Genome-wide detection and characterization of positive selection in human populations
(246)
Sabeti, Pardis C
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Varilly, Patrick
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Fry, Ben
bn
Lohmueller, Jason
bn
Hostetter, Elizabeth
bn
Cotsapas, Chris
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Xie, Xiaohui
bn
Byrne, Elizabeth H
bn
McCarroll, Steven A
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Gaudet, Rachelle
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Schaffner, Stephen F
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Lander, Eric S
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Frazer, Kelly A
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Ballinger, Dennis G
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Cox, David R
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Hinds, David A
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Stuve, Laura L
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Gibbs, Richard A
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Belmont, John W
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Boudreau, Andrew
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Hardenbol, Paul
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Leal, Suzanne M
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Pasternak, Shiran
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Wheeler, David A
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Willis, Thomas D
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Yu, Fuli
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Yang, Huanming
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Zeng, Changqing
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Gao, Yang
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Hu, Haoran
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Hu, Weitao
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Li, Chaohua
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Lin, Wei
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Liu, Siqi
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Pan, Hao
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Tang, Xiaoli
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Wang, Jian
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Wang, Wei
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Yu, Jun
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Zhang, Bo
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Zhang, Qingrun
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Zhao, Hongbin
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Zhao, Hui
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Zhou, Jun
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Gabriel, Stacey B
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Barry, Rachel
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Blumenstiel, Brendan
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Camargo, Amy
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Defelice, Matthew
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Faggart, Maura
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Goyette, Mary
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Gupta, Supriya
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Moore, Jamie
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Nguyen, Huy
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Onofrio, Robert C
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Parkin, Melissa
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Roy, Jessica
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Stahl, Erich
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Winchester, Ellen
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Ziaugra, Liuda
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Altshuler, David
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Shen, Yan
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Yao, Zhijian
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Huang, Wei
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Chu, Xun
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He, Yungang
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Jin, Li
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Liu, Yangfan
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Shen, Yayun
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Sun, Weiwei
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Wang, Haifeng
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Wang, Yi
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Wang, Ying
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Xiong, Xiaoyan
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Xu, Liang
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Waye, Mary M Y
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Tsui, Stephen K W
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Xue, Hong
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Wong, J Tze Fei
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Galver, Luana M
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Fan, Jian Bing
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Gunderson, Kevin
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Murray, Sarah S
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Oliphant, Arnold R
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Chee, Mark S
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Montpetit, Alexandre
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Chagnon, Fanny
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Ferretti, Vincent
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Leboeuf, Martin
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Olivier, Jean François
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Phillips, Michael S
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Roumy, Stéphanie
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Sallée, Clémentine
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Verner, Andrei
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Hudson, Thomas J
s
Kwok, Pui Yan
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Cai, Dongmei
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Koboldt, Daniel C
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Miller, Raymond D
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Pawlikowska, Ludmila
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Taillon Miller, Patricia
u
Xiao, Ming
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Tsui, Lap Chee
v
Mak, William
v
You, Qiang Song
v
Tam, Paul K H
v
Nakamura, Yusuke
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Kawaguchi, Takahisa
x
Kitamoto, Takuya
x
Morizono, Takashi
x
Nagashima, Atsushi
x
Ohnishi, Yozo
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Sekine, Akihiro
x
Tanaka, Toshihiro
x
Tsunoda, Tatsuhiko
x
Deloukas, Panos
y
Bird, Christine P
y
Delgado, Marcos
y
Dermitzakis, Emmanouil T
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Gwilliam, Rhian
y
Hunt, Sarah
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Morrison, Jonathan
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Powell, Don
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Stranger, Barbara E
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Whittaker, Pamela
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Bentley, David R
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Daly, Mark J
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De Bakker, Paul I W
g,i
Barrett, Jeff
g,i
Chretien, Yves R
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Maller, Julian
g,i
Patterson, Nick
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Pe'Er, Itsik
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Price, Alkes
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Purcell, Shaun
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Richter, Daniel J
g
Saxena, Richa
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Sham, Pak C
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Stein, Lincoln D
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Krishnan, Lalitha
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Smith, Albert Vernon
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Tello Ruiz, Marcela K
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Thorisson, Gudmundur A
ac
Chakravarti, Aravinda
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Chen, Peter E
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Cutler, David J
ad
Kashuk, Carl S
ad
Lin, Shin
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Abecasis, Gonçalo R
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Guan, Weihua
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Li, Yun
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Munro, Heather M
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Qin, Zhaohui Steve
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Thomas, Daryl J
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McVean, Gilean
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Auton, Adam
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Bottolo, Leonardo
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Cardin, Niall
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Eyheramendy, Susana
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Freeman, Colin
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Marchini, Jonathan
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Myers, Simon
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Spencer, Chris
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Stephens, Matthew
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Donnelly, Peter
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Cardon, Lon R
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Clarke, Geraldine
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Evans, David M
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Morris, Andrew P
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Weir, Bruce S
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Johnson, Todd A
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Mullikin, James C
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Sherry, Stephen T
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Feolo, Michael
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Skol, Andrew
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Zhang, Houcan
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Matsuda, Ichiro
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Fukushima, Yoshimitsu
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MacEr, Darryl R
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Suda, Eiko
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Rotimi, Charles N
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Adebamowo, Clement A
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Ajayi, Ike
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Aniagwu, Toyin
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Marshall, Patricia A
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Nkwodimmah, Chibuzor
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Royal, Charmaine D M
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Leppert, Mark F
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Dixon, Missy
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Peiffer, Andy
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Qiu, Renzong
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Kent, Alastair
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Kato, Kazuto
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Niikawa, Norio
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Adewole, Isaac F
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Knoppers, Bartha M
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Foster, Morris W
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Clayton, Ellen Wright
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Watkin, Jessica
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Muzny, Donna
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Nazareth, Lynne
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Sodergren, Erica
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Weinstock, George M
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Yakub, Imtaz
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Birren, Bruce W
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Wilson, Richard K
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Fulton, Lucinda L
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Rogers, Jane
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Burton, John
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Carter, Nigel P
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Clee, Christopher M
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Griffiths, Mark
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Jones, Matthew C
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McLay, Kirsten
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Plumb, Robert W
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Ross, Mark T
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Sims, Sarah K
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Willey, David L
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Chen, Zhu
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Han, Hua
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Kang, Le
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Godbout, Martin
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Wallenburg, John C
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L'Archevêque, Paul
bg
Bellemare, Guy
bg
Saeki, Koji
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Wang, Hongguang
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An, Daochang
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Fu, Hongbo
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Li, Qing
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Wang, Zhen
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Wang, Renwu
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Holden, Arthur L
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Brooks, Lisa D
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McEwen, Jean E
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Guyer, Mark S
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Wang, Vivian Ota
am,bk
Peterson, Jane L
am
Shi, Michael
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Spiegel, Jack
bk
Sung, Lawrence M
bm
Zacharia, Lynn F
am
Collins, Francis S
am
Kennedy, Karen
bf
Jamieson, Ruth
be
Stewart, John
be
more..
|
-
1
-
-
35348983887
-
A second generation human haplotype map of over 3.1 million SNPs
-
The International HapMap Consortium, doi:10.1038/nature06258 this issue
-
The International HapMap Consortium. A second generation human haplotype map of over 3.1 million SNPs. Nature doi:10.1038/nature06258 (this issue).
-
Nature
-
-
-
2
-
-
33745121154
-
Positive natural selection in the human lineage
-
Sabeti, P. C. et al. Positive natural selection in the human lineage. Science 312, 1614-1620 (2006).
-
(2006)
Science
, vol.312
, pp. 1614-1620
-
-
Sabeti, P.C.1
-
3
-
-
27644445076
-
Posttranslational modification of α-dystroglycan, the cellular receptor for arenaviruses, by the glycosyltransferase LARGE is critical for virus binding
-
Kunz, S. et al. Posttranslational modification of α-dystroglycan, the cellular receptor for arenaviruses, by the glycosyltransferase LARGE is critical for virus binding. J. Virol. 79, 14282-14296 (2005).
-
(2005)
J. Virol
, vol.79
, pp. 14282-14296
-
-
Kunz, S.1
-
4
-
-
14944367557
-
Single nucleotide polymorphisms in the MATP gene are associated with normal human pigmentation variation
-
Graf, J., Hodgson, R. & van Daal, A. Single nucleotide polymorphisms in the MATP gene are associated with normal human pigmentation variation. Hum. Mutat. 25, 278-284 (2005).
-
(2005)
Hum. Mutat
, vol.25
, pp. 278-284
-
-
Graf, J.1
Hodgson, R.2
van Daal, A.3
-
5
-
-
29144485743
-
SLC24A5, a putative cation exchanger, affects pigmentation in zebrafish and humans
-
Lamason, R. L. et al. SLC24A5, a putative cation exchanger, affects pigmentation in zebrafish and humans. Science 310, 1782-1786 (2005).
-
(2005)
Science
, vol.310
, pp. 1782-1786
-
-
Lamason, R.L.1
-
7
-
-
79959524146
-
A haplotype map of the human genome
-
The International Haplotype Map Consortium
-
The International Haplotype Map Consortium. A haplotype map of the human genome. Nature 437, 1299-1320 (2005).
-
(2005)
Nature
, vol.437
, pp. 1299-1320
-
-
-
8
-
-
0037167852
-
Detecting recent positive selection in the human genome from haplotype structure
-
Sabeti, P. C. et al. Detecting recent positive selection in the human genome from haplotype structure. Nature 419, 832-837 (2002).
-
(2002)
Nature
, vol.419
, pp. 832-837
-
-
Sabeti, P.C.1
-
9
-
-
33644981509
-
A map of recent positive selection in the human genome
-
Voight, B. F., Kudaravalli, S., Wen, X. & Pritchard, J. K. A map of recent positive selection in the human genome. PLoS Biol. 4, e72 (2006).
-
(2006)
PLoS Biol
, vol.4
-
-
Voight, B.F.1
Kudaravalli, S.2
Wen, X.3
Pritchard, J.K.4
-
10
-
-
55849095847
-
A practical genome scan for population-specific strong selective sweeps that have reached fixation
-
Kimura, R., Fujimoto, A., Tokunaga, K. & Ohashi, J. A practical genome scan for population-specific strong selective sweeps that have reached fixation. PLoS ONE 2, e286 (2007).
-
(2007)
PLoS ONE
, vol.2
-
-
Kimura, R.1
Fujimoto, A.2
Tokunaga, K.3
Ohashi, J.4
-
11
-
-
34547110828
-
A new approach for using genome scans to detect recent positive selection in the human genome
-
Tang, K., Thornton, K. R. & Stoneking, M. A new approach for using genome scans to detect recent positive selection in the human genome. PLoS Biol. 5, e171 (2007).
-
(2007)
PLoS Biol
, vol.5
-
-
Tang, K.1
Thornton, K.R.2
Stoneking, M.3
-
12
-
-
34347336584
-
Localizing recent adaptive evolution in the human genome
-
Williamson, S. H. et al. Localizing recent adaptive evolution in the human genome. PLoS Genet. 3, e90 (2007).
-
(2007)
PLoS Genet
, vol.3
-
-
Williamson, S.H.1
-
13
-
-
2442677652
-
Genetic signatures of strong recent positive selection at the lactase gene
-
Bersaglieri, T. et al. Genetic signatures of strong recent positive selection at the lactase gene. Am. J. Hum. Genet. 74, 1111-1120 (2004).
-
(2004)
Am. J. Hum. Genet
, vol.74
, pp. 1111-1120
-
-
Bersaglieri, T.1
-
14
-
-
33744815615
-
How reliable are empirical genomic scans for selective sweeps?
-
702-712
-
Teshima, K. M., Coop, G. & Przeworski, M. How reliable are empirical genomic scans for selective sweeps? 16, 702-712 Genome Res. (2006).
-
(2006)
Genome Res
, vol.16
-
-
Teshima, K.M.1
Coop, G.2
Przeworski, M.3
-
15
-
-
0038476614
-
Transcriptional regulation of the lactase-phlorizin hydrolase gene by polymorphisms associated with adult-type hypolactasia
-
Kuokkanen, M. et al. Transcriptional regulation of the lactase-phlorizin hydrolase gene by polymorphisms associated with adult-type hypolactasia. Gut 52, 647-652 (2003).
-
(2003)
Gut
, vol.52
, pp. 647-652
-
-
Kuokkanen, M.1
-
17
-
-
28944447769
-
Evidence for recent positive selection at the human AIM1 locus in a European population
-
Soejima, M., Tachida, H., Ishida, T., Sano, A. & Koda, Y. Evidence for recent positive selection at the human AIM1 locus in a European population. Mol. Biol. Evol. 23, 179-188 (2006).
-
(2006)
Mol. Biol. Evol
, vol.23
, pp. 179-188
-
-
Soejima, M.1
Tachida, H.2
Ishida, T.3
Sano, A.4
Koda, Y.5
-
18
-
-
0344393484
-
Lassa fever: Epidemiology, clinical features, and social consequences
-
Richmond, J. K. & Baglole, D. J. Lassa fever: epidemiology, clinical features, and social consequences. Br. Med. J. 327, 1271-1275 (2003).
-
(2003)
Br. Med. J
, vol.327
, pp. 1271-1275
-
-
Richmond, J.K.1
Baglole, D.J.2
-
19
-
-
20144371089
-
Widespread parallel evolution in sticklebacks by repeated fixation of Ectodysplasin alleles
-
Colosimo, P. F. et al. Widespread parallel evolution in sticklebacks by repeated fixation of Ectodysplasin alleles. Science 307, 1928-1933 (2005).
-
(2005)
Science
, vol.307
, pp. 1928-1933
-
-
Colosimo, P.F.1
-
20
-
-
0037147189
-
Genetic structure of human populations
-
Rosenberg, N. A. et al. Genetic structure of human populations. Science 298, 2381-2385 (2002).
-
(2002)
Science
, vol.298
, pp. 2381-2385
-
-
Rosenberg, N.A.1
-
21
-
-
33645225908
-
Mutations in EDAR account for one-quarter of non-ED1-related hypohidrotic ectodermal dysplasia
-
Chassaing, N., Bourthoumieu, S., Cossee, M., Calvas, P. & Vincent, M. C. Mutations in EDAR account for one-quarter of non-ED1-related hypohidrotic ectodermal dysplasia. Hum. Mutat. 27, 255-259 (2006).
-
(2006)
Hum. Mutat
, vol.27
, pp. 255-259
-
-
Chassaing, N.1
Bourthoumieu, S.2
Cossee, M.3
Calvas, P.4
Vincent, M.C.5
-
22
-
-
0033873929
-
Comparative protein structure modeling of genes and genomes
-
Marti-Renom, M. A. et al. Comparative protein structure modeling of genes and genomes. Annu. Rev. Biophys. Biomol. Struct. 29, 291-325 (2000).
-
(2000)
Annu. Rev. Biophys. Biomol. Struct
, vol.29
, pp. 291-325
-
-
Marti-Renom, M.A.1
-
23
-
-
23144448512
-
ConSurf 2005: The projection of evolutionary conservation scores of residues on protein structures
-
Landau, M. et al. ConSurf 2005: the projection of evolutionary conservation scores of residues on protein structures. Nucleic Acids Res. 33, W299-W302 (2005).
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Landau, M.1
-
24
-
-
0033601077
-
Three-dimensional structure of a complex between the death domains of Pelle and Tube
-
Xiao, T., Towb, P., Wasserman, S. A. & Sprang, S. R. Three-dimensional structure of a complex between the death domains of Pelle and Tube. Cell 99, 545-555 (1999).
-
(1999)
Cell
, vol.99
, pp. 545-555
-
-
Xiao, T.1
Towb, P.2
Wasserman, S.A.3
Sprang, S.R.4
-
25
-
-
0035071957
-
A new statistical method for haplotype reconstruction from population data
-
Stephens, M., Smith, N. J. & Donnelly, P. A new statistical method for haplotype reconstruction from population data. Am. J. Hum. Genet. 68, 978-989 (2001).
-
(2001)
Am. J. Hum. Genet
, vol.68
, pp. 978-989
-
-
Stephens, M.1
Smith, N.J.2
Donnelly, P.3
-
26
-
-
3042700117
-
Evidence for substantial fine-scale variation in recombination rates across the human genome
-
Crawford, D. C. et al. Evidence for substantial fine-scale variation in recombination rates across the human genome. Nature Genet. 36, 700-706 (2004).
-
(2004)
Nature Genet
, vol.36
, pp. 700-706
-
-
Crawford, D.C.1
-
27
-
-
27544497650
-
Calibrating a coalescent simulation of human genome sequence variation
-
Schaffner, S. F. et al. Calibrating a coalescent simulation of human genome sequence variation. Genome Res. 15, 1576-1583 (2005).
-
(2005)
Genome Res
, vol.15
, pp. 1576-1583
-
-
Schaffner, S.F.1
-
28
-
-
0034622940
-
The three-dimensional solution structure and dynamic properties of the human FADD death domain
-
Berglund, H. et al. The three-dimensional solution structure and dynamic properties of the human FADD death domain. J. Mol. Biol. 302, 171-188 (2000).
-
(2000)
J. Mol. Biol
, vol.302
, pp. 171-188
-
-
Berglund, H.1
-
29
-
-
0030465072
-
NMR structure and mutagenesis of the Fas (APO-1/CD95) death domain
-
Huang, B., Eberstadt, M., Olejniczak, E. T., Meadows, R. P. & Fesik, S. W. NMR structure and mutagenesis of the Fas (APO-1/CD95) death domain. Nature 384, 638-641 (1996).
-
(1996)
Nature
, vol.384
, pp. 638-641
-
-
Huang, B.1
Eberstadt, M.2
Olejniczak, E.T.3
Meadows, R.P.4
Fesik, S.W.5
-
30
-
-
25444503240
-
Cutting edge: Molecular structure of the IL-1R-associated kinase-4 death domain and its implications for TLR signaling
-
Lasker, M. V., Gajjar, M. M. & Nair, S. K. Cutting edge: molecular structure of the IL-1R-associated kinase-4 death domain and its implications for TLR signaling. J. Immunol. 175, 4175-4179 (2005).
-
(2005)
J. Immunol
, vol.175
, pp. 4175-4179
-
-
Lasker, M.V.1
Gajjar, M.M.2
Nair, S.K.3
-
31
-
-
0030851905
-
NMR structure of the death domain of the p75 neurotrophin receptor
-
Liepinsh, E., Ilag, L. L., Otting, G. & Ibanez, C. F. NMR structure of the death domain of the p75 neurotrophin receptor. EMBO J. 16, 4999-5005 (1997).
-
(1997)
EMBO J
, vol.16
, pp. 4999-5005
-
-
Liepinsh, E.1
Ilag, L.L.2
Otting, G.3
Ibanez, C.F.4
-
32
-
-
33344467158
-
Crystal structure of RAIDD death domain implicates potential mechanism of PIDDosome assembly
-
Park, H. H. & Wu, H. Crystal structure of RAIDD death domain implicates potential mechanism of PIDDosome assembly. J. Mol. Biol. 357, 358-364 (2006).
-
(2006)
J. Mol. Biol
, vol.357
, pp. 358-364
-
-
Park, H.H.1
Wu, H.2
-
33
-
-
1842559320
-
Alignment of protein sequences by their profiles
-
Marti-Renom, M. A., Madhusudhan, M. S. & Sali, A. Alignment of protein sequences by their profiles. Protein Sci. 13, 1071-1087 (2004).
-
(2004)
Protein Sci
, vol.13
, pp. 1071-1087
-
-
Marti-Renom, M.A.1
Madhusudhan, M.S.2
Sali, A.3
-
34
-
-
0030501419
-
Use of non-crystallographic symmetry in protein structure refinement
-
Kleywegt, G. J. Use of non-crystallographic symmetry in protein structure refinement. Acta Crystallogr. D 52, 842-857 (1996).
-
(1996)
Acta Crystallogr. D
, vol.52
, pp. 842-857
-
-
Kleywegt, G.J.1
|