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Volumn 326, Issue 4, 2003, Pages 1051-1064

The metal-independent type IIs restriction enzyme BfiI is a dimer that binds two DNA sites but has only one catalytic centre

Author keywords

Active site; DNA cleavage; DNA recognition; DNA protein interaction; Restriction endonuclease

Indexed keywords

EDETIC ACID; ENZYME; PHOSPHOLIPASE D; RESTRICTION ENDONUCLEASE BFI 1; TYPE II SITE SPECIFIC DEOXYRIBONUCLEASE; UNCLASSIFIED DRUG;

EID: 0037470599     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0022-2836(03)00020-2     Document Type: Article
Times cited : (59)

References (41)
  • 1
    • 0035175516 scopus 로고    scopus 로고
    • REBASE-restriction enzymes and methylases
    • Roberts R.J., Macelis D. REBASE-restriction enzymes and methylases. Nucl. Acids Res. 29:2001;268-269.
    • (2001) Nucl. Acids Res. , vol.29 , pp. 268-269
    • Roberts, R.J.1    Macelis, D.2
  • 2
    • 0035883723 scopus 로고    scopus 로고
    • Structure and function of type II restriction endonucleases
    • Pingoud A., Jeltsch A. Structure and function of type II restriction endonucleases. Nucl. Acids Res. 29:2001;3705-3727.
    • (2001) Nucl. Acids Res. , vol.29 , pp. 3705-3727
    • Pingoud, A.1    Jeltsch, A.2
  • 3
    • 0034877122 scopus 로고    scopus 로고
    • Hopping, jumping and looping by restriction enzymes
    • Halford S.E. Hopping, jumping and looping by restriction enzymes. Biochem. Soc. Trans. 29:2001;363-374.
    • (2001) Biochem. Soc. Trans. , vol.29 , pp. 363-374
    • Halford, S.E.1
  • 4
    • 0037040190 scopus 로고    scopus 로고
    • The type IIs restriction endonuclease BspMI is a tetramer that acts concertedly at two copies of an asymmetric DNA sequence
    • Gormley N.A., Hillberg A.L., Halford S.E. The type IIs restriction endonuclease BspMI is a tetramer that acts concertedly at two copies of an asymmetric DNA sequence. J. Biol. Chem. 277:2002;4034-4041.
    • (2002) J. Biol. Chem. , vol.277 , pp. 4034-4041
    • Gormley, N.A.1    Hillberg, A.L.2    Halford, S.E.3
  • 5
    • 0028988946 scopus 로고
    • The SfiI restriction endonuclease makes a four-strand DNA break at two copies of its recognition sequence
    • Wentzell L.M., Nobbs T.J., Halford S.E. The SfiI restriction endonuclease makes a four-strand DNA break at two copies of its recognition sequence. J. Mol. Biol. 248:1995;581-595.
    • (1995) J. Mol. Biol. , vol.248 , pp. 581-595
    • Wentzell, L.M.1    Nobbs, T.J.2    Halford, S.E.3
  • 7
    • 0033818703 scopus 로고    scopus 로고
    • Structure of the tetrameric restriction endonuclease NgoMIV in complex with cleaved DNA
    • Deibert M., Grazulis S., Sasnauskas G., Siksnys V., Huber R. Structure of the tetrameric restriction endonuclease NgoMIV in complex with cleaved DNA. Nature Struct. Biol. 7:2000;792-799.
    • (2000) Nature Struct. Biol. , vol.7 , pp. 792-799
    • Deibert, M.1    Grazulis, S.2    Sasnauskas, G.3    Siksnys, V.4    Huber, R.5
  • 8
    • 0037082418 scopus 로고    scopus 로고
    • Crystal structure of the Bse634I restriction endonuclease: Comparison of two enzymes recognizing the same DNA sequence
    • Grazulis S., Deibert M., Rimseliene R., Skirgaila R., Sasnauskas G., Lagunavicius A., et al. Crystal structure of the Bse634I restriction endonuclease: comparison of two enzymes recognizing the same DNA sequence. Nucl. Acids Res. 30:2002;876-885.
    • (2002) Nucl. Acids Res. , vol.30 , pp. 876-885
    • Grazulis, S.1    Deibert, M.2    Rimseliene, R.3    Skirgaila, R.4    Sasnauskas, G.5    Lagunavicius, A.6
  • 10
    • 0024536167 scopus 로고
    • The FokI restriction-modification system I. Organization and nucleotide sequences of the restriction and modification genes
    • Kita K., Kotani H., Sugisaki H., Takanami M. The FokI restriction-modification system I. Organization and nucleotide sequences of the restriction and modification genes. J. Biol. Chem. 264:1989;5751-5756.
    • (1989) J. Biol. Chem. , vol.264 , pp. 5751-5756
    • Kita, K.1    Kotani, H.2    Sugisaki, H.3    Takanami, M.4
  • 11
    • 0037040271 scopus 로고    scopus 로고
    • Many type IIs restriction endonucleases interact with two recognition sites before cleaving DNA
    • Bath A.J., Milsom S.E., Gormley N.A., Halford S.E. Many type IIs restriction endonucleases interact with two recognition sites before cleaving DNA. J. Biol. Chem. 277:2002;4024-4033.
    • (2002) J. Biol. Chem. , vol.277 , pp. 4024-4033
    • Bath, A.J.1    Milsom, S.E.2    Gormley, N.A.3    Halford, S.E.4
  • 13
    • 0028091729 scopus 로고
    • Insertion and deletion mutants of FokI restriction endonuclease
    • Kim Y.-G., Li L., Chandrasegaran S. Insertion and deletion mutants of FokI restriction endonuclease. J. Biol. Chem. 269:1994;31978-31982.
    • (1994) J. Biol. Chem. , vol.269 , pp. 31978-31982
    • Kim, Y.-G.1    Li, L.2    Chandrasegaran, S.3
  • 17
    • 0032527739 scopus 로고    scopus 로고
    • BfiI, a restriction endonuclease from Bacillus firmus S8120, which recognizes the novel non-palindromic sequence 5′-ACTGGG(N)5/4-3′
    • Vitkute J., Maneliene Z., Petrusyte M., Janulaitis A. BfiI, a restriction endonuclease from Bacillus firmus S8120, which recognizes the novel non-palindromic sequence 5′-ACTGGG(N)5/4-3′ Nucl. Acids Res. 26:1998;3348-3349.
    • (1998) Nucl. Acids Res. , vol.26 , pp. 3348-3349
    • Vitkute, J.1    Maneliene, Z.2    Petrusyte, M.3    Janulaitis, A.4
  • 20
    • 0029921149 scopus 로고    scopus 로고
    • A novel family of phospholipase D homologues that includes phospholipid synthases and putative endonucleases: Identification of duplicated repeats and potential active site residues
    • Ponting C.P., Kerr I.D. A novel family of phospholipase D homologues that includes phospholipid synthases and putative endonucleases: identification of duplicated repeats and potential active site residues. Protein Sci. 5:1996;914-922.
    • (1996) Protein Sci. , vol.5 , pp. 914-922
    • Ponting, C.P.1    Kerr, I.D.2
  • 21
    • 0033010811 scopus 로고    scopus 로고
    • Crystal structure of a phospholipase D family member
    • Stuckey J.A., Dixon J.E. Crystal structure of a phospholipase D family member. Nature Struct. Biol. 6:1999;278-284.
    • (1999) Nature Struct. Biol. , vol.6 , pp. 278-284
    • Stuckey, J.A.1    Dixon, J.E.2
  • 22
    • 0027432348 scopus 로고
    • Genetic and biochemical analysis of an endonuclease encoded by the IncN plasmid pKM101
    • Pohlman R.F., Liu F., Wang L., More M.I., Winans S.C. Genetic and biochemical analysis of an endonuclease encoded by the IncN plasmid pKM101. Nucl. Acids Res. 21:1993;4867-4872.
    • (1993) Nucl. Acids Res. , vol.21 , pp. 4867-4872
    • Pohlman, R.F.1    Liu, F.2    Wang, L.3    More, M.I.4    Winans, S.C.5
  • 23
    • 0032482941 scopus 로고    scopus 로고
    • Catalytic mechanism of the phospholipase D superfamily proceeds via a covalent phosphohistidine intermediate
    • Gottlin E.B., Rudolph A.E., Zhao Y., Matthews H.R., Dixon J.E. Catalytic mechanism of the phospholipase D superfamily proceeds via a covalent phosphohistidine intermediate. Proc. Natl Acad. Sci. USA. 95:1998;9202-9207.
    • (1998) Proc. Natl Acad. Sci. USA , vol.95 , pp. 9202-9207
    • Gottlin, E.B.1    Rudolph, A.E.2    Zhao, Y.3    Matthews, H.R.4    Dixon, J.E.5
  • 24
    • 0031441087 scopus 로고    scopus 로고
    • Expression, characterization, and crystallization of a member of the novel phospholipase D family of phosphodiesterases
    • Zhao Y., Stuckey J.A., Lohse D.L., Dixon J.E. Expression, characterization, and crystallization of a member of the novel phospholipase D family of phosphodiesterases. Protein Sci. 6:1997;2655-2658.
    • (1997) Protein Sci. , vol.6 , pp. 2655-2658
    • Zhao, Y.1    Stuckey, J.A.2    Lohse, D.L.3    Dixon, J.E.4
  • 25
    • 0030886218 scopus 로고    scopus 로고
    • Site-directed mutagenesis of putative active site residues of MunI restriction endonuclease: Replacement of catalytically essential carboxylate residues triggers DNA binding specificity
    • Lagunavicius A., Siksnys V. Site-directed mutagenesis of putative active site residues of MunI restriction endonuclease: replacement of catalytically essential carboxylate residues triggers DNA binding specificity. Biochemistry. 36:1997;11086-11092.
    • (1997) Biochemistry , vol.36 , pp. 11086-11092
    • Lagunavicius, A.1    Siksnys, V.2
  • 26
    • 0037042192 scopus 로고    scopus 로고
    • Alternative arrangements of catalytic residues at the active sites of restriction enzymes
    • Tamulaitis G., Solonin A.S., Siksnys V. Alternative arrangements of catalytic residues at the active sites of restriction enzymes. FEBS Letters. 518:2002;17-22.
    • (2002) FEBS Letters , vol.518 , pp. 17-22
    • Tamulaitis, G.1    Solonin, A.S.2    Siksnys, V.3
  • 27
    • 0028934112 scopus 로고
    • Specific DNA recognition by EcoRV restriction endonuclease induced by calcium ions
    • Vipond I.B., Halford S.E. Specific DNA recognition by EcoRV restriction endonuclease induced by calcium ions. Biochemistry. 34:1995;1113-1119.
    • (1995) Biochemistry , vol.34 , pp. 1113-1119
    • Vipond, I.B.1    Halford, S.E.2
  • 28
    • 0032983155 scopus 로고    scopus 로고
    • Specificity from the synapsis of DNA elements by the SfiI endonuclease
    • Embleton M.L., Williams S.A., Watson M.A., Halford S.E. Specificity from the synapsis of DNA elements by the SfiI endonuclease. J. Mol. Biol. 289:1999;785-797.
    • (1999) J. Mol. Biol. , vol.289 , pp. 785-797
    • Embleton, M.L.1    Williams, S.A.2    Watson, M.A.3    Halford, S.E.4
  • 29
    • 0034607553 scopus 로고    scopus 로고
    • Alternative geometries of DNA looping: An analysis using the SfiI endonuclease
    • Watson M.A., Gowers D.M., Halford S.E. Alternative geometries of DNA looping: an analysis using the SfiI endonuclease. J. Mol. Biol. 298:2000;461-475.
    • (2000) J. Mol. Biol. , vol.298 , pp. 461-475
    • Watson, M.A.1    Gowers, D.M.2    Halford, S.E.3
  • 30
    • 0035946911 scopus 로고    scopus 로고
    • FokI requires two specific DNA sites for cleavage
    • Vanamee E.S., Santagata S., Aggarwal A.K. FokI requires two specific DNA sites for cleavage. J. Mol. Biol. 309:2001;69-78.
    • (2001) J. Mol. Biol. , vol.309 , pp. 69-78
    • Vanamee, E.S.1    Santagata, S.2    Aggarwal, A.K.3
  • 31
    • 0030964130 scopus 로고    scopus 로고
    • A stable RAG1-RAG2-DNA complex that is active in V(D)J cleavage
    • Hiom K., Gellert M. A stable RAG1-RAG2-DNA complex that is active in V(D)J cleavage. Cell. 88:1997;65-72.
    • (1997) Cell , vol.88 , pp. 65-72
    • Hiom, K.1    Gellert, M.2
  • 32
    • 0035902776 scopus 로고    scopus 로고
    • Analysis of DNA looping interactions by type II restriction enzymes that require two copies of their recognition sites
    • Milsom S.E., Halford S.E., Embleton M.L., Szczelkun M.D. Analysis of DNA looping interactions by type II restriction enzymes that require two copies of their recognition sites. J. Mol. Biol. 311:2001;515-527.
    • (2001) J. Mol. Biol. , vol.311 , pp. 515-527
    • Milsom, S.E.1    Halford, S.E.2    Embleton, M.L.3    Szczelkun, M.D.4
  • 33
    • 0033579567 scopus 로고    scopus 로고
    • Reactions of type II restriction endonucleases with 8-base pair recognition sites
    • Bilcock D.T., Daniels L.E., Bath A.J., Halford S.E. Reactions of type II restriction endonucleases with 8-base pair recognition sites. J. Biol. Chem. 274:1999;36379-36386.
    • (1999) J. Biol. Chem. , vol.274 , pp. 36379-36386
    • Bilcock, D.T.1    Daniels, L.E.2    Bath, A.J.3    Halford, S.E.4
  • 35
    • 0024284313 scopus 로고
    • EcoRII can be activated to cleave refractory DNA recognition sites
    • Kruger D.H., Barcak G.J., Reuter M., Smith H.O. EcoRII can be activated to cleave refractory DNA recognition sites. Nucl. Acids Res. 16:1988;3997-4008.
    • (1988) Nucl. Acids Res. , vol.16 , pp. 3997-4008
    • Kruger, D.H.1    Barcak, G.J.2    Reuter, M.3    Smith, H.O.4
  • 36
    • 0026784663 scopus 로고
    • Modified DNA fragments activate NaeI cleavage of refractory DNA sites
    • Conrad M., Topal M.D. Modified DNA fragments activate NaeI cleavage of refractory DNA sites. Nucl. Acids Res. 20:1992;5127-5130.
    • (1992) Nucl. Acids Res. , vol.20 , pp. 5127-5130
    • Conrad, M.1    Topal, M.D.2
  • 37
    • 0029978713 scopus 로고    scopus 로고
    • Recombination by resolvase to analyse DNA communications by the SfiI restriction endonuclease
    • Szczelkun M.D., Halford S.E. Recombination by resolvase to analyse DNA communications by the SfiI restriction endonuclease. EMBO J. 15:1996;1460-1469.
    • (1996) EMBO J. , vol.15 , pp. 1460-1469
    • Szczelkun, M.D.1    Halford, S.E.2
  • 38
    • 0035902832 scopus 로고    scopus 로고
    • DNA cleavage reactions by type II restriction enzymes that require two copies of their recognition sites
    • Embleton M.L., Siksnys V., Halford S.E. DNA cleavage reactions by type II restriction enzymes that require two copies of their recognition sites. J. Mol. Biol. 311:2001;503-514.
    • (2001) J. Mol. Biol. , vol.311 , pp. 503-514
    • Embleton, M.L.1    Siksnys, V.2    Halford, S.E.3
  • 39
    • 0029245364 scopus 로고
    • Site-directed mutagenesis by double polymerase chain reaction
    • Barik S. Site-directed mutagenesis by double polymerase chain reaction. Mol. Biotechnol. 3:1995;1-7.
    • (1995) Mol. Biotechnol. , vol.3 , pp. 1-7
    • Barik, S.1
  • 40
    • 0003903343 scopus 로고
    • J. Sambrook, E.F. Fritsch, & T. Maniatis. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press
    • Sambrook J., Fritsch E.F., Maniatis T. Molecular Cloning: A Laboratory Manual. 2nd edit. 1989;Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
    • (1989) Molecular Cloning: A Laboratory Manual 2nd edit.
  • 41
    • 0029902679 scopus 로고    scopus 로고
    • Program DYNAFIT for the analysis of enzyme kinetic data: Application to HIV proteinase
    • Kuzmic P. Program DYNAFIT for the analysis of enzyme kinetic data: application to HIV proteinase. Anal. Biochem. 237:1996;260-273.
    • (1996) Anal. Biochem. , vol.237 , pp. 260-273
    • Kuzmic, P.1


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