-
1
-
-
36749028160
-
Multiple recombinant dengue type 1 viruses in an isolate from a dengue patient
-
Aaskov, J., K. Buzacott, E. Field, K. Lowry, A. Berlioz-Arthaud, and E. C. Holmes. 2007. Multiple recombinant dengue type 1 viruses in an isolate from a dengue patient. J. Gen. Virol. 88:3334-3340.
-
(2007)
J. Gen. Virol
, vol.88
, pp. 3334-3340
-
-
Aaskov, J.1
Buzacott, K.2
Field, E.3
Lowry, K.4
Berlioz-Arthaud, A.5
Holmes, E.C.6
-
2
-
-
34547730145
-
Influenza virus susceptibility and resistance to oseltamivir
-
Aoki, F. Y., G. Boivin, and N. Roberts. 2007. Influenza virus susceptibility and resistance to oseltamivir. Antivir. Ther. 12:603-616.
-
(2007)
Antivir. Ther
, vol.12
, pp. 603-616
-
-
Aoki, F.Y.1
Boivin, G.2
Roberts, N.3
-
3
-
-
0026464671
-
Transfection-mediated recombination of influenza A virus
-
Bergmann, M., A. Garcia-Sastre, and P. Palese. 1992. Transfection-mediated recombination of influenza A virus. J. Virol. 66:7576-7580.
-
(1992)
J. Virol
, vol.66
, pp. 7576-7580
-
-
Bergmann, M.1
Garcia-Sastre, A.2
Palese, P.3
-
4
-
-
34250757252
-
An exact nonparametric method for inferring mosaic structure in sequence triplets
-
Boni, M. F., D. Posada, and M. W. Feldman. 2007. An exact nonparametric method for inferring mosaic structure in sequence triplets. Genetics 176:1035-1047.
-
(2007)
Genetics
, vol.176
, pp. 1035-1047
-
-
Boni, M.F.1
Posada, D.2
Feldman, M.W.3
-
5
-
-
0020629723
-
Antigenic drift in influenza virus H3 hemagglutinin from 1968 to 1980: Multiple evolutionary pathways and sequential amino acid changes at key antigenic sites
-
Both, G. W., M. J. Sleigh, N. J. Cox, and A. P. Kendal. 1983. Antigenic drift in influenza virus H3 hemagglutinin from 1968 to 1980: multiple evolutionary pathways and sequential amino acid changes at key antigenic sites. J. Virol. 48:52-60.
-
(1983)
J. Virol
, vol.48
, pp. 52-60
-
-
Both, G.W.1
Sleigh, M.J.2
Cox, N.J.3
Kendal, A.P.4
-
6
-
-
0032736987
-
Positive selection on the H3 hemagglutinin gene of human influenza virus A
-
Bush, R. M., W. M. Fitch, C. A. Bender, and N. J. Cox. 1999. Positive selection on the H3 hemagglutinin gene of human influenza virus A. Mol. Biol. Evol. 16:1457-1465.
-
(1999)
Mol. Biol. Evol
, vol.16
, pp. 1457-1465
-
-
Bush, R.M.1
Fitch, W.M.2
Bender, C.A.3
Cox, N.J.4
-
7
-
-
43249087117
-
-
CDC. 2007. Deaths: final data for 2004. National Vital Statistics Reports 55. National Center for Health Statistics, Hyatlsville, MD.
-
CDC. 2007. Deaths: final data for 2004. National Vital Statistics Reports 55. National Center for Health Statistics, Hyatlsville, MD.
-
-
-
-
8
-
-
0142088791
-
Phylogenetic analysis reveals a low rate of homologous recombination in negative-sense RNA viruses
-
Chare, E. R., E. A. Gould, and E. C. Holmes. 2003. Phylogenetic analysis reveals a low rate of homologous recombination in negative-sense RNA viruses. J. Gen. Virol. 84:2691-2703.
-
(2003)
J. Gen. Virol
, vol.84
, pp. 2691-2703
-
-
Chare, E.R.1
Gould, E.A.2
Holmes, E.C.3
-
9
-
-
34447271704
-
Surveillance of resistance to adamantancs among influenza A(H3N2) and A(H1N1) viruses isolated worldwide
-
Deyde, V. M., X. Xu, R. A. Bright, M. Shaw, C. B. Smith, Y. Zhang, Y. Shu, L. V. Gubareva, N. J. Cox, and A. I. Klimov. 2007. Surveillance of resistance to adamantancs among influenza A(H3N2) and A(H1N1) viruses isolated worldwide. J. Infect. Dis. 196:249-257.
-
(2007)
J. Infect. Dis
, vol.196
, pp. 249-257
-
-
Deyde, V.M.1
Xu, X.2
Bright, R.A.3
Shaw, M.4
Smith, C.B.5
Zhang, Y.6
Shu, Y.7
Gubareva, L.V.8
Cox, N.J.9
Klimov, A.I.10
-
10
-
-
3042666256
-
MUSCLE: Multiple sequence alignment with high accuracy and high throughput
-
Edgar, R. C. 2004. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32:1792-1797.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
11
-
-
0037468827
-
Ecological and immunological determinants of influenza evolution. Nature
-
428-4.33
-
Ferguson, N. M., A. P. Galvani, and R. M. Bush. 2003. Ecological and immunological determinants of influenza evolution. Nature 422:428-4.33.
-
(2003)
, vol.422
-
-
Ferguson, N.M.1
Galvani, A.P.2
Bush, R.M.3
-
12
-
-
0030750055
-
Long term trends in the evolution of H(3) HA1 human influenza type A
-
Fitch, W. M., R. M. Bush, C. A. Bender, and N. J. Cox. 1997. Long term trends in the evolution of H(3) HA1 human influenza type A. Proc. Natl. Acad. Sci. USA 94:7712-7718.
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 7712-7718
-
-
Fitch, W.M.1
Bush, R.M.2
Bender, C.A.3
Cox, N.J.4
-
13
-
-
0035822899
-
Recombination in the hemagglutinin gene of ihe 1918 "Spanish Flu
-
Gibbs, M. J., J. S. Armstrong, and A. J. Gibbs. 2001. Recombination in the hemagglutinin gene of ihe 1918 "Spanish Flu". Science 293:1842.
-
(2001)
Science
, vol.293
, pp. 1842
-
-
Gibbs, M.J.1
Armstrong, J.S.2
Gibbs, A.J.3
-
14
-
-
24944468625
-
Whole-genome analysis of human influenza A virus reveals multiple persistent lineages and reassortment among recent H3N2 viruses
-
Holmes, E. C., E. Ghedin. N. Miller, J. Taylor, Y. M. Bao, K. St George, B. T. Grenfell, S. L. Salzberg, C. M. Fraser, D. J. Lipman, and J. K. Taubenberger. 2005. Whole-genome analysis of human influenza A virus reveals multiple persistent lineages and reassortment among recent H3N2 viruses. PLoS Biol. 3:e300.
-
(2005)
PLoS Biol
, vol.3
-
-
Holmes, E.C.1
Ghedin, E.2
Miller, N.3
Taylor, J.4
Bao, Y.M.5
St George, K.6
Grenfell, B.T.7
Salzberg, S.L.8
Fraser, C.M.9
Lipman, D.J.10
Taubenberger, J.K.11
-
15
-
-
0024439330
-
Avian-to-human transmission of the PB1 gene of influenza A viruses in the 1957 and 1968 pandemics
-
Kawaoka, Y., S. Krauss, and R. G. Webster. 1989. Avian-to-human transmission of the PB1 gene of influenza A viruses in the 1957 and 1968 pandemics. J. Virol. 63:4603-4608.
-
(1989)
J. Virol
, vol.63
, pp. 4603-4608
-
-
Kawaoka, Y.1
Krauss, S.2
Webster, R.G.3
-
16
-
-
0024347652
-
Increased viral pathogenicity after insertion of a 28 S ribosomal RNA sequence into the haemagglutinin gene of an influenza virus
-
Khatchikian, D., M. Orlich, and R. Rott. 1989. Increased viral pathogenicity after insertion of a 28 S ribosomal RNA sequence into the haemagglutinin gene of an influenza virus. Nature 340:156-157.
-
(1989)
Nature
, vol.340
, pp. 156-157
-
-
Khatchikian, D.1
Orlich, M.2
Rott, R.3
-
17
-
-
0018556854
-
Molecular epidemiology - influenza as archetype
-
Kilbourne, E. D. 1978. Molecular epidemiology - influenza as archetype. Harvey Lectures 73:225-258.
-
(1978)
Harvey Lectures
, vol.73
, pp. 225-258
-
-
Kilbourne, E.D.1
-
18
-
-
33846007284
-
Stochastic processes are key determinants of short-term evolution in influenza A virus
-
Nelson, M. I., L. Simonsen, C. Viboud, M. A. Miller, J. Taylor, K. S. George, S. B. Griesemer, E. Ghedin, N. A. Sengamalay, D. J. Spiro, I. Volkov, B. T. Grenfell, D. J. Lipman, J. K. Taubenberger, and E. C. Holmes. 2006. Stochastic processes are key determinants of short-term evolution in influenza A virus. PLoS Pathog. 2:e125.
-
(2006)
PLoS Pathog
, vol.2
-
-
Nelson, M.I.1
Simonsen, L.2
Viboud, C.3
Miller, M.A.4
Taylor, J.5
George, K.S.6
Griesemer, S.B.7
Ghedin, E.8
Sengamalay, N.A.9
Spiro, D.J.10
Volkov, I.11
Grenfell, B.T.12
Lipman, D.J.13
Taubenberger, J.K.14
Holmes, E.C.15
-
20
-
-
0028086229
-
Nonhomologous recombination between the hemagglutinin gene and the nucleoprotein gene of an influenza virus
-
Orlich, M., H. Gottwald, and R. Rott. 1994. Nonhomologous recombination between the hemagglutinin gene and the nucleoprotein gene of an influenza virus. Virology 204:462-465.
-
(1994)
Virology
, vol.204
, pp. 462-465
-
-
Orlich, M.1
Gottwald, H.2
Rott, R.3
-
21
-
-
0031773680
-
MODELTEST: Testing the model of DNA substitution
-
Posada, D., and K. A. Crandall. 1998. MODELTEST: testing the model of DNA substitution. Bioinformatics 14:817-818.
-
(1998)
Bioinformatics
, vol.14
, pp. 817-818
-
-
Posada, D.1
Crandall, K.A.2
-
22
-
-
0018144758
-
On the origin of the human influenza virus subtypes H2N2 and H3N2
-
Scholtissek, C., W. Rohde, V. Von Hoyningen, and R. Rott. 1978. On the origin of the human influenza virus subtypes H2N2 and H3N2. Virology 87:13-20.
-
(1978)
Virology
, vol.87
, pp. 13-20
-
-
Scholtissek, C.1
Rohde, W.2
Von Hoyningen, V.3
Rott, R.4
-
23
-
-
3142682239
-
Mapping the antigenic and genetic evolution of influenza virus
-
Smith, D. J., A. S. Lapedes, J. C. de Jong, T. M. Bestebroer, G. F. Rimmelzwaan, A. D. M. E. Osterhaus, and R. A. M. Fouchier. 2004. Mapping the antigenic and genetic evolution of influenza virus. Science 305:371-376.
-
(2004)
Science
, vol.305
, pp. 371-376
-
-
Smith, D.J.1
Lapedes, A.S.2
de Jong, J.C.3
Bestebroer, T.M.4
Rimmelzwaan, G.F.5
Osterhaus, A.D.M.E.6
Fouchier, R.A.M.7
-
25
-
-
12144289244
-
Recombination resulting in virulence shift in avian influenza outbreak
-
Suarez, D. L., D. A. Senne, J. Banks, I. H. Brown, S. C. Essen, C. W. Lee, R. J. Manvell, C. Mathieu-Benson, V. Moreno, and J. C. Pedersen. 2004. Recombination resulting in virulence shift in avian influenza outbreak, Chile. Emerg. Infect. Dis. 10:693-699.
-
(2004)
Chile. Emerg. Infect. Dis
, vol.10
, pp. 693-699
-
-
Suarez, D.L.1
Senne, D.A.2
Banks, J.3
Brown, I.H.4
Essen, S.C.5
Lee, C.W.6
Manvell, R.J.7
Mathieu-Benson, C.8
Moreno, V.9
Pedersen, J.C.10
-
26
-
-
43249095082
-
-
Swofford, D. L. 2003. PAUP*. Phylogenetic Analysis Using Parsimony *and other methods, version 4. Sinauer Associates, Sunderland, MA
-
Swofford, D. L. 2003. PAUP*. Phylogenetic Analysis Using Parsimony (*and other methods), version 4. Sinauer Associates, Sunderland, MA.
-
-
-
-
27
-
-
31344482504
-
1918 influenza: The mother of all pandemics
-
Taubenberger, J. K., and D. M. Morens. 2006. 1918 influenza: the mother of all pandemics. Emerg. Infect. Dis. 12:15-22.
-
(2006)
Emerg. Infect. Dis
, vol.12
, pp. 15-22
-
-
Taubenberger, J.K.1
Morens, D.M.2
-
28
-
-
0037425564
-
Mortality associated with influenza and respiratory syncytial virus in the United States
-
Thompson, W. W., D. K. Shay, E. Weintraub, L. Brammer, N. Cox, L. J. Anderson, and K. Fukuda. 2003. Mortality associated with influenza and respiratory syncytial virus in the United States. JAMA 289:179-186.
-
(2003)
JAMA
, vol.289
, pp. 179-186
-
-
Thompson, W.W.1
Shay, D.K.2
Weintraub, E.3
Brammer, L.4
Cox, N.5
Anderson, L.J.6
Fukuda, K.7
-
29
-
-
0026576063
-
Evolution and ecology of influenza A viruses
-
Webster, R. G., W. J. Bean, O. T. Gorman, T. M. Chambers, and Y. Kawaoka. 1992. Evolution and ecology of influenza A viruses. Microbiol. Rev. 56:152-179.
-
(1992)
Microbiol. Rev
, vol.56
, pp. 152-179
-
-
Webster, R.G.1
Bean, W.J.2
Gorman, O.T.3
Chambers, T.M.4
Kawaoka, Y.5
-
30
-
-
36749025693
-
Isolates of Zaire ebolavirus from wild apes reveal genetic lineage of recombinants
-
Wittmann, T. J., R. Biek, A. Hassanin, P. Rouquet, P. Reed, P. Yaba, X. Pourrut, L. A. Real, J.-P. Gonzalez, and E. M. Leroy. 2007. Isolates of Zaire ebolavirus from wild apes reveal genetic lineage of recombinants. Proc. Natl. Acad. Sci. USA 104:17123-17127.
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 17123-17127
-
-
Wittmann, T.J.1
Biek, R.2
Hassanin, A.3
Rouquet, P.4
Reed, P.5
Yaba, P.6
Pourrut, X.7
Real, L.A.8
Gonzalez, J.-P.9
Leroy, E.M.10
-
31
-
-
0037066845
-
Questioning the evidence for genetic recombination in the 1918 "Spanish Flu" virus
-
Worobey, M., A. Rambaut, O. G. Pybus, and D. L. Robertson. 2002. Questioning the evidence for genetic recombination in the 1918 "Spanish Flu" virus. Science 296:211.
-
(2002)
Science
, vol.296
, pp. 211
-
-
Worobey, M.1
Rambaut, A.2
Pybus, O.G.3
Robertson, D.L.4
|