Amino acid-base interactions: A three-dimensional analysis of protein-DNA interactions at an atomic level

Nucleic Acids Research

Volumn 29, Issue 13, 2001, Pages 2860-2874

  Luscombe, Nicholas M ^a,c   Laskowski, Roman A ^b   Thornton, Janet M ^a,b  

^a UNIVERSITY COLLEGE LONDON   (United Kingdom)

^b UNIVERSITY OF LONDON   (United Kingdom)

^c YALE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ADENINE; ALANINE; AMINO ACID; ARGININE; ASPARAGINE; ASPARTIC ACID; CYSTEINE; CYTOSINE; DNA BASE; GLUTAMIC ACID; GLUTAMINE; GLYCINE; GUANINE; HISTIDINE; HYDROGEN; ISOLEUCINE; LEUCINE; LYSINE; METHIONINE; PHENYLALANINE; PHOSPHATE; PROLINE; SERINE; SUGAR; THREONINE; THYMINE; TRYPTOPHAN; TYROSINE; VALINE; WATER;

ACID BASE BALANCE; ARTICLE; CHEMICAL STRUCTURE; COMPLEX FORMATION; CONTROLLED STUDY; CORRELATION FUNCTION; DNA SEQUENCE; DNA STRUCTURE; GEOMETRY; HYDROGEN BOND; MOLECULAR STABILITY; PRIORITY JOURNAL; PROTEIN DNA INTERACTION; STEREOCHEMISTRY;

EID: 0035393302     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/29.13.2860     Document Type: Article

References (25)

1. Sequence-specific recognition of double helical nucleic acids by proteins
2. Protein-DNA recognition
3. No code for recognition
4. Transcription factors: Structural families and principles of DNA recognition
5. A framework for the DNA-protein recognition code of the probe helix in transcription factors: The chemical and stereochemical rules
6. Comprehensive analysis of hydrogen bonds in regulatory protein-DNA complexes: In search of common principles
7. Secret code
8. The Protein Data Bank: A computer-based archival file for macromolecular structures
9. The Protein Data Bank
10. The Nucleic Acid Database. A comprehensive relational database of three-dimensional structures of nucleic acids
11. SSAP: Sequential structure alignment program for protein structure comparison
12. Identification and classification of protein fold families
13. CORA-topological fingerprints for protein structural families
14. Satisfying hydrogen bonding potential in proteins
15. Sequences annotated by structure: A tool to facilitate the use of structural information in sequence analysis
16. Principles of protein-protein interactions
17. NACCESS: A program to calculate atomic and residue accessibilities
18. The CATH Database provides insights into protein structure/function relationships
19. The SWISS-PROT protein sequence database and its supplement TrEMBL in
20. PQS: A protein quaternary structure file server
21. The interaction between phenylalanine rings in proteins
22. Protein-DNA interactions: A structural analysis
23. Tandem binding in crystals of a Trp repressor/operator half-site complex
24. RasMol: Biomolecular graphics for all