메뉴 건너뛰기




Volumn 37, Issue 15, 2009, Pages 5208-5221

The MmeI family: Type II restriction-modification enzymes that employ single-strand modification for host protection

Author keywords

[No Author keywords available]

Indexed keywords

ADENINE; ENDONUCLEASE; METHYLTRANSFERASE; PROTEIN MMEI; SINGLE STRANDED DNA; TYPE II SITE SPECIFIC DEOXYRIBONUCLEASE; UNCLASSIFIED DRUG;

EID: 69849115232     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkp534     Document Type: Article
Times cited : (57)

References (36)
  • 1
    • 33846078626 scopus 로고    scopus 로고
    • REBASE-enzymes and genes for DNA restriction and modification
    • Roberts,R.J., Vincze,T., Posfai,J. and Macelis,D. (2007) REBASE-enzymes and genes for DNA restriction and modification. Nucleic Acids Res. 35, D269-D270.
    • (2007) Nucleic Acids Res , vol.35
    • Roberts, R.J.1    Vincze, T.2    Posfai, J.3    Macelis, D.4
  • 2
    • 0002448632 scopus 로고    scopus 로고
    • Restriction modification systems: Where they are and what they do
    • De Bruijn,F.J, Lupski,J.R. and Weinstock,G.M, eds, Chapman & Hall, New York, pp
    • Raleigh,E.A. and Brooks,J.E. (1998) Restriction modification systems: where they are and what they do. In De Bruijn,F.J., Lupski,J.R. and Weinstock,G.M. (eds), Bacterial Genomes. Chapman & Hall, New York, pp. 78-92.
    • (1998) Bacterial Genomes , pp. 78-92
    • Raleigh, E.A.1    Brooks, J.E.2
  • 3
    • 0026613987 scopus 로고
    • Purification and properties of the Eco57I restriction endonuclease and methylase-prototypes of a new class (type IV)
    • Janulaitis,A., Petrusyte,M., Maneliene,Z., Klimasauskas,S. and Butkus,V. (1992) Purification and properties of the Eco57I restriction endonuclease and methylase-prototypes of a new class (type IV). Nucleic Acids Res., 20, 6043-6049.
    • (1992) Nucleic Acids Res , vol.20 , pp. 6043-6049
    • Janulaitis, A.1    Petrusyte, M.2    Maneliene, Z.3    Klimasauskas, S.4    Butkus, V.5
  • 5
    • 0026468485 scopus 로고
    • Cloning and sequence analysis of the genes coding for Eco57I type IV restriction-modification enzymes
    • Janulaitis,A., Vaisvila,R., Timinskas,A., Klimasauskas,S. and Butkus,V. (1992) Cloning and sequence analysis of the genes coding for Eco57I type IV restriction-modification enzymes. Nucleic Acids Res., 20, 6051-6056.
    • (1992) Nucleic Acids Res , vol.20 , pp. 6051-6056
    • Janulaitis, A.1    Vaisvila, R.2    Timinskas, A.3    Klimasauskas, S.4    Butkus, V.5
  • 6
    • 0024604147 scopus 로고
    • Predictive motifs derived from cytosine methyltransferases
    • Posfai,J., Bhagwat,A.S., Posfai,G. and Roberts,R.J. (1989) Predictive motifs derived from cytosine methyltransferases. Nucleic Acids Res. 17, 2421-2435.
    • (1989) Nucleic Acids Res , vol.17 , pp. 2421-2435
    • Posfai, J.1    Bhagwat, A.S.2    Posfai, G.3    Roberts, R.J.4
  • 7
    • 0028841409 scopus 로고
    • Structure-guided analysis reveals nine sequence motifs conserved among DNA amino-methyl-transferases, and suggests a catalytic mechanism for these enzymes
    • Malone,T., Blumenthal,R.M. and Cheng,X. (1995) Structure-guided analysis reveals nine sequence motifs conserved among DNA amino-methyl-transferases, and suggests a catalytic mechanism for these enzymes. J. Mol. Biol., 253, 618-632.
    • (1995) J. Mol. Biol , vol.253 , pp. 618-632
    • Malone, T.1    Blumenthal, R.M.2    Cheng, X.3
  • 9
    • 0141954129 scopus 로고    scopus 로고
    • Crystallographic and bioinformatic studies on restriction endonucleases: Inference of evolutionary relationships in the 'midnight zone' of homology
    • Bujnicki,J.M. (2003) Crystallographic and bioinformatic studies on restriction endonucleases: Inference of evolutionary relationships in the 'midnight zone' of homology. Curr. Protein Pept. Sci., 4 327-337.
    • (2003) Curr. Protein Pept. Sci , vol.4 , pp. 327-337
    • Bujnicki, J.M.1
  • 10
    • 13844316471 scopus 로고    scopus 로고
    • Inference of relationships in the 'twilight zone' of homology using a combination of bioinformatics and site-directed mutagenesis: A case study of restriction endonucleases Bsp6I and PvuII
    • Pawlak,S.D., Radlinska,M., Chmiel,A.A., Bujnicki,J.M. and Skowronek,K.J. (2005) Inference of relationships in the 'twilight zone' of homology using a combination of bioinformatics and site-directed mutagenesis: A case study of restriction endonucleases Bsp6I and PvuII. Nucleic Acids Res., 33, 661-671.
    • (2005) Nucleic Acids Res , vol.33 , pp. 661-671
    • Pawlak, S.D.1    Radlinska, M.2    Chmiel, A.A.3    Bujnicki, J.M.4    Skowronek, K.J.5
  • 11
    • 21344435463 scopus 로고    scopus 로고
    • Identification of novel restriction endonuclease-like fold families among hypothetical proteins
    • Kinch,L.N., Ginalski,K., Rychlewski,L. and Grishin,N.V. (2005) Identification of novel restriction endonuclease-like fold families among hypothetical proteins. Nucleic Acids Res., 33, 3598-3598.
    • (2005) Nucleic Acids Res , vol.33 , pp. 3598-3598
    • Kinch, L.N.1    Ginalski, K.2    Rychlewski, L.3    Grishin, N.V.4
  • 12
    • 56649117672 scopus 로고    scopus 로고
    • MmeI: A minimal type II restriction-modification system that only modifies one DNA strand for host protection
    • Morgan,R.D., Bhatia,T.K., Lovasco,L. and Davis,T.B. (2008) MmeI: A minimal type II restriction-modification system that only modifies one DNA strand for host protection. Nucleic Acids Res, 36, 6558-6570.
    • (2008) Nucleic Acids Res , vol.36 , pp. 6558-6570
    • Morgan, R.D.1    Bhatia, T.K.2    Lovasco, L.3    Davis, T.B.4
  • 14
    • 0025360667 scopus 로고
    • Construction of an efficient overproducer clone of HinfI restriction endonuclease using the polymerase chain reaction
    • Skoglund,C.M., Smith,H.O. and Chandrasegaran,S. (1990) Construction of an efficient overproducer clone of HinfI restriction endonuclease using the polymerase chain reaction. Gene, 88, 1-5.
    • (1990) Gene , vol.88 , pp. 1-5
    • Skoglund, C.M.1    Smith, H.O.2    Chandrasegaran, S.3
  • 16
    • 3142773244 scopus 로고    scopus 로고
    • The isolation of strand-specific nicking endonucleases from a randomized SapI expression library
    • Samuelson,J.C., Zhu,Z. and Xu,S.Y. (2004) The isolation of strand-specific nicking endonucleases from a randomized SapI expression library. Nucleic Acids Res., 32, 3661-3671.
    • (2004) Nucleic Acids Res , vol.32 , pp. 3661-3671
    • Samuelson, J.C.1    Zhu, Z.2    Xu, S.Y.3
  • 17
    • 0004077284 scopus 로고
    • Screening for and characterizing restriction endonucleases
    • Setlow,J.K. and Hollaender,A, eds, Plenum Press, New York, pp
    • Schildkraut,I. (1984) Screening for and characterizing restriction endonucleases. In Setlow,J.K. and Hollaender,A. (eds), Genetic Engineering, Principles and Methods. Vol. 6, Plenum Press, New York, pp. 117-140.
    • (1984) Genetic Engineering, Principles and Methods , vol.6 , pp. 117-140
    • Schildkraut, I.1
  • 18
    • 0034595822 scopus 로고    scopus 로고
    • Purification of the novel endonuclease, Hpy188I, and cloning of its restriction-modification genes reveal evidence of its horizontal transfer to the Helicobacter pylori genome
    • Xu,Q., Stickel,S., Roberts,R.J., Blaser,M.J. and Morgan,R.D. (2000) Purification of the novel endonuclease, Hpy188I, and cloning of its restriction-modification genes reveal evidence of its horizontal transfer to the Helicobacter pylori genome. J. Biol. Chem., 275, 17086-17093.
    • (2000) J. Biol. Chem , vol.275 , pp. 17086-17093
    • Xu, Q.1    Stickel, S.2    Roberts, R.J.3    Blaser, M.J.4    Morgan, R.D.5
  • 19
    • 0019325434 scopus 로고
    • The specific non-symmetrical sequence recognized by restriction endonuclease MboII
    • Brown,N.L., Hutchison,C.A. III and Smith,M. (1980) The specific non-symmetrical sequence recognized by restriction endonuclease MboII. J. Mol. Biol., 140, 143-148.
    • (1980) J. Mol. Biol , vol.140 , pp. 143-148
    • Brown, N.L.1    Hutchison III, C.A.2    Smith, M.3
  • 20
    • 0034284411 scopus 로고    scopus 로고
    • Functional analysis of putative restriction-modification system genes in the Helicobacter pylori J99 genome
    • Kong,H., Lin,L.F., Porter,N., Stickel,S., Byrd,D., Posfai,J. and Roberts,R.J. (2000) Functional analysis of putative restriction-modification system genes in the Helicobacter pylori J99 genome. Nucleic Acids Res., 28, 3216-3223.
    • (2000) Nucleic Acids Res , vol.28 , pp. 3216-3223
    • Kong, H.1    Lin, L.F.2    Porter, N.3    Stickel, S.4    Byrd, D.5    Posfai, J.6    Roberts, R.J.7
  • 21
    • 34248532415 scopus 로고    scopus 로고
    • PROMALS: Towards accurate multiple sequence alignments of distantly related proteins
    • Pei,J. and Grishin,N.V. (2007) PROMALS: Towards accurate multiple sequence alignments of distantly related proteins. Bioinformatics, 23, 802-808.
    • (2007) Bioinformatics , vol.23 , pp. 802-808
    • Pei, J.1    Grishin, N.V.2
  • 23
    • 38549141229 scopus 로고    scopus 로고
    • Exploring the extremes of sequence/structure space with ensemble fold recognition in the program Phyre
    • Bennett-Lovsey,R.M., Herbert,A.D., Sternberg,M.J. and Kelley,L.A. (2008) Exploring the extremes of sequence/structure space with ensemble fold recognition in the program Phyre. Proteins, 70, 611-625.
    • (2008) Proteins , vol.70 , pp. 611-625
    • Bennett-Lovsey, R.M.1    Herbert, A.D.2    Sternberg, M.J.3    Kelley, L.A.4
  • 24
    • 0037040271 scopus 로고    scopus 로고
    • Many type IIs restriction endonucleases interact with two recognition sites before cleaving DNA
    • Bath,A.J., Milsom,S.E., Gormley,N.A. and Halford,S.E. (2002) Many type IIs restriction endonucleases interact with two recognition sites before cleaving DNA. J. Biol. Chem., 277, 4024-4033.
    • (2002) J. Biol. Chem , vol.277 , pp. 4024-4033
    • Bath, A.J.1    Milsom, S.E.2    Gormley, N.A.3    Halford, S.E.4
  • 25
    • 0035902832 scopus 로고    scopus 로고
    • DNA cleavage reactions by type II restriction enzymes that require two copies of their recognition sites
    • Embleton,M.L., Siksnys,V. and Halford,S.E. (2001) DNA cleavage reactions by type II restriction enzymes that require two copies of their recognition sites. J. Mol. Biol., 311, 503-514.
    • (2001) J. Mol. Biol , vol.311 , pp. 503-514
    • Embleton, M.L.1    Siksnys, V.2    Halford, S.E.3
  • 26
    • 0035946911 scopus 로고    scopus 로고
    • FokI requires two specific DNA sites for cleavage
    • Vanamee,E.S., Santagata,S. and Aggarwal,A.K. (2001) FokI requires two specific DNA sites for cleavage. J. Mol. Biol., 309, 69-78.
    • (2001) J. Mol. Biol , vol.309 , pp. 69-78
    • Vanamee, E.S.1    Santagata, S.2    Aggarwal, A.K.3
  • 27
    • 58149347788 scopus 로고    scopus 로고
    • Functional analysis of MmeI from methanol utilizer Methylophilus methylotrophus, a subtype IIC restriction-modification enzyme related to type I enzymes
    • Nakonieczna,J., Kaczorowski,T., Obarska-Kosinska,A. and Bujnicki,J.M. (2009) Functional analysis of MmeI from methanol utilizer Methylophilus methylotrophus, a subtype IIC restriction-modification enzyme related to type I enzymes. Appl. Environ. Microbiol., 75 212-223.
    • (2009) Appl. Environ. Microbiol , vol.75 , pp. 212-223
    • Nakonieczna, J.1    Kaczorowski, T.2    Obarska-Kosinska, A.3    Bujnicki, J.M.4
  • 28
    • 14744267674 scopus 로고    scopus 로고
    • Crystal structure of DNA sequence specificity subunit of a type I restriction-modification enzyme and its functional implications
    • Kim,J.S., DeGiovanni,A., Jancarik,J., Adams,P.D., Yokota,H., Kim,R. and Kim,S.H. (2005) Crystal structure of DNA sequence specificity subunit of a type I restriction-modification enzyme and its functional implications. Proc. Natl Acad. Sci. USA, 102, 3248-3253.
    • (2005) Proc. Natl Acad. Sci. USA , vol.102 , pp. 3248-3253
    • Kim, J.S.1    DeGiovanni, A.2    Jancarik, J.3    Adams, P.D.4    Yokota, H.5    Kim, R.6    Kim, S.H.7
  • 29
    • 0021770791 scopus 로고
    • A second type II restriction endonuclease from Thermus aquaticus with an unusual sequence specificity
    • Barker,D., Hoff,M., Oliphant,A. and White,R. (1984) A second type II restriction endonuclease from Thermus aquaticus with an unusual sequence specificity. Nucleic Acids Res., 12, 5567-5581.
    • (1984) Nucleic Acids Res , vol.12 , pp. 5567-5581
    • Barker, D.1    Hoff, M.2    Oliphant, A.3    White, R.4
  • 30
    • 0019322447 scopus 로고
    • A second site specific endonuclease from Thermus thermophilus 111, Tth111II
    • Shinomiya,T., Kobayashi,M. and Sato,S. (1980) A second site specific endonuclease from Thermus thermophilus 111, Tth111II. Nucleic Acids Res., 8, 3275-3285.
    • (1980) Nucleic Acids Res , vol.8 , pp. 3275-3285
    • Shinomiya, T.1    Kobayashi, M.2    Sato, S.3
  • 31
    • 0242285772 scopus 로고    scopus 로고
    • A new Thermus sp. class-IIS enzyme sub-family: Isolation of a 'twin' endonuclease TspDTI with a novel specificity 5′-ATGAA(N11/9)-3′, related to TspGWI, TaqII and Tth111II
    • Skowron,P.M., Majewski,J., Zylicz-Stachula,A., Rutkowska,S.M., Jaworowska,I. and Harasimowicz-Slowinska,R.I. (2003) A new Thermus sp. class-IIS enzyme sub-family: Isolation of a 'twin' endonuclease TspDTI with a novel specificity 5′-ATGAA(N11/9)-3′, related to TspGWI, TaqII and Tth111II. Nucleic Acids Res., 31, e74-e74.
    • (2003) Nucleic Acids Res , vol.31
    • Skowron, P.M.1    Majewski, J.2    Zylicz-Stachula, A.3    Rutkowska, S.M.4    Jaworowska, I.5    Harasimowicz-Slowinska, R.I.6
  • 32
    • 69849113045 scopus 로고    scopus 로고
    • Kong,H. (1998) Characterization of a new restriction-modification system, the BcgI system of Bacillus coagulans. Ph.D. Thesis. Boston University, pp. 1-130.
    • Kong,H. (1998) Characterization of a new restriction-modification system, the BcgI system of Bacillus coagulans. Ph.D. Thesis. Boston University, pp. 1-130.
  • 35
    • 33748867012 scopus 로고    scopus 로고
    • Phylogenomic analysis of the GIY-YIG nuclease superfamily
    • Dunin-Horkawicz,S., Feder,M. and Bujnicki,J.M. (2006) Phylogenomic analysis of the GIY-YIG nuclease superfamily. BMC Genomics, 7 98-98.
    • (2006) BMC Genomics , vol.7 , pp. 98-98
    • Dunin-Horkawicz, S.1    Feder, M.2    Bujnicki, J.M.3
  • 36
    • 0025886886 scopus 로고
    • Mutations that confer de novo activity upon a maintenance methyltransferase
    • Kelleher,J.E., Daniel,A.S. and Murray,N.E. (1991) Mutations that confer de novo activity upon a maintenance methyltransferase. J. Mol. Biol. 221, 431-440.
    • (1991) J. Mol. Biol , vol.221 , pp. 431-440
    • Kelleher, J.E.1    Daniel, A.S.2    Murray, N.E.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.