABITAT; MICROBIAL COLONIZATION; MUTATION RATE; NONHUMAN; POPULATION SIZE; PRIORITY JOURNAL; SPATIAL SUMMATION; WAVEFORM;

EID: 81255175660     PISSN: 00166731     EISSN: 19432631     Source Type: Journal    
DOI: 10.1534/genetics.111.130112     Document Type: Article
Times cited : (45)

References (53)
  • 2
    • 70350641005 scopus 로고    scopus 로고
    • Genome evolution and adaptation in a long-term experiment with E
    • Barrick, J. E., D. S. Yu, S. H. Yoon, H. Jeong, T. K. Oh et al., 2009 Genome evolution and adaptation in a long-term experiment with E. coli. Nature 461(7268): 1243-1247
    • (2009) Coli. Nature , vol.461 , Issue.7268 , pp. 1243-1247
    • Barrick, J.E.1    Yu, D.S.2    Yoon, S.H.3    Jeong, H.4    Oh, T.K.5
  • 3
    • 34548693859 scopus 로고    scopus 로고
    • Recombination speeds adaptation by reducing competition between beneficial mutations in populations of Escherichia coli
    • Cooper, T. F., 2007 Recombination speeds adaptation by reducing competition between beneficial mutations in populations of Escherichia coli. PLoS Biol. 5(9): e225.
    • (2007) PLoS Biol , vol.5 , Issue.9
    • Cooper, T.F.1
  • 5
    • 33847314378 scopus 로고    scopus 로고
    • Beneficial mutation selection balance and the effect of linkage on positive selection
    • Desai, M. M., and D. S. Fisher, 2007 Beneficial mutation selection balance and the effect of linkage on positive selection. Genetics 176: 1759-1798
    • (2007) Genetics , vol.176 , pp. 1759-1798
    • Desai, M.M.1    Fisher, D.S.2
  • 6
    • 33847256353 scopus 로고    scopus 로고
    • The speed of evolution and maintenance of variation in asexual populations
    • Desai, M. M., D. S. Fisher, and A. W. Murray, 2007 The speed of evolution and maintenance of variation in asexual populations. Curr. Biol. 17(5): 385-394
    • (2007) Curr. Biol , vol.17 , Issue.5 , pp. 385-394
    • Desai, M.M.1    Fisher, D.S.2    Murray, A.W.3
  • 7
    • 0033555421 scopus 로고    scopus 로고
    • Diminishing returns from mutation supply rate in asexual populations
    • de Visser, J. A. G. M., C. W. Zeyl, J. L. Blanchard, P. J. Gerrish, and R. Lenski, 1999 Diminishing returns from mutation supply rate in asexual populations. Science 283(5400): 404-406
    • (1999) Science , vol.283 , Issue.5400 , pp. 404-406
    • de Visser, J.A.G.M.1    Zeyl, C.W.2    Blanchard, J.L.3    Gerrish, P.J.4    Lenski, R.5
  • 8
    • 0037671479 scopus 로고    scopus 로고
    • Interacting particles, the stochastic FKPP equation, and duality
    • Doering, C., C. Mueller, and P. Smereka, 2003 Interacting particles, the stochastic FKPP equation, and duality. Physica A 325(1-2): 243-259
    • (2003) Physica A , vol.325 , Issue.1-2 , pp. 243-259
    • Doering, C.1    Mueller, C.2    Smereka, P.3
  • 10
    • 0035296743 scopus 로고    scopus 로고
    • Biological evolution and statistical physics
    • Drossel, B., 2001 Biological evolution and statistical physics. Adv. Phys. 50(2): 209-295
    • (2001) Adv. Phys , vol.50 , Issue.2 , pp. 209-295
    • Drossel, B.1
  • 11
    • 78650819654 scopus 로고    scopus 로고
    • Spatial dynamics of the 1918 influenza pandemic in England, Wales and the United States
    • Eggo, R. M., S. Cauchemez, and N. M. Ferguson, 2011 Spatial dynamics of the 1918 influenza pandemic in England, Wales and the United States. J. R. Soc. Interface/R. Soc. 8(55): 233-243.
    • (2011) J. R. Soc. Interface/R. Soc , vol.8 , Issue.55 , pp. 233-243
    • Eggo, R.M.1    Cauchemez, S.2    Ferguson, N.M.3
  • 12
    • 0030017289 scopus 로고    scopus 로고
    • Punctuated evolution caused by selection of rare beneficial mutations
    • Elena, S. F., V. S. Cooper, and R. E. Lenski, 1996 Punctuated evolution caused by selection of rare beneficial mutations. Science 272(5269): 1802-1804
    • (1996) Science , vol.272 , Issue.5269 , pp. 1802-1804
    • Elena, S.F.1    Cooper, V.S.2    Lenski, R.E.3
  • 13
    • 34447546660 scopus 로고    scopus 로고
    • The distribution of fitness effects of new mutations
    • Eyre-Walker, A., and P. D. Keightley, 2007 The distribution of fitness effects of new mutations. Nat. Rev. Genet. 8(8): 610-618.
    • (2007) Nat. Rev. Genet , vol.8 , Issue.8 , pp. 610-618
    • Eyre-Walker, A.1    Keightley, P.D.2
  • 15
    • 0000268135 scopus 로고
    • The wave of advance of advantageous genes
    • Fisher, R. A., 1937 The wave of advance of advantageous genes. Ann. Eugen. 7: 355-369
    • (1937) Ann. Eugen , vol.7 , pp. 355-369
    • Fisher, R.A.1
  • 16
    • 2542583245 scopus 로고    scopus 로고
    • The fate of competing beneficial mutations in an asexual population
    • Gerrish, P. J., and R. E. Lenski, 1998 The fate of competing beneficial mutations in an asexual population. Genetica 102: 127-144.
    • (1998) Genetica , vol.102 , pp. 127-144
    • Gerrish, P.J.1    Lenski, R.E.2
  • 18
    • 33746140082 scopus 로고    scopus 로고
    • Adaptive evolution in a spatially structured asexual population
    • Gordo, I., and P. R. Campos, 2006 Adaptive evolution in a spatially structured asexual population. Genetica 127(1-3): 217-229.
    • (2006) Genetica , vol.127 , Issue.1-3 , pp. 217-229
    • Gordo, I.1    Campos, P.R.2
  • 19
    • 31444433936 scopus 로고    scopus 로고
    • Mitochondrial DNA mutations are established in human colonic stem cells, and mutated clones expand by crypt fission
    • Greaves, L. C., S. L. Preston, P. J. Tadrous, R. W. Taylor, M. J. Barron et al., 2006 Mitochondrial DNA mutations are established in human colonic stem cells, and mutated clones expand by crypt fission. Proc. Natl. Acad. Sci. USA 103(3): 714-719
    • (2006) Proc. Natl. Acad. Sci. USA , vol.103 , Issue.3 , pp. 714-719
    • Greaves, L.C.1    Preston, S.L.2    Tadrous, P.J.3    Taylor, R.W.4    Barron, M.J.5
  • 20
    • 33747620509 scopus 로고    scopus 로고
    • The effect of population structure on the adaptive radiation of microbial populations evolving in spatially structured environments
    • Habets, M. G. J. L., D. E. Rozen, R. F. Hoekstra, and J. A. G. M. de Visser, 2006 The effect of population structure on the adaptive radiation of microbial populations evolving in spatially structured environments. Ecol. Lett. 9(9): 1041-1048
    • (2006) Ecol. Lett , vol.9 , Issue.9 , pp. 1041-1048
    • Habets, M.G.J.L.1    Rozen, D.E.2    Hoekstra, R.F.3    de Visser, J.A.G.M.4
  • 21
    • 34548035443 scopus 로고    scopus 로고
    • Spatial structure inhibits the rate of invasion of beneficial mutations in asexual populations
    • Habets, M. G. J. L., T. Czárán, R. F. Hoekstra, and J. A. G. M. de Visser, 2007 Spatial structure inhibits the rate of invasion of beneficial mutations in asexual populations. Proc. Biol. Sci. 274 (1622): 2139-2143
    • (2007) Proc. Biol. Sci , vol.274 , Issue.1622 , pp. 2139-2143
    • Habets, M.G.J.L.1    Czárán, T.2    Hoekstra, R.F.3    de Visser, J.A.G.M.4
  • 22
    • 0000968797 scopus 로고
    • A mathematical theory of natural and artificial selection
    • Haldane, J. B. S., 1927 A mathematical theory of natural and artificial selection. Proc. Camb. Philos. Soc. 23: 838-844
    • (1927) Proc. Camb. Philos. Soc , vol.23 , pp. 838-844
    • Haldane, J.B.S.1
  • 23
    • 79952179424 scopus 로고    scopus 로고
    • The noisy edge of traveling waves
    • Hallatschek, O., 2011 The noisy edge of traveling waves. Proc. Natl. Acad. Sci. USA 108(5): 1783.
    • (2011) Proc. Natl. Acad. Sci. USA , vol.108 , Issue.5 , pp. 1783
    • Hallatschek, O.1
  • 24
    • 69749120242 scopus 로고    scopus 로고
    • Fisher waves in the strong noise limit
    • Hallatschek, O., and K. Korolev, 2009 Fisher waves in the strong noise limit. Phys. Rev. Lett. 103(10): 1-4
    • (2009) Phys. Rev. Lett , vol.103 , Issue.10 , pp. 1-4
    • Hallatschek, O.1    Korolev, K.2
  • 25
    • 73949088975 scopus 로고    scopus 로고
    • Life at the front of an expanding population
    • Hallatschek, O., and D. R. Nelson, 2010 Life at the front of an expanding population. Evolution 64(1): 193-206
    • (2010) Evolution , vol.64 , Issue.1 , pp. 193-206
    • Hallatschek, O.1    Nelson, D.R.2
  • 26
    • 6344221308 scopus 로고    scopus 로고
    • Forecast and control of epidemics in a globalized world
    • Hufnagel, L., D. Brockmann, and T. Geisel, 2004 Forecast and control of epidemics in a globalized world. Proc. Natl. Acad. Sci. USA 101: 15124-15129
    • (2004) Proc. Natl. Acad. Sci. USA , vol.101 , pp. 15124-15129
    • Hufnagel, L.1    Brockmann, D.2    Geisel, T.3
  • 28
    • 4243979739 scopus 로고
    • Dynamic scaling of growing interfaces
    • Kardar, M., G. Parisi, and Y. Zhang, 1986 Dynamic scaling of growing interfaces. Phys. Rev. Lett. 56(9): 889-892
    • (1986) Phys. Rev. Lett , vol.56 , Issue.9 , pp. 889-892
    • Kardar, M.1    Parisi, G.2    Zhang, Y.3
  • 30
    • 0000800333 scopus 로고
    • On the probability of fixation of mutant genes in a population
    • Kimura, M., 1962 On the probability of fixation of mutant genes in a population. Genetics 47: 713-719
    • (1962) Genetics , vol.47 , pp. 713-719
    • Kimura, M.1
  • 31
    • 0002722044 scopus 로고
    • A study of the equation of diffusion with increase in the quantity of matter, and its application to a biological problem
    • Kolmogorov, A. N., I. G. Petrovskii, and N. S. Piskunov, 1937 A study of the equation of diffusion with increase in the quantity of matter, and its application to a biological problem. Bull. Moscow Univ. Math. Ser. A 1(1): 713-719
    • (1937) Bull. Moscow Univ. Math. Ser. A , vol.1 , Issue.1 , pp. 713-719
    • Kolmogorov, A.N.1    Petrovskii, I.G.2    Piskunov, N.S.3
  • 33
    • 0016054647 scopus 로고
    • A simple proof that certain quantities are independent of the geographical structure of population
    • Maruyama, T., 1974 A simple proof that certain quantities are independent of the geographical structure of population. Theor. Popul. Biol. 5(2): 148-154
    • (1974) Theor. Popul. Biol , vol.5 , Issue.2 , pp. 148-154
    • Maruyama, T.1
  • 34
    • 33845243362 scopus 로고    scopus 로고
    • Cancer as an evolutionary and ecological process
    • Merlo, L. M. F., J. W. Pepper, B. J. Reid, and C. C. Maley, 2006 Cancer as an evolutionary and ecological process. Nat. Rev. Cancer 6(12): 924-935
    • (2006) Nat. Rev. Cancer , vol.6 , Issue.12 , pp. 924-935
    • Merlo, L.M.F.1    Pepper, J.W.2    Reid, B.J.3    Maley, C.C.4
  • 35
    • 0033543602 scopus 로고    scopus 로고
    • Clonal interference and the evolution of RNA viruses
    • Miralles, R., P. J. Gerrish, A. Moya, and S. F. Elena, 1999 Clonal interference and the evolution of RNA viruses. Science 285 (5434): 1745.
    • (1999) Science , vol.285 , Issue.5434 , pp. 1745
    • Miralles, R.1    Gerrish, P.J.2    Moya, A.3    Elena, S.F.4
  • 36
    • 0001224667 scopus 로고
    • Some genetic aspects of sex
    • Muller, H., 1932 Some genetic aspects of sex. Am. Nat. 66(703): 118-138
    • (1932) Am. Nat , vol.66 , Issue.703 , pp. 118-138
    • Muller, H.1
  • 37
    • 77950831062 scopus 로고    scopus 로고
    • Emergence of spatial structure in cell groups and the evolution of cooperation
    • Nadell, C. D., K. R. Foster, and J. B. Xavier, 2010 Emergence of spatial structure in cell groups and the evolution of cooperation. PLoS Comput. Biol. 6(3): e1000716.
    • (2010) PLoS Comput. Biol , vol.6 , Issue.3
    • Nadell, C.D.1    Foster, K.R.2    Xavier, J.B.3
  • 38
    • 77749268358 scopus 로고    scopus 로고
    • Rate of adaptation in large sexual populations
    • Neher, R. A., B. I. Shraiman, and D. S. Fisher, 2010 Rate of adaptation in large sexual populations. Genetics 184: 467-481
    • (2010) Genetics , vol.184 , pp. 467-481
    • Neher, R.A.1    Shraiman, B.I.2    Fisher, D.S.3
  • 39
    • 0001519096 scopus 로고
    • Experiments with the chemostat on spontaneous mutations of bacteria
    • Novick, A., and L. Szilard, 1950 Experiments with the chemostat on spontaneous mutations of bacteria. Proc. Natl. Acad. Sci. USA 36(12): 708.
    • (1950) Proc. Natl. Acad. Sci. USA , vol.36 , Issue.12 , pp. 708
    • Novick, A.1    Szilard, L.2
  • 40
    • 36749000572 scopus 로고    scopus 로고
    • Clonal interference in large populations
    • Park, S. C., and J. Krug, 2007 Clonal interference in large populations. Proc. Natl. Acad. Sci. USA 104(46): 18135.
    • (2007) Proc. Natl. Acad. Sci. USA , vol.104 , Issue.46 , pp. 18135
    • Park, S.C.1    Krug, J.2
  • 41
    • 52749098548 scopus 로고    scopus 로고
    • The fixation probability of beneficial mutations
    • Patwa, Z., and L. M. Wahl, 2008 The fixation probability of beneficial mutations. J. R. Soc. Interface/R. Soc. 5(28): 1279-1289.
    • (2008) J. R. Soc. Interface/R. Soc , vol.5 , Issue.28 , pp. 1279-1289
    • Patwa, Z.1    Wahl, L.M.2
  • 42
    • 34547924819 scopus 로고    scopus 로고
    • Adaptive mutations in bacteria: High rate and small effects
    • Perfeito, L., L. Fernandes, C. Mota, and I. Gordo, 2007 Adaptive mutations in bacteria: high rate and small effects. Science 317 (5839): 813-815
    • (2007) Science , vol.317 , Issue.5839 , pp. 813-815
    • Perfeito, L.1    Fernandes, L.2    Mota, C.3    Gordo, I.4
  • 44
    • 0000439075 scopus 로고    scopus 로고
    • Universal distributions for growth processes in 1+1 dimensions and random matrices
    • Prähofer, M., and H. Spohn, 2000 Universal distributions for growth processes in 1+1 dimensions and random matrices. Phys. Rev. Lett. 84(21): 4882-4885
    • (2000) Phys. Rev. Lett , vol.84 , Issue.21 , pp. 4882-4885
    • Prähofer, M.1    Spohn, H.2
  • 45
    • 78951480118 scopus 로고    scopus 로고
    • Parallel adaptation: One or many waves of advance of an advantageous allele?
    • Ralph, P. L., and G. Coop, 2010 Parallel adaptation: One or many waves of advance of an advantageous allele? Genetics 52: 647-668
    • (2010) Genetics , vol.52 , pp. 647-668
    • Ralph, P.L.1    Coop, G.2
  • 47
    • 0037172667 scopus 로고    scopus 로고
    • Fitness effects of fixed beneficial mutations in microbial populations
    • Rozen, D. E., J. A. G. M. de Visser, and P. J. Gerrish, 2002 Fitness effects of fixed beneficial mutations in microbial populations. Curr. Biol. 12(12): 1040-1045
    • (2002) Curr. Biol , vol.12 , Issue.12 , pp. 1040-1045
    • Rozen, D.E.1    de Visser, J.A.G.M.2    Gerrish, P.J.3
  • 48
    • 73949146486 scopus 로고    scopus 로고
    • Clonal expansions in ulcerative colitis identify patients with neoplasia
    • Salk, J. J., S. J. Salipante, R. A. Risques, D. Crispin, L. Li et al., 2009 Clonal expansions in ulcerative colitis identify patients with neoplasia. Proc. Natl. Acad. Sci. USA 106(49): 20871-20876
    • (2009) Proc. Natl. Acad. Sci. USA , vol.106 , Issue.49 , pp. 20871-20876
    • Salk, J.J.1    Salipante, S.J.2    Risques, R.A.3    Crispin, D.4    Li, L.5
  • 50
    • 77951593683 scopus 로고    scopus 로고
    • Beneficial mutations and the dynamics of adaptation in asexual populations
    • Sniegowski, P. D., and P. J. Gerrish, 2010 Beneficial mutations and the dynamics of adaptation in asexual populations. Philos. Trans. R. Soc. B 365(1544): 1255-1263
    • (2010) Philos. Trans. R. Soc. B , vol.365 , Issue.1544 , pp. 1255-1263
    • Sniegowski, P.D.1    Gerrish, P.J.2
  • 51
    • 0033793385 scopus 로고    scopus 로고
    • Spatial organization of microbial biofilm communities
    • Tolker-Nielsen, T., and S. Molin, 2000 Spatial organization of microbial biofilm communities. Microb. Ecol. 40(2): 75-84
    • (2000) Microb. Ecol , vol.40 , Issue.2 , pp. 75-84
    • Tolker-Nielsen, T.1    Molin, S.2
  • 52
    • 0034015354 scopus 로고    scopus 로고
    • Biofilm, city of microbes
    • Watnick, P., and R. Kolter, 2000 Biofilm, city of microbes. J. Bacteriol. 182(10): 2675.
    • (2000) J. Bacteriol , vol.182 , Issue.10 , pp. 2675
    • Watnick, P.1    Kolter, R.2
  • 53
    • 0034765995 scopus 로고    scopus 로고
    • Direct estimate of the mutation rate and the distribution of fitness effects in the yeast Saccharomyces cerevisiae
    • Wloch, D. M., K. Szafraniec, R. H. Borts, and R. Korona, 2001 Direct estimate of the mutation rate and the distribution of fitness effects in the yeast Saccharomyces cerevisiae. Genetics 159: 441-452.
    • (2001) Genetics , vol.159 , pp. 441-452
    • Wloch, D.M.1    Szafraniec, K.2    Borts, R.H.3    Korona, R.4


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