-
1
-
-
84891806332
-
Type i restriction enzymes and their relatives
-
Loenen, W.A., Dryden, D.T., Raleigh, E.A., Wilson, G.G. (2014) Type I restriction enzymes and their relatives. Nucleic Acids Res., 42, 20-44.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. 20-44
-
-
Loenen, W.A.1
Dryden, D.T.2
Raleigh, E.A.3
Wilson, G.G.4
-
2
-
-
84891788027
-
Type III restriction-modification enzymes: A historical perspective
-
Rao, D.N., Dryden, D.T., Bheemanaik, S. (2014) Type III restriction-modification enzymes: a historical perspective. Nucleic Acids Res., 42, 45-55.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. 45-55
-
-
Rao, D.N.1
Dryden, D.T.2
Bheemanaik, S.3
-
3
-
-
84891801241
-
The other face of restriction: Modification-dependent enzymes
-
Loenen, W.A., Raleigh, E.A. (2014) The other face of restriction: modification-dependent enzymes. Nucleic Acids Res., 42, 56-69.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. 56-69
-
-
Loenen, W.A.1
Raleigh, E.A.2
-
4
-
-
84891820984
-
Highlights of the DNA cutters: A short history of the restriction enzymes
-
Loenen, W.A., Dryden, D.T., Raleigh, E.A., Wilson, G.G., Murray, N.E. (2014) Highlights of the DNA cutters: a short history of the restriction enzymes. Nucleic Acids Res., 42, 3-19.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. 3-19
-
-
Loenen, W.A.1
Dryden, D.T.2
Raleigh, E.A.3
Wilson, G.G.4
Murray, N.E.5
-
5
-
-
84888261745
-
To be or not to be: Regulation of restriction-modification systems and other toxin-antitoxin systems
-
Mruk, I., Kobayashi, I. (2014) To be or not to be: regulation of restriction-modification systems and other toxin-antitoxin systems. Nucleic Acids Res., 42, 70-86.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. 70-86
-
-
Mruk, I.1
Kobayashi, I.2
-
6
-
-
17844400537
-
How restriction enzymes became the workhorses of molecular biology
-
Roberts, R.J. (2005) How restriction enzymes became the workhorses of molecular biology. Proc. Natl. Acad. Sci. U.S.A., 102, 5905-5908.
-
(2005)
Proc. Natl. Acad. Sci. U.S.A.
, vol.102
, pp. 5905-5908
-
-
Roberts, R.J.1
-
7
-
-
75549086595
-
REBASE-a database for DNA restriction and modification: Enzymes, genes and genomes
-
Roberts, R.J., Vincze, T., Posfai, J., Macelis, D. (2010) REBASE-a database for DNA restriction and modification: enzymes, genes and genomes. Nucleic Acids Res., 38, D234-D236.
-
(2010)
Nucleic Acids Res.
, vol.38
-
-
Roberts, R.J.1
Vincze, T.2
Posfai, J.3
Macelis, D.4
-
8
-
-
17044403057
-
Type II restriction endonucleases: Structure and mechanism
-
Pingoud, A., Fuxreiter, M., Pingoud, V., Wende, W. (2005) Type II restriction endonucleases: structure and mechanism. Cell. Mol. Life Sci., 62, 685-707.
-
(2005)
Cell. Mol. Life Sci.
, vol.62
, pp. 685-707
-
-
Pingoud, A.1
Fuxreiter, M.2
Pingoud, V.3
Wende, W.4
-
10
-
-
0001808633
-
-
Linn, SM and Roberts, RJ (eds) Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
-
Modrich, P., Roberts, R.J. (1982) In: Linn, SM and Roberts, RJ (eds). Nucleases. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY, pp. 109-154.
-
(1982)
Nucleases
, pp. 109-154
-
-
Modrich, P.1
Roberts, R.J.2
-
11
-
-
0002598414
-
-
Linn, SM, Lloyd, RS and Roberts, RJ (eds) Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
-
Roberts, R.J., Halford, S.E. (1993) In: Linn, SM, Lloyd, RS and Roberts, RJ (eds). Nucleases. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY, pp. 35-88.
-
(1993)
Nucleases
, pp. 35-88
-
-
Roberts, R.J.1
Halford, S.E.2
-
12
-
-
0015692158
-
A suggested nomenclature for bacterial host modification and restriction systems and their enzymes
-
Smith, H.O., Nathans, D. (1973) A suggested nomenclature for bacterial host modification and restriction systems and their enzymes. J. Mol. Biol., 81, 419-423.
-
(1973)
J. Mol. Biol.
, vol.81
, pp. 419-423
-
-
Smith, H.O.1
Nathans, D.2
-
13
-
-
0017021326
-
Restriction endonucleases
-
Roberts, R.J. (1976) Restriction endonucleases. CRC Crit. Rev. Biochem., 4, 123-164.
-
(1976)
CRC Crit. Rev. Biochem.
, vol.4
, pp. 123-164
-
-
Roberts, R.J.1
-
14
-
-
0037389511
-
A nomenclature for restriction enzymes, DNA methyltransferases, homing endonucleases and their genes
-
Roberts, R.J., Belfort, M., Bestor, T., Bhagwat, A.S., Bickle, T.A., Bitinaite, J., Blumenthal, R.M., Degtyarev, S., Dryden, D.T., Dybvig, K. et al. (2003) A nomenclature for restriction enzymes, DNA methyltransferases, homing endonucleases and their genes. Nucleic Acids Res., 31, 1805-1812.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 1805-1812
-
-
Roberts, R.J.1
Belfort, M.2
Bestor, T.3
Bhagwat, A.S.4
Bickle, T.A.5
Bitinaite, J.6
Blumenthal, R.M.7
Degtyarev, S.8
Dryden, D.T.9
Dybvig, K.10
-
15
-
-
0024297474
-
Chlorella viruses code for restriction and modification enzymes
-
Van Etten, J.L., Xia, Y., Burbank, D.E., Narva, K.E. (1988) Chlorella viruses code for restriction and modification enzymes. Gene, 74, 113-115.
-
(1988)
Gene
, vol.74
, pp. 113-115
-
-
Van Etten, J.L.1
Xia, Y.2
Burbank, D.E.3
Narva, K.E.4
-
16
-
-
0026707850
-
Characterization of Chlorella virus PBCV-1 CviAII restriction and modification system
-
Zhang, Y., Nelson, M., Nietfeldt, J.W., Burbank, D.E., Van Etten, J.L. (1992) Characterization of Chlorella virus PBCV-1 CviAII restriction and modification system. Nucleic Acids Res., 20, 5351-5356.
-
(1992)
Nucleic Acids Res.
, vol.20
, pp. 5351-5356
-
-
Zhang, Y.1
Nelson, M.2
Nietfeldt, J.W.3
Burbank, D.E.4
Van Etten, J.L.5
-
17
-
-
0031959624
-
Chlorella viruses encode multiple DNA methyltransferases
-
Nelson, M., Burbank, D.E., Van Etten, J.L. (1998) Chlorella viruses encode multiple DNA methyltransferases. Biol. Chem., 379, 423-428.
-
(1998)
Biol. Chem.
, vol.379
, pp. 423-428
-
-
Nelson, M.1
Burbank, D.E.2
Van Etten, J.L.3
-
18
-
-
0029887642
-
M. BssHII, a multispecific cytosine-C5-DNA-methyltransferase with unusual target recognizing properties
-
Schumann, J., Walter, J., Willert, J., Wild, C., Koch, D., Trautner, T.A. (1996) M.BssHII, a multispecific cytosine-C5-DNA-methyltransferase with unusual target recognizing properties. J. Mol. Biol., 257, 949-959.
-
(1996)
J. Mol. Biol.
, vol.257
, pp. 949-959
-
-
Schumann, J.1
Walter, J.2
Willert, J.3
Wild, C.4
Koch, D.5
Trautner, T.A.6
-
19
-
-
0028171097
-
M.phi 3TII: A new monospecific DNA (cytosine-C5) methyltransferase with pronounced amino acid sequence similarity to a family of adenine-N6-DNA- methyltransferases
-
Noyer-Weidner, M., Walter, J., Terschuren, P.A., Chai, S., Trautner, T.A. (1994) M.phi 3TII: a new monospecific DNA (cytosine-C5) methyltransferase with pronounced amino acid sequence similarity to a family of adenine-N6-DNA- methyltransferases. Nucleic Acids Res., 22, 4066-4072.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 4066-4072
-
-
Noyer-Weidner, M.1
Walter, J.2
Terschuren, P.A.3
Chai, S.4
Trautner, T.A.5
-
20
-
-
0023322333
-
Organization of multispecific DNA methyltransferases encoded by temperate Bacillus subtilis phages
-
Behrens, B., Noyer-Weidner, M., Pawlek, B., Lauster, R., Balganesh, T.S., Trautner, T.A. (1987) Organization of multispecific DNA methyltransferases encoded by temperate Bacillus subtilis phages. EMBO J., 6, 1137-1142.
-
(1987)
EMBO J.
, vol.6
, pp. 1137-1142
-
-
Behrens, B.1
Noyer-Weidner, M.2
Pawlek, B.3
Lauster, R.4
Balganesh, T.S.5
Trautner, T.A.6
-
21
-
-
39449106934
-
Tetrameric restriction enzymes: Expansion to the GIY-YIG nuclease family
-
Gasiunas, G., Sasnauskas, G., Tamulaitis, G., Urbanke, C., Razaniene, D., Siksnys, V. (2008) Tetrameric restriction enzymes: expansion to the GIY-YIG nuclease family. Nucleic Acids Res., 36, 938-949.
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 938-949
-
-
Gasiunas, G.1
Sasnauskas, G.2
Tamulaitis, G.3
Urbanke, C.4
Razaniene, D.5
Siksnys, V.6
-
22
-
-
77953604755
-
Unusual target site disruption by the rare-cutting HNH restriction endonuclease PacI
-
Shen, B.W., Heiter, D.F., Chan, S.H., Wang, H., Xu, S.Y., Morgan, R.D., Wilson, G.G., Stoddard, B.L. (2010) Unusual target site disruption by the rare-cutting HNH restriction endonuclease PacI. Structure, 18, 734-743.
-
(2010)
Structure
, vol.18
, pp. 734-743
-
-
Shen, B.W.1
Heiter, D.F.2
Chan, S.H.3
Wang, H.4
Xu, S.Y.5
Morgan, R.D.6
Wilson, G.G.7
Stoddard, B.L.8
-
23
-
-
0242662176
-
Glucocorticoid receptor-like Zn(Cys)(4) motifs in BslI restriction endonuclease
-
Vanamee, E.S., Hsieh, P.C., Zhu, Z.Y., Yates, D., Garman, E., Xu, S.Y., Aggarwal, A.K. (2003) Glucocorticoid receptor-like Zn(Cys)(4) motifs in BslI restriction endonuclease. J. Mol. Biol., 334, 595-603.
-
(2003)
J. Mol. Biol.
, vol.334
, pp. 595-603
-
-
Vanamee, E.S.1
Hsieh, P.C.2
Zhu, Z.Y.3
Yates, D.4
Garman, E.5
Xu, S.Y.6
Aggarwal, A.K.7
-
24
-
-
84867319935
-
Crystal structure and mechanism of action of the N6-methyladenine- dependent type IIM restriction
-
Siwek, W., Czapinska, H., Bochtler, M., Bujnicki, J.M., Skowronek, K. (2012) Crystal structure and mechanism of action of the N6-methyladenine- dependent type IIM restriction. Nucleic Acids Res., 40, 7563-7572.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 7563-7572
-
-
Siwek, W.1
Czapinska, H.2
Bochtler, M.3
Bujnicki, J.M.4
Skowronek, K.5
-
25
-
-
41449117713
-
Structures of the rare-cutting restriction endonuclease NotI reveal a unique metal binding fold involved in DNA binding
-
Lambert, A.R., Sussman, D., Shen, B., Maunus, R., Nix, J., Samuelson, J., Xu, S.Y., Stoddard, B.L. (2008) Structures of the rare-cutting restriction endonuclease NotI reveal a unique metal binding fold involved in DNA binding. Structure, 16, 558-569.
-
(2008)
Structure
, vol.16
, pp. 558-569
-
-
Lambert, A.R.1
Sussman, D.2
Shen, B.3
Maunus, R.4
Nix, J.5
Samuelson, J.6
Xu, S.Y.7
Stoddard, B.L.8
-
26
-
-
46349101158
-
Structural and evolutionary classification of Type II restriction enzymes based on theoretical and experimental analyses
-
Orlowski, J., Bujnicki, J.M. (2008) Structural and evolutionary classification of Type II restriction enzymes based on theoretical and experimental analyses. Nucleic Acids Res., 36, 3552-3569.
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 3552-3569
-
-
Orlowski, J.1
Bujnicki, J.M.2
-
27
-
-
0343373390
-
On the host-controlled modification of bacteriophage lambda
-
Arber, W., Hattman, S., Dussoix, D. (1963) On the host-controlled modification of bacteriophage lambda. Virology, 21, 30-35.
-
(1963)
Virology
, vol.21
, pp. 30-35
-
-
Arber, W.1
Hattman, S.2
Dussoix, D.3
-
29
-
-
0001195758
-
Host controlled variation in bacterial viruses
-
Bertani, G., Weigle, J.J. (1953) Host controlled variation in bacterial viruses. J. Bacteriol., 65, 113-121.
-
(1953)
J. Bacteriol.
, vol.65
, pp. 113-121
-
-
Bertani, G.1
Weigle, J.J.2
-
30
-
-
0014462494
-
DNA modification and restriction
-
Arber, W., Linn, S. (1969) DNA modification and restriction. Annu. Rev. Biochem., 38, 467-500.
-
(1969)
Annu. Rev. Biochem.
, vol.38
, pp. 467-500
-
-
Arber, W.1
Linn, S.2
-
31
-
-
0015192625
-
DNA restriction and modification mechanisms in bacteria
-
Boyer, H.W. (1971) DNA restriction and modification mechanisms in bacteria. Annu. Rev. Microbiol., 25, 153-176.
-
(1971)
Annu. Rev. Microbiol.
, vol.25
, pp. 153-176
-
-
Boyer, H.W.1
-
32
-
-
0014043365
-
The fractionation of high-molecular-weight ribonucleic acid by polyacrylamide-gel electrophoresis
-
Loening, U.E. (1967) The fractionation of high-molecular-weight ribonucleic acid by polyacrylamide-gel electrophoresis. Biochem. J., 102, 251-257.
-
(1967)
Biochem. J.
, vol.102
, pp. 251-257
-
-
Loening, U.E.1
-
33
-
-
0015178664
-
Specific cleavage of simian virus 40 DNA by restriction endonuclease of Hemophilus influenzae
-
Danna, K., Nathans, D. (1971) Specific cleavage of simian virus 40 DNA by restriction endonuclease of Hemophilus influenzae. Proc. Natl. Acad. Sci. U.S.A., 68, 2913-2917.
-
(1971)
Proc. Natl. Acad. Sci. U.S.A.
, vol.68
, pp. 2913-2917
-
-
Danna, K.1
Nathans, D.2
-
34
-
-
0015906819
-
Detection of two restriction endonuclease activities in Haemophilus parainfluenzae using analytical agarose-ethidium bromide electrophoresis
-
Sharp, P.A., Sugden, B., Sambrook, J. (1973) Detection of two restriction endonuclease activities in Haemophilus parainfluenzae using analytical agarose-ethidium bromide electrophoresis. Biochemistry, 12, 3055-3063.
-
(1973)
Biochemistry
, vol.12
, pp. 3055-3063
-
-
Sharp, P.A.1
Sugden, B.2
Sambrook, J.3
-
35
-
-
0016279683
-
Analysis of endonuclease R EcoRI fragments of DNA from lambdoid bacteriophages and other viruses by agarose-gel electrophoresis
-
Helling, R.B., Goodman, H.M., Boyer, H.W. (1974) Analysis of endonuclease R EcoRI fragments of DNA from lambdoid bacteriophages and other viruses by agarose-gel electrophoresis. J. Virol., 14, 1235-1243.
-
(1974)
J. Virol.
, vol.14
, pp. 1235-1243
-
-
Helling, R.B.1
Goodman, H.M.2
Boyer, H.W.3
-
36
-
-
0022262808
-
Individual-specific 'fingerprints' of human DNA
-
Jeffreys, A.J., Wilson, V., Thein, S.L. (1985) Individual-specific 'fingerprints' of human DNA. Nature, 316, 76-79.
-
(1985)
Nature
, vol.316
, pp. 76-79
-
-
Jeffreys, A.J.1
Wilson, V.2
Thein, S.L.3
-
37
-
-
0014966125
-
A restriction enzyme from Hemophilus influenzae. I. Purification and general properties
-
Smith, H.O., Wilcox, K.W. (1970) A restriction enzyme from Hemophilus influenzae. I. Purification and general properties. J. Mol. Biol., 51, 379-391.
-
(1970)
J. Mol. Biol.
, vol.51
, pp. 379-391
-
-
Smith, H.O.1
Wilcox, K.W.2
-
38
-
-
0014966111
-
A restriction enzyme from hemophilus influenzae II. Base sequence of the recognition site
-
Kelly, T.J. Jr., Smith, H.O. (1970) A restriction enzyme from Hemophilus influenzae II. Base sequence of the recognition site. J. Mol. Biol., 51, 393-409.
-
(1970)
J. Mol. Biol.
, vol.51
, pp. 393-409
-
-
Kelly, Jr.T.J.1
Smith, H.O.2
-
39
-
-
0015456242
-
R factor-controlled restriction and modification of deoxyribonucleic acids: Restriction mutants
-
Yoshimori, R., Roulland-Dussoix, D., Boyer, H.W. (1972) R factor-controlled restriction and modification of deoxyribonucleic acids: restriction mutants. J. Bacteriol., 112, 1275-1279.
-
(1972)
J. Bacteriol.
, vol.112
, pp. 1275-1279
-
-
Yoshimori, R.1
Roulland-Dussoix, D.2
Boyer, H.W.3
-
40
-
-
0015368458
-
Specific fragments of PhiX174 deoxyribonucleic acid produced by a restriction enzyme from Haemophilus aegyptius, endonuclease Z
-
Middleton, J.H., Edgell, M.H., Hutchison, C.A. III. (1972) Specific fragments of PhiX174 deoxyribonucleic acid produced by a restriction enzyme from Haemophilus aegyptius, endonuclease Z. J. Virol., 10, 42-50.
-
(1972)
J. Virol.
, vol.10
, pp. 42-50
-
-
Middleton, J.H.1
Edgell, M.H.2
Hutchison III, C.A.3
-
41
-
-
0015302785
-
Action of Haemophilus endodeoxyribonuclease on biologically active deoxyribonucleic acid
-
Gromkova, R., Goodgal, S.H. (1972) Action of Haemophilus endodeoxyribonuclease on biologically active deoxyribonucleic acid. J. Bacteriol., 109, 987-992.
-
(1972)
J. Bacteriol.
, vol.109
, pp. 987-992
-
-
Gromkova, R.1
Goodgal, S.H.2
-
42
-
-
0016605006
-
Recognition sequence of restriction endonuclease III from Hemophilus influenzae
-
Old, R., Murray, K., Roizes, G. (1975) Recognition sequence of restriction endonuclease III from Hemophilus influenzae. J. Mol. Biol., 92, 331-339.
-
(1975)
J. Mol. Biol.
, vol.92
, pp. 331-339
-
-
Old, R.1
Murray, K.2
Roizes, G.3
-
43
-
-
77951953893
-
The (billion dollar) consequences of studying why certain isolates of phage lambda infect only certain strains of E coli: Restriction enzymes
-
Halford, S.E. (2009) The (billion dollar) consequences of studying why certain isolates of phage.lambda. infect only certain strains of E. coli: restriction enzymes. Biochemist, 31, 10-13.
-
(2009)
Biochemist
, vol.31
, pp. 10-13
-
-
Halford, S.E.1
-
45
-
-
0015515837
-
Specific origin in SV40 DNA replication
-
Nathans, D., Danna, K.J. (1972) Specific origin in SV40 DNA replication. Nat. New Biol., 236, 200-202.
-
(1972)
Nat. New Biol.
, vol.236
, pp. 200-202
-
-
Nathans, D.1
Danna, K.J.2
-
46
-
-
0018036736
-
Restriction and modification enzymes and their recognition sequences
-
Roberts, R.J. (1978) Restriction and modification enzymes and their recognition sequences. Gene, 4, 183-193.
-
(1978)
Gene
, vol.4
, pp. 183-193
-
-
Roberts, R.J.1
-
47
-
-
0015891545
-
Recognition sequence of a restriction enzyme
-
Bigger, C.H., Murray, K., Murray, N.E. (1973) Recognition sequence of a restriction enzyme. Nat. New Biol., 244, 7-10.
-
(1973)
Nat. New Biol.
, vol.244
, pp. 7-10
-
-
Bigger, C.H.1
Murray, K.2
Murray, N.E.3
-
48
-
-
0015429043
-
DNA nucleotide sequence restricted by the RI endonuclease
-
Hedgpeth, J., Goodman, H.M., Boyer, H.W. (1972) DNA nucleotide sequence restricted by the RI endonuclease. Proc. Natl. Acad. Sci. U.S.A., 69, 3448-3452.
-
(1972)
Proc. Natl. Acad. Sci. U.S.A.
, vol.69
, pp. 3448-3452
-
-
Hedgpeth, J.1
Goodman, H.M.2
Boyer, H.W.3
-
49
-
-
0016819921
-
Sequences spanning the EcoRI substrate site
-
Garfin, D.E., Boyer, H.W., Goodman, H.M. (1975) Sequences spanning the EcoRI substrate site. Nucleic Acids Res., 2, 1851-1865.
-
(1975)
Nucleic Acids Res.
, vol.2
, pp. 1851-1865
-
-
Garfin, D.E.1
Boyer, H.W.2
Goodman, H.M.3
-
50
-
-
0015806892
-
DNA Substrate Site for the EcoRII restriction endonuclease and modification methylase
-
Boyer, H.W., Chow, L.T., Dugaiczyk, A., Hedgpeth, J., Goodman, H.M. (1973) DNA substrate site for the EcoRII restriction endonuclease and modification methylase. Nat. New Biol., 244, 40-43.
-
(1973)
Nat. New Biol.
, vol.244
, pp. 40-43
-
-
Boyer, H.W.1
Chow, L.T.2
Dugaiczyk, A.3
Hedgpeth, J.4
Goodman, H.M.5
-
51
-
-
0017730133
-
EcoRI methylase physical and catalytic properties of the homogeneous enzyme
-
Rubin, R.A., Modrich, P. (1977) EcoRI methylase physical and catalytic properties of the homogeneous enzyme. J. Biol. Chem., 252, 7265-7272.
-
(1977)
J. Biol. Chem.
, vol.252
, pp. 7265-7272
-
-
Rubin, R.A.1
Modrich, P.2
-
52
-
-
0020137375
-
Two identical subunits of the EcoRI restriction endonuclease co-operate in the binding and cleavage of the palindromic substrate
-
Alves, J., Pingoud, A., Langowski, J., Urbanke, C., Maass, G. (1982) Two identical subunits of the EcoRI restriction endonuclease co-operate in the binding and cleavage of the palindromic substrate. Eur. J. Biochem., 124, 139-142.
-
(1982)
Eur. J. Biochem.
, vol.124
, pp. 139-142
-
-
Alves, J.1
Pingoud, A.2
Langowski, J.3
Urbanke, C.4
Maass, G.5
-
53
-
-
0015427591
-
Cleavage of DNA by EcoRI restriction endonuclease generates cohesive ends
-
Mertz, J.E., Davis, R.W. (1972) Cleavage of DNA by EcoRI restriction endonuclease generates cohesive ends. Proc. Natl. Acad. Sci. U.S.A., 69, 3370-3374.
-
(1972)
Proc. Natl. Acad. Sci. U.S.A.
, vol.69
, pp. 3370-3374
-
-
Mertz, J.E.1
Davis, R.W.2
-
54
-
-
2442728636
-
Construction of biologically functional bacterial plasmids in vitro
-
Cohen, S.N., Chang, A.C., Boyer, H.W., Helling, R.B. (1973) Construction of biologically functional bacterial plasmids in vitro. Proc. Natl. Acad. Sci. U.S.A., 70, 3240-3244.
-
(1973)
Proc. Natl. Acad. Sci. U.S.A.
, vol.70
, pp. 3240-3244
-
-
Cohen, S.N.1
Chang, A.C.2
Boyer, H.W.3
Helling, R.B.4
-
55
-
-
0040936825
-
Replication and transcription of eukaryotic DNA in Escherichia coli
-
Morrow, J.F., Cohen, S.N., Chang, A.C., Boyer, H.W., Goodman, H.M., Helling, R.B. (1974) Replication and transcription of eukaryotic DNA in Escherichia coli. Proc. Natl. Acad. Sci. U.S.A., 71, 1743-1747.
-
(1974)
Proc. Natl. Acad. Sci. U.S.A.
, vol.71
, pp. 1743-1747
-
-
Morrow, J.F.1
Cohen, S.N.2
Chang, A.C.3
Boyer, H.W.4
Goodman, H.M.5
Helling, R.B.6
-
56
-
-
74249108008
-
Personal reflections on the origins and emergence of recombinant DNA technology
-
Berg, P., Mertz, J.E. (2010) Personal reflections on the origins and emergence of recombinant DNA technology. Genetics, 184, 9-17.
-
(2010)
Genetics
, vol.184
, pp. 9-17
-
-
Berg, P.1
Mertz, J.E.2
-
57
-
-
84884630386
-
DNA cloning: A personal view after 40 years
-
Cohen, S.N. (2013) DNA cloning: a personal view after 40 years. Proc. Natl. Acad. Sci. U.S.A., 110, 15521-15529.
-
(2013)
Proc. Natl. Acad. Sci. U.S.A.
, vol.110
, pp. 15521-15529
-
-
Cohen, S.N.1
-
58
-
-
0016614406
-
Studies on the cleavage of bacteriophage lambda DNA with EcoRI restriction endonuclease
-
Thomas, M., Davis, R.W. (1975) Studies on the cleavage of bacteriophage lambda DNA with EcoRI restriction endonuclease. J. Mol. Biol., 91, 315-328.
-
(1975)
J. Mol. Biol.
, vol.91
, pp. 315-328
-
-
Thomas, M.1
Davis, R.W.2
-
59
-
-
0017202424
-
Kinetic studies on the cleavage of adenovirus DNA by restriction endonuclease EcoRI
-
Forsblom, S., Rigler, R., Ehrenberg, M., Pettersson, U., Philipson, L. (1976) Kinetic studies on the cleavage of adenovirus DNA by restriction endonuclease EcoRI. Nucleic Acids Res., 3, 3255-3269.
-
(1976)
Nucleic Acids Res.
, vol.3
, pp. 3255-3269
-
-
Forsblom, S.1
Rigler, R.2
Ehrenberg, M.3
Pettersson, U.4
Philipson, L.5
-
60
-
-
0019182556
-
The EcoRI restriction endonuclease with bacteriophage lambda DNA. Kinetic Studies
-
Halford, S.E., Johnson, N.P., Grinsted, J. (1980) The EcoRI restriction endonuclease with bacteriophage lambda DNA. Kinetic studies. Biochem. J., 191, 581-592.
-
(1980)
Biochem. J.
, vol.191
, pp. 581-592
-
-
Halford, S.E.1
Johnson, N.P.2
Grinsted, J.3
-
61
-
-
0020725086
-
An assay for the rates of cleavage of specific sites in DNA by restriction endonucleases: Its use to study the cleavage of phage lambda DNA by EcoRI and phage P22 DNA containing thymine or 5-bromouracil by HindIII
-
Berkner, K.L., Folk, W.R. (1983) An assay for the rates of cleavage of specific sites in DNA by restriction endonucleases: Its use to study the cleavage of phage lambda DNA by EcoRI and phage P22 DNA containing thymine or 5-bromouracil by HindIII. Anal. Biochem., 129, 446-456.
-
(1983)
Anal. Biochem.
, vol.129
, pp. 446-456
-
-
Berkner, K.L.1
Folk, W.R.2
-
62
-
-
0021753538
-
The influence of sequences adjacent to the recognition site on the cleavage of oligodeoxynucleotides by the EcoRI endonuclease
-
Alves, J., Pingoud, A., Haupt, W., Langowski, J., Peters, F., Maass, G., Wolff, C. (1984) The influence of sequences adjacent to the recognition site on the cleavage of oligodeoxynucleotides by the EcoRI endonuclease. Eur. J. Biochem., 140, 83-92.
-
(1984)
Eur. J. Biochem.
, vol.140
, pp. 83-92
-
-
Alves, J.1
Pingoud, A.2
Haupt, W.3
Langowski, J.4
Peters, F.5
Maass, G.6
Wolff, C.7
-
63
-
-
0026512375
-
Influence of enzyme-substrate contacts located outside the EcoRI recognition site on cleavage of duplex oligodeoxyribonucleotide substrates by EcoRI endonuclease
-
Van Cleve, M.D., Gumport, R.I. (1992) Influence of enzyme-substrate contacts located outside the EcoRI recognition site on cleavage of duplex oligodeoxyribonucleotide substrates by EcoRI endonuclease. Biochemistry, 31, 334-339.
-
(1992)
Biochemistry
, vol.31
, pp. 334-339
-
-
Van Cleve, M.D.1
Gumport, R.I.2
-
64
-
-
0026569359
-
The activity of the EcoRV restriction endonuclease is influenced by flanking DNA sequences both inside and outside the DNA-protein complex
-
Taylor, J.D., Halford, S.E. (1992) The activity of the EcoRV restriction endonuclease is influenced by flanking DNA sequences both inside and outside the DNA-protein complex. Biochemistry, 31, 90-97.
-
(1992)
Biochemistry
, vol.31
, pp. 90-97
-
-
Taylor, J.D.1
Halford, S.E.2
-
65
-
-
0019841035
-
DNA determinants important in sequence recognition by EcoRI endonuclease
-
Lu, A.L., Jack, W.E., Modrich, P. (1981) DNA determinants important in sequence recognition by EcoRI endonuclease. J. Biol. Chem., 256, 13200-13206.
-
(1981)
J. Biol. Chem.
, vol.256
, pp. 13200-13206
-
-
Lu, A.L.1
Jack, W.E.2
Modrich, P.3
-
66
-
-
0016823940
-
Restriction and modification of a self-complementary octanucleotide containing the EcoRI substrate
-
Greene, P.J., Poonian, M.S., Nussbaum, A.L., Tobias, L., Garfin, D.E., Boyer, H.W., Goodman, H.M. (1975) Restriction and modification of a self-complementary octanucleotide containing the EcoRI substrate. J. Mol. Biol., 99, 237-261.
-
(1975)
J. Mol. Biol.
, vol.99
, pp. 237-261
-
-
Greene, P.J.1
Poonian, M.S.2
Nussbaum, A.L.3
Tobias, L.4
Garfin, D.E.5
Boyer, H.W.6
Goodman, H.M.7
-
67
-
-
0019387686
-
Structure of a B-DNA dodecamer II. Influence of base sequence on helix structure
-
Dickerson, R.E., Drew, H.R. (1981) Structure of a B-DNA dodecamer II. Influence of base sequence on helix structure. J. Mol. Biol., 149, 761-786.
-
(1981)
J. Mol. Biol.
, vol.149
, pp. 761-786
-
-
Dickerson, R.E.1
Drew, H.R.2
-
68
-
-
0031047942
-
Influence of divalent cations on inner-arm mutants of restriction endonuclease EcoRI
-
Windolph, S., Alves, J. (1997) Influence of divalent cations on inner-arm mutants of restriction endonuclease EcoRI. Eur. J. Biochem., 244, 134-139.
-
(1997)
Eur. J. Biochem.
, vol.244
, pp. 134-139
-
-
Windolph, S.1
Alves, J.2
-
69
-
-
0032533367
-
Protein engineering of the restriction endonuclease EcoRV: Structure-guided design of enzyme variants that recognize the base pairs flanking the recognition site
-
Schottler, S., Wenz, C., Lanio, T., Jeltsch, A., Pingoud, A. (1998) Protein engineering of the restriction endonuclease EcoRV: structure-guided design of enzyme variants that recognize the base pairs flanking the recognition site. Eur. J. Biochem., 258, 184-191.
-
(1998)
Eur. J. Biochem.
, vol.258
, pp. 184-191
-
-
Schottler, S.1
Wenz, C.2
Lanio, T.3
Jeltsch, A.4
Pingoud, A.5
-
70
-
-
0000513006
-
Specificity of substrate recognition by the EcoRI restriction endonuclease
-
Polisky, B., Greene, P., Garfin, D.E., McCarthy, B.J., Goodman, H.M., Boyer, H.W. (1975) Specificity of substrate recognition by the EcoRI restriction endonuclease. Proc. Natl. Acad. Sci. U.S.A., 72, 3310-3314.
-
(1975)
Proc. Natl. Acad. Sci. U.S.A.
, vol.72
, pp. 3310-3314
-
-
Polisky, B.1
Greene, P.2
Garfin, D.E.3
McCarthy, B.J.4
Goodman, H.M.5
Boyer, H.W.6
-
71
-
-
0018035954
-
EcoRI activity: Enzyme modification or activation of accompanying endonuclease?
-
Tikchonenko, T.I., Karamov, E.V., Zavizion, B.A., Naroditsky, B.S. (1978) EcoRI activity: enzyme modification or activation of accompanying endonuclease? Gene, 4, 195-212.
-
(1978)
Gene
, vol.4
, pp. 195-212
-
-
Tikchonenko, T.I.1
Karamov, E.V.2
Zavizion, B.A.3
Naroditsky, B.S.4
-
72
-
-
0018842484
-
Alteration of the specificity of restriction endonucleases in the presence of organic solvents
-
Malyguine, E., Vannier, P., Yot, P. (1980) Alteration of the specificity of restriction endonucleases in the presence of organic solvents. Gene, 8, 163-177.
-
(1980)
Gene
, vol.8
, pp. 163-177
-
-
Malyguine, E.1
Vannier, P.2
Yot, P.3
-
73
-
-
0019321886
-
DNA site recognition and reduced specificity of the EcoRI endonuclease
-
Woodbury, C.P. Jr., Hagenbuchle, O., von Hippel, P.H. (1980) DNA site recognition and reduced specificity of the EcoRI endonuclease. J. Biol. Chem., 255, 11534-11546.
-
(1980)
J. Biol. Chem.
, vol.255
, pp. 11534-11546
-
-
Woodbury, Jr.C.P.1
Hagenbuchle, O.2
Von Hippel, P.H.3
-
74
-
-
0017811502
-
Altering the specificity of restriction endonuclease: Effect of replacing Mg2 +with Mn2+
-
Hsu, M., Berg, P. (1978) Altering the specificity of restriction endonuclease: effect of replacing Mg2 +with Mn2+. Biochemistry, 17, 131-138.
-
(1978)
Biochemistry
, vol.17
, pp. 131-138
-
-
Hsu, M.1
Berg, P.2
-
75
-
-
0019428484
-
Cation dependence of restriction endonuclease EcoRI activity
-
Woodhead, J.L., Bhave, N., Malcolm, D.B. (1981) Cation dependence of restriction endonuclease EcoRI activity. Eur. J. Biochem., 115, 293-296.
-
(1981)
Eur. J. Biochem.
, vol.115
, pp. 293-296
-
-
Woodhead, J.L.1
Bhave, N.2
Malcolm, D.B.3
-
76
-
-
0020435007
-
EcoRI specificity and hydrogen bonding
-
Rosenberg, J.M., Greene, P. (1982) EcoRI specificity and hydrogen bonding. DNA, 1, 117-124.
-
(1982)
DNA
, vol.1
, pp. 117-124
-
-
Rosenberg, J.M.1
Greene, P.2
-
77
-
-
0025367454
-
Accuracy of the EcoRI restriction endonuclease: Binding and cleavage studies with oligodeoxynucleotide substrates containing degenerate recognition sequences
-
Thielking, V., Alves, J., Fliess, A., Maass, G., Pingoud, A. (1990) Accuracy of the EcoRI restriction endonuclease: binding and cleavage studies with oligodeoxynucleotide substrates containing degenerate recognition sequences. Biochemistry, 29, 4682-4691.
-
(1990)
Biochemistry
, vol.29
, pp. 4682-4691
-
-
Thielking, V.1
Alves, J.2
Fliess, A.3
Maass, G.4
Pingoud, A.5
-
78
-
-
0017516083
-
Specificity of cleavage by a restriction nuclease from Bacillus subtilis
-
Heininger, K., Horz, W., Zachau, H.G. (1977) Specificity of cleavage by a restriction nuclease from Bacillus subtilis. Gene, 1, 291-303.
-
(1977)
Gene
, vol.1
, pp. 291-303
-
-
Heininger, K.1
Horz, W.2
Zachau, H.G.3
-
79
-
-
0018372034
-
Purification, properties and specificity of the restriction endonuclease from Bacillus stearothermophilus
-
Clarke, C.M., Hartley, B.S. (1979) Purification, properties and specificity of the restriction endonuclease from Bacillus stearothermophilus. Biochem. J., 177, 49-62.
-
(1979)
Biochem. J.
, vol.177
, pp. 49-62
-
-
Clarke, C.M.1
Hartley, B.S.2
-
80
-
-
0019332757
-
Sequence-specific endonuclease BamHI
-
George, J., Blakesley, R.W., Chirikjian, J.G. (1980) Sequence-specific endonuclease BamHI. J. Biol. Chem., 255, 6521-6524.
-
(1980)
J. Biol. Chem.
, vol.255
, pp. 6521-6524
-
-
George, J.1
Blakesley, R.W.2
Chirikjian, J.G.3
-
81
-
-
0022504314
-
Relaxed specificity of the EcoRV restriction endonuclease
-
Halford, S.E., Lovelady, B.M., McCallum, S.A. (1986) Relaxed specificity of the EcoRV restriction endonuclease. Gene, 41, 173-181.
-
(1986)
Gene
, vol.41
, pp. 173-181
-
-
Halford, S.E.1
Lovelady, B.M.2
McCallum, S.A.3
-
82
-
-
44449085373
-
The Fidelity Index provides a systematic quantitation of star activity of DNA restriction endonucleases
-
Wei, H., Therrien, C., Blanchard, A., Guan, S., Zhu, Z. (2008) The Fidelity Index provides a systematic quantitation of star activity of DNA restriction endonucleases. Nucleic Acids Res., 36, e50.
-
(2008)
Nucleic Acids Res.
, vol.36
-
-
Wei, H.1
Therrien, C.2
Blanchard, A.3
Guan, S.4
Zhu, Z.5
-
83
-
-
34250358629
-
R.KpnI, an HNH superfamily REase, exhibits differential discrimination at non-canonical sequences in the presence of Ca2+ and Mg2+
-
Saravanan, M., Vasu, K., Kanakaraj, R., Rao, D.N., Nagaraja, V. (2007) R.KpnI, an HNH superfamily REase, exhibits differential discrimination at non-canonical sequences in the presence of Ca2+ and Mg2+. Nucleic Acids Res., 35, 2777-2786.
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. 2777-2786
-
-
Saravanan, M.1
Vasu, K.2
Kanakaraj, R.3
Rao, D.N.4
Nagaraja, V.5
-
84
-
-
0024322164
-
Discrimination between DNA sequences by the EcoRV restriction endonuclease
-
Taylor, J.D., Halford, S.E. (1989) Discrimination between DNA sequences by the EcoRV restriction endonuclease. Biochemistry, 28, 6198-6207.
-
(1989)
Biochemistry
, vol.28
, pp. 6198-6207
-
-
Taylor, J.D.1
Halford, S.E.2
-
85
-
-
0029097035
-
Accuracy of the EcoRV restriction endonuclease: Binding and cleavage studies with oligodeoxynucleotide substrates containing degenerate recognition sequences
-
Alves, J., Selent, U., Wolfes, H. (1995) Accuracy of the EcoRV restriction endonuclease: binding and cleavage studies with oligodeoxynucleotide substrates containing degenerate recognition sequences. Biochemistry, 34, 11191-11197.
-
(1995)
Biochemistry
, vol.34
, pp. 11191-11197
-
-
Alves, J.1
Selent, U.2
Wolfes, H.3
-
86
-
-
0021909199
-
Spermidine increases the accuracy of type II restriction endonucleases. Suppression of cleavage at degenerate, non-symmetrical sites
-
Pingoud, A. (1985) Spermidine increases the accuracy of type II restriction endonucleases. Suppression of cleavage at degenerate, non-symmetrical sites. Eur. J. Biochem., 147, 105-109.
-
(1985)
Eur. J. Biochem.
, vol.147
, pp. 105-109
-
-
Pingoud, A.1
-
87
-
-
0028210538
-
Hydrostatic pressure reverses osmotic pressure effects on the specificity of EcoRI-DNA interactions
-
Robinson, C.R., Sligar, S.G. (1994) Hydrostatic pressure reverses osmotic pressure effects on the specificity of EcoRI-DNA interactions. Biochemistry, 33, 3787-3793.
-
(1994)
Biochemistry
, vol.33
, pp. 3787-3793
-
-
Robinson, C.R.1
Sligar, S.G.2
-
88
-
-
84890058227
-
Increasing cleavage specificity and activity of restriction endonuclease KpnI
-
Vasu, K., Nagamalleswari, E., Zahran, M., Imhof, P., Xu, S.Y., Zhu, Z., Chan, S.H., Nagaraja, V. (2013) Increasing cleavage specificity and activity of restriction endonuclease KpnI. Nucleic Acids Res., 41, 9812-9824.
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. 9812-9824
-
-
Vasu, K.1
Nagamalleswari, E.2
Zahran, M.3
Imhof, P.4
Xu, S.Y.5
Zhu, Z.6
Chan, S.H.7
Nagaraja, V.8
-
89
-
-
0015482536
-
Restriction and modification of DNA
-
Meselson, M., Yuan, R., Heywood, J. (1972) Restriction and modification of DNA. Annu. Rev. Biochem., 41, 447-466.
-
(1972)
Annu. Rev. Biochem.
, vol.41
, pp. 447-466
-
-
Meselson, M.1
Yuan, R.2
Heywood, J.3
-
90
-
-
56049119613
-
How PspGI, catalytic domain of EcoRII and Ecl18kI acquire specificities for different DNA targets
-
Tamulaitis, G., Zaremba, M., Szczepanowski, R.H., Bochtler, M., Siksnys, V. (2008) How PspGI, catalytic domain of EcoRII and Ecl18kI acquire specificities for different DNA targets. Nucleic Acids Res., 36, 6101-6108.
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 6101-6108
-
-
Tamulaitis, G.1
Zaremba, M.2
Szczepanowski, R.H.3
Bochtler, M.4
Siksnys, V.5
-
91
-
-
0000127073
-
Sequence-specific recognition of double helical nucleic acids by proteins
-
Seeman, N.C., Rosenberg, J.M., Rich, A. (1976) Sequence-specific recognition of double helical nucleic acids by proteins. Proc. Natl. Acad. Sci. U.S.A., 73, 804-808.
-
(1976)
Proc. Natl. Acad. Sci. U.S.A.
, vol.73
, pp. 804-808
-
-
Seeman, N.C.1
Rosenberg, J.M.2
Rich, A.3
-
92
-
-
0015985638
-
Physical identity of the SV40 deoxyribonucleic acid sequence recognized by the EcoRI restriction endonuclease and modification methylase
-
Dugaiczyk, A., Hedgpeth, J., Boyer, H.W., Goodman, H.M. (1974) Physical identity of the SV40 deoxyribonucleic acid sequence recognized by the EcoRI restriction endonuclease and modification methylase. Biochemistry, 13, 503-512.
-
(1974)
Biochemistry
, vol.13
, pp. 503-512
-
-
Dugaiczyk, A.1
Hedgpeth, J.2
Boyer, H.W.3
Goodman, H.M.4
-
93
-
-
0020480208
-
Digestion of highly modified bacteriophage DNA by restriction endonucleases
-
Huang, L.H., Farnet, C.M., Ehrlich, K.C., Ehrlich, M. (1982) Digestion of highly modified bacteriophage DNA by restriction endonucleases. Nucleic Acids Res., 10, 1579-1591.
-
(1982)
Nucleic Acids Res.
, vol.10
, pp. 1579-1591
-
-
Huang, L.H.1
Farnet, C.M.2
Ehrlich, K.C.3
Ehrlich, M.4
-
94
-
-
0016632263
-
Cleavage of nonglucosylated bacteriophage T4 deoxyribonucleic acid by restriction endonuclease EcoRI
-
Kaplan, D.A., Nierlich, D.P. (1975) Cleavage of nonglucosylated bacteriophage T4 deoxyribonucleic acid by restriction endonuclease EcoRI. J. Biol. Chem., 250, 2395-2397.
-
(1975)
J. Biol. Chem.
, vol.250
, pp. 2395-2397
-
-
Kaplan, D.A.1
Nierlich, D.P.2
-
95
-
-
0017666266
-
Molecular cloning of fragments of bacteriophage T4 DNA
-
Wilson, G.G., Tanyashin, V.I., Murray, N.E. (1977) Molecular cloning of fragments of bacteriophage T4 DNA. Mol. Gen. Genet., 156, 203-214.
-
(1977)
Mol. Gen. Genet.
, vol.156
, pp. 203-214
-
-
Wilson, G.G.1
Tanyashin, V.I.2
Murray, N.E.3
-
96
-
-
0017379103
-
EcoRI cleavage and methylation of dnas containing modified pyrimidines in the recognition sequence
-
Berkner, K.L., Folk, W.R. (1977) EcoRI cleavage and methylation of DNAs containing modified pyrimidines in the recognition sequence. J. Biol. Chem., 252, 3185-3193.
-
(1977)
J. Biol. Chem.
, vol.252
, pp. 3185-3193
-
-
Berkner, K.L.1
Folk, W.R.2
-
97
-
-
0017692551
-
Role of the 2-amino group of deoxyguanosine in sequence recognition by EcoRI restriction and modification enzymes
-
Modrich, P., Rubin, R.A. (1977) Role of the 2-amino group of deoxyguanosine in sequence recognition by EcoRI restriction and modification enzymes. J. Biol. Chem., 252, 7273-7278.
-
(1977)
J. Biol. Chem.
, vol.252
, pp. 7273-7278
-
-
Modrich, P.1
Rubin, R.A.2
-
98
-
-
33845556076
-
Synthesis of deoxyoligonucleotides on a polymer support
-
Matteucci, M.D., Caruthers, M.H. (1981) Synthesis of deoxyoligonucleotides on a polymer support. J. Am. Chem. Soc., 103, 3185-3191.
-
(1981)
J. Am. Chem. Soc.
, vol.103
, pp. 3185-3191
-
-
Matteucci, M.D.1
Caruthers, M.H.2
-
99
-
-
0025947116
-
The highly homologous isoschizomers RsrI endonuclease and EcoRI endonuclease do not recognize their target sequence identically
-
Aiken, C.R., McLaughlin, L.W., Gumport, R.I. (1991) The highly homologous isoschizomers RsrI endonuclease and EcoRI endonuclease do not recognize their target sequence identically. J. Biol. Chem., 266, 19070-19078.
-
(1991)
J. Biol. Chem.
, vol.266
, pp. 19070-19078
-
-
Aiken, C.R.1
McLaughlin, L.W.2
Gumport, R.I.3
-
100
-
-
0022910040
-
The effects of base analogue substitutions on the cleavage by the EcoRI restriction endonuclease of octadeoxyribonucleotides containing modified EcoRI recognition sequences
-
Brennan, C.A., Van Cleve, M.D., Gumport, R.I. (1986) The effects of base analogue substitutions on the cleavage by the EcoRI restriction endonuclease of octadeoxyribonucleotides containing modified EcoRI recognition sequences. J. Biol. Chem., 261, 7270-7278.
-
(1986)
J. Biol. Chem.
, vol.261
, pp. 7270-7278
-
-
Brennan, C.A.1
Van Cleve, M.D.2
Gumport, R.I.3
-
101
-
-
0023056609
-
Role of thymidine residues in DNA recognition by the EcoRI and EcoRV restriction endonucleases
-
Fliess, A., Wolfes, H., Rosenthal, A., Schwellnus, K., Blocker, H., Frank, R., Pingoud, A. (1986) Role of thymidine residues in DNA recognition by the EcoRI and EcoRV restriction endonucleases. Nucleic Acids Res., 14, 3463-3474.
-
(1986)
Nucleic Acids Res.
, vol.14
, pp. 3463-3474
-
-
Fliess, A.1
Wolfes, H.2
Rosenthal, A.3
Schwellnus, K.4
Blocker, H.5
Frank, R.6
Pingoud, A.7
-
102
-
-
0018980969
-
The interaction of the EcoRI restriction endonuclease with its substrate: A physico-chemical study employing natural and synthetic oligonucleotides and polynucleotides
-
Goppelt, M., Pingoud, A., Maass, G., Mayer, H., Koster, H., Frank, R. (1980) The interaction of the EcoRI restriction endonuclease with its substrate: a physico-chemical study employing natural and synthetic oligonucleotides and polynucleotides. Eur. J. Biochem., 104, 101-107.
-
(1980)
Eur. J. Biochem.
, vol.104
, pp. 101-107
-
-
Goppelt, M.1
Pingoud, A.2
Maass, G.3
Mayer, H.4
Koster, H.5
Frank, R.6
-
103
-
-
0023878403
-
Investigation of the complexes of EcoRI endonuclease with decanucleotides containing canonical and modified recognition sequences using fluorescence and optical detection of magnetic resonance spectroscopy
-
Jhon, N.I., Casas-Finet, J.R., Maki, A.H., Modrich, P. (1988) Investigation of the complexes of EcoRI endonuclease with decanucleotides containing canonical and modified recognition sequences using fluorescence and optical detection of magnetic resonance spectroscopy. Biochim. Biophys. Acta, 949, 189-194.
-
(1988)
Biochim. Biophys. Acta
, vol.949
, pp. 189-194
-
-
Jhon, N.I.1
Casas-Finet, J.R.2
Maki, A.H.3
Modrich, P.4
-
104
-
-
0026803189
-
Application of phosphate-backbone-modified oligonucleotides in the studies on EcoRI endonuclease mechanism of action
-
Koziolkiewicz, M., Stec, W.J. (1992) Application of phosphate-backbone- modified oligonucleotides in the studies on EcoRI endonuclease mechanism of action. Biochemistry, 31, 9460-9466.
-
(1992)
Biochemistry
, vol.31
, pp. 9460-9466
-
-
Koziolkiewicz, M.1
Stec, W.J.2
-
105
-
-
0026487068
-
Steroselective interaction with chiral phosphorothioates at the central DNA kink of the EcoRI endonuclease-GAATTC complex
-
Lesser, D.R., Grajkowski, A., Kurpiewski, M.R., Koziolkiewicz, M., Stec, W.J., Jacobson, L.J. (1992) Steroselective interaction with chiral phosphorothioates at the central DNA kink of the EcoRI endonuclease-GAATTC complex. J. Biol. Chem., 267, 24810-24818.
-
(1992)
J. Biol. Chem.
, vol.267
, pp. 24810-24818
-
-
Lesser, D.R.1
Grajkowski, A.2
Kurpiewski, M.R.3
Koziolkiewicz, M.4
Stec, W.J.5
Jacobson, L.J.6
-
106
-
-
0023658599
-
Effects of functional group changes in the EcoRI recognition site on the cleavage reaction catalyzed by the endonuclease
-
McLaughlin, L.W., Benseler, F., Graeser, E., Piel, N., Scholtissek, S. (1987) Effects of functional group changes in the EcoRI recognition site on the cleavage reaction catalyzed by the endonuclease. Biochemistry, 26, 7238-7245.
-
(1987)
Biochemistry
, vol.26
, pp. 7238-7245
-
-
McLaughlin, L.W.1
Benseler, F.2
Graeser, E.3
Piel, N.4
Scholtissek, S.5
-
107
-
-
0021763045
-
Recognition by restriction endonuclease EcoRI of deoxyoctanucleotides containing modified sugar moieties
-
Ohtsuka, E., Ishino, Y., Ibaraki, K., Ikehara, M. (1984) Recognition by restriction endonuclease EcoRI of deoxyoctanucleotides containing modified sugar moieties. Eur. J. Biochem., 139, 447-450.
-
(1984)
Eur. J. Biochem.
, vol.139
, pp. 447-450
-
-
Ohtsuka, E.1
Ishino, Y.2
Ibaraki, K.3
Ikehara, M.4
-
108
-
-
0026755386
-
A new affinity reagent for the site-specific, covalent attachment of DNA to active-site nucleophiles: Application to the EcoRI and RsrI restriction and modification enzymes
-
Purmal, A.A., Shabarova, Z.A., Gumport, R.I. (1992) A new affinity reagent for the site-specific, covalent attachment of DNA to active-site nucleophiles: application to the EcoRI and RsrI restriction and modification enzymes. Nucleic Acids Res., 20, 3713-3719.
-
(1992)
Nucleic Acids Res.
, vol.20
, pp. 3713-3719
-
-
Purmal, A.A.1
Shabarova, Z.A.2
Gumport, R.I.3
-
109
-
-
0022460696
-
Cross-linking of bromodeoxyuridine-substituted oligonucleotides to the EcoRI and EcoRV restriction endonucleases
-
Wolfes, H., Fliess, A., Winkler, F., Pingoud, A. (1986) Cross-linking of bromodeoxyuridine-substituted oligonucleotides to the EcoRI and EcoRV restriction endonucleases. Eur. J. Biochem., 159, 267-273.
-
(1986)
Eur. J. Biochem.
, vol.159
, pp. 267-273
-
-
Wolfes, H.1
Fliess, A.2
Winkler, F.3
Pingoud, A.4
-
110
-
-
0018786473
-
The effects of substituted pyrimidines in DNAs on cleavage by sequence-specific endonucleases
-
Berkner, K.L., Folk, W.R. (1979) The effects of substituted pyrimidines in DNAs on cleavage by sequence-specific endonucleases. J. Biol. Chem., 254, 2551-2560.
-
(1979)
J. Biol. Chem.
, vol.254
, pp. 2551-2560
-
-
Berkner, K.L.1
Folk, W.R.2
-
111
-
-
0021888141
-
A comparison of the structural requirements for DNA cleavage by the isoschizomers HaeIII, BspRI and BsuRI
-
Wolfes, H., Fliess, A., Pingoud, A. (1985) A comparison of the structural requirements for DNA cleavage by the isoschizomers HaeIII, BspRI and BsuRI. Eur. J. Biochem., 150, 105-110.
-
(1985)
Eur. J. Biochem.
, vol.150
, pp. 105-110
-
-
Wolfes, H.1
Fliess, A.2
Pingoud, A.3
-
112
-
-
0021228511
-
The stereochemical course of the restriction endonuclease EcoRI-catalyzed reaction
-
Connolly, B.A., Eckstein, F., Pingoud, A. (1984) The stereochemical course of the restriction endonuclease EcoRI-catalyzed reaction. J. Biol. Chem., 259, 10760-10763.
-
(1984)
J. Biol. Chem.
, vol.259
, pp. 10760-10763
-
-
Connolly, B.A.1
Eckstein, F.2
Pingoud, A.3
-
113
-
-
0027218657
-
Substrate-assisted catalysis in the cleavage of DNA by the EcoRI and EcoRV restriction enzymes
-
Jeltsch, A., Alves, J., Wolfes, H., Maass, G., Pingoud, A. (1993) Substrate-assisted catalysis in the cleavage of DNA by the EcoRI and EcoRV restriction enzymes. Proc. Natl. Acad. Sci. U. S.A., 90, 8499-8503.
-
(1993)
Proc. Natl. Acad. Sci. U. S.A.
, vol.90
, pp. 8499-8503
-
-
Jeltsch, A.1
Alves, J.2
Wolfes, H.3
Maass, G.4
Pingoud, A.5
-
114
-
-
0027220687
-
Facilitated distortion of the DNA site enhances EcoRI endonuclease-DNA recognition
-
Lesser, D.R., Kurpiewski, M.R., Waters, T., Connolly, B.A., Jen-Jacobson, L. (1993) Facilitated distortion of the DNA site enhances EcoRI endonuclease-DNA recognition. Proc. Natl. Acad. Sci. U.S.A., 90, 7548-7552.
-
(1993)
Proc. Natl. Acad. Sci. U.S.A.
, vol.90
, pp. 7548-7552
-
-
Lesser, D.R.1
Kurpiewski, M.R.2
Waters, T.3
Connolly, B.A.4
Jen-Jacobson, L.5
-
115
-
-
0032565129
-
Distorting duplex DNA by dimethylenesulfone substitution: A new class of "transition state analog inhibitors for restriction enzymes
-
Blattler, M.O., Wenz, C., Pingoud, A., Benner, S.A. (1998) Distorting duplex DNA by dimethylenesulfone substitution: a new class of "transition state analog inhibitors for restriction enzymes. J. Am. Chem. Soc., 120, 2674-2675.
-
(1998)
J. Am. Chem. Soc.
, vol.120
, pp. 2674-2675
-
-
Blattler, M.O.1
Wenz, C.2
Pingoud, A.3
Benner, S.A.4
-
116
-
-
0026687132
-
Stereochemical outcome of the hydrolysis reaction catalyzed by the EcoRV restriction endonuclease
-
Grasby, J.A., Connolly, B.A. (1992) Stereochemical outcome of the hydrolysis reaction catalyzed by the EcoRV restriction endonuclease. Biochemistry, 31, 7855-7861.
-
(1992)
Biochemistry
, vol.31
, pp. 7855-7861
-
-
Grasby, J.A.1
Connolly, B.A.2
-
117
-
-
0026355409
-
Base analogs in study of restriction enzyme-DNA interactions
-
Aiken, C.R., Gumport, R.I. (1991) Base analogs in study of restriction enzyme-DNA interactions. Methods Enzymol., 208, 433-457.
-
(1991)
Methods Enzymol.
, vol.208
, pp. 433-457
-
-
Aiken, C.R.1
Gumport, R.I.2
-
118
-
-
0013501084
-
Ultraviolet footprinting accurately maps sequence-specific contacts and DNA kinking in the EcoRI endonuclease-DNA complex
-
Becker, M.M., Lesser, D., Kurpiewski, M., Baranger, A., Jen-Jacobson, L. (1988) Ultraviolet footprinting accurately maps sequence-specific contacts and DNA kinking in the EcoRI endonuclease-DNA complex. Proc. Natl. Acad. Sci. U.S.A., 85, 6247-6251.
-
(1988)
Proc. Natl. Acad. Sci. U.S.A.
, vol.85
, pp. 6247-6251
-
-
Becker, M.M.1
Lesser, D.2
Kurpiewski, M.3
Baranger, A.4
Jen-Jacobson, L.5
-
119
-
-
0024805570
-
High resolution footprinting of EcoRI and distamycin with Rh(phi) 2(bpy) 3+, A new photofootprinting reagent
-
Uchida, K., Pyle, A.M., Morii, T., Barton, J.K. (1989) High resolution footprinting of EcoRI and distamycin with Rh(phi)2(bpy)3+, a new photofootprinting reagent. Nucleic Acids Res., 17, 10259-10279.
-
(1989)
Nucleic Acids Res.
, vol.17
, pp. 10259-10279
-
-
Uchida, K.1
Pyle, A.M.2
Morii, T.3
Barton, J.K.4
-
120
-
-
0030911133
-
Recognition and cleavage of DNA by type-II restriction endonucleases
-
Pingoud, A., Jeltsch, A. (1997) Recognition and cleavage of DNA by type-II restriction endonucleases. Eur. J. Biochem., 246, 1-22.
-
(1997)
Eur. J. Biochem.
, vol.246
, pp. 1-22
-
-
Pingoud, A.1
Jeltsch, A.2
-
121
-
-
0017130530
-
EcoRI endonuclease. Physical and catalytic properties of the homogeneous enzyme
-
Modrich, P., Zabel, D. (1976) EcoRI endonuclease. Physical and catalytic properties of the homogeneous enzyme. J. Biol. Chem., 251, 5866-5874.
-
(1976)
J. Biol. Chem.
, vol.251
, pp. 5866-5874
-
-
Modrich, P.1
Zabel, D.2
-
122
-
-
10244274757
-
The EcoRI restriction endonuclease
-
Greene, P.J., Betlach, M.C., Boyer, H.W., Goodman, H.M. (1974) The EcoRI restriction endonuclease. Methods Mol. Biol., 7, 87-105.
-
(1974)
Methods Mol. Biol.
, vol.7
, pp. 87-105
-
-
Greene, P.J.1
Betlach, M.C.2
Boyer, H.W.3
Goodman, H.M.4
-
123
-
-
0019887395
-
Transient cleavage kinetics of the EcoRI restriction endonuclease measured in a pulsed quench-flow apparatus: Enzyme concentration-dependent activity change
-
Langowski, J., Urbanke, C., Pingoud, A., Maass, G. (1981) Transient cleavage kinetics of the EcoRI restriction endonuclease measured in a pulsed quench-flow apparatus: enzyme concentration-dependent activity change. Nucleic Acids Res., 9, 3483-3490.
-
(1981)
Nucleic Acids Res.
, vol.9
, pp. 3483-3490
-
-
Langowski, J.1
Urbanke, C.2
Pingoud, A.3
Maass, G.4
-
124
-
-
0019877052
-
Reaction kinetics of some important site-specific endonucleases
-
Hinsch, B., Kula, M.R. (1981) Reaction kinetics of some important site-specific endonucleases. Nucleic Acids Res., 9, 3159-3174.
-
(1981)
Nucleic Acids Res.
, vol.9
, pp. 3159-3174
-
-
Hinsch, B.1
Kula, M.R.2
-
125
-
-
77957219349
-
Physical and kinetic properties of the site specific endonuclease BamHI from Bacillus amyloliquefaciens
-
Hinsch, B., Kula, M.R. (1980) Physical and kinetic properties of the site specific endonuclease BamHI from Bacillus amyloliquefaciens. Nucleic Acids Res., 8, 623-633.
-
(1980)
Nucleic Acids Res.
, vol.8
, pp. 623-633
-
-
Hinsch, B.1
Kula, M.R.2
-
126
-
-
0018475926
-
The reactions of the EcoRI and other restriction endonucleases
-
Halford, S.E., Johnson, N.P., Grinsted, J. (1979) The reactions of the EcoRI and other restriction endonucleases. Biochem. J., 179, 353-365.
-
(1979)
Biochem. J.
, vol.179
, pp. 353-365
-
-
Halford, S.E.1
Johnson, N.P.2
Grinsted, J.3
-
127
-
-
29244476241
-
Mva1269I: A monomeric type IIS restriction endonuclease from micrococcus varians with two EcoRI- and FokI-like catalytic domains
-
Armalyte, E., Bujnicki, J.M., Giedriene, J., Gasiunas, G., Kosinski, J., Lubys, A. (2005) Mva1269I: a monomeric type IIS restriction endonuclease from micrococcus varians with two EcoRI- and FokI-like catalytic domains. J. Biol. Chem., 280, 41584-41594.
-
(2005)
J. Biol. Chem.
, vol.280
, pp. 41584-41594
-
-
Armalyte, E.1
Bujnicki, J.M.2
Giedriene, J.3
Gasiunas, G.4
Kosinski, J.5
Lubys, A.6
-
128
-
-
17144383262
-
Cleavage of individual DNA strands by the different subunits of the heterodimeric restriction endonuclease BbvCI
-
Bellamy, S.R.W., Milsom, S.E., Scott, D.J., Daniels, L.E., Wilson, G.G., Halford, S.E. (2005) Cleavage of individual DNA strands by the different subunits of the heterodimeric restriction endonuclease BbvCI. J. Mol. Biol., 348, 641-653.
-
(2005)
J. Mol. Biol.
, vol.348
, pp. 641-653
-
-
Bellamy, S.R.W.1
Milsom, S.E.2
Scott, D.J.3
Daniels, L.E.4
Wilson, G.G.5
Halford, S.E.6
-
129
-
-
0017682810
-
Relaxed circular SV40 DNA as cleavage intermediate of two restriction endonucleases
-
Ruben, G., Spielman, P., Tu, C.P., Jay, E., Siegel, B., Wu, R. (1977) Relaxed circular SV40 DNA as cleavage intermediate of two restriction endonucleases. Nucleic Acids Res., 4, 1803-1813.
-
(1977)
Nucleic Acids Res.
, vol.4
, pp. 1803-1813
-
-
Ruben, G.1
Spielman, P.2
Tu, C.P.3
Jay, E.4
Siegel, B.5
Wu, R.6
-
130
-
-
17144381324
-
Structure of HinP1I endonuclease reveals a striking similarity to the monomeric restriction enzyme MspI
-
Yang, Z., Horton, J.R., Maunus, R., Wilson, G.G., Roberts, R.J., Cheng, X. (2005) Structure of HinP1I endonuclease reveals a striking similarity to the monomeric restriction enzyme MspI. Nucleic Acids Res., 33, 1892-1901.
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 1892-1901
-
-
Yang, Z.1
Horton, J.R.2
Maunus, R.3
Wilson, G.G.4
Roberts, R.J.5
Cheng, X.6
-
131
-
-
34247863978
-
Restriction endonuclease MvaI is a monomer that recognizes its target sequence asymmetrically
-
Kaus-Drobek, M., Czapinska, H., Sokolowska, M., Tamulaitis, G., Szczepanowski, R.H., Urbanke, C., Siksnys, V., Bochtler, M. (2007) Restriction endonuclease MvaI is a monomer that recognizes its target sequence asymmetrically. Nucleic Acids Res., 35, 2035-2046.
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. 2035-2046
-
-
Kaus-Drobek, M.1
Czapinska, H.2
Sokolowska, M.3
Tamulaitis, G.4
Szczepanowski, R.H.5
Urbanke, C.6
Siksnys, V.7
Bochtler, M.8
-
132
-
-
34248153723
-
Monomeric restriction endonuclease BcnI in the Apo form and in an asymmetric complex with target DNA
-
Sokolowska, M., Kaus-Drobek, M., Czapinska, H., Tamulaitis, G., Szczepanowski, R.H., Urbanke, C., Siksnys, V., Bochtler, M. (2007) Monomeric restriction endonuclease BcnI in the Apo form and in an asymmetric complex with target DNA. J. Mol. Biol., 369, 722-734.
-
(2007)
J. Mol. Biol.
, vol.369
, pp. 722-734
-
-
Sokolowska, M.1
Kaus-Drobek, M.2
Czapinska, H.3
Tamulaitis, G.4
Szczepanowski, R.H.5
Urbanke, C.6
Siksnys, V.7
Bochtler, M.8
-
133
-
-
80455178757
-
Target site cleavage by the monomeric restriction enzyme BcnI requires translocation to a random DNA sequence and a switch in enzyme orientation
-
Sasnauskas, G., Kostiuk, G., Tamulaitis, G., Siksnys, V. (2011) Target site cleavage by the monomeric restriction enzyme BcnI requires translocation to a random DNA sequence and a switch in enzyme orientation. Nucleic Acids Res., 39, 8844-8856.
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. 8844-8856
-
-
Sasnauskas, G.1
Kostiuk, G.2
Tamulaitis, G.3
Siksnys, V.4
-
134
-
-
0014965617
-
Lac repressor-operator interaction. I. Equilibrium studies
-
Riggs, A.D., Suzuki, H., Bourgeois, S. (1970) Lac repressor-operator interaction. I. Equilibrium studies. J. Mol. Biol., 48, 67-83.
-
(1970)
J. Mol. Biol.
, vol.48
, pp. 67-83
-
-
Riggs, A.D.1
Suzuki, H.2
Bourgeois, S.3
-
135
-
-
0014030818
-
Studies on the binding of RNA polymerase to polynucleotides
-
Jones, O.W., Berg, P. (1966) Studies on the binding of RNA polymerase to polynucleotides. J. Mol. Biol., 22, 199-209.
-
(1966)
J. Mol. Biol.
, vol.22
, pp. 199-209
-
-
Jones, O.W.1
Berg, P.2
-
136
-
-
0019733061
-
Structures and mechanisms of EcoRI DNA restriction and modification enzymes
-
Jack, W.E., Rubin, R.A., Newman, A., Modrich, P. (1981) Structures and mechanisms of EcoRI DNA restriction and modification enzymes. Gene Amplif. Anal., 1, 165-179.
-
(1981)
Gene Amplif. Anal.
, vol.1
, pp. 165-179
-
-
Jack, W.E.1
Rubin, R.A.2
Newman, A.3
Modrich, P.4
-
137
-
-
0019733066
-
The structure and function of the EcoRI restriction endonuclease
-
Rosenberg, J.M., Boyer, H.W., Greene, P. (1981) The structure and function of the EcoRI restriction endonuclease. Gene Amplif. Anal., 1, 131-164.
-
(1981)
Gene Amplif. Anal.
, vol.1
, pp. 131-164
-
-
Rosenberg, J.M.1
Boyer, H.W.2
Greene, P.3
-
138
-
-
0019186907
-
The EcoRI restriction endonuclease with bacteriophage lambda DNA. Equilibrium binding sites
-
Halford, S.E., Johnson, N.P. (1980) The EcoRI restriction endonuclease with bacteriophage lambda DNA. Equilibrium binding sites. Biochem. J., 191, 593-604.
-
(1980)
Biochem. J.
, vol.191
, pp. 593-604
-
-
Halford, S.E.1
Johnson, N.P.2
-
139
-
-
0018601460
-
Structures and mechanisms of DNA restriction and modification enzymes
-
Modrich, P. (1979) Structures and mechanisms of DNA restriction and modification enzymes. Q. Rev. Biophys., 12, 315-369.
-
(1979)
Q. Rev. Biophys.
, vol.12
, pp. 315-369
-
-
Modrich, P.1
-
140
-
-
0018977488
-
Restriction endonuclease EcoRI binds non-specifically to deoxyribonucleic acid
-
Woodhead, J.L., Malcolm, A.D.B. (1980) Restriction endonuclease EcoRI binds non-specifically to deoxyribonucleic acid. Biochem. Soc. Trans., 8, 90-91.
-
(1980)
Biochem. Soc. Trans.
, vol.8
, pp. 90-91
-
-
Woodhead, J.L.1
Malcolm, A.D.B.2
-
141
-
-
0019332008
-
Inhibition of EcoRI action by polynucleotides. A characterization of the non-specific binding of the enzyme to DNA
-
Langowski, J., Pingoud, A., Goppelt, M., Maass, G. (1980) Inhibition of EcoRI action by polynucleotides. A characterization of the non-specific binding of the enzyme to DNA. Nucleic Acids Res., 8, 4727-4736.
-
(1980)
Nucleic Acids Res.
, vol.8
, pp. 4727-4736
-
-
Langowski, J.1
Pingoud, A.2
Goppelt, M.3
Maass, G.4
-
142
-
-
0025889005
-
EcoRV restriction endonuclease binds all DNA sequences with equal affinity
-
Taylor, J.D., Badcoe, I.G., Clarke, A.R., Halford, S.E. (1991) EcoRV restriction endonuclease binds all DNA sequences with equal affinity. Biochemistry, 30, 8743-8753.
-
(1991)
Biochemistry
, vol.30
, pp. 8743-8753
-
-
Taylor, J.D.1
Badcoe, I.G.2
Clarke, A.R.3
Halford, S.E.4
-
143
-
-
0019878376
-
Equilibria and kinetics of lac repressor-operator interactions by polyacrylamide gel electrophoresis
-
Fried, M., Crothers, D.M. (1981) Equilibria and kinetics of lac repressor-operator interactions by polyacrylamide gel electrophoresis. Nucleic Acids Res., 9, 6505-6525.
-
(1981)
Nucleic Acids Res.
, vol.9
, pp. 6505-6525
-
-
Fried, M.1
Crothers, D.M.2
-
144
-
-
0019877067
-
A gel electrophoresis method for quantifying the binding of proteins to specific DNA regions: Application to components of the Escherichia coli lactose operon regulatory system
-
Garner, M.M., Revzin, A. (1981) A gel electrophoresis method for quantifying the binding of proteins to specific DNA regions: application to components of the Escherichia coli lactose operon regulatory system. Nucleic Acids Res., 9, 3047-3060.
-
(1981)
Nucleic Acids Res.
, vol.9
, pp. 3047-3060
-
-
Garner, M.M.1
Revzin, A.2
-
145
-
-
0026611083
-
Mg2+ confers DNA binding specificity to the EcoRV restriction endonuclease
-
Thielking, V., Selent, U., Kohler, E., Landgraf, Z., Wolfes, H., Alves, J., Pingoud, A. (1992) Mg2+ confers DNA binding specificity to the EcoRV restriction endonuclease. Biochemistry, 31, 3727-3732.
-
(1992)
Biochemistry
, vol.31
, pp. 3727-3732
-
-
Thielking, V.1
Selent, U.2
Kohler, E.3
Landgraf, Z.4
Wolfes, H.5
Alves, J.6
Pingoud, A.7
-
146
-
-
0029910813
-
Differences in water release for the binding of EcoRI to specific and nonspecific DNA sequences
-
Sidorova, N.Y., Rau, D.C. (1996) Differences in water release for the binding of EcoRI to specific and nonspecific DNA sequences. Proc. Natl. Acad. Sci. U. S.A., 93, 12272-12277.
-
(1996)
Proc. Natl. Acad. Sci. U. S.A.
, vol.93
, pp. 12272-12277
-
-
Sidorova, N.Y.1
Rau, D.C.2
-
147
-
-
0023528415
-
Mechanism of specific site location and DNA cleavage by EcoRI endonuclease
-
Terry, B.J., Jack, W.E., Modrich, P. (1987) Mechanism of specific site location and DNA cleavage by EcoRI endonuclease. Gene Amplif. Anal., 5, 103-118.
-
(1987)
Gene Amplif. Anal.
, vol.5
, pp. 103-118
-
-
Terry, B.J.1
Jack, W.E.2
Modrich, P.3
-
148
-
-
0020160863
-
Involvement of outside DNA sequences in the major kinetic path by which EcoRI endonuclease locates and leaves its recognition sequence
-
Jack, W.E., Terry, B.J., Modrich, P. (1982) Involvement of outside DNA sequences in the major kinetic path by which EcoRI endonuclease locates and leaves its recognition sequence. Proc. Natl. Acad. Sci. U.S.A., 79, 4010-4014.
-
(1982)
Proc. Natl. Acad. Sci. U.S.A.
, vol.79
, pp. 4010-4014
-
-
Jack, W.E.1
Terry, B.J.2
Modrich, P.3
-
149
-
-
0019887628
-
Diffusion-driven mechanisms of protein translocation on nucleic acids. 1. Models and theory
-
Berg, O.G., Winter, R.B., von Hippel, P.H. (1981) Diffusion-driven mechanisms of protein translocation on nucleic acids. 1. Models and theory. Biochemistry, 20, 6929-6948.
-
(1981)
Biochemistry
, vol.20
, pp. 6929-6948
-
-
Berg, O.G.1
Winter, R.B.2
Von Hippel, P.H.3
-
150
-
-
0016302334
-
Diffusion controlled reaction rates in spheroidal geometry. Application to repressor-operator association and membrane bound enzymes
-
Richter, P.H., Eigen, M. (1974) Diffusion controlled reaction rates in spheroidal geometry. Application to repressor-operator association and membrane bound enzymes. Biophys. Chem., 2, 255-263.
-
(1974)
Biophys. Chem.
, vol.2
, pp. 255-263
-
-
Richter, P.H.1
Eigen, M.2
-
151
-
-
0021844161
-
Linear diffusion of restriction endonucleases on DNA
-
Ehbrecht, H.J., Pingoud, A., Urbanke, C., Maass, G., Gualerzi, C. (1985) Linear diffusion of restriction endonucleases on DNA. J. Biol. Chem., 260, 6160-6166.
-
(1985)
J. Biol. Chem.
, vol.260
, pp. 6160-6166
-
-
Ehbrecht, H.J.1
Pingoud, A.2
Urbanke, C.3
Maass, G.4
Gualerzi, C.5
-
152
-
-
0023034951
-
Differences in the kinetic properties of BamHI endonuclease and methylase with linear DNA substrates
-
Nardone, G., George, J., Chirikjian, J.G. (1986) Differences in the kinetic properties of BamHI endonuclease and methylase with linear DNA substrates. J. Biol. Chem., 261, 12128-12133.
-
(1986)
J. Biol. Chem.
, vol.261
, pp. 12128-12133
-
-
Nardone, G.1
George, J.2
Chirikjian, J.G.3
-
153
-
-
0032562139
-
Kinetic characterization of linear diffusion of the restriction endonuclease EcoRV on DNA
-
Jeltsch, A., Pingoud, A. (1998) Kinetic characterization of linear diffusion of the restriction endonuclease EcoRV on DNA. Biochemistry, 37, 2160-2169.
-
(1998)
Biochemistry
, vol.37
, pp. 2160-2169
-
-
Jeltsch, A.1
Pingoud, A.2
-
154
-
-
0028782732
-
Pausing of the restriction endonuclease EcoRI during linear diffusion on DNA
-
Jeltsch, A., Alves, J., Wolfes, H., Maass, G., Pingoud, A. (1994) Pausing of the restriction endonuclease EcoRI during linear diffusion on DNA. Biochemistry, 33, 10215-10219.
-
(1994)
Biochemistry
, vol.33
, pp. 10215-10219
-
-
Jeltsch, A.1
Alves, J.2
Wolfes, H.3
Maass, G.4
Pingoud, A.5
-
155
-
-
0030067414
-
Accurate scanning of the BssHII endonuclease in search for its DNA cleavage site
-
Berkhout, B., van Wamel, J. (1996) Accurate scanning of the BssHII endonuclease in search for its DNA cleavage site. J. Biol. Chem., 271, 1837-1840.
-
(1996)
J. Biol. Chem.
, vol.271
, pp. 1837-1840
-
-
Berkhout, B.1
Van Wamel, J.2
-
156
-
-
0029790522
-
Linear diffusion of the restriction endonuclease EcoRV on DNA is essential for the in vivo function of the enzyme
-
Jeltsch, A., Wenz, C., Stahl, F., Pingoud, A. (1996) Linear diffusion of the restriction endonuclease EcoRV on DNA is essential for the in vivo function of the enzyme. EMBO J., 15, 5104-5111.
-
(1996)
EMBO J.
, vol.15
, pp. 5104-5111
-
-
Jeltsch, A.1
Wenz, C.2
Stahl, F.3
Pingoud, A.4
-
157
-
-
0034877122
-
Hopping, jumping and looping by restriction enzymes
-
Halford, S.E. (2001) Hopping, jumping and looping by restriction enzymes. Biochem. Soc. Trans., 29, 363-374.
-
(2001)
Biochem. Soc. Trans.
, vol.29
, pp. 363-374
-
-
Halford, S.E.1
-
158
-
-
0034387984
-
One- and three-dimensional pathways for proteins to reach specific DNA sites
-
Stanford, N.P., Szczelkun, M.D., Marko, J.F., Halford, S.E. (2000) One- and three-dimensional pathways for proteins to reach specific DNA sites. EMBO J., 19, 6546-6557.
-
(2000)
EMBO J.
, vol.19
, pp. 6546-6557
-
-
Stanford, N.P.1
Szczelkun, M.D.2
Marko, J.F.3
Halford, S.E.4
-
159
-
-
0036656143
-
How to get from A to B: Strategies for analysing protein motion on DNA
-
Halford, S.E., Szczelkun, M.D. (2002) How to get from A to B: strategies for analysing protein motion on DNA. Eur. Biophys. J., 31, 257-267.
-
(2002)
Eur. Biophys. J.
, vol.31
, pp. 257-267
-
-
Halford, S.E.1
Szczelkun, M.D.2
-
160
-
-
67649394764
-
Tracking of single quantum dot labeled EcoRV sliding along DNA manipulated by double optical tweezers
-
Biebricher, A., Wende, W., Escude, C., Pingoud, A., Desbiolles, P. (2009) Tracking of single quantum dot labeled EcoRV sliding along DNA manipulated by double optical tweezers. Biophys. J., 96, L50-L52.
-
(2009)
Biophys. J.
, vol.96
-
-
Biebricher, A.1
Wende, W.2
Escude, C.3
Pingoud, A.4
Desbiolles, P.5
-
161
-
-
47249153641
-
Sliding and jumping of single EcoRV restriction enzymes on non-cognate DNA
-
Bonnet, I., Biebricher, A., Porte, P.L., Loverdo, C., Benichou, O., Voituriez, R., Escude, C., Wende, W., Pingoud, A., Desbiolles, P. (2008) Sliding and jumping of single EcoRV restriction enzymes on non-cognate DNA. Nucleic Acids Res., 36, 4118-4127.
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 4118-4127
-
-
Bonnet, I.1
Biebricher, A.2
Porte, P.L.3
Loverdo, C.4
Benichou, O.5
Voituriez, R.6
Escude, C.7
Wende, W.8
Pingoud, A.9
Desbiolles, P.10
-
162
-
-
27644460480
-
Measurement of the contributions of 1D and 3D pathways to the translocation of a protein along DNA
-
Gowers, D.M., Wilson, G.G., Halford, S.E. (2005) Measurement of the contributions of 1D and 3D pathways to the translocation of a protein along DNA. Proc. Natl. Acad. Sci. U.S.A., 102, 15883-15888.
-
(2005)
Proc. Natl. Acad. Sci. U.S.A.
, vol.102
, pp. 15883-15888
-
-
Gowers, D.M.1
Wilson, G.G.2
Halford, S.E.3
-
163
-
-
0019522683
-
Sequence analysis of the DNA encoding the EcoRI endonuclease and methylase
-
Greene, P.J., Gupta, M., Boyer, H.W., Brown, W.E., Rosenberg, J.M. (1981) Sequence analysis of the DNA encoding the EcoRI endonuclease and methylase. J. Biol. Chem., 256, 2143-2153.
-
(1981)
J. Biol. Chem.
, vol.256
, pp. 2143-2153
-
-
Greene, P.J.1
Gupta, M.2
Boyer, H.W.3
Brown, W.E.4
Rosenberg, J.M.5
-
164
-
-
0019482592
-
DNA sequences of structural genes for EcoRI DNA restriction and modified enzymes
-
Newman, A.K., Rubin, R.A., Kim, S.H., Modrich, P. (1981) DNA sequences of structural genes for EcoRI DNA restriction and modified enzymes. J. Biol. Chem., 256, 2131-2139.
-
(1981)
J. Biol. Chem.
, vol.256
, pp. 2131-2139
-
-
Newman, A.K.1
Rubin, R.A.2
Kim, S.H.3
Modrich, P.4
-
165
-
-
0018692361
-
Molecular cloning of the DNA ligase gene from bacteriophage T4. II. Amplification and preparation of the gene product
-
Murray, N.E., Bruce, S.A., Murray, K. (1979) Molecular cloning of the DNA ligase gene from bacteriophage T4. II. Amplification and preparation of the gene product. J. Mol. Biol., 132, 493-505.
-
(1979)
J. Mol. Biol.
, vol.132
, pp. 493-505
-
-
Murray, N.E.1
Bruce, S.A.2
Murray, K.3
-
166
-
-
0018692360
-
Molecular cloning of the DNA ligase gene from bacteriophage T4. I. Characterisation of the recombinants
-
Wilson, G.G., Murray, N.E. (1979) Molecular cloning of the DNA ligase gene from bacteriophage T4. I. Characterisation of the recombinants. J. Mol. Biol., 132, 471-491.
-
(1979)
J. Mol. Biol.
, vol.132
, pp. 471-491
-
-
Wilson, G.G.1
Murray, N.E.2
-
167
-
-
0017618302
-
Five hundredfold overproduction of DNA ligase after induction of a hybrid lambda lysogen constructed in vitro
-
Panasenko, S.M., Cameron, J.R., Davis, R.W., Lehman, I.R. (1977) Five hundredfold overproduction of DNA ligase after induction of a hybrid lambda lysogen constructed in vitro. Science, 196, 188-189.
-
(1977)
Science
, vol.196
, pp. 188-189
-
-
Panasenko, S.M.1
Cameron, J.R.2
Davis, R.W.3
Lehman, I.R.4
-
168
-
-
0017197157
-
Isolation and characterization of a lambda specialized transducing phage for the Escherichia coli DNA ligase gene
-
Gottesman, M.M. (1976) Isolation and characterization of a lambda specialized transducing phage for the Escherichia coli DNA ligase gene. Virology, 72, 33-44.
-
(1976)
Virology
, vol.72
, pp. 33-44
-
-
Gottesman, M.M.1
-
169
-
-
0023434015
-
Cloning and expression of T4 DNA polymerase
-
Lin, T.C., Rush, J., Spicer, E.K., Konigsberg, W.H. (1987) Cloning and expression of T4 DNA polymerase. Proc. Natl. Acad. Sci. U.S.A., 84, 7000-7004.
-
(1987)
Proc. Natl. Acad. Sci. U.S.A.
, vol.84
, pp. 7000-7004
-
-
Lin, T.C.1
Rush, J.2
Spicer, E.K.3
Konigsberg, W.H.4
-
170
-
-
0018330584
-
Characterization of lambda polA transducing phages; Effective expression of the E coli polA gene
-
Murray, N.E., Kelley, W.S. (1979) Characterization of lambda polA transducing phages; effective expression of the E. coli polA gene. Mol. Gen. Genet., 175, 77-87.
-
(1979)
Mol. Gen. Genet.
, vol.175
, pp. 77-87
-
-
Murray, N.E.1
Kelley, W.S.2
-
171
-
-
0026338873
-
Restriction and modification systems
-
Wilson, G.G., Murray, N.E. (1991) Restriction and modification systems. Annu. Rev. Genet., 25, 585-627.
-
(1991)
Annu. Rev. Genet.
, vol.25
, pp. 585-627
-
-
Wilson, G.G.1
Murray, N.E.2
-
172
-
-
0024247379
-
Cloned restriction-modification systems-a review
-
Wilson, G.G. (1988) Cloned restriction-modification systems-a review. Gene, 74, 281-289.
-
(1988)
Gene
, vol.74
, pp. 281-289
-
-
Wilson, G.G.1
-
173
-
-
0020507209
-
The nucleotide sequence of the HhaII restriction and modification genes from Haemophilus haemolyticus
-
Schoner, B., Kelly, S., Smith, H.O. (1983) The nucleotide sequence of the HhaII restriction and modification genes from Haemophilus haemolyticus. Gene, 24, 227-236.
-
(1983)
Gene
, vol.24
, pp. 227-236
-
-
Schoner, B.1
Kelly, S.2
Smith, H.O.3
-
174
-
-
0018186813
-
Cloning of restriction and modification genes in E coli: The HhaII system from Haemophilus haemolyticus
-
Mann, M.B., Rao, R.N., Smith, H.O. (1978) Cloning of restriction and modification genes in E. coli: the HhaII system from Haemophilus haemolyticus. Gene, 3, 97-112.
-
(1978)
Gene
, vol.3
, pp. 97-112
-
-
Mann, M.B.1
Rao, R.N.2
Smith, H.O.3
-
175
-
-
0019889719
-
Overproduction of the EcoRII endonuclease and methylase by Escherichia coli strains carrying recombinant plasmids constructed in vitro
-
Kosykh, V.G., Solonin, A.S., Buryanov, Y.I., Bayev, A.A. (1981) Overproduction of the EcoRII endonuclease and methylase by Escherichia coli strains carrying recombinant plasmids constructed in vitro. Biochim. Biophys. Acta, 655, 102-106.
-
(1981)
Biochim. Biophys. Acta
, vol.655
, pp. 102-106
-
-
Kosykh, V.G.1
Solonin, A.S.2
Buryanov, Y.I.3
Bayev, A.A.4
-
176
-
-
0018972399
-
Molecular cloning of EcoRII endonuclease and methylase genes
-
Kosykh, V.G., Buryanov, Y.I., Bayev, A.A. (1980) Molecular cloning of EcoRII endonuclease and methylase genes. Mol. Gen. Genet., 178, 717-718.
-
(1980)
Mol. Gen. Genet.
, vol.178
, pp. 717-718
-
-
Kosykh, V.G.1
Buryanov, Y.I.2
Bayev, A.A.3
-
177
-
-
70349340337
-
Genetic and molecular analysis of the EcoRI restriction and modification system
-
Greene, P.J., Boyer, H.W. (1981) Genetic and molecular analysis of the EcoRI restriction and modification system. Fed. Proc., 40, 293.
-
(1981)
Fed. Proc.
, vol.40
, pp. 293
-
-
Greene, P.J.1
Boyer, H.W.2
-
178
-
-
0345499207
-
Cloning and expression of the PstI restriction-modification system in Escherichia coli
-
Walder, R.Y., Hartley, J.L., Donelson, J.E., Walder, J.A. (1981) Cloning and expression of the PstI restriction-modification system in Escherichia coli. Proc. Natl. Acad. Sci. U.S.A., 78, 1503-1507.
-
(1981)
Proc. Natl. Acad. Sci. U.S.A.
, vol.78
, pp. 1503-1507
-
-
Walder, R.Y.1
Hartley, J.L.2
Donelson, J.E.3
Walder, J.A.4
-
179
-
-
0021770635
-
The organization and complete nucleotide sequence of the PstI restriction-modification system
-
Walder, R.Y., Walder, J.A., Donelson, J.E. (1984) The organization and complete nucleotide sequence of the PstI restriction-modification system. J. Biol. Chem., 259, 8015-8026.
-
(1984)
J. Biol. Chem.
, vol.259
, pp. 8015-8026
-
-
Walder, R.Y.1
Walder, J.A.2
Donelson, J.E.3
-
180
-
-
0022422393
-
Nucleotide sequence of the PaeR7 restriction/modification system and partial characterization of its protein products
-
Theriault, G., Roy, P.H., Howard, K.A., Benner, J.S., Brooks, J.S., Waters, A.F., Gingeras, T.R. (1985) Nucleotide sequence of the PaeR7 restriction/modification system and partial characterization of its protein products. Nucleic Acids Res., 13, 8441-8461.
-
(1985)
Nucleic Acids Res.
, vol.13
, pp. 8441-8461
-
-
Theriault, G.1
Roy, P.H.2
Howard, K.A.3
Benner, J.S.4
Brooks, J.S.5
Waters, A.F.6
Gingeras, T.R.7
-
181
-
-
0020688831
-
Cloned restriction/modification system from Pseudomonas aeruginosa
-
Gingeras, T.R., Brooks, J.E. (1983) Cloned restriction/modification system from Pseudomonas aeruginosa. Proc. Natl. Acad. Sci. U.S.A., 80, 402-406.
-
(1983)
Proc. Natl. Acad. Sci. U.S.A.
, vol.80
, pp. 402-406
-
-
Gingeras, T.R.1
Brooks, J.E.2
-
182
-
-
0020361706
-
Cloning of Pseudomonas plasmid pMG7 and its restriction-modification system in Escherichia coli
-
Theriault, G., Roy, P.H. (1982) Cloning of Pseudomonas plasmid pMG7 and its restriction-modification system in Escherichia coli. Gene, 19, 355-359.
-
(1982)
Gene
, vol.19
, pp. 355-359
-
-
Theriault, G.1
Roy, P.H.2
-
183
-
-
0022423408
-
Overproduction of the EcoRV endonuclease and methylase
-
Bougueleret, L., Tenchini, M.L., Botterman, J., Zabeau, M. (1985) Overproduction of the EcoRV endonuclease and methylase. Nucleic Acids Res., 13, 3823-3839.
-
(1985)
Nucleic Acids Res.
, vol.13
, pp. 3823-3839
-
-
Bougueleret, L.1
Tenchini, M.L.2
Botterman, J.3
Zabeau, M.4
-
184
-
-
0021770483
-
Characterization of the genes coding for the EcoRV restriction and modification system of Escherichia coli
-
Bougueleret, L., Schwarzstein, M., Tsugita, A., Zabeau, M. (1984) Characterization of the genes coding for the EcoRV restriction and modification system of Escherichia coli. Nucleic Acids Res., 12, 3659-3677.
-
(1984)
Nucleic Acids Res.
, vol.12
, pp. 3659-3677
-
-
Bougueleret, L.1
Schwarzstein, M.2
Tsugita, A.3
Zabeau, M.4
-
185
-
-
0022376069
-
Cloning of a restriction-modification system from Proteus vulgaris and its use in analyzing a methylase-sensitive phenotype in Escherichia coli
-
Blumenthal, R.M., Gregory, S.A., Cooperider, J.S. (1985) Cloning of a restriction-modification system from Proteus vulgaris and its use in analyzing a methylase-sensitive phenotype in Escherichia coli. J. Bacteriol., 164, 501-509.
-
(1985)
J. Bacteriol.
, vol.164
, pp. 501-509
-
-
Blumenthal, R.M.1
Gregory, S.A.2
Cooperider, J.S.3
-
186
-
-
0022432413
-
Nucleotide sequence of the BsuRI restriction-modification system
-
Kiss, A., Posfai, G., Keller, C.C., Venetianer, P., Roberts, R.J. (1985) Nucleotide sequence of the BsuRI restriction-modification system. Nucleic Acids Res., 13, 6403-6420.
-
(1985)
Nucleic Acids Res.
, vol.13
, pp. 6403-6420
-
-
Kiss, A.1
Posfai, G.2
Keller, C.C.3
Venetianer, P.4
Roberts, R.J.5
-
187
-
-
0017114950
-
The construction in vitro of transducing derivatives of phage lambda
-
Borck, K., Beggs, J.D., Brammar, W.J., Hopkins, A.S., Murray, N.E. (1976) The construction in vitro of transducing derivatives of phage lambda. Mol. Gen. Genet., 146, 199-207.
-
(1976)
Mol. Gen. Genet.
, vol.146
, pp. 199-207
-
-
Borck, K.1
Beggs, J.D.2
Brammar, W.J.3
Hopkins, A.S.4
Murray, N.E.5
-
188
-
-
0018966254
-
Cloning the modification methylase gene of Bacillus sphaericus R in Escherichia coli
-
Szomolanyi, I., Kiss, A., Venetianer, P. (1980) Cloning the modification methylase gene of Bacillus sphaericus R in Escherichia coli. Gene, 10, 219-225.
-
(1980)
Gene
, vol.10
, pp. 219-225
-
-
Szomolanyi, I.1
Kiss, A.2
Venetianer, P.3
-
189
-
-
0024265139
-
Cloning Type II restriction and modification genes
-
Lunnen, K.D., Barsomian, J.M., Camp, R.R., Card, C.O., Chen, S.Z., Croft, R., Looney, M.C., Meda, M.M., Moran, L.S., Nwankwo, D.O. et al. (1988) Cloning Type II restriction and modification genes. Gene, 74, 25-32.
-
(1988)
Gene
, vol.74
, pp. 25-32
-
-
Lunnen, K.D.1
Barsomian, J.M.2
Camp, R.R.3
Card, C.O.4
Chen, S.Z.5
Croft, R.6
Looney, M.C.7
Meda, M.M.8
Moran, L.S.9
Nwankwo, D.O.10
-
190
-
-
0023056236
-
Cloning the DdeI restriction-modification system using a two-step method
-
Howard, K.A., Card, C., Benner, J.S., Callahan, H.L., Maunus, R., Silber, K., Wilson, G., Brooks, J.E. (1986) Cloning the DdeI restriction-modification system using a two-step method. Nucleic Acids Res., 14, 7939-7951.
-
(1986)
Nucleic Acids Res.
, vol.14
, pp. 7939-7951
-
-
Howard, K.A.1
Card, C.2
Benner, J.S.3
Callahan, H.L.4
Maunus, R.5
Silber, K.6
Wilson, G.7
Brooks, J.E.8
-
191
-
-
0024551474
-
Cloning the BamHI restriction modification system
-
Brooks, J.E., Benner, J.S., Heiter, D.F., Silber, K.R., Sznyter, L.A., Jager-Quinton, T., Moran, L.S., Slatko, B.E., Wilson, G.G., Nwankwo, D.O. (1989) Cloning the BamHI restriction modification system. Nucleic Acids Res., 17, 979-997.
-
(1989)
Nucleic Acids Res.
, vol.17
, pp. 979-997
-
-
Brooks, J.E.1
Benner, J.S.2
Heiter, D.F.3
Silber, K.R.4
Sznyter, L.A.5
Jager-Quinton, T.6
Moran, L.S.7
Slatko, B.E.8
Wilson, G.G.9
Nwankwo, D.O.10
-
192
-
-
0030615227
-
Cloning and characterization of the BglII restriction-modification system reveals a possible evolutionary footprint
-
Anton, B.P., Heiter, D.F., Benner, J.S., Hess, E.J., Greenough, L., Moran, L.S., Slatko, B.E., Brooks, J.E. (1997) Cloning and characterization of the BglII restriction-modification system reveals a possible evolutionary footprint. Gene, 187, 19-27.
-
(1997)
Gene
, vol.187
, pp. 19-27
-
-
Anton, B.P.1
Heiter, D.F.2
Benner, J.S.3
Hess, E.J.4
Greenough, L.5
Moran, L.S.6
Slatko, B.E.7
Brooks, J.E.8
-
193
-
-
84879726912
-
A bistable hysteretic switch in an activator-repressor regulated restriction-modification system
-
Williams, K., Savageau, M.A., Blumenthal, R.M. (2013) A bistable hysteretic switch in an activator-repressor regulated restriction-modification system. Nucleic Acids Res., 41, 6045-6057.
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. 6045-6057
-
-
Williams, K.1
Savageau, M.A.2
Blumenthal, R.M.3
-
194
-
-
67249085515
-
Transcription regulation of restriction-modification system Esp1396I
-
Bogdanova, E., Zakharova, M., Streeter, S., Taylor, J., Heyduk, T., Kneale, G., Severinov, K. (2009) Transcription regulation of restriction-modification system Esp1396I. Nucleic Acids Res., 37, 3354-3366.
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 3354-3366
-
-
Bogdanova, E.1
Zakharova, M.2
Streeter, S.3
Taylor, J.4
Heyduk, T.5
Kneale, G.6
Severinov, K.7
-
195
-
-
41149103531
-
Transcription regulation of the type II restriction-modification system AhdI
-
Bogdanova, E., Djordjevic, M., Papapanagiotou, I., Heyduk, T., Kneale, G., Severinov, K. (2008) Transcription regulation of the type II restriction-modification system AhdI. Nucleic Acids Res., 36, 1429-1442.
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 1429-1442
-
-
Bogdanova, E.1
Djordjevic, M.2
Papapanagiotou, I.3
Heyduk, T.4
Kneale, G.5
Severinov, K.6
-
196
-
-
11844250013
-
Nature of the promoter activated by C.PvuII, an unusual regulatory protein conserved among restriction-modification systems
-
Knowle, D., Lintner, R.E., Touma, Y.M., Blumenthal, R.M. (2005) Nature of the promoter activated by C.PvuII, an unusual regulatory protein conserved among restriction-modification systems. J. Bacteriol., 187, 488-497.
-
(2005)
J. Bacteriol.
, vol.187
, pp. 488-497
-
-
Knowle, D.1
Lintner, R.E.2
Touma, Y.M.3
Blumenthal, R.M.4
-
197
-
-
0022994853
-
E coli can restrict methylated DNA and may skew genomic libraries
-
Blumenthal, R.M. (1986) E. coli can restrict methylated DNA and may skew genomic libraries. Trends Biotechnol., 4, 302-305.
-
(1986)
Trends Biotechnol.
, vol.4
, pp. 302-305
-
-
Blumenthal, R.M.1
-
198
-
-
0022872027
-
Escherichia coli K-12 restricts DNA containing 5-methylcytosine
-
Raleigh, E.A., Wilson, G. (1986) Escherichia coli K-12 restricts DNA containing 5-methylcytosine. Proc. Natl. Acad. Sci. U.S.A., 83, 9070-9074.
-
(1986)
Proc. Natl. Acad. Sci. U.S.A.
, vol.83
, pp. 9070-9074
-
-
Raleigh, E.A.1
Wilson, G.2
-
199
-
-
0022881293
-
Cytosine-specific DNA modification interferes with plasmid establishment in Escherichia coli K12: Involvement of rgl B
-
Noyer-Weidner, M., Diaz, R., Reiners, L. (1986) Cytosine-specific DNA modification interferes with plasmid establishment in Escherichia coli K12: involvement of rgl B. Mol. Gen. Genet., 205, 469-475.
-
(1986)
Mol. Gen. Genet.
, vol.205
, pp. 469-475
-
-
Noyer-Weidner, M.1
Diaz, R.2
Reiners, L.3
-
200
-
-
0014917010
-
DNA-glucosylation in T-even phage: Genetic determination and role in phage-host interaction
-
Revel, H.R., Luria, S.E. (1970) DNA-glucosylation in T-even phage: genetic determination and role in phage-host interaction. Annu. Rev. Genet., 4, 177-192.
-
(1970)
Annu. Rev. Genet.
, vol.4
, pp. 177-192
-
-
Revel, H.R.1
Luria, S.E.2
-
201
-
-
0024296268
-
McrA and McrB restriction phenotypes of some E coli strains and implications for gene cloning
-
Raleigh, E.A., Murray, N.E., Revel, H., Blumenthal, R.M., Westaway, D., Reith, A.D., Rigby, P.W.J., Elhai, J., Hanahan, D. (1988) McrA and McrB restriction phenotypes of some E. coli strains and implications for gene cloning. Nucleic Acids Res., 15, 1563-1575.
-
(1988)
Nucleic Acids Res.
, vol.15
, pp. 1563-1575
-
-
Raleigh, E.A.1
Murray, N.E.2
Revel, H.3
Blumenthal, R.M.4
Westaway, D.5
Reith, A.D.6
Rigby, P.W.J.7
Elhai, J.8
Hanahan, D.9
-
202
-
-
0033822258
-
Atomic model of the 5-methylcytosine-specific restriction enzyme McrA reveals an atypical zinc finger and structural similarity to beta beta alpha-Me endonucleases
-
Bujnicki, J.M., Radlinska, M., Rychlewski, L. (2000) Atomic model of the 5-methylcytosine-specific restriction enzyme McrA reveals an atypical zinc finger and structural similarity to beta beta alpha-Me endonucleases. Mol. Microbiol., 37, 1280-1281.
-
(2000)
Mol. Microbiol.
, vol.37
, pp. 1280-1281
-
-
Bujnicki, J.M.1
Radlinska, M.2
Rychlewski, L.3
-
203
-
-
51249170212
-
Molecular cloning and sequencing of mcrA locus and identification of McrA protein in Escherichia coli
-
Ramalingam, R., Prasad, R., Shivapriya, R., Dharmalingam, K. (1992) Molecular cloning and sequencing of mcrA locus and identification of McrA protein in Escherichia coli. J. Biosci., 17, 217-232.
-
(1992)
J. Biosci.
, vol.17
, pp. 217-232
-
-
Ramalingam, R.1
Prasad, R.2
Shivapriya, R.3
Dharmalingam, K.4
-
204
-
-
0025837124
-
Cloning and structural characterization of the mcrA locus of Escherichia coli
-
Hiom, K., Sedgwick, S.G. (1991) Cloning and structural characterization of the mcrA locus of Escherichia coli. J. Bacteriol., 173, 7368-7373.
-
(1991)
J. Bacteriol.
, vol.173
, pp. 7368-7373
-
-
Hiom, K.1
Sedgwick, S.G.2
-
205
-
-
0035906281
-
Identification of a PD-(D/E)XK-like domain with a novel configuration of the endonuclease active site in the methyl-directed restriction enzyme Mrr and its homologs
-
Bujnicki, J.M., Rychlewski, L. (2001) Identification of a PD-(D/E)XK-like domain with a novel configuration of the endonuclease active site in the methyl-directed restriction enzyme Mrr and its homologs. Gene, 267, 183-191.
-
(2001)
Gene
, vol.267
, pp. 183-191
-
-
Bujnicki, J.M.1
Rychlewski, L.2
-
206
-
-
0026323401
-
Characterization and expression of the Escherichia coli Mrr restriction system
-
Waite-Rees, P.A., Keating, C.J., Moran, L.S., Slatko, B.E., Hornstra, L.J., Benner, J.S. (1991) Characterization and expression of the Escherichia coli Mrr restriction system. J. Bacteriol., 173, 5207-5219.
-
(1991)
J. Bacteriol.
, vol.173
, pp. 5207-5219
-
-
Waite-Rees, P.A.1
Keating, C.J.2
Moran, L.S.3
Slatko, B.E.4
Hornstra, L.J.5
Benner, J.S.6
-
207
-
-
0023274383
-
Site-specific methylases induce the SOS DNA repair response in Escherichia coli
-
Heitman, J., Model, P. (1987) Site-specific methylases induce the SOS DNA repair response in Escherichia coli. J. Bacteriol., 169, 3243-3250.
-
(1987)
J. Bacteriol.
, vol.169
, pp. 3243-3250
-
-
Heitman, J.1
Model, P.2
-
208
-
-
77956500617
-
A unique family of Mrr-like modification-dependent restriction endonucleases
-
Zheng, Y., Cohen-Karni, D., Xu, D., Chin, H.G., Wilson, G., Pradhan, S., Roberts, R.J. (2010) A unique family of Mrr-like modification-dependent restriction endonucleases. Nucleic Acids Res., 38, 5527-5534.
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 5527-5534
-
-
Zheng, Y.1
Cohen-Karni, D.2
Xu, D.3
Chin, H.G.4
Wilson, G.5
Pradhan, S.6
Roberts, R.J.7
-
209
-
-
84876532947
-
Characterization of the 5-hydroxymethylcytosine-specific DNA restriction endonucleases
-
Borgaro, J.G., Zhu, Z. (2013) Characterization of the 5-hydroxymethylcytosine-specific DNA restriction endonucleases. Nucleic Acids Res., 41, 4198-4206.
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. 4198-4206
-
-
Borgaro, J.G.1
Zhu, Z.2
-
210
-
-
82255183196
-
Comparative characterization of the PvuRts1I family of restriction enzymes and their application in mapping genomic 5-hydroxymethylcytosine
-
Wang, H., Guan, S., Quimby, A., Cohen-Karni, D., Pradhan, S., Wilson, G., Roberts, R.J., Zhu, Z., Zheng, Y. (2011) Comparative characterization of the PvuRts1I family of restriction enzymes and their application in mapping genomic 5-hydroxymethylcytosine. Nucleic Acids Res., 39, 9294-9305.
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. 9294-9305
-
-
Wang, H.1
Guan, S.2
Quimby, A.3
Cohen-Karni, D.4
Pradhan, S.5
Wilson, G.6
Roberts, R.J.7
Zhu, Z.8
Zheng, Y.9
-
211
-
-
79960273984
-
Characterization of PvuRts1I endonuclease as a tool to investigate genomic 5-hydroxymethylcytosine
-
Szwagierczak, A., Brachmann, A., Schmidt, C.S., Bultmann, S., Leonhardt, H., Spada, F. (2011) Characterization of PvuRts1I endonuclease as a tool to investigate genomic 5-hydroxymethylcytosine. Nucleic Acids Res., 39, 5149-5156.
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. 5149-5156
-
-
Szwagierczak, A.1
Brachmann, A.2
Schmidt, C.S.3
Bultmann, S.4
Leonhardt, H.5
Spada, F.6
-
212
-
-
0028040618
-
Molecular cloning and expression of a novel hydroxymethylcytosine- specific restriction enzyme (PvuRts1I) modulated by glucosylation of DNA
-
Janosi, L., Yonemitsu, H., Hong, H., Kaji, A. (1994) Molecular cloning and expression of a novel hydroxymethylcytosine-specific restriction enzyme (PvuRts1I) modulated by glucosylation of DNA. J. Mol. Biol., 242, 45-61.
-
(1994)
J. Mol. Biol.
, vol.242
, pp. 45-61
-
-
Janosi, L.1
Yonemitsu, H.2
Hong, H.3
Kaji, A.4
-
213
-
-
33846591325
-
A Type IV modification dependent restriction nuclease that targets glucosylated hydroxymethyl cytosine modified DNAs
-
Bair, C.L., Black, L.W. (2007) A Type IV modification dependent restriction nuclease that targets glucosylated hydroxymethyl cytosine modified DNAs. J. Mol. Biol., 366, 768-778.
-
(2007)
J. Mol. Biol.
, vol.366
, pp. 768-778
-
-
Bair, C.L.1
Black, L.W.2
-
214
-
-
39849085506
-
Substrate specificity of new methyl-directed DNA endonuclease GlaI
-
Tarasova, G.V., Nayakshina, T.N., Degtyarev, S.K. (2008) Substrate specificity of new methyl-directed DNA endonuclease GlaI. BMC Mol. Biol., 9, 7.
-
(2008)
BMC Mol. Biol.
, vol.9
, pp. 7
-
-
Tarasova, G.V.1
Nayakshina, T.N.2
Degtyarev, S.K.3
-
215
-
-
0021111539
-
Cloning of the MspI modification enzyme
-
Walder, R.Y., Langtimm, C.J., Catterjee, R., Walder, J.A. (1983) Cloning of the MspI modification enzyme. J. Biol. Chem., 258, 1235-1241.
-
(1983)
J. Biol. Chem.
, vol.258
, pp. 1235-1241
-
-
Walder, R.Y.1
Langtimm, C.J.2
Catterjee, R.3
Walder, J.A.4
-
216
-
-
0020530944
-
Molecular cloning and expression in Escherichia coli of two modification methylase genes of Bacillus subtilis
-
Kiss, A., Baldauf, F. (1983) Molecular cloning and expression in Escherichia coli of two modification methylase genes of Bacillus subtilis. Gene, 21, 111-119.
-
(1983)
Gene
, vol.21
, pp. 111-119
-
-
Kiss, A.1
Baldauf, F.2
-
217
-
-
0020456055
-
Cloning of the modification methylase gene of Bacillus centrosporus in Escherichia coli
-
Janulaitis, A., Povilionis, P., Sasnauskas, K. (1982) Cloning of the modification methylase gene of Bacillus centrosporus in Escherichia coli. Gene, 20, 197-204.
-
(1982)
Gene
, vol.20
, pp. 197-204
-
-
Janulaitis, A.1
Povilionis, P.2
Sasnauskas, K.3
-
218
-
-
0019733038
-
-
Chirikjian J.G. (ed) Elsevier North, Holland
-
Mann, M.B. (1981) In: Chirikjian, J.G. (ed). Restriction Endonucleases, Vol. 1. Elsevier North, Holland, pp. 229-237.
-
(1981)
Restriction Endonucleases
, vol.1
, pp. 229-237
-
-
Mann, M.B.1
-
219
-
-
84871222928
-
The methylomes of six bacteria
-
Murray, I.A., Clark, T.A., Morgan, R.D., Boitano, M., Anton, B.P., Luong, K., Fomenkov, A., Turner, S.W., Korlach, J., Roberts, R.J. (2012) The methylomes of six bacteria. Nucleic Acids Res., 40, 11450-11462.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 11450-11462
-
-
Murray, I.A.1
Clark, T.A.2
Morgan, R.D.3
Boitano, M.4
Anton, B.P.5
Luong, K.6
Fomenkov, A.7
Turner, S.W.8
Korlach, J.9
Roberts, R.J.10
-
220
-
-
0025761512
-
Restriction enzymes and their isoschizomers
-
Roberts, R.J., Macelis, D. (1991) Restriction enzymes and their isoschizomers. Nucleic Acids Res., 19, 2077-2109.
-
(1991)
Nucleic Acids Res.
, vol.19
, pp. 2077-2109
-
-
Roberts, R.J.1
Macelis, D.2
-
221
-
-
84904015273
-
RsrI and EcoRI are two different restriction endonucleases that recognize the same DNA sequence
-
Aiken, C., Milarski-Brown, K., Gumport, R.I. (1986) RsrI and EcoRI are two different restriction endonucleases that recognize the same DNA sequence. Fed. Proc., 45, 1914.
-
(1986)
Fed. Proc.
, vol.45
, pp. 1914
-
-
Aiken, C.1
Milarski-Brown, K.2
Gumport, R.I.3
-
222
-
-
0024851310
-
Comparison of the nucleotide and amino acid sequences of the RsrI and EcoRI restriction endonucleases
-
Stephenson, F.H., Ballard, B.T., Boyer, H.W., Rosenberg, J.M., Greene, P.J. (1989) Comparison of the nucleotide and amino acid sequences of the RsrI and EcoRI restriction endonucleases. Gene, 85, 1-13.
-
(1989)
Gene
, vol.85
, pp. 1-13
-
-
Stephenson, F.H.1
Ballard, B.T.2
Boyer, H.W.3
Rosenberg, J.M.4
Greene, P.J.5
-
223
-
-
34247582888
-
An EcoRI-RsrI chimeric restriction endonuclease retains parental sequence specificity
-
Chuluunbaatar, T., Ivanenko-Johnston, T., Fuxreiter, M., Meleshko, R., Rasko, T., Simon, I., Heitman, J., Kiss, A. (2007) An EcoRI-RsrI chimeric restriction endonuclease retains parental sequence specificity. Biochim. Biophys. Acta, 1774, 583-594.
-
(2007)
Biochim. Biophys. Acta
, vol.1774
, pp. 583-594
-
-
Chuluunbaatar, T.1
Ivanenko-Johnston, T.2
Fuxreiter, M.3
Meleshko, R.4
Rasko, T.5
Simon, I.6
Heitman, J.7
Kiss, A.8
-
224
-
-
0026794093
-
Characterization of the archaeal, plasmid-encoded type II restriction-modification system MthTI from Methanobacterium thermoformicicum THF: Homology to the bacterial NgoPII system from Neisseria gonorrhoeae
-
Nolling, J., de Vos, W.M. (1992) Characterization of the archaeal, plasmid-encoded type II restriction-modification system MthTI from Methanobacterium thermoformicicum THF: homology to the bacterial NgoPII system from Neisseria gonorrhoeae. J. Bacteriol., 174, 5719-5726.
-
(1992)
J. Bacteriol.
, vol.174
, pp. 5719-5726
-
-
Nolling, J.1
De Vos, W.M.2
-
225
-
-
0027008370
-
Structure and evolution of the XcyI restriction-modification system
-
Withers, B.E., Ambroso, L.A., Dunbar, J.C. (1992) Structure and evolution of the XcyI restriction-modification system. Nucleic Acids Res., 20, 6267-6273.
-
(1992)
Nucleic Acids Res.
, vol.20
, pp. 6267-6273
-
-
Withers, B.E.1
Ambroso, L.A.2
Dunbar, J.C.3
-
226
-
-
0028998049
-
Evidence for an evolutionary relationship among type-II restriction endonucleases
-
Jeltsch, A., Kroger, M., Pingoud, A. (1995) Evidence for an evolutionary relationship among type-II restriction endonucleases. Gene, 160, 7-16.
-
(1995)
Gene
, vol.160
, pp. 7-16
-
-
Jeltsch, A.1
Kroger, M.2
Pingoud, A.3
-
227
-
-
0029940857
-
Horizontal gene transfer contributes to the wide distribution and evolution of type II restriction-modification systems
-
Jeltsch, A., Pingoud, A. (1996) Horizontal gene transfer contributes to the wide distribution and evolution of type II restriction-modification systems. J. Mol. Evol., 42, 91-96.
-
(1996)
J. Mol. Evol.
, vol.42
, pp. 91-96
-
-
Jeltsch, A.1
Pingoud, A.2
-
228
-
-
84904015264
-
Cell death programmed by selfish genes-or, why are there restriction enzymes?
-
Naito, T., Kobayashi, I. (1995) Cell death programmed by selfish genes-or, why are there restriction enzymes? Jikken Igaku, 13, 1444-1447.
-
(1995)
Jikken Igaku
, vol.13
, pp. 1444-1447
-
-
Naito, T.1
Kobayashi, I.2
-
229
-
-
0034660061
-
Crystal structure of NaeI-an evolutionary bridge between DNA endonuclease and topoisomerase
-
Huai, Q., Colandene, J.D., Chen, Y., Luo, F., Zhao, Y., Topal, M.D., Ke, H. (2000) Crystal structure of NaeI-an evolutionary bridge between DNA endonuclease and topoisomerase. EMBO J., 19, 3110-3118.
-
(2000)
EMBO J.
, vol.19
, pp. 3110-3118
-
-
Huai, Q.1
Colandene, J.D.2
Chen, Y.3
Luo, F.4
Zhao, Y.5
Topal, M.D.6
Ke, H.7
-
230
-
-
0028932881
-
Structure and function of restriction endonucleases
-
Aggarwal, A.K. (1995) Structure and function of restriction endonucleases. Curr. Opin. Struct. Biol., 5, 11-19.
-
(1995)
Curr. Opin. Struct. Biol.
, vol.5
, pp. 11-19
-
-
Aggarwal, A.K.1
-
231
-
-
0028172810
-
Five-stranded beta-sheet sandwiched with two-helices: A structural link between restriction endonucleases EcoRI and EcoRV
-
Venclovas, C., Timinskas, A., Siksnys, V. (1994) Five-stranded beta-sheet sandwiched with two-helices: a structural link between restriction endonucleases EcoRI and EcoRV. Proteins, 20, 279-282.
-
(1994)
Proteins
, vol.20
, pp. 279-282
-
-
Venclovas, C.1
Timinskas, A.2
Siksnys, V.3
-
232
-
-
0037531222
-
PspGI, a type II restriction endonuclease from the extreme thermophile Pyrococcus sp.: Structural and functional studies to investigate an evolutionary relationship with several mesophilic restriction enzymes
-
Pingoud, V., Conzelmann, C., Kinzebach, S., Sudina, A., Metelev, V., Kubareva, E., Bujnicki, J.M., Lurz, R., Luder, G., Xu, S.Y. et al. (2003) PspGI, a type II restriction endonuclease from the extreme thermophile Pyrococcus sp.: structural and functional studies to investigate an evolutionary relationship with several mesophilic restriction enzymes. J. Mol. Biol., 329, 913-929.
-
(2003)
J. Mol. Biol.
, vol.329
, pp. 913-929
-
-
Pingoud, V.1
Conzelmann, C.2
Kinzebach, S.3
Sudina, A.4
Metelev, V.5
Kubareva, E.6
Bujnicki, J.M.7
Lurz, R.8
Luder, G.9
Xu, S.Y.10
-
233
-
-
11344287431
-
-
Pingoud, A (ed) Springer, Berlin
-
Bujnicki, J.M. (2004) In: Pingoud, A (ed). Restriction Endonucleases. Springer, Berlin, pp. 63-93.
-
(2004)
Restriction Endonucleases
, pp. 63-93
-
-
Bujnicki, J.M.1
-
234
-
-
0037134458
-
Evolutionary relationship between different subgroups of restriction endonucleases
-
Pingoud, V., Kubareva, E., Stengel, G., Friedhoff, P., Bujnicki, J.M., Urbanke, C., Sudina, A., Pingoud, A. (2002) Evolutionary relationship between different subgroups of restriction endonucleases. J. Biol. Chem., 277, 14306-14314.
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 14306-14314
-
-
Pingoud, V.1
Kubareva, E.2
Stengel, G.3
Friedhoff, P.4
Bujnicki, J.M.5
Urbanke, C.6
Sudina, A.7
Pingoud, A.8
-
235
-
-
0032527739
-
BfiI, a restriction endonuclease from Bacillus firmus S8120, which recognizes the novel non-palindromic sequence 5'-ACTGGG(N)5/4-3'
-
Vitkute, J., Maneliene, Z., Petrusyte, M., Janulaitis, A. (1998) BfiI, a restriction endonuclease from Bacillus firmus S8120, which recognizes the novel non-palindromic sequence 5'-ACTGGG(N)5/4-3'. Nucleic Acids Res., 26, 3348-3349.
-
(1998)
Nucleic Acids Res.
, vol.26
, pp. 3348-3349
-
-
Vitkute, J.1
Maneliene, Z.2
Petrusyte, M.3
Janulaitis, A.4
-
236
-
-
0034613269
-
Novel subtype of type IIs restriction enzymes. BfiI endonuclease exhibits similarities to the EDTA-resistant nuclease Nuc of Salmonella typhimurium
-
Sapranauskas, R., Sasnauskas, G., Lagunavicius, A., Vilkaitis, G., Lubys, A., Siksnys, V. (2000) Novel subtype of type IIs restriction enzymes. BfiI endonuclease exhibits similarities to the EDTA-resistant nuclease Nuc of Salmonella typhimurium. J. Biol. Chem., 275, 30878-30885.
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 30878-30885
-
-
Sapranauskas, R.1
Sasnauskas, G.2
Lagunavicius, A.3
Vilkaitis, G.4
Lubys, A.5
Siksnys, V.6
-
237
-
-
11344267268
-
Type II restriction endonuclease R.KpnI is a member of the HNH nuclease superfamily
-
Saravanan, M., Bujnicki, J.M., Cymerman, I.A., Rao, D.N., Nagaraja, V. (2004) Type II restriction endonuclease R.KpnI is a member of the HNH nuclease superfamily. Nucleic Acids Res., 32, 6129-6135.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 6129-6135
-
-
Saravanan, M.1
Bujnicki, J.M.2
Cymerman, I.A.3
Rao, D.N.4
Nagaraja, V.5
-
238
-
-
67649888360
-
Crystal structure of the {beta}{beta}{alpha}-Me type II restriction endonuclease Hpy99I with target DNA
-
Sokolowska, M., Czapinska, H., Bochtler, M. (2009) Crystal structure of the {beta}{beta}{alpha}-Me type II restriction endonuclease Hpy99I with target DNA. Nucleic Acids Res., 37, 3799-3810.
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 3799-3810
-
-
Sokolowska, M.1
Czapinska, H.2
Bochtler, M.3
-
239
-
-
77957803837
-
Folding, DNA recognition, and function of GIY-YIG endonucleases: Crystal structures of R.Eco29kI
-
Mak, A.N., Lambert, A.R., Stoddard, B.L. (2010) Folding, DNA recognition, and function of GIY-YIG endonucleases: crystal structures of R.Eco29kI. Structure, 18, 1321-1331.
-
(2010)
Structure
, vol.18
, pp. 1321-1331
-
-
Mak, A.N.1
Lambert, A.R.2
Stoddard, B.L.3
-
240
-
-
60849102182
-
Type II restriction endonuclease R.Hpy188I belongs to the GIY-YIG nuclease superfamily, but exhibits an unusual active site
-
Kaminska, K.H., Kawai, M., Boniecki, M., Kobayashi, I., Bujnicki, J.M. (2008) Type II restriction endonuclease R.Hpy188I belongs to the GIY-YIG nuclease superfamily, but exhibits an unusual active site. BMC Struct. Biol., 8, 48.
-
(2008)
BMC Struct. Biol.
, vol.8
, pp. 48
-
-
Kaminska, K.H.1
Kawai, M.2
Boniecki, M.3
Kobayashi, I.4
Bujnicki, J.M.5
-
241
-
-
79952332536
-
Hpy188I-DNA pre- and post-cleavage complexes-snapshots of the GIY-YIG nuclease mediated catalysis
-
Sokolowska, M., Czapinska, H., Bochtler, M. (2011) Hpy188I-DNA pre- and post-cleavage complexes-snapshots of the GIY-YIG nuclease mediated catalysis. Nucleic Acids Res., 39, 1554-1564.
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. 1554-1564
-
-
Sokolowska, M.1
Czapinska, H.2
Bochtler, M.3
-
242
-
-
0035150384
-
Polyphyletic evolution of type II restriction enzymes revisited: Two independent sources of second-hand folds revealed
-
Bujnicki, J.M., Rychlewski, L., Radlinska, M. (2001) Polyphyletic evolution of type II restriction enzymes revisited: two independent sources of second-hand folds revealed. Trends Biochem. Sci., 26, 9-11.
-
(2001)
Trends Biochem. Sci.
, vol.26
, pp. 9-11
-
-
Bujnicki, J.M.1
Rychlewski, L.2
Radlinska, M.3
-
243
-
-
14244254584
-
Specificity changes in the evolution of Type II restriction endonucleases-a biochemical and bioinformatic analysis of restriction enzymes that recognize unrelated sequences
-
Pingoud, V., Sudina, A., Geyer, H., Bujnicki, J.M., Lurz, R., Luder, G., Morgan, R., Kubareva, E., Pingoud, A. (2005) Specificity changes in the evolution of Type II restriction endonucleases-a biochemical and bioinformatic analysis of restriction enzymes that recognize unrelated sequences. J. Biol. Chem., 280, 4289-4298.
-
(2005)
J. Biol. Chem.
, vol.280
, pp. 4289-4298
-
-
Pingoud, V.1
Sudina, A.2
Geyer, H.3
Bujnicki, J.M.4
Lurz, R.5
Luder, G.6
Morgan, R.7
Kubareva, E.8
Pingoud, A.9
-
244
-
-
0021161793
-
Isolation of gram quantities of EcoRI restriction and modification enzymes from an overproducing strain
-
Cheng, S.C., Kim, R., King, K., Kim, S.H., Modrich, P. (1984) Isolation of gram quantities of EcoRI restriction and modification enzymes from an overproducing strain. J. Biol. Chem., 259, 11571-11575.
-
(1984)
J. Biol. Chem.
, vol.259
, pp. 11571-11575
-
-
Cheng, S.C.1
Kim, R.2
King, K.3
Kim, S.H.4
Modrich, P.5
-
245
-
-
0022180173
-
High-level production of the EcoRI endonuclease under the control of the pL promoter of bacteriophage lambda
-
Botterman, J., Zabeau, M. (1985) High-level production of the EcoRI endonuclease under the control of the pL promoter of bacteriophage lambda. Gene, 37, 229-239.
-
(1985)
Gene
, vol.37
, pp. 229-239
-
-
Botterman, J.1
Zabeau, M.2
-
246
-
-
0023781763
-
Genetic approach to facilitate purification of recombinant proteins with a novel metal chelate adsorbent
-
Hochuli, E., Bannwarth, W., Dobeli, H., Gentz, R., Stuber, D. (1988) Genetic approach to facilitate purification of recombinant proteins with a novel metal chelate adsorbent. Nat. Biotechnol., 6, 1321-1325.
-
(1988)
Nat. Biotechnol.
, vol.6
, pp. 1321-1325
-
-
Hochuli, E.1
Bannwarth, W.2
Dobeli, H.3
Gentz, R.4
Stuber, D.5
-
247
-
-
0022964809
-
Structure of the DNA-EcoRI endonuclease recognition complex at 3 angstrom resolution
-
McClarin, J.A., Frederick, C.A., Wang, B.C., Greene, P., Boyer, H.W., Grable, J., Rosenberg, J.M. (1986) Structure of the DNA-EcoRI endonuclease recognition complex at 3 angstrom resolution. Science, 234, 1526-1541.
-
(1986)
Science
, vol.234
, pp. 1526-1541
-
-
McClarin, J.A.1
Frederick, C.A.2
Wang, B.C.3
Greene, P.4
Boyer, H.W.5
Grable, J.6
Rosenberg, J.M.7
-
248
-
-
0018079391
-
Mutagenesis at a specific position in a DNA sequence
-
Hutchison, C.A. 3rd, Phillips, S., Edgell, M.H., Gillam, S., Jahnke, P., Smith, M. (1978) Mutagenesis at a specific position in a DNA sequence. J. Biol. Chem., 253, 6551-6560.
-
(1978)
J. Biol. Chem.
, vol.253
, pp. 6551-6560
-
-
Hutchison III, C.A.1
Phillips, S.2
Edgell, M.H.3
Gillam, S.4
Jahnke, P.5
Smith, M.6
-
249
-
-
0024589458
-
Changing the hydrogen-bonding potential in the DNA binding site of EcoRI by site-directed mutagenesis drastically reduces the enzymatic activity, not the preference of this restriction endonuclease for cleavage within the site GAATTC
-
Alves, J., Ruter, T., Geiger, R., Fliess, A., Maass, G., Pingoud, A. (1989) Changing the hydrogen-bonding potential in the DNA binding site of EcoRI by site-directed mutagenesis drastically reduces the enzymatic activity, not the preference of this restriction endonuclease for cleavage within the site GAATTC. Biochemistry, 28, 2678-2684.
-
(1989)
Biochemistry
, vol.28
, pp. 2678-2684
-
-
Alves, J.1
Ruter, T.2
Geiger, R.3
Fliess, A.4
Maass, G.5
Pingoud, A.6
-
250
-
-
84904004247
-
Characterization of three EcoRI endonuclease mutants with altered DNA-protein contacts designed to change specificity
-
Day, J.P., Reich, N.O., Hager, P., Rosenberg, J., McClarin, J.A., Grable, J., Boyer, H.W., Greene, P.J. (1987) Characterization of three EcoRI endonuclease mutants with altered DNA-protein contacts designed to change specificity. J. Cell Biochem. Suppl., 11C, 205.
-
(1987)
J. Cell Biochem.
, vol.11 C
, Issue.SUPPL.
, pp. 205
-
-
Day, J.P.1
Reich, N.O.2
Hager, P.3
Rosenberg, J.4
McClarin, J.A.5
Grable, J.6
Boyer, H.W.7
Greene, P.J.8
-
251
-
-
0025606326
-
Probing the role of glutamic acid 144 in the EcoRI endonuclease using aspartic acid and glutamine replacements
-
Hager, P.W., Reich, N.O., Day, J.P., Coche, T.G., Boyer, H.W., Rosenberg, J.M., Greene, P.J. (1990) Probing the role of glutamic acid 144 in the EcoRI endonuclease using aspartic acid and glutamine replacements. J. Biol. Chem., 265, 21520-21526.
-
(1990)
J. Biol. Chem.
, vol.265
, pp. 21520-21526
-
-
Hager, P.W.1
Reich, N.O.2
Day, J.P.3
Coche, T.G.4
Boyer, H.W.5
Rosenberg, J.M.6
Greene, P.J.7
-
252
-
-
0025171673
-
Mutants of the EcoRI endonuclease with promiscuous substrate specificity implicate residues involved in substrate recognition
-
Heitman, J., Model, P. (1990) Mutants of the EcoRI endonuclease with promiscuous substrate specificity implicate residues involved in substrate recognition. EMBO J., 9, 3369-3378.
-
(1990)
EMBO J.
, vol.9
, pp. 3369-3378
-
-
Heitman, J.1
Model, P.2
-
253
-
-
84904015265
-
Functional sites of the EcoRI restriction endonuclease probed by site directed mutagenesis
-
Pingoud, A., Geiger, R., Alves, J., Oelgeschlager, T., Ruter, T. (1989) Functional sites of the EcoRI restriction endonuclease probed by site directed mutagenesis. Biol. Chem. Hoppe Seyler, 370, 943-944.
-
(1989)
Biol. Chem. Hoppe Seyler
, vol.370
, pp. 943-944
-
-
Pingoud, A.1
Geiger, R.2
Alves, J.3
Oelgeschlager, T.4
Ruter, T.5
-
254
-
-
0023057187
-
Site directed mutagenesis experiments suggest that Glu 111, Glu 144 and Arg 145 are essential for endonucleolytic activity of EcoRI
-
Wolfes, H., Alves, J., Fliess, A., Geiger, R., Pingoud, A. (1986) Site directed mutagenesis experiments suggest that Glu 111, Glu 144 and Arg 145 are essential for endonucleolytic activity of EcoRI. Nucleic Acids Res., 14, 9063-9080.
-
(1986)
Nucleic Acids Res.
, vol.14
, pp. 9063-9080
-
-
Wolfes, H.1
Alves, J.2
Fliess, A.3
Geiger, R.4
Pingoud, A.5
-
255
-
-
0024359479
-
The negative charge of Glu-111 is required to activate the cleavage center of EcoRI endonuclease
-
Wright, D.J., King, K., Modrich, P. (1989) The negative charge of Glu-111 is required to activate the cleavage center of EcoRI endonuclease. J. Biol. Chem., 264, 11816-11821.
-
(1989)
J. Biol. Chem.
, vol.264
, pp. 11816-11821
-
-
Wright, D.J.1
King, K.2
Modrich, P.3
-
256
-
-
0027464412
-
Mutational analysis of the function of Gln115 in the EcoRI restriction endonuclease, a critical amino acid for recognition of the inner thymidine residue in the sequence -GAATTC- and for coupling specific DNA binding to catalysis
-
Jeltsch, A., Alves, J., Oelgeschlager, T., Wolfes, H., Maass, G., Pingoud, A. (1993) Mutational analysis of the function of Gln115 in the EcoRI restriction endonuclease, a critical amino acid for recognition of the inner thymidine residue in the sequence -GAATTC- and for coupling specific DNA binding to catalysis. J. Mol. Biol., 229, 221-234.
-
(1993)
J. Mol. Biol.
, vol.229
, pp. 221-234
-
-
Jeltsch, A.1
Alves, J.2
Oelgeschlager, T.3
Wolfes, H.4
Maass, G.5
Pingoud, A.6
-
257
-
-
0028023146
-
Protein engineering of the restriction endonuclease EcoRV: Replacement of an amino acid residue in the DNA binding site leads to an altered selectivity towards unmodified and modified substrates
-
Wenz, C., Selent, U., Wende, W., Jeltsch, A., Wolfes, H., Pingoud, A. (1994) Protein engineering of the restriction endonuclease EcoRV: replacement of an amino acid residue in the DNA binding site leads to an altered selectivity towards unmodified and modified substrates. Biochim. Biophys. Acta, 1219, 73-80.
-
(1994)
Biochim. Biophys. Acta
, vol.1219
, pp. 73-80
-
-
Wenz, C.1
Selent, U.2
Wende, W.3
Jeltsch, A.4
Wolfes, H.5
Pingoud, A.6
-
258
-
-
0025187081
-
Refinement of EcoRI endonuclease crystal structure: A revised protein chain tracing
-
Kim, Y., Grable, J.C., Love, R., Greene, P.J., Rosenberg, J.M. (1990) Refinement of EcoRI endonuclease crystal structure: a revised protein chain tracing. Science, 249, 1307-1309.
-
(1990)
Science
, vol.249
, pp. 1307-1309
-
-
Kim, Y.1
Grable, J.C.2
Love, R.3
Greene, P.J.4
Rosenberg, J.M.5
-
259
-
-
0027159254
-
The crystal structure of EcoRV endonuclease and of its complexes with cognate and non-cognate DNA fragments
-
Winkler, F.K., Banner, D.W., Oefner, C., Tsernoglou, D., Brown, R.S., Heathman, S.P., Bryan, R.K., Martin, P.D., Petratos, K., Wilson, K.S. (1993) The crystal structure of EcoRV endonuclease and of its complexes with cognate and non-cognate DNA fragments. EMBO J., 12, 1781-1795.
-
(1993)
EMBO J.
, vol.12
, pp. 1781-1795
-
-
Winkler, F.K.1
Banner, D.W.2
Oefner, C.3
Tsernoglou, D.4
Brown, R.S.5
Heathman, S.P.6
Bryan, R.K.7
Martin, P.D.8
Petratos, K.9
Wilson, K.S.10
-
260
-
-
0028024850
-
Structure of PvuII endonuclease with cognate DNA
-
Cheng, X., Balendiran, K., Schildkraut, I., Anderson, J.E. (1994) Structure of PvuII endonuclease with cognate DNA. EMBO J., 13, 3927-3935.
-
(1994)
EMBO J.
, vol.13
, pp. 3927-3935
-
-
Cheng, X.1
Balendiran, K.2
Schildkraut, I.3
Anderson, J.E.4
-
261
-
-
0029048413
-
Structure of BamHI endonuclease bound to DNA: Partial folding and unfolding on DNA binding
-
Newman, M., Strzelecka, T., Dorner, L.F., Schildkraut, I., Aggarwal, A.K. (1995) Structure of BamHI endonuclease bound to DNA: partial folding and unfolding on DNA binding. Science, 269, 656-663.
-
(1995)
Science
, vol.269
, pp. 656-663
-
-
Newman, M.1
Strzelecka, T.2
Dorner, L.F.3
Schildkraut, I.4
Aggarwal, A.K.5
-
262
-
-
0030790696
-
Structure of the multimodular endonuclease FokI bound to DNA
-
Wah, D.A., Hirsch, J.A., Dorner, L.F., Schildkraut, I., Aggarwal, A.K. (1997) Structure of the multimodular endonuclease FokI bound to DNA. Nature, 388, 97-100.
-
(1997)
Nature
, vol.388
, pp. 97-100
-
-
Wah, D.A.1
Hirsch, J.A.2
Dorner, L.F.3
Schildkraut, I.4
Aggarwal, A.K.5
-
263
-
-
0032530311
-
Crystal structure of restriction endonuclease BglI bound to its interrupted DNA recognition sequence
-
Newman, M., Lunnen, K., Wilson, G., Greci, J., Schildkraut, I., Phillips, S.E.V. (1998) Crystal structure of restriction endonuclease BglI bound to its interrupted DNA recognition sequence. EMBO J., 17, 5466-5476.
-
(1998)
EMBO J.
, vol.17
, pp. 5466-5476
-
-
Newman, M.1
Lunnen, K.2
Wilson, G.3
Greci, J.4
Schildkraut, I.5
Phillips, S.E.V.6
-
264
-
-
0033229820
-
Crystal structure of MunI restriction endonuclease in complex with cognate DNA at 1.7 A resolution
-
Deibert, M., Grazulis, S., Janulaitis, A., Siksnys, V., Huber, R. (1999) Crystal structure of MunI restriction endonuclease in complex with cognate DNA at 1.7 A resolution. EMBO J., 18, 5805-5816.
-
(1999)
EMBO J.
, vol.18
, pp. 5805-5816
-
-
Deibert, M.1
Grazulis, S.2
Janulaitis, A.3
Siksnys, V.4
Huber, R.5
-
265
-
-
0027536144
-
Restriction endonucleases and modification methylases
-
Anderson, J.E. (1993) Restriction endonucleases and modification methylases. Curr. Opin. Struct. Biol., 3, 24-30.
-
(1993)
Curr. Opin. Struct. Biol.
, vol.3
, pp. 24-30
-
-
Anderson, J.E.1
-
266
-
-
0026696177
-
A site-directed mutagenesis study to identify amino acid residues involved in the catalytic function of the restriction endonuclease EcoRV
-
Selent, U., Ruter, T., Kohler, E., Liedtke, M., Thielking, V., Alves, J., Oelgeschlager, T., Wolfes, H., Peters, F., Pingoud, A. (1992) A site-directed mutagenesis study to identify amino acid residues involved in the catalytic function of the restriction endonuclease EcoRV. Biochemistry, 31, 4808-4815.
-
(1992)
Biochemistry
, vol.31
, pp. 4808-4815
-
-
Selent, U.1
Ruter, T.2
Kohler, E.3
Liedtke, M.4
Thielking, V.5
Alves, J.6
Oelgeschlager, T.7
Wolfes, H.8
Peters, F.9
Pingoud, A.10
-
267
-
-
84867287187
-
Sequence, structure and functional diversity of PD-(D/E)XK phosphodiesterase superfamily
-
Steczkiewicz, K., Muszewska, A., Knizewski, L., Rychlewski, L., Ginalski, K. (2012) Sequence, structure and functional diversity of PD-(D/E)XK phosphodiesterase superfamily. Nucleic Acids Res., 40, 7016-7045.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 7016-7045
-
-
Steczkiewicz, K.1
Muszewska, A.2
Knizewski, L.3
Rychlewski, L.4
Ginalski, K.5
-
268
-
-
34249862289
-
Topology of Type II REases revisited; Structural classes and the common conserved core
-
Niv, M.Y., Ripoll, D.R., Vila, J.A., Liwo, A., Vanamee, E.S., Aggarwal, A.K., Weinstein, H., Scheraga, H.A. (2007) Topology of Type II REases revisited; structural classes and the common conserved core. Nucleic Acids Res., 35, 2227-2237.
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. 2227-2237
-
-
Niv, M.Y.1
Ripoll, D.R.2
Vila, J.A.3
Liwo, A.4
Vanamee, E.S.5
Aggarwal, A.K.6
Weinstein, H.7
Scheraga, H.A.8
-
269
-
-
4444373591
-
An asymmetric complex of restriction endonuclease MspI on its palindromic DNA recognition site
-
Xu, Q.S., Kucera, R.B., Roberts, R.J., Guo, H.C. (2004) An asymmetric complex of restriction endonuclease MspI on its palindromic DNA recognition site. Structure, 12, 1741-1747.
-
(2004)
Structure
, vol.12
, pp. 1741-1747
-
-
Xu, Q.S.1
Kucera, R.B.2
Roberts, R.J.3
Guo, H.C.4
-
270
-
-
0025203657
-
The energetic basis of specificity in the EcoRI endonuclease-DNA interaction
-
Lesser, D.R., Kurpiewski, M.R., Jen-Jacobson, L. (1990) The energetic basis of specificity in the EcoRI endonuclease-DNA interaction. Science, 250, 776-786.
-
(1990)
Science
, vol.250
, pp. 776-786
-
-
Lesser, D.R.1
Kurpiewski, M.R.2
Jen-Jacobson, L.3
-
271
-
-
4644263411
-
Mechanisms of coupling between DNA recognition specificity and catalysis in EcoRI endonuclease
-
Kurpiewski, M.R., Engler, L.E., Wozniak, L.A., Kobylanska, A., Koziolkiewicz, M., Stec, W.J., Jen-Jacobson, L. (2004) Mechanisms of coupling between DNA recognition specificity and catalysis in EcoRI endonuclease. Structure, 12, 1775-1788.
-
(2004)
Structure
, vol.12
, pp. 1775-1788
-
-
Kurpiewski, M.R.1
Engler, L.E.2
Wozniak, L.A.3
Kobylanska, A.4
Koziolkiewicz, M.5
Stec, W.J.6
Jen-Jacobson, L.7
-
272
-
-
0028989426
-
Saturation mutagenesis of His114 of EcoRI reveals relaxed-specificity mutants
-
Flores, H., Osuna, J., Heitman, J., Soberon, X. (1995) Saturation mutagenesis of His114 of EcoRI reveals relaxed-specificity mutants. Gene, 157, 295-301.
-
(1995)
Gene
, vol.157
, pp. 295-301
-
-
Flores, H.1
Osuna, J.2
Heitman, J.3
Soberon, X.4
-
273
-
-
0024580125
-
Genetic engineering of EcoRI mutants with altered amino acid residues in the DNA binding site: Physiochemical investigations give evidence for an altered monomer/dimer equilibrium for the Gln144Lys145 and Gln144Lys145Lys200 mutants
-
Geiger, R., Ruter, T., Alves, J., Fliess, A., Wolfes, H., Pingoud, V., Urbanke, C., Maass, G., Pingoud, A., Dusterhoft, A. et al. (1989) Genetic engineering of EcoRI mutants with altered amino acid residues in the DNA binding site: physiochemical investigations give evidence for an altered monomer/dimer equilibrium for the Gln144Lys145 and Gln144Lys145Lys200 mutants. Biochemistry, 28, 2667-2677.
-
(1989)
Biochemistry
, vol.28
, pp. 2667-2677
-
-
Geiger, R.1
Ruter, T.2
Alves, J.3
Fliess, A.4
Wolfes, H.5
Pingoud, V.6
Urbanke, C.7
Maass, G.8
Pingoud, A.9
Dusterhoft, A.10
-
274
-
-
0024379261
-
Glu-111 is required for activation of the DNA cleavage center of EcoRI endonuclease
-
King, K., Benkovic, S.J., Modrich, P. (1989) Glu-111 is required for activation of the DNA cleavage center of EcoRI endonuclease. J. Biol. Chem., 264, 11807-11815.
-
(1989)
J. Biol. Chem.
, vol.264
, pp. 11807-11815
-
-
King, K.1
Benkovic, S.J.2
Modrich, P.3
-
275
-
-
0024671737
-
Determinants of EcoRI endonuclease sequence discrimination
-
Needels, M.C., Fried, S.R., Love, R., Rosenberg, J.M., Boyer, H.W., Greene, P.J. (1989) Determinants of EcoRI endonuclease sequence discrimination. Proc. Natl. Acad. Sci. U. S. A., 86, 3579-3583.
-
(1989)
Proc. Natl. Acad. Sci. U. S. A.
, vol.86
, pp. 3579-3583
-
-
Needels, M.C.1
Fried, S.R.2
Love, R.3
Rosenberg, J.M.4
Boyer, H.W.5
Greene, P.J.6
-
276
-
-
0025925029
-
Combinatorial mutagenesis of three major groove-contacting residues of EcoRI: Single and double amino acid replacements retaining methyltransferase- sensitive activities
-
Osuna, J., Flores, H., Soberon, X. (1991) Combinatorial mutagenesis of three major groove-contacting residues of EcoRI: single and double amino acid replacements retaining methyltransferase-sensitive activities. Gene, 106, 7-12.
-
(1991)
Gene
, vol.106
, pp. 7-12
-
-
Osuna, J.1
Flores, H.2
Soberon, X.3
-
277
-
-
0023623803
-
Clustering of null mutations in the EcoRI endonuclease
-
Yanofsky, S.D., Love, R., McClarin, J.A., Rosenberg, J.M., Boyer, H.W., Greene, P.J. (1987) Clustering of null mutations in the EcoRI endonuclease. Proteins, 2, 273-282.
-
(1987)
Proteins
, vol.2
, pp. 273-282
-
-
Yanofsky, S.D.1
Love, R.2
McClarin, J.A.3
Rosenberg, J.M.4
Boyer, H.W.5
Greene, P.J.6
-
278
-
-
0026898962
-
How the EcoRI endonuclese recognizes and cleaves DNA
-
Heitman, J. (1992) How the EcoRI endonuclese recognizes and cleaves DNA. BioEssays, 14, 445-454.
-
(1992)
BioEssays
, vol.14
, pp. 445-454
-
-
Heitman, J.1
-
280
-
-
0024974062
-
Fluorescence stopped-flow kinetics of the cleavage of synthetic oligodeoxynucleotides by the EcoRI restriction endonuclease
-
Alves, J., Urbanke, C., Fliess, A., Maass, G., Pingoud, A. (1989) Fluorescence stopped-flow kinetics of the cleavage of synthetic oligodeoxynucleotides by the EcoRI restriction endonuclease. Biochemistry, 28, 7879-7888.
-
(1989)
Biochemistry
, vol.28
, pp. 7879-7888
-
-
Alves, J.1
Urbanke, C.2
Fliess, A.3
Maass, G.4
Pingoud, A.5
-
281
-
-
0028988416
-
Mg2+ binding to the active site of EcoRV endonuclease: A crystallographic study of complexes with substrate and product DNA at 2 angstrom resolution
-
Kostrewa, D., Winkler, F.K. (1995) Mg2+ binding to the active site of EcoRV endonuclease: a crystallographic study of complexes with substrate and product DNA at 2 angstrom resolution. Biochemistry, 34, 683-696.
-
(1995)
Biochemistry
, vol.34
, pp. 683-696
-
-
Kostrewa, D.1
Winkler, F.K.2
-
282
-
-
0028298842
-
Structure of restriction endonuclease BamHI and its relationship to EcoRI
-
Newman, M., Strzelecka, T., Dorner, L.F., Schildkraut, I., Aggarwal, A.K. (1994) Structure of restriction endonuclease BamHI and its relationship to EcoRI. Nature, 368, 660-664.
-
(1994)
Nature
, vol.368
, pp. 660-664
-
-
Newman, M.1
Strzelecka, T.2
Dorner, L.F.3
Schildkraut, I.4
Aggarwal, A.K.5
-
283
-
-
0027469537
-
Determination of the DNA bend angle induced by the restriction endonuclease EcoRV in the presence of Mg2++
-
Stover, T., Kohler, E., Fagin, U., Wende, W., Wolfes, H., Pingoud, A. (1993) Determination of the DNA bend angle induced by the restriction endonuclease EcoRV in the presence of Mg2++. J. Biol. Chem., 268, 8645-8650.
-
(1993)
J. Biol. Chem.
, vol.268
, pp. 8645-8650
-
-
Stover, T.1
Kohler, E.2
Fagin, U.3
Wende, W.4
Wolfes, H.5
Pingoud, A.6
-
284
-
-
0028934112
-
Specific DNA recognition by EcoRV restriction endonuclease induced by calcium ions
-
Vipond, I.B., Halford, S.E. (1995) Specific DNA recognition by EcoRV restriction endonuclease induced by calcium ions. Biochemistry, 34, 1113-1119.
-
(1995)
Biochemistry
, vol.34
, pp. 1113-1119
-
-
Vipond, I.B.1
Halford, S.E.2
-
285
-
-
0029970157
-
Visualizing protein-nucleic acid interactions on a large scale with the scanning force microscope
-
Bustamante, C., Rivetti, C. (1996) Visualizing protein-nucleic acid interactions on a large scale with the scanning force microscope. Annu. Rev. Biophys. Biomol. Struct., 25, 395-429.
-
(1996)
Annu. Rev. Biophys. Biomol. Struct.
, vol.25
, pp. 395-429
-
-
Bustamante, C.1
Rivetti, C.2
-
286
-
-
0029975922
-
Probing the indirect readout of the restriction enzyme EcoRV
-
Wenz, C., Jeltsch, A., Pingoud, A. (1996) Probing the indirect readout of the restriction enzyme EcoRV. J. Biol. Chem., 271, 5565-5573.
-
(1996)
J. Biol. Chem.
, vol.271
, pp. 5565-5573
-
-
Wenz, C.1
Jeltsch, A.2
Pingoud, A.3
-
287
-
-
0029078014
-
DNA binding specificity of the EcoRV restriction endonuclease is increased by Mg2+ binding to a metal ion binding site distinct from the catalytic center of the enzyme
-
Jeltsch, A., Maschke, H., Selent, U., Wenz, C., Kohler, E., Connolly, B.A., Thorogood, H., Pingoud, A. (1995) DNA binding specificity of the EcoRV restriction endonuclease is increased by Mg2+ binding to a metal ion binding site distinct from the catalytic center of the enzyme. Biochemistry, 34, 6239-6246.
-
(1995)
Biochemistry
, vol.34
, pp. 6239-6246
-
-
Jeltsch, A.1
Maschke, H.2
Selent, U.3
Wenz, C.4
Kohler, E.5
Connolly, B.A.6
Thorogood, H.7
Pingoud, A.8
-
288
-
-
0029804092
-
EcoRV-T94V: A mutant restriction endonucleaase with an altered substrate specificity towards modified oligodeoxynucleotides
-
Lanio, T., Selent, U., Wenz, C., Wende, W., Schulz, A., Adiraj, M., Katti, S.B., Pingoud, A. (1996) EcoRV-T94V: a mutant restriction endonucleaase with an altered substrate specificity towards modified oligodeoxynucleotides. Protein Eng., 9, 1005-1010.
-
(1996)
Protein Eng.
, vol.9
, pp. 1005-1010
-
-
Lanio, T.1
Selent, U.2
Wenz, C.3
Wende, W.4
Schulz, A.5
Adiraj, M.6
Katti, S.B.7
Pingoud, A.8
-
289
-
-
0026755152
-
EcoRV restriction endonuclease: Communication between DNA recognition and catalysis
-
Vermote, C.L.M., Vipond, I.B., Halford, S.E. (1992) EcoRV restriction endonuclease: communication between DNA recognition and catalysis. Biochemistry, 31, 6089-6097.
-
(1992)
Biochemistry
, vol.31
, pp. 6089-6097
-
-
Vermote, C.L.M.1
Vipond, I.B.2
Halford, S.E.3
-
290
-
-
0024240952
-
Analysis of the recognition mechanism involved in the EcoRV catalyzed cleavage of DNA using modified oligodeoxynucleotides
-
Fliess, A., Wolfes, H., Seela, F., Pingoud, A. (1988) Analysis of the recognition mechanism involved in the EcoRV catalyzed cleavage of DNA using modified oligodeoxynucleotides. Nucleic Acids Res., 16, 11781-11793.
-
(1988)
Nucleic Acids Res.
, vol.16
, pp. 11781-11793
-
-
Fliess, A.1
Wolfes, H.2
Seela, F.3
Pingoud, A.4
-
291
-
-
0024339119
-
Effects of functional group changes in the EcoRV recognition site on the cleavage reaction catalyzed by the endonuclease
-
Mazzarelli, J., Scholtissek, S., McLaughlin, L.W. (1989) Effects of functional group changes in the EcoRV recognition site on the cleavage reaction catalyzed by the endonuclease. Biochemistry, 28, 4616-4622.
-
(1989)
Biochemistry
, vol.28
, pp. 4616-4622
-
-
Mazzarelli, J.1
Scholtissek, S.2
McLaughlin, L.W.3
-
292
-
-
0025151421
-
Incorporation of a complete set of deoxyadenosine and thymidine analogues suitable for the study of protein nucleic acid interactions into oligodeoxynucleotides. Application to the EcoRV restriction endonuclease and modification methylase
-
Newman, P.C., Nwosu, V.U., Williams, D.M., Cosstick, R., Seela, F., Connolly, B.A. (1990) Incorporation of a complete set of deoxyadenosine and thymidine analogues suitable for the study of protein nucleic acid interactions into oligodeoxynucleotides. Application to the EcoRV restriction endonuclease and modification methylase. Biochemistry, 29, 9891-9901.
-
(1990)
Biochemistry
, vol.29
, pp. 9891-9901
-
-
Newman, P.C.1
Nwosu, V.U.2
Williams, D.M.3
Cosstick, R.4
Seela, F.5
Connolly, B.A.6
-
293
-
-
0025165469
-
Interaction of the EcoRV restriction endonuclease with the deoxyadenosine and thymidine bases in its recognition hexamer d(GATATC)
-
Newman, P.C., Williams, D.M., Cosstick, R., Seela, F., Connolly, B.A. (1990) Interaction of the EcoRV restriction endonuclease with the deoxyadenosine and thymidine bases in its recognition hexamer d(GATATC). Biochemistry, 29, 9902-9910.
-
(1990)
Biochemistry
, vol.29
, pp. 9902-9910
-
-
Newman, P.C.1
Williams, D.M.2
Cosstick, R.3
Seela, F.4
Connolly, B.A.5
-
294
-
-
0028354227
-
Interaction of the restriction endonuclease EcoRV with the deoxyguanosine and deoxycytidine bases in its recognition sequence
-
Waters, T.R., Connolly, B.A. (1994) Interaction of the restriction endonuclease EcoRV with the deoxyguanosine and deoxycytidine bases in its recognition sequence. Biochemistry, 33, 1812-1819.
-
(1994)
Biochemistry
, vol.33
, pp. 1812-1819
-
-
Waters, T.R.1
Connolly, B.A.2
-
295
-
-
0029157302
-
Sequence-specific binding of DNA by the EcoRV restriction and modification enzymes with nucleic acid and cofactor analogues
-
Szczelkun, M.D., Connolly, B.A. (1995) Sequence-specific binding of DNA by the EcoRV restriction and modification enzymes with nucleic acid and cofactor analogues. Biochemistry, 34, 10724-10733.
-
(1995)
Biochemistry
, vol.34
, pp. 10724-10733
-
-
Szczelkun, M.D.1
Connolly, B.A.2
-
296
-
-
0346220020
-
Simultaneous DNA binding and bending by EcoRV endonuclease observed by real-time fluorescence
-
Hiller, D.A., Fogg, J.M., Martin, A.M., Beechem, J.M., Reich, N.O., Perona, J.J. (2003) Simultaneous DNA binding and bending by EcoRV endonuclease observed by real-time fluorescence. Biochemistry, 42, 14375-14385.
-
(2003)
Biochemistry
, vol.42
, pp. 14375-14385
-
-
Hiller, D.A.1
Fogg, J.M.2
Martin, A.M.3
Beechem, J.M.4
Reich, N.O.5
Perona, J.J.6
-
297
-
-
33749039501
-
Positively charged C-terminal subdomains of EcoRV endonuclease: Contributions to DNA binding, bending, and cleavage
-
Hiller, D.A., Perona, J.J. (2006) Positively charged C-terminal subdomains of EcoRV endonuclease: contributions to DNA binding, bending, and cleavage. Biochemistry, 45, 11453-11463.
-
(2006)
Biochemistry
, vol.45
, pp. 11453-11463
-
-
Hiller, D.A.1
Perona, J.J.2
-
298
-
-
0032538889
-
Crosslinking the EcoRV restriction endonuclease across the DNA-binding site reveals transient intermediates and conformational changes of the enzyme during DNA binding and catalytic turnover
-
Schulze, C., Jeltsch, A., Franke, I., Urbanke, C., Pingoud, A. (1998) Crosslinking the EcoRV restriction endonuclease across the DNA-binding site reveals transient intermediates and conformational changes of the enzyme during DNA binding and catalytic turnover. EMBO J., 17, 6757-6766.
-
(1998)
EMBO J.
, vol.17
, pp. 6757-6766
-
-
Schulze, C.1
Jeltsch, A.2
Franke, I.3
Urbanke, C.4
Pingoud, A.5
-
299
-
-
84904015266
-
-
29 May 2014, date last accessed
-
Smith, H.O. (1978). www.nobelprize.org/nobel prizes/medicine/ laureates/1978/smith-lecture.html. (29 May 2014, date last accessed).
-
(1978)
-
-
Smith, H.O.1
-
300
-
-
0004098672
-
How does EcoRI cleave its recognition site on DNA?
-
Halford, S.E. (1983) How does EcoRI cleave its recognition site on DNA? Trends Biochem. Sci., 8, 455-460.
-
(1983)
Trends Biochem Sci.
, vol.8
, pp. 455-460
-
-
Halford, S.E.1
-
301
-
-
16244399036
-
-
Pingoud, A (ed) Springer, Berlin
-
Grigorescu, A., Horvath, M., Wilkosz, P.A., Chandrasekhar, K., Rosenberg, J.M. (2004) In: Pingoud, A (ed). Restriction Endonucleases. Springer, Berlin, pp. 137-177.
-
(2004)
Restriction Endonucleases
, pp. 137-177
-
-
Grigorescu, A.1
Horvath, M.2
Wilkosz, P.A.3
Chandrasekhar, K.4
Rosenberg, J.M.5
-
302
-
-
17044397618
-
-
Pingoud, A (ed) Springer, Berlin
-
Winkler, F.K., Prota, A.E. (2004) In: Pingoud, A (ed). Restriction Endonucleases. Springer, Berlin, pp. 179-214.
-
(2004)
Restriction Endonucleases
, pp. 179-214
-
-
Winkler, F.K.1
Prota, A.E.2
-
303
-
-
27344446537
-
Non-cognate enzyme-DNA complex: Structural and kinetic analysis of EcoRV endonuclease bound to the EcoRI recognition site GAATTC
-
Hiller, D.A., Rodriguez, A.M., Perona, J.J. (2005) Non-cognate enzyme-DNA complex: structural and kinetic analysis of EcoRV endonuclease bound to the EcoRI recognition site GAATTC. J. Mol. Biol., 354, 121-136.
-
(2005)
J. Mol. Biol.
, vol.354
, pp. 121-136
-
-
Hiller, D.A.1
Rodriguez, A.M.2
Perona, J.J.3
-
304
-
-
84903999444
-
Restriction endonucleases, the ultimate in sequence specific DNA recognition
-
Winkler, F.K. (1994) Restriction endonucleases, the ultimate in sequence specific DNA recognition. J. Mol. Recognit., 6, 9.
-
(1994)
J. Mol. Recognit.
, vol.6
, pp. 9
-
-
Winkler, F.K.1
-
305
-
-
0029991992
-
Influence of the phosphate backbone on the restriction and hydrolysis of DNA by the EcoRV restriction endonuclease
-
Thorogood, H., Grasby, J.A., Connolly, B.A. (1996) Influence of the phosphate backbone on the restriction and hydrolysis of DNA by the EcoRV restriction endonuclease. J. Biol. Chem., 271, 8855-8862.
-
(1996)
J. Biol. Chem.
, vol.271
, pp. 8855-8862
-
-
Thorogood, H.1
Grasby, J.A.2
Connolly, B.A.3
-
306
-
-
0030183768
-
Engineering novel restriction endonucleases: Principles and applications
-
Jeltsch, A., Wenz, C., Wende, W., Selent, U., Pingoud, A. (1996) Engineering novel restriction endonucleases: principles and applications. Trends Biotechnol., 14, 235-238.
-
(1996)
Trends Biotechnol.
, vol.14
, pp. 235-238
-
-
Jeltsch, A.1
Wenz, C.2
Wende, W.3
Selent, U.4
Pingoud, A.5
-
307
-
-
17044362158
-
-
Pingoud, A (ed) Springer, Berlin
-
Alves, J., Vennekol, P. (2004) In: Pingoud, A (ed). Restriction Endonucleases. Springer, Berlin, pp. 393-411.
-
(2004)
Restriction Endonucleases
, pp. 393-411
-
-
Alves, J.1
Vennekol, P.2
-
308
-
-
0033634983
-
Structure of BamHI bound to nonspecific DNA: A model for DNA sliding
-
Viadiu, H., Aggarwal, A.K. (2000) Structure of BamHI bound to nonspecific DNA: a model for DNA sliding. Mol. Cell, 5, 889-895.
-
(2000)
Mol. Cell
, vol.5
, pp. 889-895
-
-
Viadiu, H.1
Aggarwal, A.K.2
-
309
-
-
33847784924
-
Site-specific DNA transesterification catalyzed by a restriction enzyme
-
Sasnauskas, G., Connolly, B.A., Halford, S.E., Siksnys, V. (2007) Site-specific DNA transesterification catalyzed by a restriction enzyme. Proc. Natl. Acad. Sci. U.S.A., 104, 2115-2120.
-
(2007)
Proc. Natl. Acad. Sci. U.S.A.
, vol.104
, pp. 2115-2120
-
-
Sasnauskas, G.1
Connolly, B.A.2
Halford, S.E.3
Siksnys, V.4
-
310
-
-
33344465796
-
Biochemical and mutational analysis of EcoRII functional domains reveals evolutionary links between restriction enzymes
-
Tamulaitis, G., Mucke, M., Siksnys, V. (2006) Biochemical and mutational analysis of EcoRII functional domains reveals evolutionary links between restriction enzymes. FEBS Lett., 580, 1665-1671.
-
(2006)
FEBS Lett.
, vol.580
, pp. 1665-1671
-
-
Tamulaitis, G.1
Mucke, M.2
Siksnys, V.3
-
311
-
-
84954358674
-
Structural analysis of the heterodimeric Type IIS restriction endonuclease R.BspD6I acting as a complex between a monomeric site-specific nickase and a catalytic subunit
-
Kachalova, G.S., Rogulin, E.A., Yunusova, A.K., Artyukh, R.I., Perevyazova, T.A., Matvienko, N.I., Zheleznaya, L.A., Bartunik, H.D. (2008) Structural analysis of the heterodimeric Type IIS restriction endonuclease R.BspD6I acting as a complex between a monomeric site-specific nickase and a catalytic subunit. J. Mol. Biol., 384, 489-502.
-
(2008)
J. Mol. Biol.
, vol.384
, pp. 489-502
-
-
Kachalova, G.S.1
Rogulin, E.A.2
Yunusova, A.K.3
Artyukh, R.I.4
Perevyazova, T.A.5
Matvienko, N.I.6
Zheleznaya, L.A.7
Bartunik, H.D.8
-
312
-
-
0029063469
-
Site-directed mutagenesis in the catalytic center of the restriction endonuclease EcoRI
-
Grabowski, G., Jeltsch, A., Wolfes, H., Maass, G., Alves, J. (1995) Site-directed mutagenesis in the catalytic center of the restriction endonuclease EcoRI. Gene, 157, 113-118.
-
(1995)
Gene
, vol.157
, pp. 113-118
-
-
Grabowski, G.1
Jeltsch, A.2
Wolfes, H.3
Maass, G.4
Alves, J.5
-
313
-
-
0033981010
-
Understanding the immutability of restriction enzymes: Crystal structure of BglII and its DNA substrate at 1.5A resolution
-
Lukacs, C.M., Kucera, R., Schildkraut, I., Aggarwal, A.K. (2000) Understanding the immutability of restriction enzymes: crystal structure of BglII and its DNA substrate at 1.5A resolution. Nat. Struct. Biol., 7, 134-140.
-
(2000)
Nat. Struct. Biol.
, vol.7
, pp. 134-140
-
-
Lukacs, C.M.1
Kucera, R.2
Schildkraut, I.3
Aggarwal, A.K.4
-
314
-
-
0029053988
-
Evidence for substrate-assisted catalysis in the DNA cleavage of several restriction endonucleases
-
Jeltsch, A., Pleckaityte, M., Selent, U., Wolfes, H., Siksnys, V., Pingoud, A. (1995) Evidence for substrate-assisted catalysis in the DNA cleavage of several restriction endonucleases. Gene, 157, 157-162.
-
(1995)
Gene
, vol.157
, pp. 157-162
-
-
Jeltsch, A.1
Pleckaityte, M.2
Selent, U.3
Wolfes, H.4
Siksnys, V.5
Pingoud, A.6
-
315
-
-
14044252836
-
Crystal structures of type II restriction endonuclease Eco0109I and its complex with cognate DNA
-
Hashimoto, H., Shimizu, T., Imasaki, T., Kato, M., Shichijo, N., Kita, K., Sato, M. (2005) Crystal structures of type II restriction endonuclease Eco0109I and its complex with cognate DNA. J. Biol. Chem., 280, 5605-5610.
-
(2005)
J. Biol. Chem.
, vol.280
, pp. 5605-5610
-
-
Hashimoto, H.1
Shimizu, T.2
Imasaki, T.3
Kato, M.4
Shichijo, N.5
Kita, K.6
Sato, M.7
-
316
-
-
0033597317
-
DNA cleavage by the EcoRV restriction endonuclease: PH dependence and proton transfers in catalysis
-
Stanford, N.P., Halford, S.E., Baldwin, G.S. (1999) DNA cleavage by the EcoRV restriction endonuclease: pH dependence and proton transfers in catalysis. J. Mol. Biol., 288, 105-116.
-
(1999)
J. Mol. Biol.
, vol.288
, pp. 105-116
-
-
Stanford, N.P.1
Halford, S.E.2
Baldwin, G.S.3
-
317
-
-
0035883723
-
Structure and function of type II restriction endonucleases
-
Pingoud, A., Jeltsch, A. (2001) Structure and function of type II restriction endonucleases. Nucleic Acids Res., 29, 3705-3727.
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 3705-3727
-
-
Pingoud, A.1
Jeltsch, A.2
-
318
-
-
11944269619
-
Structure-energy analysis of the role of metal ions in phosphodiester bond hydrolysis by DNA polymerase i
-
Fothergill, M., Goodman, M.F., Petruska, J., Warshel, A. (1995) Structure-energy analysis of the role of metal ions in phosphodiester bond hydrolysis by DNA polymerase I. J. Am. Chem. Soc., 117, 11619-11627.
-
(1995)
J. Am. Chem. Soc.
, vol.117
, pp. 11619-11627
-
-
Fothergill, M.1
Goodman, M.F.2
Petruska, J.3
Warshel, A.4
-
319
-
-
78149466207
-
Categoric prediction of metal ion mechanisms in the active sites of 17 select type II restriction endonucleases
-
Advani, S., Mishra, P., Dubey, S., Thakur, S. (2010) Categoric prediction of metal ion mechanisms in the active sites of 17 select type II restriction endonucleases. Biochem. Biophys. Res. Commun., 402, 177-179.
-
(2010)
Biochem. Biophys. Res. Commun.
, vol.402
, pp. 177-179
-
-
Advani, S.1
Mishra, P.2
Dubey, S.3
Thakur, S.4
-
320
-
-
0031717755
-
The role of metals in catalysis by the restriction endonuclease BamHI
-
Viadiu, H., Aggarwal, A.K. (1998) The role of metals in catalysis by the restriction endonuclease BamHI. Nat. Struct. Biol., 5, 910-916.
-
(1998)
Nat. Struct. Biol.
, vol.5
, pp. 910-916
-
-
Viadiu, H.1
Aggarwal, A.K.2
-
321
-
-
2642527026
-
DNA cleavage by EcoRV endonuclease: Two metal ions in three metal ion binding sites
-
Horton, N.C., Perona, J.J. (2004) DNA cleavage by EcoRV endonuclease: two metal ions in three metal ion binding sites. Biochemistry, 43, 6841-6857.
-
(2004)
Biochemistry
, vol.43
, pp. 6841-6857
-
-
Horton, N.C.1
Perona, J.J.2
-
322
-
-
70349229163
-
On the divalent metal ion dependence of DNA cleavage by restriction endonucleases of the EcoRI family
-
Pingoud, V., Wende, W., Friedhoff, P., Reuter, M., Alves, J., Jeltsch, A., Mones, L., Fuxreiter, M., Pingoud, A. (2009) On the divalent metal ion dependence of DNA cleavage by restriction endonucleases of the EcoRI family. J. Mol. Biol., 393, 140-160.
-
(2009)
J. Mol. Biol.
, vol.393
, pp. 140-160
-
-
Pingoud, V.1
Wende, W.2
Friedhoff, P.3
Reuter, M.4
Alves, J.5
Jeltsch, A.6
Mones, L.7
Fuxreiter, M.8
Pingoud, A.9
-
323
-
-
77956332252
-
One is enough: Insights into the two-metal ion nuclease mechanism from global analysis and computational studies
-
Dupureur, C.M. (2010) One is enough: insights into the two-metal ion nuclease mechanism from global analysis and computational studies. Metallomics, 2, 609-620.
-
(2010)
Metallomics
, vol.2
, pp. 609-620
-
-
Dupureur, C.M.1
-
324
-
-
17144415297
-
Site-specific DNA-nicking mutants of the heterodimeric restriction endonuclease R.BbvCI
-
Heiter, D.F., Lunnen, K.D., Wilson, G.G. (2005) Site-specific DNA-nicking mutants of the heterodimeric restriction endonuclease R.BbvCI. J. Mol. Biol., 348, 631-640.
-
(2005)
J. Mol. Biol.
, vol.348
, pp. 631-640
-
-
Heiter, D.F.1
Lunnen, K.D.2
Wilson, G.G.3
-
326
-
-
0038652096
-
How the BfiI restriction enzyme uses one active site to cut two DNA strands
-
Sasnauskas, G., Halford, S.E., Siksnys, V. (2003) How the BfiI restriction enzyme uses one active site to cut two DNA strands. Proc. Natl. Acad. Sci. U.S.A., 100, 6410-6415.
-
(2003)
Proc. Natl. Acad. Sci. U.S.A.
, vol.100
, pp. 6410-6415
-
-
Sasnauskas, G.1
Halford, S.E.2
Siksnys, V.3
-
327
-
-
77952308521
-
A novel mechanism for the scission of double-stranded DNA: BfiI cuts both 3'-5' and 5'-3' strands by rotating a single active site
-
Sasnauskas, G., Zakrys, L., Zaremba, M., Cosstick, R., Gaynor, J.W., Halford, S.E., Siksnys, V. (2010) A novel mechanism for the scission of double-stranded DNA: BfiI cuts both 3'-5' and 5'-3' strands by rotating a single active site. Nucleic Acids Res., 38, 2399-2410.
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 2399-2410
-
-
Sasnauskas, G.1
Zakrys, L.2
Zaremba, M.3
Cosstick, R.4
Gaynor, J.W.5
Halford, S.E.6
Siksnys, V.7
-
328
-
-
0032169674
-
Structure of FokI has implications for DNA cleavage
-
Wah, D.A., Bitinaite, J., Schildkraut, I., Aggarwal, A.K. (1998) Structure of FokI has implications for DNA cleavage. Proc. Natl. Acad. Sci. U.S.A., 95, 10564-10569.
-
(1998)
Proc. Natl. Acad. Sci. U.S.A.
, vol.95
, pp. 10564-10569
-
-
Wah, D.A.1
Bitinaite, J.2
Schildkraut, I.3
Aggarwal, A.K.4
-
329
-
-
0032167717
-
FokI dimerization is required for DNA cleavage
-
Bitinaite, J., Wah, D.A., Aggarwal, A.K., Schildkraut, I. (1998) FokI dimerization is required for DNA cleavage. Proc. Natl. Acad. Sci. U.S.A., 95, 10570-10575.
-
(1998)
Proc. Natl. Acad. Sci. U.S.A.
, vol.95
, pp. 10570-10575
-
-
Bitinaite, J.1
Wah, D.A.2
Aggarwal, A.K.3
Schildkraut, I.4
-
330
-
-
25444522883
-
The PD-(D/E)XK superfamily revisited: Identification of new members among proteins involved in DNA metabolism and functional predictions for domains of (hitherto) unknown function
-
Kosinski, J., Feder, M., Bujnicki, J.M. (2005) The PD-(D/E)XK superfamily revisited: identification of new members among proteins involved in DNA metabolism and functional predictions for domains of (hitherto) unknown function. BMC Bioinformatics, 6, 172.
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 172
-
-
Kosinski, J.1
Feder, M.2
Bujnicki, J.M.3
-
331
-
-
33847162746
-
Restriction endonucleases that bridge and excise two recognition sites from DNA
-
Marshall, J.J., Gowers, D.M., Halford, S.E. (2007) Restriction endonucleases that bridge and excise two recognition sites from DNA. J. Mol. Biol., 367, 419-431.
-
(2007)
J. Mol. Biol.
, vol.367
, pp. 419-431
-
-
Marshall, J.J.1
Gowers, D.M.2
Halford, S.E.3
-
332
-
-
84871758926
-
Organization of the BcgI restriction-modification protein for the transfer of one methyl group to DNA
-
Smith, R.M., Jacklin, A.J., Marshall, J.J., Sobott, F., Halford, S.E. (2013) Organization of the BcgI restriction-modification protein for the transfer of one methyl group to DNA. Nucleic Acids Res., 41, 405-417.
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. 405-417
-
-
Smith, R.M.1
Jacklin, A.J.2
Marshall, J.J.3
Sobott, F.4
Halford, S.E.5
-
333
-
-
84871760662
-
Organization of the BcgI restriction-modification protein for the cleavage of eight phosphodiester bonds in DNA
-
Smith, R.M., Marshall, J.J., Jacklin, A.J., Retter, S.E., Halford, S.E., Sobott, F. (2013) Organization of the BcgI restriction-modification protein for the cleavage of eight phosphodiester bonds in DNA. Nucleic Acids Res., 41, 391-404.
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. 391-404
-
-
Smith, R.M.1
Marshall, J.J.2
Jacklin, A.J.3
Retter, S.E.4
Halford, S.E.5
Sobott, F.6
-
334
-
-
0027982791
-
Characterization of BcgI, a new kind of restriction-modification system
-
Kong, H., Roemer, S.E., Waite-Rees, P.A., Benner, J.S., Wilson, G.G., Nwankwo, D.O. (1994) Characterization of BcgI, a new kind of restriction-modification system. J. Biol. Chem., 269, 683-690.
-
(1994)
J. Biol. Chem.
, vol.269
, pp. 683-690
-
-
Kong, H.1
Roemer, S.E.2
Waite-Rees, P.A.3
Benner, J.S.4
Wilson, G.G.5
Nwankwo, D.O.6
-
335
-
-
0031959011
-
Does BcgI, a unique restriction endonuclease, require two recognition sites for cleavage? Biol
-
Kong, H., Smith, C.L. (1998) Does BcgI, a unique restriction endonuclease, require two recognition sites for cleavage? Biol. Chem., 379, 605-609.
-
(1998)
Chem.
, vol.379
, pp. 605-609
-
-
Kong, H.1
Smith, C.L.2
-
336
-
-
80053195544
-
Concerted action at eight phosphodiester bonds by the BcgI restriction endonuclease
-
Marshall, J.J., Smith, R.M., Ganguly, S., Halford, S.E. (2011) Concerted action at eight phosphodiester bonds by the BcgI restriction endonuclease. Nucleic Acids Res., 39, 7630-7640.
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. 7630-7640
-
-
Marshall, J.J.1
Smith, R.M.2
Ganguly, S.3
Halford, S.E.4
-
337
-
-
34547554093
-
Generation of DNA cleavage specificities of type II restriction endonucleases by reassortment of target recognition domains
-
Jurenaite-Urbanaviciene, S., Serksnaite, J., Kriukiene, E., Giedriene, J., Venclovas, C., Lubys, A. (2007) Generation of DNA cleavage specificities of type II restriction endonucleases by reassortment of target recognition domains. Proc. Natl. Acad. Sci. U.S.A., 104, 10358-10363.
-
(2007)
Proc. Natl. Acad. Sci. U.S.A.
, vol.104
, pp. 10358-10363
-
-
Jurenaite-Urbanaviciene, S.1
Serksnaite, J.2
Kriukiene, E.3
Giedriene, J.4
Venclovas, C.5
Lubys, A.6
-
338
-
-
84901297817
-
TstI, a Type II restriction-modification protein with DNA recognition, cleavage and methylation functions in a single polypeptide
-
Smith, R.M., Pernstich, C., Halford, S.E. (2014) TstI, a Type II restriction-modification protein with DNA recognition, cleavage and methylation functions in a single polypeptide. Nucleic Acids Res., 42, 5809-5822.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. 5809-5822
-
-
Smith, R.M.1
Pernstich, C.2
Halford, S.E.3
-
339
-
-
0026468485
-
Cloning and sequence analysis of the genes coding for Eco57I type IV restriction-modification enzymes
-
Janulaitis, A., Vaisvila, R., Timinskas, A., Klimasauskas, S., Butkus, V. (1992) Cloning and sequence analysis of the genes coding for Eco57I type IV restriction-modification enzymes. Nucleic Acids Res., 20, 6051-6056.
-
(1992)
Nucleic Acids Res.
, vol.20
, pp. 6051-6056
-
-
Janulaitis, A.1
Vaisvila, R.2
Timinskas, A.3
Klimasauskas, S.4
Butkus, V.5
-
340
-
-
0026613987
-
Purification and properties of the Eco57I restriction endonuclease and methylase-prototypes of a new class (type IV)
-
Janulaitis, A., Petrusyte, M., Maneliene, Z., Klimasauskas, S., Butkus, V. (1992) Purification and properties of the Eco57I restriction endonuclease and methylase-prototypes of a new class (type IV). Nucleic Acids Res., 20, 6043-6049.
-
(1992)
Nucleic Acids Res.
, vol.20
, pp. 6043-6049
-
-
Janulaitis, A.1
Petrusyte, M.2
Maneliene, Z.3
Klimasauskas, S.4
Butkus, V.5
-
341
-
-
84891850824
-
The role of the methyltransferase domain of bifunctional restriction enzyme RM.BpuSI in cleavage activity
-
Sarrade-Loucheur, A., Xu, S.Y., Chan, S.H. (2013) The role of the methyltransferase domain of bifunctional restriction enzyme RM.BpuSI in cleavage activity. PLoS One, 8, e80967.
-
(2013)
PLoS One
, vol.8
-
-
Sarrade-Loucheur, A.1
Xu, S.Y.2
Chan, S.H.3
-
342
-
-
0035941031
-
Characterization of AloI, a restriction-modification system of a new type
-
Cesnaviciene, E.E., Petrusyte, M.M., Kazlauskiene, R.R., Maneliene, Z., Timinskas, A., Lubys, A., Janulaitis, A. (2001) Characterization of AloI, a restriction-modification system of a new type. J. Mol. Biol., 314, 205-216.
-
(2001)
J. Mol. Biol.
, vol.314
, pp. 205-216
-
-
Cesnaviciene, E.E.1
Petrusyte, M.M.2
Kazlauskiene, R.R.3
Maneliene, Z.4
Timinskas, A.5
Lubys, A.6
Janulaitis, A.7
-
343
-
-
0033550203
-
The HaeIV restriction modification system of Haemophilus aegyptius is encoded by a single polypeptide
-
Piekarowicz, A., Golaszewska, M., Sunday, A.O., Siwinska, M., Stein, D.C. (1999) The HaeIV restriction modification system of Haemophilus aegyptius is encoded by a single polypeptide. J. Mol. Biol., 293, 1055-1065.
-
(1999)
J. Mol. Biol.
, vol.293
, pp. 1055-1065
-
-
Piekarowicz, A.1
Golaszewska, M.2
Sunday, A.O.3
Siwinska, M.4
Stein, D.C.5
-
344
-
-
80054053723
-
Characterization and crystal structure of the type IIG restriction endonuclease RM.BpuSI
-
Shen, B.W., Xu, D., Chan, S.H., Zheng, Y., Zhu, Z., Xu, S.Y., Stoddard, B.L. (2011) Characterization and crystal structure of the type IIG restriction endonuclease RM.BpuSI. Nucleic Acids Res., 39, 8223-8236.
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. 8223-8236
-
-
Shen, B.W.1
Xu, D.2
Chan, S.H.3
Zheng, Y.4
Zhu, Z.5
Xu, S.Y.6
Stoddard, B.L.7
-
345
-
-
80955135627
-
Crystallization and preliminary crystallographic analysis of the type IIL restriction enzyme MmeI in complex with DNA
-
Callahan, S.J., Morgan, R.D., Jain, R., Townson, S.A., Wilson, G.G., Roberts, R.J., Aggarwal, A.K. (2011) Crystallization and preliminary crystallographic analysis of the type IIL restriction enzyme MmeI in complex with DNA. Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun., 67, 1262-1265.
-
(2011)
Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun.
, vol.67
, pp. 1262-1265
-
-
Callahan, S.J.1
Morgan, R.D.2
Jain, R.3
Townson, S.A.4
Wilson, G.G.5
Roberts, R.J.6
Aggarwal, A.K.7
-
346
-
-
0032478624
-
Cooperative binding properties of restriction endonuclease EcoRII with DNA recognition sites
-
Reuter, M., Kupper, D., Meisel, A., Schroeder, C., Kruger, D.H. (1998) Cooperative binding properties of restriction endonuclease EcoRII with DNA recognition sites. J. Biol. Chem., 273, 8294-8300.
-
(1998)
J. Biol. Chem.
, vol.273
, pp. 8294-8300
-
-
Reuter, M.1
Kupper, D.2
Meisel, A.3
Schroeder, C.4
Kruger, D.H.5
-
347
-
-
34848814511
-
Direct visualization of the EcoRII-DNA triple synaptic complex by atomic force microscopy
-
Shlyakhtenko, L.S., Gilmore, J., Portillo, A., Tamulaitis, G., Siksnys, V., Lyubchenko, Y.L. (2007) Direct visualization of the EcoRII-DNA triple synaptic complex by atomic force microscopy. Biochemistry, 46, 11128-11136.
-
(2007)
Biochemistry
, vol.46
, pp. 11128-11136
-
-
Shlyakhtenko, L.S.1
Gilmore, J.2
Portillo, A.3
Tamulaitis, G.4
Siksnys, V.5
Lyubchenko, Y.L.6
-
348
-
-
33646119884
-
Simultaneous binding of three recognition sites is necessary for a concerted plasmid DNA cleavage by EcoRII restriction endonuclease
-
Tamulaitis, G., Sasnauskas, G., Mucke, M., Siksnys, V. (2006) Simultaneous binding of three recognition sites is necessary for a concerted plasmid DNA cleavage by EcoRII restriction endonuclease. J. Mol. Biol., 358, 406-419.
-
(2006)
J. Mol. Biol.
, vol.358
, pp. 406-419
-
-
Tamulaitis, G.1
Sasnauskas, G.2
Mucke, M.3
Siksnys, V.4
-
349
-
-
71049141657
-
Structural mechanisms for the 5'-CCWGG sequence recognition by the N- and C-terminal domains of EcoRII
-
Golovenko, D., Manakova, E., Tamulaitiene, G., Grazulis, S., Siksnys, V. (2009) Structural mechanisms for the 5'-CCWGG sequence recognition by the N- and C-terminal domains of EcoRII. Nucleic Acids Res., 37, 6613-6624.
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 6613-6624
-
-
Golovenko, D.1
Manakova, E.2
Tamulaitiene, G.3
Grazulis, S.4
Siksnys, V.5
-
350
-
-
0023711634
-
Abolition of DNA recognition site resistance to the restriction endonuclease EcoRII
-
Kruger, D.H., Barcak, G.J., Smith, H.O. (1988) Abolition of DNA recognition site resistance to the restriction endonuclease EcoRII. Biomed. Biochim. Acta, 47, K1-K5.
-
(1988)
Biomed. Biochim. Acta
, vol.47
-
-
Kruger, D.H.1
Barcak, G.J.2
Smith, H.O.3
-
351
-
-
0344011130
-
Diversity of type II restriction endonucleases that require two DNA recognition sites
-
Mucke, M., Kruger, D.H., Reuter, M. (2003) Diversity of type II restriction endonucleases that require two DNA recognition sites. Nucleic Acids Res., 31, 6079-6084.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 6079-6084
-
-
Mucke, M.1
Kruger, D.H.2
Reuter, M.3
-
352
-
-
0032584245
-
The domain organization of NaeI endonuclease: Separation of binding and catalysis
-
Colandene, J.D., Topal, M.D. (1998) The domain organization of NaeI endonuclease: separation of binding and catalysis. Proc. Natl. Acad. Sci. U.S.A., 95, 3531-3536.
-
(1998)
Proc. Natl. Acad. Sci. U.S.A.
, vol.95
, pp. 3531-3536
-
-
Colandene, J.D.1
Topal, M.D.2
-
353
-
-
0028968950
-
DNA topoisomerase and recombinase activities in Nae i restriction endonuclease
-
Jo, K., Topal, M.D. (1995) DNA topoisomerase and recombinase activities in Nae I restriction endonuclease. Science, 267, 1817-1820.
-
(1995)
Science
, vol.267
, pp. 1817-1820
-
-
Jo, K.1
Topal, M.D.2
-
354
-
-
0032524431
-
Step-wise DNA relaxation and decatenation by NaeI-43K
-
Jo, K., Topal, M.D. (1998) Step-wise DNA relaxation and decatenation by NaeI-43K. Nucleic Acids Res., 26, 2380-2384.
-
(1998)
Nucleic Acids Res.
, vol.26
, pp. 2380-2384
-
-
Jo, K.1
Topal, M.D.2
-
355
-
-
0025801446
-
NaeI endonuclease binding to pBR322 DNA induces looping
-
Topal, M.D., Thresher, R.J., Conrad, M., Griffith, J. (1991) NaeI endonuclease binding to pBR322 DNA induces looping. Biochemistry, 30, 2006-2010.
-
(1991)
Biochemistry
, vol.30
, pp. 2006-2010
-
-
Topal, M.D.1
Thresher, R.J.2
Conrad, M.3
Griffith, J.4
-
356
-
-
0026784663
-
Modified DNA fragments activate NaeI cleavage of refractory DNA sites
-
Conrad, M., Topal, M.D. (1992) Modified DNA fragments activate NaeI cleavage of refractory DNA sites. Nucleic Acids Res., 20, 5127-5130.
-
(1992)
Nucleic Acids Res.
, vol.20
, pp. 5127-5130
-
-
Conrad, M.1
Topal, M.D.2
-
357
-
-
14944374615
-
-
Pingoud, A (ed) Springer, Berlin
-
Siksnys, V., Grazulis, S., Huber, R. (2004) In: Pingoud, A (ed). Restriction Endonucleases. Springer, Berlin, pp. 63-93.
-
(2004)
Restriction Endonucleases
, pp. 63-93
-
-
Siksnys, V.1
Grazulis, S.2
Huber, R.3
-
358
-
-
0037040190
-
The type IIs restriction endonuclease BspMI is a tetramer that acts concertedly at two copies of an asymmetric DNA sequence
-
Gormley, N.A., Hillberg, A.L., Halford, S.E. (2002) The type IIs restriction endonuclease BspMI is a tetramer that acts concertedly at two copies of an asymmetric DNA sequence. J. Biol. Chem., 277, 4034-4041.
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 4034-4041
-
-
Gormley, N.A.1
Hillberg, A.L.2
Halford, S.E.3
-
359
-
-
28644435380
-
A view of consecutive binding events from structures of tetrameric endonuclease SfiI bound to DNA
-
Vanamee, E.S., Viadiu, H., Kucera, R., Dorner, L., Picone, S., Schildkraut, I., Aggarwal, A.K. (2005) A view of consecutive binding events from structures of tetrameric endonuclease SfiI bound to DNA. EMBO J., 24, 4198-4208.
-
(2005)
EMBO J.
, vol.24
, pp. 4198-4208
-
-
Vanamee, E.S.1
Viadiu, H.2
Kucera, R.3
Dorner, L.4
Picone, S.5
Schildkraut, I.6
Aggarwal, A.K.7
-
360
-
-
0033818703
-
Structure of the tetrameric restriction endonuclease NgoMIV in complex with cleaved DNA
-
Deibert, M., Grazulis, S., Sasnauskas, G., Siksnys, V., Huber, R. (2000) Structure of the tetrameric restriction endonuclease NgoMIV in complex with cleaved DNA. Nat. Struct. Biol., 7, 792-799.
-
(2000)
Nat. Struct. Biol.
, vol.7
, pp. 792-799
-
-
Deibert, M.1
Grazulis, S.2
Sasnauskas, G.3
Siksnys, V.4
Huber, R.5
-
361
-
-
0033520420
-
The Cfr10I restriction enzyme is functional as a tetramer
-
Siksnys, V., Skirgaila, R., Sasnauskas, G., Urbanke, C., Cherny, D., Grazulis, S., Huber, R. (1999) The Cfr10I restriction enzyme is functional as a tetramer. J. Mol. Biol., 291, 1105-1118.
-
(1999)
J. Mol. Biol.
, vol.291
, pp. 1105-1118
-
-
Siksnys, V.1
Skirgaila, R.2
Sasnauskas, G.3
Urbanke, C.4
Cherny, D.5
Grazulis, S.6
Huber, R.7
-
362
-
-
16244422033
-
Conversion of the tetrameric restriction endonuclease Bse634I into a dimer: Oligomeric structure-stability-function correlations
-
Zaremba, M., Sasnauskas, G., Urbanke, C., Siksnys, V. (2005) Conversion of the tetrameric restriction endonuclease Bse634I into a dimer: oligomeric structure-stability-function correlations. J. Mol. Biol., 348, 459-478.
-
(2005)
J. Mol. Biol.
, vol.348
, pp. 459-478
-
-
Zaremba, M.1
Sasnauskas, G.2
Urbanke, C.3
Siksnys, V.4
-
363
-
-
77953268817
-
A putative mobile genetic element carrying a novel type IIF restriction-modification system (PluTI)
-
Khan, Feroz, Furuta, Yoshikazu, Kawai, Mikihiko, H Kaminska, Katarzyna, Ishikawa, Ken, M Bujnicki, Janusz and Kobayashi, Ichizo (2010) A putative mobile genetic element carrying a novel type IIF restriction-modification system (PluTI). Nucleic acids Res. 38, 3019-3030.
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 3019-3030
-
-
Feroz, K.1
Yoshikazu, F.2
Mikihiko, K.3
Kaminska, H.4
Ishikawa, K.5
Janusz, K.6
Bujnicki, M.7
Ichizo, K.8
-
364
-
-
0028988946
-
The SfiI restriction endonuclease makes a four-strand DNA break at two copies of its recognition sequence
-
Wentzell, L.M., Nobbs, T.J., Halford, S.E. (1995) The SfiI restriction endonuclease makes a four-strand DNA break at two copies of its recognition sequence. J. Mol. Biol., 248, 581-595.
-
(1995)
J. Mol. Biol.
, vol.248
, pp. 581-595
-
-
Wentzell, L.M.1
Nobbs, T.J.2
Halford, S.E.3
-
365
-
-
0032555293
-
DNA looping by the SfiI restriction endonuclease
-
Wentzell, L.M., Halford, S.E. (1998) DNA looping by the SfiI restriction endonuclease. J. Mol. Biol., 281, 433-444.
-
(1998)
J. Mol. Biol.
, vol.281
, pp. 433-444
-
-
Wentzell, L.M.1
Halford, S.E.2
-
366
-
-
0033579567
-
Reactions of type II restriction endonucleases with 8-base pair recognition sites
-
Bilcock, D.T., Daniels, L.E., Bath, A.J., Halford, S.E. (1999) Reactions of type II restriction endonucleases with 8-base pair recognition sites. J. Biol. Chem., 274, 36379-36386.
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 36379-36386
-
-
Bilcock, D.T.1
Daniels, L.E.2
Bath, A.J.3
Halford, S.E.4
-
367
-
-
84885411813
-
Allosteric regulation of DNA cleavage and sequence-specificity through run-on oligomerization
-
Lyumkis, D., Talley, H., Stewart, A., Shah, S., Park, C.K., Tama, F., Potter, C.S., Carragher, B., Horton, N.C. (2013) Allosteric regulation of DNA cleavage and sequence-specificity through run-on oligomerization. Structure, 21, 1848-1858.
-
(2013)
Structure
, vol.21
, pp. 1848-1858
-
-
Lyumkis, D.1
Talley, H.2
Stewart, A.3
Shah, S.4
Park, C.K.5
Tama, F.6
Potter, C.S.7
Carragher, B.8
Horton, N.C.9
-
368
-
-
0037022273
-
Self-generated DNA termini relax the specificity of SgrAI restriction endonuclease
-
Bitinaite, J., Schildkraut, I. (2002) Self-generated DNA termini relax the specificity of SgrAI restriction endonuclease. Proc. Natl. Acad. Sci. U.S.A., 99, 1164-1169.
-
(2002)
Proc. Natl. Acad. Sci. U.S.A.
, vol.99
, pp. 1164-1169
-
-
Bitinaite, J.1
Schildkraut, I.2
-
369
-
-
78651299353
-
DNA synapsis through transient tetramerization triggers cleavage by Ecl18kI restriction enzyme
-
Zaremba, M., Owsicka, A., Tamulaitis, G., Sasnauskas, G., Shlyakhtenko, L.S., Lushnikov, A.Y., Lyubchenko, Y.L., Laurens, N., van den Broek, B., Wuite, G.J. et al. (2010) DNA synapsis through transient tetramerization triggers cleavage by Ecl18kI restriction enzyme. Nucleic Acids Res., 38, 7142-7154.
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 7142-7154
-
-
Zaremba, M.1
Owsicka, A.2
Tamulaitis, G.3
Sasnauskas, G.4
Shlyakhtenko, L.S.5
Lushnikov, A.Y.6
Lyubchenko, Y.L.7
Laurens, N.8
Van Den Broek, B.9
Wuite, G.J.10
-
370
-
-
34548267639
-
Type II restriction endonuclease R.Eco29kI is a member of the GIY-YIG nuclease superfamily
-
Ibryashkina, E.M., Zakharova, M.V., Baskunov, V.B., Bogdanova, E.S., Nagornykh, M.O., Den'mukhamedov, M.M., Melnik, B.S., Kolinski, A., Gront, D., Feder, M. et al. (2007) Type II restriction endonuclease R.Eco29kI is a member of the GIY-YIG nuclease superfamily. BMC Struct. Biol., 7, 48.
-
(2007)
BMC Struct. Biol.
, vol.7
, pp. 48
-
-
Ibryashkina, E.M.1
Zakharova, M.V.2
Baskunov, V.B.3
Bogdanova, E.S.4
Nagornykh, M.O.5
Den'mukhamedov, M.M.6
Melnik, B.S.7
Kolinski, A.8
Gront, D.9
Feder, M.10
-
371
-
-
0037579875
-
Isolation of a strain overproducing endonuclease Eco29kI: Purification and characterization of the homogeneous enzyme
-
Pertzev, A.V., Kravetz, A.N., Mayorov, S.G., Zakharova, M.V., Solonin, A.S. (1997) Isolation of a strain overproducing endonuclease Eco29kI: purification and characterization of the homogeneous enzyme. Biokhimiia, 62, 858-867.
-
(1997)
Biokhimiia
, vol.62
, pp. 858-867
-
-
Pertzev, A.V.1
Kravetz, A.N.2
Mayorov, S.G.3
Zakharova, M.V.4
Solonin, A.S.5
-
372
-
-
61349107249
-
Oligomeric structure diversity within the GIY-YIG nuclease family
-
Ibryashkina, E.M., Sasnauskas, G., Solonin, A.S., Zakharova, M.V., Siksnys, V. (2009) Oligomeric structure diversity within the GIY-YIG nuclease family. J. Mol. Biol., 387, 10-16.
-
(2009)
J. Mol. Biol.
, vol.387
, pp. 10-16
-
-
Ibryashkina, E.M.1
Sasnauskas, G.2
Solonin, A.S.3
Zakharova, M.V.4
Siksnys, V.5
-
373
-
-
33644851082
-
DNA nicking by HinP1I endonuclease: Bending, base flipping and minor groove expansion
-
Horton, J.R., Zhang, X., Maunus, R., Yang, Z., Wilson, G.G., Roberts, R.J., Cheng, X. (2006) DNA nicking by HinP1I endonuclease: bending, base flipping and minor groove expansion. Nucleic Acids Res., 34, 939-948.
-
(2006)
Nucleic Acids Res.
, vol.34
, pp. 939-948
-
-
Horton, J.R.1
Zhang, X.2
Maunus, R.3
Yang, Z.4
Wilson, G.G.5
Roberts, R.J.6
Cheng, X.7
-
374
-
-
69849088756
-
Rational engineering of type II restriction endonuclease DNA binding and cleavage specificity
-
Morgan, R.D., Luyten, Y.A. (2009) Rational engineering of type II restriction endonuclease DNA binding and cleavage specificity. Nucleic Acids Res., 37, 5222-5233.
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 5222-5233
-
-
Morgan, R.D.1
Luyten, Y.A.2
-
375
-
-
69849115232
-
The MmeI family: Type II restriction-modification enzymes that employ single-strand modification for host protection
-
Morgan, R.D., Dwinell, E.A., Bhatia, T.K., Lang, E.M., Luyten, Y.A. (2009) The MmeI family: type II restriction-modification enzymes that employ single-strand modification for host protection. Nucleic Acids Res., 37, 5208-5221.
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 5208-5221
-
-
Morgan, R.D.1
Dwinell, E.A.2
Bhatia, T.K.3
Lang, E.M.4
Luyten, Y.A.5
-
376
-
-
56649117672
-
MmeI: A minimal Type II restriction-modification system that only modifies one DNA strand for host protection
-
Morgan, R.D., Bhatia, T.K., Lovasco, L., Davis, T.B. (2008) MmeI: a minimal Type II restriction-modification system that only modifies one DNA strand for host protection. Nucleic Acids Res., 36, 6558-6570.
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 6558-6570
-
-
Morgan, R.D.1
Bhatia, T.K.2
Lovasco, L.3
Davis, T.B.4
-
377
-
-
84855301797
-
Structure and operation of the DNA-translocating type i DNA restriction enzymes
-
Kennaway, C.K., Taylor, J.E., Song, C.F., Potrzebowski, W., Nicholson, W., White, J.H., Swiderska, A., Obarska-Kosinska, A., Callow, P., Cooper, L.P. et al. (2012) Structure and operation of the DNA-translocating type I DNA restriction enzymes. Genes Dev., 26, 92-104.
-
(2012)
Genes Dev.
, vol.26
, pp. 92-104
-
-
Kennaway, C.K.1
Taylor, J.E.2
Song, C.F.3
Potrzebowski, W.4
Nicholson, W.5
White, J.H.6
Swiderska, A.7
Obarska-Kosinska, A.8
Callow, P.9
Cooper, L.P.10
-
378
-
-
34249660654
-
An em view of the foki synaptic complex by single particle analysis
-
Vanamee, E.S., Berriman, J., Aggarwal, A.K. (2007) An EM view of the foki synaptic complex by single particle analysis. J. Mol. Biol., 370, 207-212.
-
(2007)
J. Mol. Biol.
, vol.370
, pp. 207-212
-
-
Vanamee, E.S.1
Berriman, J.2
Aggarwal, A.K.3
-
379
-
-
58149347788
-
Functional analysis of MmeI from methanol utilizer methylophilus methylotrophus, a subtype IIC restriction-modification enzyme related to Type i enzymes
-
Nakonieczna, J., Kaczorowski, T., Obarska-Kosinska, A., Bujnicki, J.M. (2009) Functional analysis of MmeI from methanol utilizer methylophilus methylotrophus, a subtype IIC restriction-modification enzyme related to Type I enzymes. Appl. Environ. Microbiol., 75, 212-223.
-
(2009)
Appl. Environ. Microbiol.
, vol.75
, pp. 212-223
-
-
Nakonieczna, J.1
Kaczorowski, T.2
Obarska-Kosinska, A.3
Bujnicki, J.M.4
-
380
-
-
0038268065
-
Purification and characterization of a novel DNA methyltransferase, M.AhdI
-
Marks, P., McGeehan, J., Wilson, G., Errington, N., Kneale, G. (2003) Purification and characterization of a novel DNA methyltransferase, M.AhdI. Nucleic Acids Res., 31, 2803-2810.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 2803-2810
-
-
Marks, P.1
McGeehan, J.2
Wilson, G.3
Errington, N.4
Kneale, G.5
-
381
-
-
0016745114
-
A deoxyribonuclease of Diplococcus pneumoniae specific for methylated DNA
-
Lacks, S., Greenberg, B. (1975) A deoxyribonuclease of Diplococcus pneumoniae specific for methylated DNA. J. Biol. Chem., 250, 4060-4066.
-
(1975)
J. Biol. Chem.
, vol.250
, pp. 4060-4066
-
-
Lacks, S.1
Greenberg, B.2
-
382
-
-
0017411721
-
Complementary specificity of restriction endonucleases of Diplococcus pneumoniae with respect to DNA methylation
-
Lacks, S., Greenberg, B. (1977) Complementary specificity of restriction endonucleases of Diplococcus pneumoniae with respect to DNA methylation. J. Mol. Biol., 114, 153-168.
-
(1977)
J. Mol. Biol.
, vol.114
, pp. 153-168
-
-
Lacks, S.1
Greenberg, B.2
-
383
-
-
3042785825
-
One recognition sequence, seven restriction enzymes, five reaction mechanisms
-
Gowers, D.M., Bellamy, S.R.W., Halford, S.E. (2004) One recognition sequence, seven restriction enzymes, five reaction mechanisms. Nucleic Acids Res., 32, 3469-3479.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 3469-3479
-
-
Gowers, D.M.1
Bellamy, S.R.W.2
Halford, S.E.3
-
384
-
-
0025797325
-
Class-IIS restriction enzymes-a review
-
Szybalski, W., Kim, S.C., Hasan, N., Podhajska, A.J. (1991) Class-IIS restriction enzymes-a review. Gene, 100, 13-26.
-
(1991)
Gene
, vol.100
, pp. 13-26
-
-
Szybalski, W.1
Kim, S.C.2
Hasan, N.3
Podhajska, A.J.4
-
385
-
-
0024294391
-
Cleaving DNA at any predetermined site with adapter-primers and class-IIS restriction enzymes
-
Kim, S.C., Podhajska, A.J., Szybalski, W. (1988) Cleaving DNA at any predetermined site with adapter-primers and class-IIS restriction enzymes. Science, 240, 504-506.
-
(1988)
Science
, vol.240
, pp. 504-506
-
-
Kim, S.C.1
Podhajska, A.J.2
Szybalski, W.3
-
386
-
-
0022914668
-
A novel multistep method for generating precise unidirectional deletions using BspMI, a class-IIS restriction enzyme
-
Hasan, N., Kim, S.C., Podhajska, A.J., Szybalski, W. (1986) A novel multistep method for generating precise unidirectional deletions using BspMI, a class-IIS restriction enzyme. Gene, 50, 55-62.
-
(1986)
Gene
, vol.50
, pp. 55-62
-
-
Hasan, N.1
Kim, S.C.2
Podhajska, A.J.3
Szybalski, W.4
-
387
-
-
0019768975
-
New restriction endonucleases from Flavobacterium okeanokoites (FokI) and Micrococcus luteus (MluI)
-
Sugisaki, H., Kanazawa, S. (1981) New restriction endonucleases from Flavobacterium okeanokoites (FokI) and Micrococcus luteus (MluI). Gene, 16, 73-78.
-
(1981)
Gene
, vol.16
, pp. 73-78
-
-
Sugisaki, H.1
Kanazawa, S.2
-
388
-
-
0032876974
-
Chimeric restriction enzymes: What is next? Biol
-
Chandrasegaran, S., Smith, J. (1999) Chimeric restriction enzymes: what is next? Biol. Chem., 380, 841-848.
-
(1999)
Chem.
, vol.380
, pp. 841-848
-
-
Chandrasegaran, S.1
Smith, J.2
-
389
-
-
0026511244
-
Functional domains in FokI restriction endonuclease
-
Li, L., Wu, L.P., Chandrasegaran, S. (1992) Functional domains in FokI restriction endonuclease. Proc. Natl. Acad. Sci. U.S.A., 89, 4275-4279.
-
(1992)
Proc. Natl. Acad. Sci. U.S.A.
, vol.89
, pp. 4275-4279
-
-
Li, L.1
Wu, L.P.2
Chandrasegaran, S.3
-
390
-
-
36148946420
-
The restriction endonuclease R.NmeDI from Neisseria meningitidis that recognizes a palindromic sequence and cuts the DNA on both sides of the recognition sequence
-
Kwiatek, A., Piekarowicz, A. (2007) The restriction endonuclease R.NmeDI from Neisseria meningitidis that recognizes a palindromic sequence and cuts the DNA on both sides of the recognition sequence. Nucleic Acids Res., 35, 6539-6546.
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. 6539-6546
-
-
Kwiatek, A.1
Piekarowicz, A.2
-
391
-
-
0024544014
-
The FokI restriction-modification system. II. Presence of two domains in FokI methylase responsible for modification of different DNA strands
-
Sugisaki, H., Kita, K., Takanami, M. (1989) The FokI restriction- modification system. II. Presence of two domains in FokI methylase responsible for modification of different DNA strands. J. Biol. Chem., 264, 5757-5761.
-
(1989)
J. Biol. Chem.
, vol.264
, pp. 5757-5761
-
-
Sugisaki, H.1
Kita, K.2
Takanami, M.3
-
392
-
-
0024440974
-
Nucleotide sequence of the FokI restriction-modification system: Separate strand-specificity domains in the methyltransferase
-
Looney, M.C., Moran, L.S., Jack, W.E., Feehery, G.R., Benner, J.S., Slatko, B.E., Wilson, G.G. (1989) Nucleotide sequence of the FokI restriction-modification system: separate strand-specificity domains in the methyltransferase. Gene, 80, 193-208.
-
(1989)
Gene
, vol.80
, pp. 193-208
-
-
Looney, M.C.1
Moran, L.S.2
Jack, W.E.3
Feehery, G.R.4
Benner, J.S.5
Slatko, B.E.6
Wilson, G.G.7
-
393
-
-
28644435380
-
A view of consecutive binding events from structures of tetrameric endonuclease SfiI bound to DNA
-
Vanamee, E.S., Viadiu, H., Kucera, R., Dorner, L., Picone, S., Schildkraut, I., Aggarwal, A.K. (2005) A view of consecutive binding events from structures of tetrameric endonuclease SfiI bound to DNA. EMBO J., 24, 4198-4208.
-
(2005)
EMBO J.
, vol.24
, pp. 4198-4208
-
-
Vanamee, E.S.1
Viadiu, H.2
Kucera, R.3
Dorner, L.4
Picone, S.5
Schildkraut, I.6
Aggarwal, A.K.7
-
394
-
-
33645522837
-
Protein assembly and DNA looping by the FokI restriction endonuclease
-
Catto, L.E., Ganguly, S., Milsom, S.E., Welsh, A.J., Halford, S.E. (2006) Protein assembly and DNA looping by the FokI restriction endonuclease. Nucleic Acids Res., 34, 1711-1720.
-
(2006)
Nucleic Acids Res.
, vol.34
, pp. 1711-1720
-
-
Catto, L.E.1
Ganguly, S.2
Milsom, S.E.3
Welsh, A.J.4
Halford, S.E.5
-
395
-
-
79953219494
-
The reaction mechanism of FokI excludes the possibility of targeting zinc finger nucleases to unique DNA sites
-
Halford, S.E., Catto, L.E., Pernstich, C., Rusling, D.A., Sanders, K.L. (2011) The reaction mechanism of FokI excludes the possibility of targeting zinc finger nucleases to unique DNA sites. Biochem. Soc. Trans., 39, 584-588.
-
(2011)
Biochem. Soc. Trans.
, vol.39
, pp. 584-588
-
-
Halford, S.E.1
Catto, L.E.2
Pernstich, C.3
Rusling, D.A.4
Sanders, K.L.5
-
396
-
-
0035946911
-
FokI requires two specific DNA sites for cleavage
-
Vanamee, E.S., Santagata, S., Aggarwal, A.K. (2001) FokI requires two specific DNA sites for cleavage. J. Mol. Biol., 309, 69-78.
-
(2001)
J. Mol. Biol.
, vol.309
, pp. 69-78
-
-
Vanamee, E.S.1
Santagata, S.2
Aggarwal, A.K.3
-
397
-
-
41849085964
-
Dynamics and consequences of DNA looping by the FokI restriction endonuclease
-
Catto, L.E., Bellamy, S.R., Retter, S.E., Halford, S.E. (2008) Dynamics and consequences of DNA looping by the FokI restriction endonuclease. Nucleic Acids Res., 36, 2073-2081.
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 2073-2081
-
-
Catto, L.E.1
Bellamy, S.R.2
Retter, S.E.3
Halford, S.E.4
-
398
-
-
84862178413
-
DNA looping by FokI: The impact of twisting and bending rigidity on protein-induced looping dynamics
-
Laurens, N., Rusling, D.A., Pernstich, C., Brouwer, I., Halford, S.E., Wuite, G.J. (2012) DNA looping by FokI: the impact of twisting and bending rigidity on protein-induced looping dynamics. Nucleic Acids Res., 40, 4988-4997.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 4988-4997
-
-
Laurens, N.1
Rusling, D.A.2
Pernstich, C.3
Brouwer, I.4
Halford, S.E.5
Wuite, G.J.6
-
399
-
-
33746824311
-
Tension-dependent DNA cleavage by restriction endonucleases: Two-site enzymes are "switched off" at low force
-
Gemmen, G.J., Millin, R., Smith, D.E. (2006) Tension-dependent DNA cleavage by restriction endonucleases: two-site enzymes are "switched off" at low force. Proc. Natl. Acad. Sci. U.S.A., 103, 11555-11560.
-
(2006)
Proc. Natl. Acad. Sci. U.S.A.
, vol.103
, pp. 11555-11560
-
-
Gemmen, G.J.1
Millin, R.2
Smith, D.E.3
-
400
-
-
14244254599
-
Analysis of Type II restriction endonucleases that interact with two recognition sites
-
Welsh, A.J., Halford, S.E., Scott, D.J. (2004) Analysis of Type II restriction endonucleases that interact with two recognition sites. Nucleic Acids Mol. Biol., 14, 297-317.
-
(2004)
Nucleic Acids Mol. Biol.
, vol.14
, pp. 297-317
-
-
Welsh, A.J.1
Halford, S.E.2
Scott, D.J.3
-
401
-
-
0035902832
-
DNA cleavage reactions by type II restriction enzymes that require two copies of their recognition sites
-
Embleton, M.L., Siksnys, V., Halford, S.E. (2001) DNA cleavage reactions by type II restriction enzymes that require two copies of their recognition sites. J. Mol. Biol., 311, 503-514.
-
(2001)
J. Mol. Biol.
, vol.311
, pp. 503-514
-
-
Embleton, M.L.1
Siksnys, V.2
Halford, S.E.3
-
402
-
-
84862178378
-
DNA looping by FokI: The impact of synapse geometry on loop topology at varied site orientations
-
Rusling, D.A., Laurens, N., Pernstich, C., Wuite, G.J., Halford, S.E. (2012) DNA looping by FokI: the impact of synapse geometry on loop topology at varied site orientations. Nucleic Acids Res., 40, 4977-4987.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 4977-4987
-
-
Rusling, D.A.1
Laurens, N.2
Pernstich, C.3
Wuite, G.J.4
Halford, S.E.5
-
403
-
-
65549139378
-
Targeting individual subunits of the FokI restriction endonuclease to specific DNA strands
-
Sanders, K.L., Catto, L.E., Bellamy, S.R., Halford, S.E. (2009) Targeting individual subunits of the FokI restriction endonuclease to specific DNA strands. Nucleic Acids Res., 37, 2105-2115.
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 2105-2115
-
-
Sanders, K.L.1
Catto, L.E.2
Bellamy, S.R.3
Halford, S.E.4
-
404
-
-
0025120026
-
II-Q restriction endonucleases-new class of type II enzymes
-
Degtyarev, S., Rechkunova, N.I., Kolyhalov, A.A., Dedkov, V.S., Zhilkin, P.A. (1990) II-Q restriction endonucleases-new class of type II enzymes. Nucleic Acids Res., 18, 5807-5810.
-
(1990)
Nucleic Acids Res.
, vol.18
, pp. 5807-5810
-
-
Degtyarev, S.1
Rechkunova, N.I.2
Kolyhalov, A.A.3
Dedkov, V.S.4
Zhilkin, P.A.5
-
405
-
-
1842296486
-
Bpu10I restriction endonuclease is composed of two nonidentical subunits
-
Stankevicius, K., Lubys, A., Timinskas, A., Janulaitis, A. (1996) Bpu10I restriction endonuclease is composed of two nonidentical subunits. Biologija, 2, 51-53.
-
(1996)
Biologija
, vol.2
, pp. 51-53
-
-
Stankevicius, K.1
Lubys, A.2
Timinskas, A.3
Janulaitis, A.4
-
406
-
-
34547888748
-
Discovery of natural nicking endonucleases Nb.BsrDI and Nb.BtsI and engineering of top-strand nicking variants from BsrDI and BtsI
-
Xu, S.Y., Zhu, Z., Zhang, P., Chan, S.H., Samuelson, J.C., Xiao, J., Ingalls, D., Wilson, G.G. (2007) Discovery of natural nicking endonucleases Nb.BsrDI and Nb.BtsI and engineering of top-strand nicking variants from BsrDI and BtsI. Nucleic Acids Res., 35, 4608-4618.
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. 4608-4618
-
-
Xu, S.Y.1
Zhu, Z.2
Zhang, P.3
Chan, S.H.4
Samuelson, J.C.5
Xiao, J.6
Ingalls, D.7
Wilson, G.G.8
-
407
-
-
77950364053
-
Engineering Nt.BtsCI and Nb.BtsCI nicking enzymes and applications in generating long overhangs
-
Too, P.H., Zhu, Z., Chan, S.H., Xu, S.Y. (2010) Engineering Nt.BtsCI and Nb.BtsCI nicking enzymes and applications in generating long overhangs. Nucleic Acids Res., 38, 1294-1303.
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 1294-1303
-
-
Too, P.H.1
Zhu, Z.2
Chan, S.H.3
Xu, S.Y.4
-
408
-
-
78651319695
-
Natural and engineered nicking endonucleases-from cleavage mechanism to engineering of strand-specificity
-
Chan, S.H., Stoddard, B.L., Xu, S.Y. (2011) Natural and engineered nicking endonucleases-from cleavage mechanism to engineering of strand-specificity. Nucleic Acids Res., 39, 1-18.
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. 1-18
-
-
Chan, S.H.1
Stoddard, B.L.2
Xu, S.Y.3
-
409
-
-
0032708112
-
A novel endonuclease mechanism directly visualized for I-PpoI.Nat
-
Galburt, E.A., Chevalier, B., Tang, W., Jurica, M.S., Flick, K.E., Monnat, R., Stoddard, B.L. (1999) A novel endonuclease mechanism directly visualized for I-PpoI.Nat. Struct. Biol., 6, 1096-1099.
-
(1999)
Struct. Biol.
, vol.6
, pp. 1096-1099
-
-
Galburt, E.A.1
Chevalier, B.2
Tang, W.3
Jurica, M.S.4
Flick, K.E.5
Monnat, R.6
Stoddard, B.L.7
-
410
-
-
0032930314
-
A similar active site for non-specific and specific endonucleases.Nat
-
Friedhoff, P., Franke, I., Meiss, G., Wende, W., Krause, K.L., Pingoud, A. (1999) A similar active site for non-specific and specific endonucleases.Nat. Struct. Biol., 6, 112-113.
-
(1999)
Struct. Biol.
, vol.6
, pp. 112-113
-
-
Friedhoff, P.1
Franke, I.2
Meiss, G.3
Wende, W.4
Krause, K.L.5
Pingoud, A.6
-
411
-
-
33644756595
-
Homing endonuclease structure and function
-
Stoddard, B.L. (2005) Homing endonuclease structure and function. Q. Rev. Biophys., 38, 49-95.
-
(2005)
Q. Rev. Biophys.
, vol.38
, pp. 49-95
-
-
Stoddard, B.L.1
-
412
-
-
0035883725
-
The structural basis of damaged DNA recognition and endonucleolytic cleavage for very short patch repair endonuclease
-
Tsutakawa, S.E., Morikawa, K. (2001) The structural basis of damaged DNA recognition and endonucleolytic cleavage for very short patch repair endonuclease. Nucleic Acids Res., 29, 3775-3783.
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 3775-3783
-
-
Tsutakawa, S.E.1
Morikawa, K.2
-
413
-
-
33750502067
-
Domain organization and metal ion requirement of the Type IIS restriction endonuclease MnlI
-
Kriukiene, E. (2006) Domain organization and metal ion requirement of the Type IIS restriction endonuclease MnlI. FEBS Lett., 580, 6115-6122.
-
(2006)
FEBS Lett.
, vol.580
, pp. 6115-6122
-
-
Kriukiene, E.1
-
414
-
-
77949345175
-
Cofactor requirement of HpyAV restriction endonuclease
-
Chan, S.H., Opitz, L., Higgins, L., O'Loane, D., Xu, S.Y. (2010) Cofactor requirement of HpyAV restriction endonuclease. PLoS One, 5, e9071.
-
(2010)
PLoS One
, vol.5
-
-
Chan, S.H.1
Opitz, L.2
Higgins, L.3
O'loane, D.4
Xu, S.Y.5
-
415
-
-
34250858251
-
Mutability of an HNH nuclease imidazole general base and exchange of a deprotonation mechanism
-
Eastberg, J.H., Eklund, J., Monnat, R., Stoddard, B.L. (2007) Mutability of an HNH nuclease imidazole general base and exchange of a deprotonation mechanism. Biochemistry, 46, 7215-7225.
-
(2007)
Biochemistry
, vol.46
, pp. 7215-7225
-
-
Eastberg, J.H.1
Eklund, J.2
Monnat, R.3
Stoddard, B.L.4
-
416
-
-
84899007278
-
Structural insight into the specificity of the B3 DNA-binding domains provided by the co-crystal structure of the C-terminal fragment of BfiI restriction enzyme
-
Golovenko, D., Manakova, E., Zakrys, L., Zaremba, M., Sasnauskas, G., Grazulis, S., Siksnys, V. (2014) Structural insight into the specificity of the B3 DNA-binding domains provided by the co-crystal structure of the C-terminal fragment of BfiI restriction enzyme. Nucleic Acids Res., 42, 4113-4122.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. 4113-4122
-
-
Golovenko, D.1
Manakova, E.2
Zakrys, L.3
Zaremba, M.4
Sasnauskas, G.5
Grazulis, S.6
Siksnys, V.7
-
417
-
-
27644485012
-
-
Grazulis, S., Manakova, E., Roessle, M., Bochtler, M., Tamulaitiene, G., Huber, R., Siksnys, V. (2005) Structure of the metal-independent restriction enzyme BfiI reveals fusion of a specific DNA-binding domain with a nonspecific nuclease. Proc. Natl. Acad. Sci. U.S.A., 102, 15797-15802.
-
(2005)
Structure of the Metal-independent Restriction Enzyme BfiI Reveals Fusion of A Specific DNA-binding Domain with A Nonspecific Nuclease. Proc. Natl. Acad. Sci. U.S.A.
, vol.102
, pp. 15797-15802
-
-
Grazulis, S.1
Manakova, E.2
Roessle, M.3
Bochtler, M.4
Tamulaitiene, G.5
Huber, R.6
Siksnys, V.7
-
418
-
-
0345869711
-
Generation of the BfiI restriction endonuclease from the fusion of a DNA recognition domain to a non-specific nuclease from the phospholipase D superfamily
-
Zaremba, M., Urbanke, C., Halford, S.E., Siksnys, V. (2004) Generation of the BfiI restriction endonuclease from the fusion of a DNA recognition domain to a non-specific nuclease from the phospholipase D superfamily. J. Mol. Biol., 336, 81-92.
-
(2004)
J. Mol. Biol.
, vol.336
, pp. 81-92
-
-
Zaremba, M.1
Urbanke, C.2
Halford, S.E.3
Siksnys, V.4
-
419
-
-
0037470599
-
The metal-independent type IIS restriction enzyme BfiI is a dimer that binds two DNA sites but has only one catalytic centre
-
Lagunavicius, A., Sasnauskas, G., Halford, S.E., Siksnys, V. (2003) The metal-independent type IIS restriction enzyme BfiI is a dimer that binds two DNA sites but has only one catalytic centre. J. Mol. Biol., 326, 1051-1064.
-
(2003)
J. Mol. Biol.
, vol.326
, pp. 1051-1064
-
-
Lagunavicius, A.1
Sasnauskas, G.2
Halford, S.E.3
Siksnys, V.4
-
420
-
-
27144543021
-
Discovery of a novel restriction endonuclease by genome comparison and application of a wheat-germ-based cell-free translation assay: PabI (5'GTA/C) from the hyperthermophilic archaeon Pyrococcus abyssi
-
Ishikawa, K., Watanabe, M., Kuroita, T., Uchiyama, I., Bujnicki, J., Kawakami, B., Tanokura, M., Kobayashi, I. (2005) Discovery of a novel restriction endonuclease by genome comparison and application of a wheat-germ-based cell-free translation assay: PabI (5'GTA/C) from the hyperthermophilic archaeon Pyrococcus abyssi. Nucleic Acids Res., 3, e112.
-
(2005)
Nucleic Acids Res.
, vol.3
-
-
Ishikawa, K.1
Watanabe, M.2
Kuroita, T.3
Uchiyama, I.4
Bujnicki, J.5
Kawakami, B.6
Tanokura, M.7
Kobayashi, I.8
-
421
-
-
33747367212
-
Hyperthermophilic DNA methyltransferase M.Pabl from the archaeon Pyrococcus abyssi
-
Watanabe, M., Yuzawa, H., Handa, N., Kobayashi, I. (2006) Hyperthermophilic DNA methyltransferase M.Pabl from the archaeon Pyrococcus abyssi. Appl. Environ. Microbiol., 72, 5367-5375.
-
(2006)
Appl. Environ. Microbiol.
, vol.72
, pp. 5367-5375
-
-
Watanabe, M.1
Yuzawa, H.2
Handa, N.3
Kobayashi, I.4
-
422
-
-
34247886142
-
Novel protein fold discovered in the PabI family of restriction enzymes
-
Miyazono, K., Watanabe, M., Kosinski, J., Ishikawa, K., Kamo, M., Sawasaki, T., Nagata, K., Bujnicki, J.M., Endo, Y., Tanokura, M. et al. (2007) Novel protein fold discovered in the PabI family of restriction enzymes. Nucleic Acids Res., 35, 1908-1918.
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. 1908-1918
-
-
Miyazono, K.1
Watanabe, M.2
Kosinski, J.3
Ishikawa, K.4
Kamo, M.5
Sawasaki, T.6
Nagata, K.7
Bujnicki, J.M.8
Endo, Y.9
Tanokura, M.10
-
423
-
-
84893121162
-
A sequence-specific DNA glycosylase mediates restriction-modification in Pyrococcus abyssi
-
Miyazono, K., Furuta, Y., Watanabe-Matsui, M., Miyakawa, T., Ito, T., Kobayashi, I., Tanokura, M. (2014) A sequence-specific DNA glycosylase mediates restriction-modification in Pyrococcus abyssi. Nat. Commun., 5, 3178.
-
(2014)
Nat. Commun.
, vol.5
, pp. 3178
-
-
Miyazono, K.1
Furuta, Y.2
Watanabe-Matsui, M.3
Miyakawa, T.4
Ito, T.5
Kobayashi, I.6
Tanokura, M.7
-
424
-
-
57149101710
-
The Helicobacter pylori HpyAXII restriction-modification system limits exogenous DNA uptake by targeting GTAC sites but shows asymmetric conservation of the DNA methyltransferase and restriction endonuclease components
-
Humbert, O., Salama, N.R. (2008) The Helicobacter pylori HpyAXII restriction-modification system limits exogenous DNA uptake by targeting GTAC sites but shows asymmetric conservation of the DNA methyltransferase and restriction endonuclease components. Nucleic Acids Res., 36, 6893-6906.
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 6893-6906
-
-
Humbert, O.1
Salama, N.R.2
-
425
-
-
0035151431
-
Grouping together highly diverged PD-(D/E)XK nucleases and identification of novel superfamily members using structure-guided alignment of sequence profiles
-
Bujnicki, J.M., Rychlewski, L. (2001) Grouping together highly diverged PD-(D/E)XK nucleases and identification of novel superfamily members using structure-guided alignment of sequence profiles. J. Mol. Microbiol. Biotechnol., 3, 69-72.
-
(2001)
J. Mol. Microbiol. Biotechnol.
, vol.3
, pp. 69-72
-
-
Bujnicki, J.M.1
Rychlewski, L.2
-
426
-
-
79952318529
-
Identification of new homologs of PD-(D/E)XK nucleases by support vector machines trained on data derived from profile-profile alignments
-
Laganeckas, M., Margelevicius, M., Venclovas, C. (2011) Identification of new homologs of PD-(D/E)XK nucleases by support vector machines trained on data derived from profile-profile alignments. Nucleic Acids Res., 39, 1187-1196.
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. 1187-1196
-
-
Laganeckas, M.1
Margelevicius, M.2
Venclovas, C.3
-
427
-
-
33751098253
-
Identification of a new subfamily of HNH nucleases and experimental characterization of a representative member, HphI restriction endonuclease
-
Cymerman, I.A., Obarska, A., Skowronek, K.J., Lubys, A., Bujnicki, J.M. (2006) Identification of a new subfamily of HNH nucleases and experimental characterization of a representative member, HphI restriction endonuclease. Proteins, 65, 867-876.
-
(2006)
Proteins
, vol.65
, pp. 867-876
-
-
Cymerman, I.A.1
Obarska, A.2
Skowronek, K.J.3
Lubys, A.4
Bujnicki, J.M.5
-
428
-
-
33748867012
-
Phylogenomic analysis of the GIY-YIG nuclease superfamily
-
Dunin-Horkawicz, S., Feder, M., Bujnicki, J.M. (2006) Phylogenomic analysis of the GIY-YIG nuclease superfamily. BMC Genomics, 7, 98.
-
(2006)
BMC Genomics
, vol.7
, pp. 98
-
-
Dunin-Horkawicz, S.1
Feder, M.2
Bujnicki, J.M.3
-
429
-
-
0035393302
-
Amino acid-base interactions: A three-dimensional analysis of protein-DNA interactions at an atomic level
-
Luscombe, N.M., Laskowski, R.A., Thornton, J.M. (2001) Amino acid-base interactions: a three-dimensional analysis of protein-DNA interactions at an atomic level. Nucleic Acids Res., 29, 2860-2874.
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 2860-2874
-
-
Luscombe, N.M.1
Laskowski, R.A.2
Thornton, J.M.3
-
430
-
-
0034026486
-
On the possibilities and limitations of rational protein design to expand the specificity of restriction enzymes: A case study employing EcoRV as the target
-
Lanio, T., Jeltsch, A., Pingoud, A. (2000) On the possibilities and limitations of rational protein design to expand the specificity of restriction enzymes: a case study employing EcoRV as the target. Protein Eng., 13, 275-281.
-
(2000)
Protein Eng.
, vol.13
, pp. 275-281
-
-
Lanio, T.1
Jeltsch, A.2
Pingoud, A.3
-
431
-
-
80054103714
-
Generation of DNA nanocircles containing mismatched bases
-
Xiao, Y., Jung, C., Marx, A.D., Winkler, I., Wyman, C., Lebbink, J.H., Friedhoff, P., Cristovao, M. (2011) Generation of DNA nanocircles containing mismatched bases. Biotechniques, 51, 259-262, 264-255.
-
(2011)
Biotechniques
, vol.51
, Issue.259-262
, pp. 264-255
-
-
Xiao, Y.1
Jung, C.2
Marx, A.D.3
Winkler, I.4
Wyman, C.5
Lebbink, J.H.6
Friedhoff, P.7
Cristovao, M.8
-
432
-
-
33746224342
-
Nickase and a protein encoded by an open reading frame downstream from the nickase BspD6I gene form a restriction endonuclease complex
-
Yunusova, A.K., Rogulin, E.A., Artyukh, R.I., Zheleznaya, L.A., Matvienko, N.I. (2006) Nickase and a protein encoded by an open reading frame downstream from the nickase BspD6I gene form a restriction endonuclease complex. Biokhimiia, 71, 1002-1008.
-
(2006)
Biokhimiia
, vol.71
, pp. 1002-1008
-
-
Yunusova, A.K.1
Rogulin, E.A.2
Artyukh, R.I.3
Zheleznaya, L.A.4
Matvienko, N.I.5
-
433
-
-
0035875116
-
The nicking endonuclease N.BstNBI is closely related to Type IIs restriction endonucleases MlyI and PleI
-
Higgins, L.S., Besnier, C., Kong, H. (2001) The nicking endonuclease N.BstNBI is closely related to Type IIs restriction endonucleases MlyI and PleI. Nucleic Acids Res., 29, 2492-2501.
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 2492-2501
-
-
Higgins, L.S.1
Besnier, C.2
Kong, H.3
-
434
-
-
0035946978
-
Covalent joining of the subunits of a homodimeric type II restriction endonuclease: Single-chain PvuII endonuclease
-
Simoncsits, A., Tjornhammar, M.L., Rasko, T., Kiss, A., Pongor, S. (2001) Covalent joining of the subunits of a homodimeric type II restriction endonuclease: single-chain PvuII endonuclease. J. Mol. Biol., 309, 89-97.
-
(2001)
J. Mol. Biol.
, vol.309
, pp. 89-97
-
-
Simoncsits, A.1
Tjornhammar, M.L.2
Rasko, T.3
Kiss, A.4
Pongor, S.5
-
435
-
-
0029994359
-
Introduction of asymmetry in the naturally symmetric restriction endonuclease EcoRV to investigate intersubunit communication in the homodimeric protein
-
Stahl, F., Wende, W., Jeltsch, A., Pingoud, A. (1996) Introduction of asymmetry in the naturally symmetric restriction endonuclease EcoRV to investigate intersubunit communication in the homodimeric protein. Proc. Natl. Acad. Sci. U.S.A., 93, 6175-6180.
-
(1996)
Proc. Natl. Acad. Sci. U.S.A.
, vol.93
, pp. 6175-6180
-
-
Stahl, F.1
Wende, W.2
Jeltsch, A.3
Pingoud, A.4
-
436
-
-
0029858708
-
The production and characterization of artificial heterodimers of the restriction endonuclease EcoRV
-
Wende, W., Stahl, F., Pingoud, A. (1996) The production and characterization of artificial heterodimers of the restriction endonuclease EcoRV. Biol. Chem. Hoppe Seyler, 377, 625-632.
-
(1996)
Biol. Chem. Hoppe Seyler
, vol.377
, pp. 625-632
-
-
Wende, W.1
Stahl, F.2
Pingoud, A.3
-
437
-
-
0034529393
-
Characterization of the specific DNA nicking activity of restriction endonuclease N.BstNBI
-
Morgan, R.D., Calvet, C., Demeter, M., Agra, R., Kong, H.M. (2000) Characterization of the specific DNA nicking activity of restriction endonuclease N.BstNBI. Biol. Chem., 381, 1123-1125.
-
(2000)
Biol. Chem.
, vol.381
, pp. 1123-1125
-
-
Morgan, R.D.1
Calvet, C.2
Demeter, M.3
Agra, R.4
Kong, H.M.5
-
438
-
-
0030032063
-
Hybrid restriction enzymes: Zinc finger fusions to FokI cleavage domain
-
Kim, Y.G., Cha, J., Chandrasegaran, S. (1996) Hybrid restriction enzymes: zinc finger fusions to FokI cleavage domain. Proc. Natl. Acad. Sci. U.S.A., 93, 1156-1160.
-
(1996)
Proc. Natl. Acad. Sci. U.S.A.
, vol.93
, pp. 1156-1160
-
-
Kim, Y.G.1
Cha, J.2
Chandrasegaran, S.3
-
439
-
-
0027398943
-
Alteration of the cleavage distance of Fok i restriction endonuclease by insertion mutagenesis
-
Li, L., Chandrasegaran, S. (1993) Alteration of the cleavage distance of Fok I restriction endonuclease by insertion mutagenesis. Proc. Natl. Acad. Sci. U.S.A., 90, 2764-2768.
-
(1993)
Proc. Natl. Acad. Sci. U.S.A.
, vol.90
, pp. 2764-2768
-
-
Li, L.1
Chandrasegaran, S.2
-
440
-
-
0027518230
-
C-terminal deletion mutants of the FokI restriction endonuclease
-
Li, L., Wu, L.P., Clarke, R., Chandrasegaran, S. (1993) C-terminal deletion mutants of the FokI restriction endonuclease. Gene, 133, 79-84.
-
(1993)
Gene
, vol.133
, pp. 79-84
-
-
Li, L.1
Wu, L.P.2
Clarke, R.3
Chandrasegaran, S.4
-
441
-
-
0028091729
-
Insertion and deletion mutants of FokI restriction endonuclease
-
Kim, Y.G., Li, L., Chandrasegaran, S. (1994) Insertion and deletion mutants of FokI restriction endonuclease. J. Biol. Chem., 269, 31978-31982.
-
(1994)
J. Biol. Chem.
, vol.269
, pp. 31978-31982
-
-
Kim, Y.G.1
Li, L.2
Chandrasegaran, S.3
-
442
-
-
0027429846
-
Single amino acid substitutions uncouple the DNA binding and strand scission activities of Fok i endonuclease
-
Waugh, D.S., Sauer, R.T. (1993) Single amino acid substitutions uncouple the DNA binding and strand scission activities of Fok I endonuclease. Proc. Natl. Acad. Sci. U.S.A., 90, 9596-9600.
-
(1993)
Proc. Natl. Acad. Sci. U.S.A.
, vol.90
, pp. 9596-9600
-
-
Waugh, D.S.1
Sauer, R.T.2
-
443
-
-
0040215628
-
Repetitive zinc-binding domains in the protein transcription factor IIIA from Xenopus oocytes
-
Miller, J., McLachlan, A.D., Klug, A. (1985) Repetitive zinc-binding domains in the protein transcription factor IIIA from Xenopus oocytes. EMBO J., 4, 1609-1614.
-
(1985)
EMBO J.
, vol.4
, pp. 1609-1614
-
-
Miller, J.1
McLachlan, A.D.2
Klug, A.3
-
444
-
-
77953633943
-
The discovery of zinc fingers and their applications in gene regulation and genome manipulation
-
Klug, A. (2010) The discovery of zinc fingers and their applications in gene regulation and genome manipulation. Annu. Rev. Biochem., 79, 213-231.
-
(2010)
Annu. Rev. Biochem.
, vol.79
, pp. 213-231
-
-
Klug, A.1
-
445
-
-
38549136058
-
Custom-designed zinc finger nucleases: What is next?
-
Wu, J., Kandavelou, K., Chandrasegaran, S. (2007) Custom-designed zinc finger nucleases: what is next? Cell. Mol. Life Sci., 64, 2933-2944.
-
(2007)
Cell. Mol. Life Sci.
, vol.64
, pp. 2933-2944
-
-
Wu, J.1
Kandavelou, K.2
Chandrasegaran, S.3
-
446
-
-
27744530147
-
Zinc finger nucleases: Custom-designed molecular scissors for genome engineering of plant and mammalian cells
-
Durai, S., Mani, M., Kandavelou, K., Wu, J., Porteus, M.H., Chandrasegaran, S. (2005) Zinc finger nucleases: custom-designed molecular scissors for genome engineering of plant and mammalian cells. Nucleic Acids Res., 33, 5978-5990.
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 5978-5990
-
-
Durai, S.1
Mani, M.2
Kandavelou, K.3
Wu, J.4
Porteus, M.H.5
Chandrasegaran, S.6
-
447
-
-
18944373328
-
Highly efficient endogenous human gene correction using designed zinc-finger nucleases
-
Urnov, F.D., Miller, J.C., Lee, Y.L., Beausejour, C.M., Rock, J.M., Augustus, S., Jamieson, A.C., Porteus, M.H., Gregory, P.D., Holmes, M.C. (2005) Highly efficient endogenous human gene correction using designed zinc-finger nucleases. Nature, 435, 646-651.
-
(2005)
Nature
, vol.435
, pp. 646-651
-
-
Urnov, F.D.1
Miller, J.C.2
Lee, Y.L.3
Beausejour, C.M.4
Rock, J.M.5
Augustus, S.6
Jamieson, A.C.7
Porteus, M.H.8
Gregory, P.D.9
Holmes, M.C.10
-
448
-
-
79951699566
-
Zinc-finger nuclease based genome surgery: It's all about specificity
-
Handel, E.M., Cathomen, T. (2011) Zinc-finger nuclease based genome surgery: it's all about specificity. Curr. Gene Ther., 11, 28-37.
-
(2011)
Curr. Gene Ther.
, vol.11
, pp. 28-37
-
-
Handel, E.M.1
Cathomen, T.2
-
449
-
-
79951711771
-
Zinc-finger nucleases: A panoramic view
-
Carroll, D. (2011) Zinc-finger nucleases: a panoramic view. Curr. Gene Ther., 11, 2-10.
-
(2011)
Curr. Gene Ther.
, vol.11
, pp. 2-10
-
-
Carroll, D.1
-
450
-
-
77955867185
-
Genome editing with engineered zinc finger nucleases
-
Urnov, F.D., Rebar, E.J., Holmes, M.C., Zhang, H.S., Gregory, P.D. (2010) Genome editing with engineered zinc finger nucleases. Nat. Rev. Genet., 11, 636-646.
-
(2010)
Nat. Rev. Genet.
, vol.11
, pp. 636-646
-
-
Urnov, F.D.1
Rebar, E.J.2
Holmes, M.C.3
Zhang, H.S.4
Gregory, P.D.5
-
451
-
-
80052293623
-
Revealing off-target cleavage specificities of zinc-finger nucleases by in vitro selection
-
Pattanayak, V., Ramirez, C.L., Joung, J.K., Liu, D.R. (2011) Revealing off-target cleavage specificities of zinc-finger nucleases by in vitro selection. Nat. Methods, 8, 765-770.
-
(2011)
Nat. Methods
, vol.8
, pp. 765-770
-
-
Pattanayak, V.1
Ramirez, C.L.2
Joung, J.K.3
Liu, D.R.4
-
452
-
-
80052766645
-
An unbiased genome-wide analysis of zinc-finger nuclease specificity
-
Gabriel, R., Lombardo, A., Arens, A., Miller, J.C., Genovese, P., Kaeppel, C., Nowrouzi, A., Bartholomae, C.C., Wang, J., Friedman, G. et al. (2011) An unbiased genome-wide analysis of zinc-finger nuclease specificity. Nat. Biotechnol., 29, 816-823.
-
(2011)
Nat. Biotechnol.
, vol.29
, pp. 816-823
-
-
Gabriel, R.1
Lombardo, A.2
Arens, A.3
Miller, J.C.4
Genovese, P.5
Kaeppel, C.6
Nowrouzi, A.7
Bartholomae, C.C.8
Wang, J.9
Friedman, G.10
-
453
-
-
34447319080
-
An improved zinc-finger nuclease architecture for highly specific genome editing
-
Miller, J.C., Holmes, M.C., Wang, J., Guschin, D.Y., Lee, Y.L., Rupniewski, I., Beausejour, C.M., Waite, A.J., Wang, N.S., Kim, K.A. et al. (2007) An improved zinc-finger nuclease architecture for highly specific genome editing. Nat. Biotechnol., 25, 778-785.
-
(2007)
Nat. Biotechnol.
, vol.25
, pp. 778-785
-
-
Miller, J.C.1
Holmes, M.C.2
Wang, J.3
Guschin, D.Y.4
Lee, Y.L.5
Rupniewski, I.6
Beausejour, C.M.7
Waite, A.J.8
Wang, N.S.9
Kim, K.A.10
-
454
-
-
34447323568
-
Structure-based redesign of the dimerization interface reduces the toxicity of zinc-finger nucleases
-
Szczepek, M., Brondani, V., Buchel, J., Serrano, L., Segal, D.J., Cathomen, T. (2007) Structure-based redesign of the dimerization interface reduces the toxicity of zinc-finger nucleases. Nat. Biotechnol., 25, 786-793.
-
(2007)
Nat. Biotechnol.
, vol.25
, pp. 786-793
-
-
Szczepek, M.1
Brondani, V.2
Buchel, J.3
Serrano, L.4
Segal, D.J.5
Cathomen, T.6
-
455
-
-
84859311372
-
A novel zinc-finger nuclease platform with a sequence-specific cleavage module
-
Schierling, B., Dannemann, N., Gabsalilow, L., Wende, W., Cathomen, T., Pingoud, A. (2012) A novel zinc-finger nuclease platform with a sequence-specific cleavage module. Nucleic Acids Res., 40, 2623-2638.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 2623-2638
-
-
Schierling, B.1
Dannemann, N.2
Gabsalilow, L.3
Wende, W.4
Cathomen, T.5
Pingoud, A.6
-
456
-
-
72149090954
-
A simple cipher governs DNA recognition by TAL effectors
-
Moscou, M.J., Bogdanove, A.J. (2009) A simple cipher governs DNA recognition by TAL effectors. Science, 326, 1501.
-
(2009)
Science
, vol.326
, pp. 1501
-
-
Moscou, M.J.1
Bogdanove, A.J.2
-
457
-
-
72149110399
-
Breaking the code of DNA binding specificity of TAL-type III effectors
-
Boch, J., Scholze, H., Schornack, S., Landgraf, A., Hahn, S., Kay, S., Lahaye, T., Nickstadt, A., Bonas, U. (2009) Breaking the code of DNA binding specificity of TAL-type III effectors. Science, 326, 1509-1512.
-
(2009)
Science
, vol.326
, pp. 1509-1512
-
-
Boch, J.1
Scholze, H.2
Schornack, S.3
Landgraf, A.4
Hahn, S.5
Kay, S.6
Lahaye, T.7
Nickstadt, A.8
Bonas, U.9
-
458
-
-
84873522297
-
TAL effectors: Function, structure, engineering and applications
-
Mak, A.N., Bradley, P., Bogdanove, A.J., Stoddard, B.L. (2013) TAL effectors: function, structure, engineering and applications. Curr. Opin. Struct. Biol., 23, 93-99.
-
(2013)
Curr. Opin. Struct. Biol.
, vol.23
, pp. 93-99
-
-
Mak, A.N.1
Bradley, P.2
Bogdanove, A.J.3
Stoddard, B.L.4
-
459
-
-
84857032466
-
Structural basis for sequence-specific recognition of DNA by TAL effectors
-
Deng, D., Yan, C., Pan, X., Mahfouz, M., Wang, J., Zhu, J.K., Shi, Y., Yan, N. (2012) Structural basis for sequence-specific recognition of DNA by TAL effectors. Science, 335, 720-723.
-
(2012)
Science
, vol.335
, pp. 720-723
-
-
Deng, D.1
Yan, C.2
Pan, X.3
Mahfouz, M.4
Wang, J.5
Zhu, J.K.6
Shi, Y.7
Yan, N.8
-
460
-
-
84857029597
-
The crystal structure of TAL effector PthXo1 bound to its DNA target
-
Mak, A.N., Bradley, P., Cernadas, R.A., Bogdanove, A.J., Stoddard, B.L. (2012) The crystal structure of TAL effector PthXo1 bound to its DNA target. Science, 335, 716-719.
-
(2012)
Science
, vol.335
, pp. 716-719
-
-
Mak, A.N.1
Bradley, P.2
Cernadas, R.A.3
Bogdanove, A.J.4
Stoddard, B.L.5
-
461
-
-
84871519181
-
TALENs: A widely applicable technology for targeted genome editing.Nat
-
Joung, J.K., Sander, J.D. (2012) TALENs: a widely applicable technology for targeted genome editing.Nat. Rev. Mol. Cell Biol., 14, 49-55.
-
(2012)
Rev. Mol. Cell Biol.
, vol.14
, pp. 49-55
-
-
Joung, J.K.1
Sander, J.D.2
-
462
-
-
84865297223
-
Advances in targeted genome editing
-
Perez-Pinera, P., Ousterout, D.G., Gersbach, C.A. (2012) Advances in targeted genome editing. Curr. Opin. Chem. Biol., 16, 268-277.
-
(2012)
Curr. Opin. Chem. Biol.
, vol.16
, pp. 268-277
-
-
Perez-Pinera, P.1
Ousterout, D.G.2
Gersbach, C.A.3
-
463
-
-
79551685675
-
A TALE nuclease architecture for efficient genome editing
-
Miller, J.C., Tan, S., Qiao, G., Barlow, K.A., Wang, J., Xia, D.F., Meng, X., Paschon, D.E., Leung, E., Hinkley, S.J. et al. (2011) A TALE nuclease architecture for efficient genome editing. Nat. Biotechnol., 29, 143-148.
-
(2011)
Nat. Biotechnol.
, vol.29
, pp. 143-148
-
-
Miller, J.C.1
Tan, S.2
Qiao, G.3
Barlow, K.A.4
Wang, J.5
Xia, D.F.6
Meng, X.7
Paschon, D.E.8
Leung, E.9
Hinkley, S.J.10
-
464
-
-
84891942333
-
TALE-PvuII fusion proteins-novel tools for gene targeting
-
Yanik, M., Alzubi, J., Lahaye, T., Cathomen, T., Pingoud, A., Wende, W. (2013) TALE-PvuII fusion proteins-novel tools for gene targeting. PLoS One, 8, e82539s.
-
(2013)
PLoS One
, vol.8
-
-
Yanik, M.1
Alzubi, J.2
Lahaye, T.3
Cathomen, T.4
Pingoud, A.5
Wende, W.6
-
465
-
-
84876556023
-
Site- and strand-specific nicking of DNA by fusion proteins derived from MutH and I-SceI or TALE repeats
-
Gabsalilow, L., Schierling, B., Friedhoff, P., Pingoud, A., Wende, W. (2013) Site- and strand-specific nicking of DNA by fusion proteins derived from MutH and I-SceI or TALE repeats. Nucleic Acids Res., 41, e83.
-
(2013)
Nucleic Acids Res.
, vol.41
-
-
Gabsalilow, L.1
Schierling, B.2
Friedhoff, P.3
Pingoud, A.4
Wende, W.5
-
466
-
-
84861984839
-
Targeted gene addition to a predetermined site in the human genome using a ZFN-based nicking enzyme
-
Wang, J., Friedman, G., Doyon, Y., Wang, N.S., Li, C.J., Miller, J.C., Hua, K.L., Yan, J.J., Babiarz, J.E., Gregory, P.D. et al. (2012) Targeted gene addition to a predetermined site in the human genome using a ZFN-based nicking enzyme. Genome Res., 22, 1316-1326.
-
(2012)
Genome Res.
, vol.22
, pp. 1316-1326
-
-
Wang, J.1
Friedman, G.2
Doyon, Y.3
Wang, N.S.4
Li, C.J.5
Miller, J.C.6
Hua, K.L.7
Yan, J.J.8
Babiarz, J.E.9
Gregory, P.D.10
-
467
-
-
84861960685
-
Engineered zinc finger nickases induce homology-directed repair with reduced mutagenic effects
-
Ramirez, C.L., Certo, M.T., Mussolino, C., Goodwin, M.J., Cradick, T.J., McCaffrey, A.P., Cathomen, T., Scharenberg, A.M., Joung, J.K. (2012) Engineered zinc finger nickases induce homology-directed repair with reduced mutagenic effects. Nucleic Acids Res., 40, 5560-5568.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 5560-5568
-
-
Ramirez, C.L.1
Certo, M.T.2
Mussolino, C.3
Goodwin, M.J.4
Cradick, T.J.5
McCaffrey, A.P.6
Cathomen, T.7
Scharenberg, A.M.8
Joung, J.K.9
-
468
-
-
84861990434
-
Precision genome engineering with programmable DNA-nicking enzymes
-
Kim, E., Kim, S., Kim, D.H., Choi, B.S., Choi, I.Y., Kim, J.S. (2012) Precision genome engineering with programmable DNA-nicking enzymes. Genome Res., 22, 1327-1333.
-
(2012)
Genome Res.
, vol.22
, pp. 1327-1333
-
-
Kim, E.1
Kim, S.2
Kim, D.H.3
Choi, B.S.4
Choi, I.Y.5
Kim, J.S.6
-
469
-
-
84901341739
-
Engineering nicking enzymes that preferentially nick 5-methylcytosine- modified DNA
-
Gutjahr, A., Xu, S.Y. (2014) Engineering nicking enzymes that preferentially nick 5-methylcytosine-modified DNA. Nucleic Acids Res., 42, e77.
-
(2014)
Nucleic Acids Res.
, vol.42
-
-
Gutjahr, A.1
Xu, S.Y.2
|