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Volumn 7, Issue 5, 2015, Pages 1313-1328

Ecological overlap and horizontal gene transfer in Staphylococcus aureus and Staphylococcus epidermidis

(21)  Méric, Guillaume a   Miragaia, Maria b   De Been, Mark c   Yahara, Koji a,d   Pascoe, Ben a   Mageiros, Leonardos a   Mikhail, Jane a   Harris, Llinos G a   Wilkinson, Thomas S a   Rolo, Joana b   Lamble, Sarah e   Bray, James E f   Jolley, Keith A f   Hanage, William P g   Bowden, Rory e   Maiden, Martin C J f   Mack, Dietrich a,h   De Lencastre, Hermínia b,i   Feil, Edward J j   Corander, Jukka k   more..


Author keywords

Ecology; Evolution; Nosocomial infections; Recombination; Staphylococcus

Indexed keywords

ENVIRONMENTAL ASPECTS AND RELATED PHENOMENA; FUNGAL GENE; FUNGAL GENOME; GENETIC VARIABILITY; GENETICS; HOMOLOGOUS RECOMBINATION; HORIZONTAL GENE TRANSFER; MOLECULAR EVOLUTION; STAPHYLOCOCCUS AUREUS; STAPHYLOCOCCUS EPIDERMIDIS;

EID: 84942321996     PISSN: None     EISSN: 17596653     Source Type: Journal    
DOI: 10.1093/gbe/evv066     Document Type: Article
Times cited : (102)

References (89)
  • 1
    • 77955233623 scopus 로고    scopus 로고
    • Transposases are the most abundant, most ubiquitous genes in nature
    • Aziz RK, Breitbart M, Edwards RA. 2010. Transposases are the most abundant, most ubiquitous genes in nature. Nucleic Acids Res. 38:4207-4217.
    • (2010) Nucleic Acids Res. , vol.38 , pp. 4207-4217
    • Aziz, R.K.1    Breitbart, M.2    Edwards, R.A.3
  • 2
    • 40549120596 scopus 로고    scopus 로고
    • The RAST Server: Rapid annotations using subsystems technology
    • Aziz RK, et al. 2008. The RAST Server: rapid annotations using subsystems technology. BMC Genomics 9:75.
    • (2008) BMC Genomics , vol.9 , pp. 75
    • Aziz, R.K.1
  • 3
    • 84880712059 scopus 로고    scopus 로고
    • Exploring the costs of horizontal gene transfer
    • Baltrus DA. 2013. Exploring the costs of horizontal gene transfer. Trends Ecol Evol. 28:489-495.
    • (2013) Trends Ecol Evol. , vol.28 , pp. 489-495
    • Baltrus, D.A.1
  • 4
    • 0021674381 scopus 로고
    • Bacterial transposon Tn5: Evolutionary inferences
    • Berg DE, Berg CM, Sasakawa C. 1984. Bacterial transposon Tn5: evolutionary inferences. Mol Biol Evol. 1:411-422.
    • (1984) Mol Biol Evol. , vol.1 , pp. 411-422
    • Berg, D.E.1    Berg, C.M.2    Sasakawa, C.3
  • 5
    • 79960408082 scopus 로고    scopus 로고
    • Lateral transfer of genes and gene fragments in Staphylococcus extends beyond mobile elements
    • Chan CX, Beiko RG, Ragan MA. 2011. Lateral transfer of genes and gene fragments in Staphylococcus extends beyond mobile elements. J Bacteriol. 193:3964-3977.
    • (2011) J Bacteriol. , vol.193 , pp. 3964-3977
    • Chan, C.X.1    Beiko, R.G.2    Ragan, M.A.3
  • 6
    • 84876526192 scopus 로고    scopus 로고
    • Hierarchical and spatially explicit clustering of DNA sequences with BAPS software
    • Cheng L, Connor TR, Siren J, Aanensen DM, Corander J. 2013. Hierarchical and spatially explicit clustering of DNA sequences with BAPS software. Mol Biol Evol. 30:1224-1228.
    • (2013) Mol Biol Evol. , vol.30 , pp. 1224-1228
    • Cheng, L.1    Connor, T.R.2    Siren, J.3    Aanensen, D.M.4    Corander, J.5
  • 7
    • 84903819643 scopus 로고    scopus 로고
    • The Staphylococcal Cassette Chromosome mec type V from Staphylococcus aureus ST398 is packaged into bacteriophage capsids
    • Chlebowicz MA, et al. 2014. The Staphylococcal Cassette Chromosome mec type V from Staphylococcus aureus ST398 is packaged into bacteriophage capsids. Int J Med Microbiol. 304:764-774.
    • (2014) Int J Med Microbiol. , vol.304 , pp. 764-774
    • Chlebowicz, M.A.1
  • 8
    • 84871029413 scopus 로고    scopus 로고
    • Staphylococcus epidermidis pan-genome sequence analysis reveals diversity of skin commensal and hospital infection-associated isolates
    • Conlan S, et al. 2012. Staphylococcus epidermidis pan-genome sequence analysis reveals diversity of skin commensal and hospital infection-associated isolates. Genome Biol. 13:R64.
    • (2012) Genome Biol. , vol.13 , pp. R64
    • Conlan, S.1
  • 9
    • 84890547166 scopus 로고    scopus 로고
    • Recent recombination events in the core genome are associated with adaptive evolution in Enterococcus faecium
    • De Been M, Van Schaik W, Cheng L, Corander J, Willems RJ. 2013. Recent recombination events in the core genome are associated with adaptive evolution in Enterococcus faecium. Genome Biol Evol. 5:1524-1535.
    • (2013) Genome Biol Evol. , vol.5 , pp. 1524-1535
    • De Been, M.1    Van Schaik, W.2    Cheng, L.3    Corander, J.4    Willems, R.J.5
  • 10
    • 80055031553 scopus 로고    scopus 로고
    • Mortality and hospital stay associated with resistant Staphylococcus aureus and Escherichia coli bacteremia: Estimating the burden of antibiotic resistance in Europe
    • De Kraker ME, Davey PG, Grundmann H. 2011. Mortality and hospital stay associated with resistant Staphylococcus aureus and Escherichia coli bacteremia: estimating the burden of antibiotic resistance in Europe. PLoS Med. 8:e1001104.
    • (2011) PLoS Med. , vol.8 , pp. e1001104
    • De Kraker, M.E.1    Davey, P.G.2    Grundmann, H.3
  • 11
    • 34447554517 scopus 로고    scopus 로고
    • The challenge of treating biofilm-associated bacterial infections
    • Del Pozo JL, Patel R. 2007. The challenge of treating biofilm-associated bacterial infections. Clin Pharmacol Ther. 82:204-209.
    • (2007) Clin Pharmacol Ther. , vol.82 , pp. 204-209
    • Del Pozo, J.L.1    Patel, R.2
  • 12
    • 84880528485 scopus 로고    scopus 로고
    • Automated genome annotation and metabolic model reconstruction in the SEED and Model SEED
    • Devoid S, et al. 2013. Automated genome annotation and metabolic model reconstruction in the SEED and Model SEED. Methods Mol Biol. 985:17-45.
    • (2013) Methods Mol Biol. , vol.985 , pp. 17-45
    • Devoid, S.1
  • 13
    • 77954143123 scopus 로고    scopus 로고
    • Impact of recombination on bacterial evolution
    • Didelot X, Maiden MC. 2010. Impact of recombination on bacterial evolution. Trends Microbiol. 18:315-322.
    • (2010) Trends Microbiol. , vol.18 , pp. 315-322
    • Didelot, X.1    Maiden, M.C.2
  • 14
    • 33644659999 scopus 로고    scopus 로고
    • Complete genome sequence of USA300, an epidemic clone of community-acquired meticillin-resistant Staphylococcus aureus
    • Diep BA, et al. 2006. Complete genome sequence of USA300, an epidemic clone of community-acquired meticillin-resistant Staphylococcus aureus. The Lancet 367:731-739.
    • (2006) The Lancet , vol.367 , pp. 731-739
    • Diep, B.A.1
  • 15
    • 0028146751 scopus 로고
    • Spread and maintenance of a dominant methicillin-resistant Staphylococcus aureus (MRSA) clone during an outbreak of MRSA disease in a Spanish hospital
    • Dominguez MA, De Lencastre H, Linares J, Tomasz A. 1994. Spread and maintenance of a dominant methicillin-resistant Staphylococcus aureus (MRSA) clone during an outbreak of MRSA disease in a Spanish hospital. J Clin Microbiol. 32:2081-2087.
    • (1994) J Clin Microbiol. , vol.32 , pp. 2081-2087
    • Dominguez, M.A.1    De Lencastre, H.2    Linares, J.3    Tomasz, A.4
  • 16
    • 77953058338 scopus 로고    scopus 로고
    • DnaSAM: Software to perform neutrality testing for large datasets with complex null models
    • Eckert AJ, Liechty JD, Tearse BR, Pande B, Neale DB. 2010. DnaSAM: Software to perform neutrality testing for large datasets with complex null models. Mol Ecol Resour. 10:542-545.
    • (2010) Mol Ecol Resour. , vol.10 , pp. 542-545
    • Eckert, A.J.1    Liechty, J.D.2    Tearse, B.R.3    Pande, B.4    Neale, D.B.5
  • 17
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: Multiple sequence alignment with high accuracy and high throughput
    • Edgar RC. 2004. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32:1792-1797.
    • (2004) Nucleic Acids Res. , vol.32 , pp. 1792-1797
    • Edgar, R.C.1
  • 18
    • 0031470610 scopus 로고    scopus 로고
    • Recombination initiation: Easy as A, B, C, D... chi?
    • Eggleston AK, West SC. 1997. Recombination initiation: easy as A, B, C, D... chi? Curr Biol. 7:R745-R749.
    • (1997) Curr Biol. , vol.7 , pp. R745-R749
    • Eggleston, A.K.1    West, S.C.2
  • 19
    • 84901447320 scopus 로고    scopus 로고
    • Mobile elements drive recombination hotspots in the core genome of Staphylococcus aureus
    • Everitt RG, et al. 2014. Mobile elements drive recombination hotspots in the core genome of Staphylococcus aureus. Nat Commun. 5:3956.
    • (2014) Nat Commun. , vol.5 , pp. 3956
    • Everitt, R.G.1
  • 20
    • 0033865030 scopus 로고    scopus 로고
    • Estimating the relative contributions of mutation and recombination to clonal diversification: A comparison between Neisseria meningitidis and Streptococcus pneumoniae
    • Feil EJ, Enright MC, Spratt BG. 2000. Estimating the relative contributions of mutation and recombination to clonal diversification: a comparison between Neisseria meningitidis and Streptococcus pneumoniae. Res Microbiol. 151:465-469.
    • (2000) Res Microbiol. , vol.151 , pp. 465-469
    • Feil, E.J.1    Enright, M.C.2    Spratt, B.G.3
  • 21
    • 0037853350 scopus 로고    scopus 로고
    • How clonal is Staphylococcus aureus?
    • Feil EJ, et al. 2003. How clonal is Staphylococcus aureus? J Bacteriol. 185 3307-3316.
    • (2003) J Bacteriol. , vol.185 , pp. 3307-3316
    • Feil, E.J.1
  • 22
    • 1342304133 scopus 로고    scopus 로고
    • eBURST: Inferring patterns of evolutionary descent among clusters of related bacterial genotypes from multilocus sequence typing data
    • Feil EJ, Li BC, Aanensen DM, Hanage WP, Spratt BG. 2004. eBURST: inferring patterns of evolutionary descent among clusters of related bacterial genotypes from multilocus sequence typing data. J Bacteriol. 186:1518-1530.
    • (2004) J Bacteriol. , vol.186 , pp. 1518-1530
    • Feil, E.J.1    Li, B.C.2    Aanensen, D.M.3    Hanage, W.P.4    Spratt, B.G.5
  • 23
    • 0020687255 scopus 로고
    • Transfer of resistance plasmids from Staphylococcus epidermidis to Staphylococcus aureus: Evidence for conjugative exchange of resistance
    • Forbes BA, Schaberg DR. 1983. Transfer of resistance plasmids from Staphylococcus epidermidis to Staphylococcus aureus: evidence for conjugative exchange of resistance. J Bacteriol. 153:627-634.
    • (1983) J Bacteriol. , vol.153 , pp. 627-634
    • Forbes, B.A.1    Schaberg, D.R.2
  • 24
    • 0036021697 scopus 로고    scopus 로고
    • Genome deterioration: Loss of repeated sequences and accumulation of junk DNA
    • Frank AC, Amiri H, Andersson SG. 2002. Genome deterioration: loss of repeated sequences and accumulation of junk DNA. Genetica 115:1-12.
    • (2002) Genetica , vol.115 , pp. 1-12
    • Frank, A.C.1    Amiri, H.2    Andersson, S.G.3
  • 25
    • 77956540291 scopus 로고    scopus 로고
    • The human nasal microbiota and Staphylococcus aureus carriage
    • Frank DN, et al. 2010. The human nasal microbiota and Staphylococcus aureus carriage. PLoS One 5:e10598.
    • (2010) PLoS One , vol.5 , pp. e10598
    • Frank, D.N.1
  • 26
    • 59849086092 scopus 로고    scopus 로고
    • The bacterial species challenge: Making sense of genetic and ecological diversity
    • Fraser C, Alm EJ, Polz MF, Spratt BG, Hanage WP. 2009. The bacterial species challenge: making sense of genetic and ecological diversity. Science 323:741-746.
    • (2009) Science , vol.323 , pp. 741-746
    • Fraser, C.1    Alm, E.J.2    Polz, M.F.3    Spratt, B.G.4    Hanage, W.P.5
  • 27
    • 33846625056 scopus 로고    scopus 로고
    • Recombination and the nature of bacterial speciation
    • Fraser C, Hanage WP, Spratt BG. 2007. Recombination and the nature of bacterial speciation. Science 315:476-480.
    • (2007) Science , vol.315 , pp. 476-480
    • Fraser, C.1    Hanage, W.P.2    Spratt, B.G.3
  • 29
    • 20144372744 scopus 로고    scopus 로고
    • Insights on evolution of virulence and resistance from the complete genome analysis of an early methicillin-resistant Staphylococcus aureus strain and a biofilm-producing methicillinresistant Staphylococcus epidermidis strain
    • Gill SR, et al. 2005. Insights on evolution of virulence and resistance from the complete genome analysis of an early methicillin-resistant Staphylococcus aureus strain and a biofilm-producing methicillinresistant Staphylococcus epidermidis strain. J Bacteriol. 187:2426-2438.
    • (2005) J Bacteriol. , vol.187 , pp. 2426-2438
    • Gill, S.R.1
  • 30
    • 84877034258 scopus 로고    scopus 로고
    • Within-host evolution of Staphylococcus aureus during asymptomatic carriage
    • Golubchik T, et al. 2013. Within-host evolution of Staphylococcus aureus during asymptomatic carriage. PLoS One 8:e61319.
    • (2013) PLoS One , vol.8 , pp. e61319
    • Golubchik, T.1
  • 32
    • 0346731288 scopus 로고    scopus 로고
    • Local variants of Staphylococcal cassette chromosome mec in sporadic methicillin-resistant Staphylococcus aureus and methicillin-resistant coagulase-negative Staphylococci: Evidence of horizontal gene transfer?
    • Hanssen AM, Kjeldsen G, Sollid JU. 2004. Local variants of Staphylococcal cassette chromosome mec in sporadic methicillin-resistant Staphylococcus aureus and methicillin-resistant coagulase-negative Staphylococci: evidence of horizontal gene transfer? Antimicrob Agents Chemother. 48 285-296.
    • (2004) Antimicrob Agents Chemother. , vol.48 , pp. 285-296
    • Hanssen, A.M.1    Kjeldsen, G.2    Sollid, J.U.3
  • 33
    • 0029750222 scopus 로고    scopus 로고
    • A comparison of methods to determine whether clinical isolates of Staphylococcus epidermidis from the same patient are related
    • Hedin G. 1996. A comparison of methods to determine whether clinical isolates of Staphylococcus epidermidis from the same patient are related. J Hosp Infect. 34:31-42.
    • (1996) J Hosp Infect. , vol.34 , pp. 31-42
    • Hedin, G.1
  • 34
    • 0035477673 scopus 로고    scopus 로고
    • The emergence and evolution of methicillin-resistant Staphylococcus aureus
    • Hiramatsu K, Cui L, Kuroda M, Ito T. 2001. The emergence and evolution of methicillin-resistant Staphylococcus aureus. Trends Microbiol. 9:486-493.
    • (2001) Trends Microbiol. , vol.9 , pp. 486-493
    • Hiramatsu, K.1    Cui, L.2    Kuroda, M.3    Ito, T.4
  • 35
    • 3042718925 scopus 로고    scopus 로고
    • Complete genomes of two clinical Staphylococcus aureus strains: Evidence for the rapid evolution of virulence and drug resistance
    • Holden MT, et al. 2004. Complete genomes of two clinical Staphylococcus aureus strains: evidence for the rapid evolution of virulence and drug resistance. Proc Natl Acad Sci USA. 101:9786-9791.
    • (2004) Proc Natl Acad Sci U S A , vol.101 , pp. 9786-9791
    • Holden, M.T.1
  • 36
    • 75149126472 scopus 로고    scopus 로고
    • Genome sequence of a recently emerged, highly transmissible, multi-antibiotic- and antiseptic-resistant variant of methicillin-resistant Staphylococcus aureus, sequence type 239 (TW)
    • Holden MT, et al. 2010. Genome sequence of a recently emerged, highly transmissible, multi-antibiotic- and antiseptic-resistant variant of methicillin-resistant Staphylococcus aureus, sequence type 239 (TW). J Bacteriol. 192:888-892.
    • (2010) J Bacteriol. , vol.192 , pp. 888-892
    • Holden, M.T.1
  • 38
    • 29444456637 scopus 로고    scopus 로고
    • In vivo transfer of high-level mupirocin resistance from Staphylococcus epidermidis to methicillin-resistant Staphylococcus aureus associated with failure of mupirocin prophylaxis
    • Hurdle JG, O'Neill AJ, Mody L, Chopra I, Bradley SF. 2005. In vivo transfer of high-level mupirocin resistance from Staphylococcus epidermidis to methicillin-resistant Staphylococcus aureus associated with failure of mupirocin prophylaxis. J Antimicrob Chemother. 56:1166-1168.
    • (2005) J Antimicrob Chemother. , vol.56 , pp. 1166-1168
    • Hurdle, J.G.1    O'Neill, A.J.2    Mody, L.3    Chopra, I.4    Bradley, S.F.5
  • 39
    • 0001281379 scopus 로고
    • Homage to Santa Rosalia or why are there so many kinds of animals?
    • Hutchinson GE. 1959. Homage to Santa Rosalia or why are there so many kinds of animals? Am Nat 93:145-159.
    • (1959) Am Nat , vol.93 , pp. 145-159
    • Hutchinson, G.E.1
  • 41
    • 84965362242 scopus 로고
    • "Celbenin"-resistant Staphylococci
    • Jevons MP. 1961. "Celbenin"-resistant Staphylococci. Br Med J. 1:124-125.
    • (1961) Br Med J , vol.1 , pp. 124-125
    • Jevons, M.P.1
  • 42
    • 78650827616 scopus 로고    scopus 로고
    • BIGSdb: Scalable analysis of bacterial genome variation at the population level
    • Jolley KA, Maiden MC. 2010. BIGSdb: Scalable analysis of bacterial genome variation at the population level. BMC Bioinformatics 11:595.
    • (2010) BMC Bioinformatics , vol.11 , pp. 595
    • Jolley, K.A.1    Maiden, M.C.2
  • 43
    • 0019286483 scopus 로고
    • Natural populations of the genus Staphylococcus
    • Kloos WE. 1980. Natural populations of the genus Staphylococcus. Annu Rev Microbiol. 34:559-592.
    • (1980) Annu Rev Microbiol. , vol.34 , pp. 559-592
    • Kloos, W.E.1
  • 44
    • 0017238852 scopus 로고
    • Preliminary studies on the characterization and distribution of Staphylococcus and Micrococcus species on animal skin
    • Kloos WE, Zimmerman RJ, Smith RF. 1976. Preliminary studies on the characterization and distribution of Staphylococcus and Micrococcus species on animal skin. Appl Environ Microbiol. 31:53-59.
    • (1976) Appl Environ Microbiol. , vol.31 , pp. 53-59
    • Kloos, W.E.1    Zimmerman, R.J.2    Smith, R.F.3
  • 45
    • 84863442671 scopus 로고    scopus 로고
    • Comparative genomics of vancomycin-resistant Staphylococcus aureus strains and their positions within the clade most commonly associated with methicillin-resistant S aureus hospital-acquired infection in the United States
    • Kos VN, et al. 2012. Comparative genomics of vancomycin-resistant Staphylococcus aureus strains and their positions within the clade most commonly associated with methicillin-resistant S. aureus hospital-acquired infection in the United States. MBio 3.
    • (2012) MBio , pp. 3
    • Kos, V.N.1
  • 46
    • 30744457635 scopus 로고    scopus 로고
    • Microarrays reveal that each of the ten dominant lineages of Staphylococcus aureus has a unique combination of surface-associated and regulatory genes
    • Lindsay JA, et al. 2006. Microarrays reveal that each of the ten dominant lineages of Staphylococcus aureus has a unique combination of surface-associated and regulatory genes. J Bacteriol. 188:669-676.
    • (2006) J Bacteriol. , vol.188 , pp. 669-676
    • Lindsay, J.A.1
  • 47
    • 34047169728 scopus 로고    scopus 로고
    • Strain-resolved community proteomics reveals recombining genomes of acidophilic bacteria
    • Lo I, et al. 2007. Strain-resolved community proteomics reveals recombining genomes of acidophilic bacteria. Nature 446:537-541.
    • (2007) Nature , vol.446 , pp. 537-541
    • Lo, I.1
  • 48
    • 84901799453 scopus 로고    scopus 로고
    • Staphylococcus epidermidis in biomaterial-associated infections
    • Moriarty TF, editor, New York: Springer Science+Business Media
    • Mack D, et al. 2013. Staphylococcus epidermidis in biomaterial-associated infections. In: Moriarty TF, editor. Biomaterials associated infection: immunological aspects and antimicrobial strategies. New York: Springer Science+Business Media. p. 25-56.
    • (2013) Biomaterials Associated Infection: Immunological Aspects and Antimicrobial Strategies , pp. 25-56
    • Mack, D.1
  • 49
    • 84884290186 scopus 로고    scopus 로고
    • MLST revisited: The gene-by-gene approach to bacterial genomics
    • Maiden MC, et al. 2013. MLST revisited: the gene-by-gene approach to bacterial genomics. Nat Rev Microbiol. 11:728-736.
    • (2013) Nat Rev Microbiol. , vol.11 , pp. 728-736
    • Maiden, M.C.1
  • 50
    • 84855261123 scopus 로고    scopus 로고
    • Detection of recombination events in bacterial genomes from large population samples
    • Marttinen P, et al. 2012. Detection of recombination events in bacterial genomes from large population samples. Nucleic Acids Res. 40:e6.
    • (2012) Nucleic Acids Res. , vol.40 , pp. e6
    • Marttinen, P.1
  • 51
    • 84873292951 scopus 로고    scopus 로고
    • Bacteriophages of Staphylococcus aureus efficiently package various bacterial genes and mobile genetic elements including SCCmec with different frequencies
    • Maslanova I, et al. 2013. Bacteriophages of Staphylococcus aureus efficiently package various bacterial genes and mobile genetic elements including SCCmec with different frequencies. Environ Microbiol Rep. 5:66-73.
    • (2013) Environ Microbiol Rep. , vol.5 , pp. 66-73
    • Maslanova, I.1
  • 52
    • 34047262686 scopus 로고    scopus 로고
    • Comparison of multilocus sequence typing (MLST), pulsed-field gel electrophoresis (PFGE), and amplified fragment length polymorphism (AFLP) for genetic typing of Staphylococcus aureus
    • Melles DC, et al. 2007. Comparison of multilocus sequence typing (MLST), pulsed-field gel electrophoresis (PFGE), and amplified fragment length polymorphism (AFLP) for genetic typing of Staphylococcus aureus. J Microbiol Methods. 69:371-375.
    • (2007) J Microbiol Methods. , vol.69 , pp. 371-375
    • Melles, D.C.1
  • 53
    • 84899798143 scopus 로고    scopus 로고
    • A reference pan-genome approach to comparative bacterial genomics: Identification of novel epidemiological markers in pathogenic Campylobacter
    • Meric G, et al. 2014. A reference pan-genome approach to comparative bacterial genomics: identification of novel epidemiological markers in pathogenic Campylobacter. PLoS One 9:e92798.
    • (2014) PLoS One , vol.9 , pp. e92798
    • Meric, G.1
  • 54
    • 33947166709 scopus 로고    scopus 로고
    • Inferring a population structure for Staphylococcus epidermidis from multilocus sequence typing data
    • Miragaia M, Thomas JC, Couto I, Enright MC, De Lencastre H. 2007. Inferring a population structure for Staphylococcus epidermidis from multilocus sequence typing data. J Bacteriol. 189:2540-2552.
    • (2007) J Bacteriol. , vol.189 , pp. 2540-2552
    • Miragaia, M.1    Thomas, J.C.2    Couto, I.3    Enright, M.C.4    De Lencastre, H.5
  • 55
    • 8644224924 scopus 로고    scopus 로고
    • Genomic changes following host restriction in bacteria
    • Moran NA, Plague GR. 2004. Genomic changes following host restriction in bacteria. Curr Opin Genet Dev. 14:627-633.
    • (2004) Curr Opin Genet Dev. , vol.14 , pp. 627-633
    • Moran, N.A.1    Plague, G.R.2
  • 56
    • 65649147226 scopus 로고    scopus 로고
    • Staphylococcus aureus bacteremia: Epidemiology, pathophysiology, and management strategies
    • Naber CK. 2009. Staphylococcus aureus bacteremia: epidemiology, pathophysiology, and management strategies. Clin Infect Dis. 48(Suppl 4):S231-S237.
    • (2009) Clin Infect Dis. , vol.48 , pp. S231-S237
    • Naber, C.K.1
  • 57
    • 79151472877 scopus 로고    scopus 로고
    • Correlations between bacterial ecology and mobile DNA
    • Newton IL, Bordenstein SR. 2011. Correlations between bacterial ecology and mobile DNA. Curr Microbiol. 62:198-208.
    • (2011) Curr Microbiol. , vol.62 , pp. 198-208
    • Newton, I.L.1    Bordenstein, S.R.2
  • 58
    • 34249718889 scopus 로고    scopus 로고
    • The SaPIs: Mobile pathogenicity islands of Staphylococcus
    • Novick RP, Subedi A. 2007. The SaPIs: mobile pathogenicity islands of Staphylococcus. Chem Immunol Allergy. 93:42-57.
    • (2007) Chem Immunol Allergy , vol.93 , pp. 42-57
    • Novick, R.P.1    Subedi, A.2
  • 59
    • 0028697888 scopus 로고
    • The origin and evolution of species differences in Escherichia coli and Salmonella typhimurium
    • Ochman H, Groisman EA. 1994. The origin and evolution of species differences in Escherichia coli and Salmonella typhimurium. EXS 69:479-493.
    • (1994) EXS , vol.69 , pp. 479-493
    • Ochman, H.1    Groisman, E.A.2
  • 60
    • 67651246873 scopus 로고    scopus 로고
    • Staphylococcus epidermidis-the 'accidental' pathogen
    • Otto M. 2009. Staphylococcus epidermidis-the 'accidental' pathogen. Nat Rev Microbiol. 7:555-567.
    • (2009) Nat Rev Microbiol. , vol.7 , pp. 555-567
    • Otto, M.1
  • 61
    • 84891804612 scopus 로고    scopus 로고
    • The SEED and the rapid annotation of microbial genomes using subsystems technology (RAST)
    • Overbeek R, et al. 2014. The SEED and the rapid annotation of microbial genomes using subsystems technology (RAST). Nucleic Acids Res. 42:D206-D214.
    • (2014) Nucleic Acids Res. , vol.42 , pp. D206-D214
    • Overbeek, R.1
  • 63
    • 77949718257 scopus 로고    scopus 로고
    • FastTree 2-approximately maximum-likelihood trees for large alignments
    • Price MN, Dehal PS, Arkin AP. 2010. FastTree 2-approximately maximum-likelihood trees for large alignments. PLoS One 5:e9490.
    • (2010) PLoS One , vol.5 , pp. e9490
    • Price, M.N.1    Dehal, P.S.2    Arkin, A.P.3
  • 64
    • 78650305634 scopus 로고    scopus 로고
    • What traits are carried on mobile genetic elements, and why?
    • Rankin DJ, Rocha EP, Brown SP. 2011. What traits are carried on mobile genetic elements, and why? Heredity 106:1-10.
    • (2011) Heredity , vol.106 , pp. 1-10
    • Rankin, D.J.1    Rocha, E.P.2    Brown, S.P.3
  • 65
    • 1142286469 scopus 로고    scopus 로고
    • Evolution of Staphylococcus aureus by large chromosomal replacements
    • Robinson DA, Enright MC. 2004. Evolution of Staphylococcus aureus by large chromosomal replacements. J Bacteriol. 186:1060-1064.
    • (2004) J Bacteriol. , vol.186 , pp. 1060-1064
    • Robinson, D.A.1    Enright, M.C.2
  • 66
    • 84861120091 scopus 로고    scopus 로고
    • Strategies of adaptation of Staphylococcus epidermidis to hospital and community: Amplification and diversification of SCCmec
    • Rolo J, De Lencastre H, Miragaia M. 2012. Strategies of adaptation of Staphylococcus epidermidis to hospital and community: amplification and diversification of SCCmec. J Antimicrob Chemother. 67:1333-1341.
    • (2012) J Antimicrob Chemother. , vol.67 , pp. 1333-1341
    • Rolo, J.1    De Lencastre, H.2    Miragaia, M.3
  • 67
    • 69949090642 scopus 로고    scopus 로고
    • Comparisons between geographically diverse samples of carried Staphylococcus aureus
    • Ruimy R, et al. 2009. Comparisons between geographically diverse samples of carried Staphylococcus aureus. J Bacteriol. 191:5577-5583.
    • (2009) J Bacteriol. , vol.191 , pp. 5577-5583
    • Ruimy, R.1
  • 68
    • 80052758474 scopus 로고    scopus 로고
    • Staphylococcus aureus host range and humanbovine host shift
    • Sakwinska O, et al. 2011. Staphylococcus aureus host range and humanbovine host shift. Appl Environ Microbiol. 77:5908-5915.
    • (2011) Appl Environ Microbiol. , vol.77 , pp. 5908-5915
    • Sakwinska, O.1
  • 69
    • 79951548848 scopus 로고    scopus 로고
    • Phangorn: Phylogenetic analysis in R
    • Schliep KP. 2011. phangorn: phylogenetic analysis in R. Bioinformatics 27:592-593.
    • (2011) Bioinformatics , vol.27 , pp. 592-593
    • Schliep, K.P.1
  • 70
    • 84900837188 scopus 로고    scopus 로고
    • Cryptic ecology among host generalist Campylobacter jejuni in domestic animals
    • Sheppard SK, et al. 2014. Cryptic ecology among host generalist Campylobacter jejuni in domestic animals. Mol Ecol. 23:2442-2451.
    • (2014) Mol Ecol. , vol.23 , pp. 2442-2451
    • Sheppard, S.K.1
  • 71
    • 84863322057 scopus 로고    scopus 로고
    • A gene-by-gene approach to bacterial population genomics: Whole genome MLST of Campylobacter
    • Sheppard SK, Jolley KA, Maiden MCJ. 2012. A gene-by-gene approach to bacterial population genomics: whole genome MLST of Campylobacter. Genes 3:261-277.
    • (2012) Genes , vol.3 , pp. 261-277
    • Sheppard, S.K.1    Jolley, K.A.2    Maiden, M.C.J.3
  • 72
    • 42049090179 scopus 로고    scopus 로고
    • Convergence of Campylobacter species: Implications for bacterial evolution
    • Sheppard SK, McCarthy ND, Falush D, Maiden MC. 2008. Convergence of Campylobacter species: implications for bacterial evolution. Science 320:237-239.
    • (2008) Science , vol.320 , pp. 237-239
    • Sheppard, S.K.1    McCarthy, N.D.2    Falush, D.3    Maiden, M.C.4
  • 74
    • 84899553363 scopus 로고    scopus 로고
    • RAxML version 8: A tool for phylogenetic analysis and post-analysis of large phylogenies
    • Stamatakis A. 2014. RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics 30:1312-1313.
    • (2014) Bioinformatics , vol.30 , pp. 1312-1313
    • Stamatakis, A.1
  • 75
    • 84863417589 scopus 로고    scopus 로고
    • Comparative genomic analysis of the genus Staphylococcus including Staphylococcus aureus and its newly described sister species Staphylococcus simiae
    • Suzuki H, Lefebure T, Bitar PP, Stanhope MJ. 2012. Comparative genomic analysis of the genus Staphylococcus including Staphylococcus aureus and its newly described sister species Staphylococcus simiae. BMC Genomics 13:38.
    • (2012) BMC Genomics , vol.13 , pp. 38
    • Suzuki, H.1    Lefebure, T.2    Bitar, P.P.3    Stanhope, M.J.4
  • 76
    • 0024313579 scopus 로고
    • Statistical method for testing the neutral mutation hypothesis by DNA polymorphism
    • Tajima F. 1989. Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123:585-595.
    • (1989) Genetics , vol.123 , pp. 585-595
    • Tajima, F.1
  • 78
    • 84896689828 scopus 로고    scopus 로고
    • Differing lifestyles of Staphylococcus epidermidis as revealed through Bayesian clustering of multilocus sequence types
    • Thomas JC, Zhang L, Robinson DA. 2014. Differing lifestyles of Staphylococcus epidermidis as revealed through Bayesian clustering of multilocus sequence types. Infect Genet Evol. 22:257-264.
    • (2014) Infect Genet Evol. , vol.22 , pp. 257-264
    • Thomas, J.C.1    Zhang, L.2    Robinson, D.A.3
  • 79
    • 59249089471 scopus 로고    scopus 로고
    • Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths
    • Touchon M, et al. 2009. Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths. PLoS Genet. 5:e1000344.
    • (2009) PLoS Genet. , vol.5 , pp. e1000344
    • Touchon, M.1
  • 80
    • 84906942099 scopus 로고    scopus 로고
    • Intragenus generalized transduction in Staphylococcus spp. by a novel giant phage
    • Uchiyama J, et al. 2014. Intragenus generalized transduction in Staphylococcus spp. by a novel giant phage. ISME J. 8:1949-1952.
    • (2014) ISME J , vol.8 , pp. 1949-1952
    • Uchiyama, J.1
  • 81
    • 33845952432 scopus 로고    scopus 로고
    • Polyclonality of Staphylococcus epidermidis residing on the healthy ocular surface
    • Ueta M, et al. 2007. Polyclonality of Staphylococcus epidermidis residing on the healthy ocular surface. J Med Microbiol. 56:77-82.
    • (2007) J Med Microbiol. , vol.56 , pp. 77-82
    • Ueta, M.1
  • 82
    • 57549093803 scopus 로고    scopus 로고
    • Co-evolutionary aspects of human colonisation and infection by Staphylococcus aureus
    • Van Belkum A, et al. 2009. Co-evolutionary aspects of human colonisation and infection by Staphylococcus aureus. Infect Genet Evol. 9:32-47.
    • (2009) Infect Genet Evol. , vol.9 , pp. 32-47
    • Van Belkum, A.1
  • 84
    • 58549084151 scopus 로고    scopus 로고
    • A comparison of homologous recombination rates in bacteria and archaea
    • Vos M, Didelot X. 2009. A comparison of homologous recombination rates in bacteria and archaea. ISME J. 3:199-208.
    • (2009) ISME J , vol.3 , pp. 199-208
    • Vos, M.1    Didelot, X.2
  • 85
    • 0016491430 scopus 로고
    • On the number of segregating sites in genetical models without recombination
    • Watterson GA. 1975. On the number of segregating sites in genetical models without recombination. Theor Popul Biol. 7:256-276.
    • (1975) Theor Popul Biol. , vol.7 , pp. 256-276
    • Watterson, G.A.1
  • 86
    • 44449099612 scopus 로고    scopus 로고
    • Differential roles of sortase-anchored surface proteins and wall teichoic acid in Staphylococcus aureus nasal colonization
    • Weidenmaier C, et al. 2008. Differential roles of sortase-anchored surface proteins and wall teichoic acid in Staphylococcus aureus nasal colonization. Int J Med Microbiol. 298:505-513.
    • (2008) Int J Med Microbiol. , vol.298 , pp. 505-513
    • Weidenmaier, C.1
  • 87
    • 79960961566 scopus 로고    scopus 로고
    • Origins of bacterial diversity through horizontal genetic transfer and adaptation to new ecological niches
    • Wiedenbeck J, Cohan FM. 2011. Origins of bacterial diversity through horizontal genetic transfer and adaptation to new ecological niches. FEMS Microbiol Rev. 35:957-976.
    • (2011) FEMS Microbiol Rev. , vol.35 , pp. 957-976
    • Wiedenbeck, J.1    Cohan, F.M.2
  • 88
    • 0242322585 scopus 로고    scopus 로고
    • Related clones containing SCCmec type IV predominate among clinically significant Staphylococcus epidermidis isolates
    • Wisplinghoff H, et al. 2003. Related clones containing SCCmec type IV predominate among clinically significant Staphylococcus epidermidis isolates. Antimicrob Agents Chemother. 47:3574-3579.
    • (2003) Antimicrob Agents Chemother. , vol.47 , pp. 3574-3579
    • Wisplinghoff, H.1
  • 89
    • 43149115851 scopus 로고    scopus 로고
    • Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
    • Zerbino DR, Birney E. 2008. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 18:821-829.
    • (2008) Genome Res. , vol.18 , pp. 821-829
    • Zerbino, D.R.1    Birney, E.2


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