Adaptation from standing genetic variation

Trends in Ecology and Evolution

Volumn 23, Issue 1, 2008, Pages 38-44

  Barrett, Rowan D H ^a   Schluter, Dolph ^a  

^a UNIVERSITY OF BRITISH COLUMBIA   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

MELANOCORTIN 1 RECEPTOR;

ADAPTATION; ALLELE; ENVIRONMENTAL CHANGE; GENETIC VARIATION; MUTATION; SELECTION;

ADAPTATION; ANIMAL; ARABIDOPSIS; DOMINANT GENE; EVOLUTION; FLY; GENETIC SELECTION; GENETIC VARIABILITY; GENETICS; MUTATION; PEROMYSCUS; PHYSIOLOGY; REVIEW; SMEGMAMORPHA;

ADAPTATION, BIOLOGICAL; ANIMALS; ARABIDOPSIS; DIPTERA; EVOLUTION; GENES, DOMINANT; MUTATION; PEROMYSCUS; RECEPTOR, MELANOCORTIN, TYPE 1; SELECTION (GENETICS); SMEGMAMORPHA; VARIATION (GENETICS);

EID: 37549030093     PISSN: 01695347     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.tree.2007.09.008     Document Type: Review

References (70)

1. Innan H., and Kim Y. Pattern of polymorphism after strong artificial selection in a domestication event. Proc. Natl. Acad. Sci. U. S. A. 101 (2004) 10667-10672
2. Palumbi S.R. Humans as the world's greatest evolutionary force. Science 293 (2001) 1786-1790
3. Franks S.J., et al. Rapid evolution of flowering time by an annual plant in response to a climate fluctuation. Proc. Natl. Acad. Sci. U. S. A. 104 (2007) 1278-1282
4. Bradshaw A.D., and McNeilly T. Evolutionary response to global climatic change. Ann. Bot. 67 (1991) 5-14
5. Rieseberg L.H., et al. Major ecological transitions in wild sunflowers facilitated by hybridization. Science 301 (2003) 1211-1216
6. Liti G., et al. Sequence diversity, reproductive isolation and species concepts in Saccharomyces. Genetics 174 (2006) 839-850
7. McGregor A.P., et al. Morphological evolution through multiple cis-regulatory mutations at a single gene. Nature 448 (2007) 587-591
8. Schluter D., et al. Parallel evolution and inheritance of quantitative traits. Am. Nat. 163 (2004) 809-822
9. Przeworski M., et al. The signature of positive selection on standing genetic variation. Evolution Int. J. Org. Evolution 59 (2005) 2312-2323
10. Hedrick P.W. Genetic polymorphism in heterogeneous environments: a decade later. Annu. Rev. Ecol. Syst. 17 (1986) 535-566
11. Hedrick P.W. Genetic polymorphism in heterogeneous environments: The age of genomics. Annu. Rev. Ecol. Evol. Syst. 37 (2006) 67-93
12. Lynch M., and Walsh J.B. Genetics and Analysis of Quantitative Traits (1998), Sinauer
13. Barton N.H., and Keightley P.D. Understanding quantitative genetic variation. Nat. Rev. Genet. 3 (2002) 11-21
14. Hill W.G. Rates of change in quantitative traits from fixation of new mutations. Proc. Natl. Acad. Sci. U. S. A. 79 (1982) 142-145
15. Roff D. Evolutionary Quantitative Genetics (2007), Chapman & Hall
16. Orr H.A. Theories of adaptation: what they do and don't say. Genetica 123 (2005) 3-13
17. Orr H.A. The genetic theory of adaptation: a brief history. Nat. Rev. Genet. 6 (2005) 119-127
18. Hermisson J., and Pennings P.S. Soft sweeps: molecular population genetics of adaptation from standing genetic variation. Genetics 169 (2005) 2335-2352
19. Orr H.A., and Betancourt A.J. Haldane's sieve and adaptation from the standing genetic variation. Genetics 157 (2001) 875-884
20. Charlesworth B. Evolutionary rates in partially self-fertilizing species. Am. Nat. 140 (1992) 126-148
21. Turner J.R.G. Adaptation and evolution in Heliconius: a defense of neoDarwinism. Annu. Rev. Ecol. Syst. 12 (1981) 99-121
22. Haldane J.B.S. The mathmatical theory of natural and artificial selection, part V: Selection and mutation. Proc. Camb. Phil. Soc. 23 (1927) 838-844
23. Gibson G., and Dworkin I. Uncovering cryptic genetic variation. Nat. Rev. Genet. 5 (2004) 681-691
24. Steiner C.C., et al. Adaptive variation in beach mice produced by two interacting pigmentation genes. PLoS Biol. 5 (2007) e219
25. Hoekstra H.E., et al. A single amino acid mutation contributes to adaptive beach mouse color pattern. Science 313 (2006) 101-104
26. Otto S.P. Detecting the form of selection from DNA sequence data. Trends Genet. 16 (2000) 526-529
27. Kaplan N.L., et al. The hitchhiking effect revisited. Genetics 123 (1989) 887-899
28. Maynard-Smith J., and Haigh J. Hitch-hiking effect of a favorable gene. Genet. Res. 23 (1974) 23-35
29. Akey J.M., et al. Population history and natural selection shape patterns of genetic variation in 132 genes. PLoS Biol. 2 (2004) e286
30. Beisswanger S., et al. Evidence for a selective sweep in the wapl region of Drosophila melanogaster. Genetics 172 (2006) 265-274
31. Shapiro J.A., et al. Adaptive genic evolution in the Drosophila genomes. Proc. Natl. Acad. Sci. U. S. A. 104 (2007) 2271-2276
32. Fay J.C., and Wu C.I. Hitchhiking under positive Darwinian selection. Genetics 155 (2000) 1405-1413
33. Hamblin M.T., and Di Rienzo A. Detection of the signature of natural selection in humans: evidence from the Duffy blood group locus. Am. J. Hum. Genet. 66 (2000) 1669-1679
34. Hamblin M.T., et al. Complex signatures of natural selection at the Duffy blood group locus. Am. J. Hum. Genet. 70 (2002) 369-383
35. Harr B., et al. Hitchhiking mapping: a population-based fine-mapping strategy for adaptive mutations in Drosophila melanogaster. Proc. Natl. Acad. Sci. U. S. A. 99 (2002) 12949-12954
36. Kauer M.O., et al. A microsatellite variability screen for positive selection associated with the "Out of Africa" habitat expansion of Drosophila melanogaster. Genetics 165 (2003) 1137-1148
37. Nielsen R., et al. A scan for positively selected genes in the genomes of humans and chimpanzees. PLoS Biol. 3 (2005) e170
38. Kohn M.H., et al. Natural selection mapping of the warfarin-resistance gene. Proc. Natl. Acad. Sci. U. S. A. 97 (2000) 7911-7915
39. Wootton J.C., et al. Genetic diversity and chloroquine selective sweeps in Plasmodium falciparum. Nature 418 (2002) 320-323
40. Burke J.M., et al. Genetic consequences of selection during the evolution of cultivated sunflower. Genetics 171 (2005) 1933-1940
41. Clark R.M., et al. Pattern of diversity in the genomic region near the maize domestication gene tb1. Proc. Natl. Acad. Sci. U. S. A. 101 (2004) 700-707
42. Purugganan M.D., et al. Variation and selection at the CAULIFLOWER floral homeotic gene accompanying the evolution of domesticated Brassica oleracea. Genetics 155 (2000) 855-862
43. Wright S.I., et al. The effects of artificial selection on the maize genome. Science 308 (2005) 1310-1314
44. Wang R.L., et al. The limits of selection during maize domestication. Nature 398 (1999) 236-239
45. Casa A.M., et al. Evidence for a selective sweep on chromosome 1 of cultivated sorghum. Crop Sci. 46 (2006) S27-S40
46. Olsen K.M., et al. Selection under domestication: evidence for a sweep in the rice waxy genomic region. Genetics 173 (2006) 975-983
47. Pennings P.S., and Hermisson J. Soft sweeps II: the signature of positive selection from recurrent mutation or migration. Mol. Biol. Evol. 23 (2006) 1076-1084
48. Pennings P.S., and Hermisson J. Soft Sweeps III: the signature of positive selection from recurrent mutation. PLoS Genet. 2 (2006) e186
49. Shimizu K.K., et al. Darwinian selection on a selfing locus. Science 306 (2004) 2081-2084
50. Schlenke T.A., and Begun D.J. Strong selective sweep associated with a transposon insertion in Drosophila simulans. Proc. Natl. Acad. Sci. U. S. A. 101 (2004) 1626-1631
51. Catania F., et al. World-wide survey of an Accord insertion and its association with DDT resistance in Drosophila melanogaster. Mol. Ecol. 13 (2004) 2491-2504
52. Kim Y., and Nielsen R. Linkage disequilibrium as a signature of selective sweeps. Genetics 167 (2004) 1513-1524
53. Przeworski M. The signature of positive selection at randomly chosen loci. Genetics 160 (2002) 1179-1189
54. McVean G. The structure of linkage disequilibrium around a selective sweep. Genetics 175 (2007) 1395-1406
55. Santiago E., and Caballero A. Variation after a selective sweep in a subdivided population. Genetics 169 (2005) 475-483
56. Slatkin M., and Wiehe T. Genetic hitch-hiking in a subdivided population. Genet. Res. 71 (1998) 155-160
57. Nielsen R. Statistical tests of selective neutrality in the age of genomics. Heredity 86 (2001) 641-647
58. Kim Y., and Stephan W. Detecting a local signature of genetic hitchhiking along a recombining chromosome. Genetics 160 (2002) 765-777
59. Barton N.H. The effect of hitch-hiking on neutral genealogies. Genet. Res. 72 (1998) 123-133
60. Teshima K.M., et al. How reliable are empirical genome scans for selective sweeps. Genome Res. 16 (2006) 702-712
61. Tishkoff S.A., et al. Convergent adaptation of human lactase persistence in Africa and Europe. Nat. Genet. 39 (2007) 31-40
62. Enattah N.S., et al. Identification of a variant associated with adult-type hypolactasia. Nat. Genet. 30 (2002) 233-237
63. Swallow D.M. Genetics of lactase persistence and lactose intolerance. Annu. Rev. Genet. 37 (2003) 197-219
64. Beja-Pereira A., et al. Gene-culture coevolution between cattle milk protein genes and human lactase genes. Nat. Genet. 35 (2003) 311-313
65. Myles S., et al. Genetic evidence in support of a shared Eurasian-North African dairying origin. Hum. Genet. 117 (2005) 34-42
66. Pelz H.J., et al. The genetic basis of resistance to anticoagulants in rodents. Genetics 170 (2005) 1839-1847
67. Colosimo P.F., et al. Widespread parallel evolution in sticklebacks by repeated fixation of ectodysplasin alleles. Science 307 (2005) 1928-1933
68. Feder J.L., et al. Allopatric genetic origins for sympatric host-plant shifts and race formation in Rhagoletis. Proc. Natl. Acad. Sci. U. S. A. 100 (2003) 10314-10319
69. Feder J.L., et al. Selective maintenance of allozyme differences among sympatric host races of the apple maggot fly. Proc. Natl. Acad. Sci. U. S. A. 94 (1997) 11417-11421
70. Michel, A.P. et al. The genetic structure of hawthorn-infesting Rhagoletis pomonella populations in Mexico: implications for sympatric host race formation. Mol. Ecol. 16, 2867-2878