-
1
-
-
33746501942
-
Pathogenesis of Helicobacter pylori infection
-
Kusters,J.G., van Vliet,A.H. and Kuipers,E.J. (2006) Pathogenesis of Helicobacter pylori infection. Clin. Microbiol. Rev., 19, 449-490.
-
(2006)
Clin. Microbiol. Rev
, vol.19
, pp. 449-490
-
-
Kusters, J.G.1
van Vliet, A.H.2
Kuipers, E.J.3
-
2
-
-
0033552961
-
Genomic-sequence comparison of two unrelated isolates of the human gastric pathogen Helicobacter pylori
-
Alm,R.A., Ling,L.S., Moir,D.T., King,B.L., Brown,E.D., Doig,P.C., Smith,D.R., Noonan,B., Guild,B.C., deJonge,B.L. et al. (1999) Genomic-sequence comparison of two unrelated isolates of the human gastric pathogen Helicobacter pylori. Nature, 397, 176-180.
-
(1999)
Nature
, vol.397
, pp. 176-180
-
-
Alm, R.A.1
Ling, L.S.2
Moir, D.T.3
King, B.L.4
Brown, E.D.5
Doig, P.C.6
Smith, D.R.7
Noonan, B.8
Guild, B.C.9
deJonge, B.L.10
-
3
-
-
33745625645
-
The complete genome sequence of a chronic atrophic gastritis Helicobacter pylori strain: Evolution during disease progression
-
Oh,J.D., Kling-Backhed,H., Giannakis,M., Xu,J., Fulton,R.S., Fulton,L.A., Cordum,H.S., Wang,C., Elliott,G., Edwards,J. et al. (2006) The complete genome sequence of a chronic atrophic gastritis Helicobacter pylori strain: Evolution during disease progression. Proc. Natl Acad. Sci. USA, 103, 9999-10004.
-
(2006)
Proc. Natl Acad. Sci. USA
, vol.103
, pp. 9999-10004
-
-
Oh, J.D.1
Kling-Backhed, H.2
Giannakis, M.3
Xu, J.4
Fulton, R.S.5
Fulton, L.A.6
Cordum, H.S.7
Wang, C.8
Elliott, G.9
Edwards, J.10
-
4
-
-
0037389511
-
A nomenclature for restriction enzymes, DNA methyltransferases, homing endonucleases and their genes
-
Roberts,R.J., Belfort,M., Bestor,T., Bhagwat,A.S., Bickle,T.A., Bitinaite,J., Blumenthal,R.M., Degtyarev,S., Dryden,D.T., Dybvig,K. et al. (2003) A nomenclature for restriction enzymes, DNA methyltransferases, homing endonucleases and their genes. Nucleic Acids Res., 31, 1805-1812.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 1805-1812
-
-
Roberts, R.J.1
Belfort, M.2
Bestor, T.3
Bhagwat, A.S.4
Bickle, T.A.5
Bitinaite, J.6
Blumenthal, R.M.7
Degtyarev, S.8
Dryden, D.T.9
Dybvig, K.10
-
5
-
-
33846078626
-
REBASE - enzymes and genes for DNA restriction and modification
-
Roberts,R.J., Vincze,T., Posfai,J. and Macelis,D. (2007) REBASE - enzymes and genes for DNA restriction and modification. Nucleic Acids Res., 35, D269-D270.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Roberts, R.J.1
Vincze, T.2
Posfai, J.3
Macelis, D.4
-
6
-
-
0035956977
-
Comparative genomics of the restriction-modification systems in Helicobacter pylori
-
Lin,L.F., Posfai,J., Roberts,R.J. and Kong,H. (2001) Comparative genomics of the restriction-modification systems in Helicobacter pylori. Proc. Natl Acad. Sci. USA, 98, 2740-2745.
-
(2001)
Proc. Natl Acad. Sci. USA
, vol.98
, pp. 2740-2745
-
-
Lin, L.F.1
Posfai, J.2
Roberts, R.J.3
Kong, H.4
-
7
-
-
0034707207
-
Diversity of restriction-modification gene homologues in Helicobacter pylori
-
Nobusato,A., Uchiyama,I. and Kobayashi,I. (2000) Diversity of restriction-modification gene homologues in Helicobacter pylori. Gene 259, 89-98.
-
(2000)
Gene
, vol.259
, pp. 89-98
-
-
Nobusato, A.1
Uchiyama, I.2
Kobayashi, I.3
-
8
-
-
22544464152
-
The biology of restriction and anti-restriction
-
Tock,M.R. and Dryden,D.T. (2005) The biology of restriction and anti-restriction. Curr. Opin. Microbiol., 8, 466-472.
-
(2005)
Curr. Opin. Microbiol
, vol.8
, pp. 466-472
-
-
Tock, M.R.1
Dryden, D.T.2
-
9
-
-
0034607641
-
Characteristics of Helicobacter pylori natural transformation
-
Israel,D.A., Lou,A.S. and Blaser,M.J. (2000) Characteristics of Helicobacter pylori natural transformation. FEMS Microbiol. Lett. 186, 275-280.
-
(2000)
FEMS Microbiol. Lett
, vol.186
, pp. 275-280
-
-
Israel, D.A.1
Lou, A.S.2
Blaser, M.J.3
-
10
-
-
0242353167
-
Maintenance of species identity and controlling speciation of bacteria: A new function for restriction/modification systems?
-
Jeltsch,A. (2003) Maintenance of species identity and controlling speciation of bacteria: A new function for restriction/modification systems? Gene, 317, 13-16.
-
(2003)
Gene
, vol.317
, pp. 13-16
-
-
Jeltsch, A.1
-
11
-
-
0022797346
-
A possible role for DNA restriction in bacterial evolution
-
Price,C. and Bickle,T.A. (1986) A possible role for DNA restriction in bacterial evolution. Microbiol. Sci., 3, 296-299.
-
(1986)
Microbiol. Sci
, vol.3
, pp. 296-299
-
-
Price, C.1
Bickle, T.A.2
-
12
-
-
0028901038
-
Selfish behavior of restriction-modification systems
-
Naito,T., Kusano,K. and Kobayashi,I. (1995) Selfish behavior of restriction-modification systems. Science, 267, 897-899.
-
(1995)
Science
, vol.267
, pp. 897-899
-
-
Naito, T.1
Kusano, K.2
Kobayashi, I.3
-
13
-
-
33644774549
-
Genetic addiction: Selfish gene
-
Mochizuki,A., Yahara,K., Kobayashi,I. and Iwasa,Y. (2006) Genetic addiction: Selfish gene. Genetics, 172, 1309-1323.
-
(2006)
Genetics
, vol.172
, pp. 1309-1323
-
-
Mochizuki, A.1
Yahara, K.2
Kobayashi, I.3
Iwasa, Y.4
-
14
-
-
42049092774
-
Clocks and switches: Bacterial gene regulation by DNA adenine methylation
-
Low,D.A. and Casadesus,J. (2008) Clocks and switches: Bacterial gene regulation by DNA adenine methylation. Curr. Opin. Microbiol., 11, 106-112.
-
(2008)
Curr. Opin. Microbiol
, vol.11
, pp. 106-112
-
-
Low, D.A.1
Casadesus, J.2
-
15
-
-
33646008874
-
N6-methyl-adenine: An epigenetic signal for DNA-protein interactions
-
Wion,D. and Casadesus,J. (2006) N6-methyl-adenine: An epigenetic signal for DNA-protein interactions. Nat. Rev. Microbiol., 4, 183-192.
-
(2006)
Nat. Rev. Microbiol
, vol.4
, pp. 183-192
-
-
Wion, D.1
Casadesus, J.2
-
16
-
-
34249276425
-
-
Gressmann,H., Linz,B., Ghai,R., Pleissner,K.P., Schlapbach,R., Yamaoka,Y., Kraft,C., Suerbaum,S., Meyer,T.F. and Achtman,M. (2005) Gain and loss of multiple genes during the evolution of Helicobacter pylori. PLoS Genet., 1, e43.
-
Gressmann,H., Linz,B., Ghai,R., Pleissner,K.P., Schlapbach,R., Yamaoka,Y., Kraft,C., Suerbaum,S., Meyer,T.F. and Achtman,M. (2005) Gain and loss of multiple genes during the evolution of Helicobacter pylori. PLoS Genet., 1, e43.
-
-
-
-
17
-
-
33644849698
-
Re-examining the role and random nature of phase variation
-
van der Woude,M.W. (2006) Re-examining the role and random nature of phase variation. FEMS Microbiol. Lett., 254, 190-197.
-
(2006)
FEMS Microbiol. Lett
, vol.254
, pp. 190-197
-
-
van der Woude, M.W.1
-
18
-
-
0036889446
-
Transcriptional phase variation of a type III restriction-modification system in Helicobacter pylori
-
de Vries,N., Duinsbergen,D., Kuipers,E.J., Pot,R.G., Wiesenekker,P., Penn,C.W., van Vliet,A.H., Vandenbroucke-Grauls,C.M. and Kusters,J.G. (2002) Transcriptional phase variation of a type III restriction-modification system in Helicobacter pylori. J. Bacteriol. 184, 6615-6623.
-
(2002)
J. Bacteriol
, vol.184
, pp. 6615-6623
-
-
de Vries, N.1
Duinsbergen, D.2
Kuipers, E.J.3
Pot, R.G.4
Wiesenekker, P.5
Penn, C.W.6
van Vliet, A.H.7
Vandenbroucke-Grauls, C.M.8
Kusters, J.G.9
-
19
-
-
33846849047
-
Identification of Helicobacter pylori genes that contribute to stomach colonization
-
Baldwin,D.N., Shepherd,B., Kraemer,P., Hall,M.K., Sycuro,L.K., Pinto-Santini,D.M. and Salama,N.R. (2007) Identification of Helicobacter pylori genes that contribute to stomach colonization. Infect. Immun., 75, 1005-1016.
-
(2007)
Infect. Immun
, vol.75
, pp. 1005-1016
-
-
Baldwin, D.N.1
Shepherd, B.2
Kraemer, P.3
Hall, M.K.4
Sycuro, L.K.5
Pinto-Santini, D.M.6
Salama, N.R.7
-
20
-
-
0031738385
-
Adherence to gastric epithelial cells induces expression of a Helicobacter pylori gene, iceA, that is associated with clinical outcome
-
Peek,R.M. Jr., Thompson,S.A., Donahue,J.P., Tham,K.T., Atherton,J.C., Blaser,M.J. and Miller,G.G. (1998) Adherence to gastric epithelial cells induces expression of a Helicobacter pylori gene, iceA, that is associated with clinical outcome. Proc. Assoc. Am. Physicians, 110, 531-544.
-
(1998)
Proc. Assoc. Am. Physicians
, vol.110
, pp. 531-544
-
-
Peek Jr., R.M.1
Thompson, S.A.2
Donahue, J.P.3
Tham, K.T.4
Atherton, J.C.5
Blaser, M.J.6
Miller, G.G.7
-
21
-
-
1642565191
-
Isolation and characterization of a HpyC1I restriction-modification system in Helicobacter pylori
-
Lin,T.L., Shun,C.T., Chang,K.C. and Wang,J.T. (2004) Isolation and characterization of a HpyC1I restriction-modification system in Helicobacter pylori. J. Biol. Chem., 279, 11156-11162.
-
(2004)
J. Biol. Chem
, vol.279
, pp. 11156-11162
-
-
Lin, T.L.1
Shun, C.T.2
Chang, K.C.3
Wang, J.T.4
-
22
-
-
37449011458
-
Functional analysis of the M.HpyAIV DNA methyltransferase of Helicobacter pylori
-
Skoglund,A., Bjorkholm,B., Nilsson,C., Andersson,A.F., Jernberg,C., Schirwitz,K., Enroth,C., Krabbe,M. and Engstrand,L. (2007) Functional analysis of the M.HpyAIV DNA methyltransferase of Helicobacter pylori. J. Bacteriol., 189, 8914-8921.
-
(2007)
J. Bacteriol
, vol.189
, pp. 8914-8921
-
-
Skoglund, A.1
Bjorkholm, B.2
Nilsson, C.3
Andersson, A.F.4
Jernberg, C.5
Schirwitz, K.6
Enroth, C.7
Krabbe, M.8
Engstrand, L.9
-
23
-
-
0003855149
-
-
John Wiley & Sons, New York
-
Ausubel, F., Brent, R., Kingston, R.E., Moore, D.D., Seidman, J.G., Smith, J.A. and Struhl, K. (1997) Short Protocols in Molecular Biology. John Wiley & Sons, New York.
-
(1997)
Short Protocols in Molecular Biology
-
-
Ausubel, F.1
Brent, R.2
Kingston, R.E.3
Moore, D.D.4
Seidman, J.G.5
Smith, J.A.6
Struhl, K.7
-
24
-
-
47749093168
-
Helicobacter pylori AddAB helicase-nuclease and RecA promote recombination-related DNA repair and survival during stomach colonization
-
Amundsen,S.K., Fero,J., Hansen,L.M., Cromie,G.A., Solnick,J.V., Smith,G.R. and Salama,N.R. (2008) Helicobacter pylori AddAB helicase-nuclease and RecA promote recombination-related DNA repair and survival during stomach colonization. Mol. Microbiol., 69, 994-1007.
-
(2008)
Mol. Microbiol
, vol.69
, pp. 994-1007
-
-
Amundsen, S.K.1
Fero, J.2
Hansen, L.M.3
Cromie, G.A.4
Solnick, J.V.5
Smith, G.R.6
Salama, N.R.7
-
25
-
-
0027244956
-
Nonpolar mutagenesis of the ipa genes de.nes IpaB, IpaC, and IpaD as effectors of Shigella flexneri entry into epithelial cells
-
Menard,R., Sansonetti,P.J. and Parsot,C. (1993) Nonpolar mutagenesis of the ipa genes de.nes IpaB, IpaC, and IpaD as effectors of Shigella flexneri entry into epithelial cells. J. Bacteriol., 175, 5899-5906.
-
(1993)
J. Bacteriol
, vol.175
, pp. 5899-5906
-
-
Menard, R.1
Sansonetti, P.J.2
Parsot, C.3
-
26
-
-
0031001363
-
Introduction of unmarked mutations in the Helicobacter pylori vacA gene with a sucrose sensitivity marker
-
Copass,M., Grandi,G. and Rappuoli,R. (1997) Introduction of unmarked mutations in the Helicobacter pylori vacA gene with a sucrose sensitivity marker. Infect Immun., 65, 1949-1952.
-
(1997)
Infect Immun
, vol.65
, pp. 1949-1952
-
-
Copass, M.1
Grandi, G.2
Rappuoli, R.3
-
27
-
-
0027439286
-
Transformation of Helicobacter pylori by chromosomal metronidazole resistance and by a plasmid with a selectable chloramphenicol resistance marker
-
Wang,Y., Roos,K.P. and Taylor,D.E. (1993) Transformation of Helicobacter pylori by chromosomal metronidazole resistance and by a plasmid with a selectable chloramphenicol resistance marker. J. General Microbiol., 139, 2485-2493.
-
(1993)
J. General Microbiol
, vol.139
, pp. 2485-2493
-
-
Wang, Y.1
Roos, K.P.2
Taylor, D.E.3
-
28
-
-
0024594736
-
Quantitative evaluation of Escherichia coli host strains for tolerance to cytosine methylation in plasmid and phage recombinants
-
Woodcock,D.M., Crowther,P.J., Doherty,J., Jefferson,S., DeCruz,E., Noyer-Weidner,M., Smith,S.S., Michael,M.Z. and Graham,M.W. (1989) Quantitative evaluation of Escherichia coli host strains for tolerance to cytosine methylation in plasmid and phage recombinants. Nucleic Acids Res., 17, 3469-3478.
-
(1989)
Nucleic Acids Res
, vol.17
, pp. 3469-3478
-
-
Woodcock, D.M.1
Crowther, P.J.2
Doherty, J.3
Jefferson, S.4
DeCruz, E.5
Noyer-Weidner, M.6
Smith, S.S.7
Michael, M.Z.8
Graham, M.W.9
-
29
-
-
0034284411
-
Functional analysis of putative restriction-modification system genes in the Helicobacter pylori J99 genome
-
Kong,H., Lin,L.F., Porter,N., Stickel,S., Byrd,D., Posfai,J. and Roberts,R.J. (2000) Functional analysis of putative restriction-modification system genes in the Helicobacter pylori J99 genome. Nucleic Acids Res., 28, 3216-3223.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 3216-3223
-
-
Kong, H.1
Lin, L.F.2
Porter, N.3
Stickel, S.4
Byrd, D.5
Posfai, J.6
Roberts, R.J.7
-
30
-
-
0035166979
-
The comprehensive microbial resource
-
Peterson,J.D., Umayam,L.A., Dickinson,T., Hickey,E.K. and White,O. (2001) The comprehensive microbial resource. Nucleic Acids Res., 29, 123-125.
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 123-125
-
-
Peterson, J.D.1
Umayam, L.A.2
Dickinson, T.3
Hickey, E.K.4
White, O.5
-
31
-
-
38549141229
-
Exploring the extremes of sequence/structure space with ensemble fold recognition in the program Phyre
-
Bennett-Lovsey,R.M., Herbert,A.D., Sternberg,M.J. and Kelley,L.A. (2008) Exploring the extremes of sequence/structure space with ensemble fold recognition in the program Phyre. Proteins, 70, 611-625.
-
(2008)
Proteins
, vol.70
, pp. 611-625
-
-
Bennett-Lovsey, R.M.1
Herbert, A.D.2
Sternberg, M.J.3
Kelley, L.A.4
-
32
-
-
36448991500
-
-
Larkin,M.A, Blackshields,G, Brown,N.P, Chenna,R, McGettigan,P.A, McWilliam,H, Valentin,F, Wallace,I.M, Wilm,A, Lopez,R. et al, 2007 Clustal W and Clustal X version 2.0. Bioinformatics, 23 2947-2948
-
Larkin,M.A., Blackshields,G., Brown,N.P., Chenna,R., McGettigan,P.A., McWilliam,H., Valentin,F., Wallace,I.M., Wilm,A., Lopez,R. et al. (2007) Clustal W and Clustal X version 2.0. Bioinformatics, 23 2947-2948.
-
-
-
-
33
-
-
57149095153
-
-
Available at
-
DeLano, W.L. (2002) The PyMOL Molecular Graphics System. Available at http://www.pymol.org.
-
(2002)
-
-
DeLano, W.L.1
-
34
-
-
0028841409
-
Structure-guided analysis reveals nine sequence motifs conserved among DNA amino-methyltransferases, and suggests a catalytic mechanism for these enzymes
-
Malone,T., Blumenthal,R.M. and Cheng,X. (1995) Structure-guided analysis reveals nine sequence motifs conserved among DNA amino-methyltransferases, and suggests a catalytic mechanism for these enzymes. J. Mol. Biol., 253, 618-632.
-
(1995)
J. Mol. Biol
, vol.253
, pp. 618-632
-
-
Malone, T.1
Blumenthal, R.M.2
Cheng, X.3
-
35
-
-
27144543021
-
Discovery of a novel restriction endonuclease by genome comparison and application of a wheat-germ-based cell-free translation assay: PabI (5'-GTA/C) from the hyperthermophilic archaeon Pyrococcus abyssi
-
Ishikawa,K., Watanabe,M., Kuroita,T., Uchiyama,I., Bujnicki,J.M., Kawakami,B., Tanokura,M. and Kobayashi,I. (2005) Discovery of a novel restriction endonuclease by genome comparison and application of a wheat-germ-based cell-free translation assay: PabI (5'-GTA/C) from the hyperthermophilic archaeon Pyrococcus abyssi. Nucleic Acids Res., 33, e112.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Ishikawa, K.1
Watanabe, M.2
Kuroita, T.3
Uchiyama, I.4
Bujnicki, J.M.5
Kawakami, B.6
Tanokura, M.7
Kobayashi, I.8
-
36
-
-
0035883519
-
Behavior of restriction-modification systems as selfish mobile elements and their impact on genome evolution
-
Kobayashi,I. (2001) Behavior of restriction-modification systems as selfish mobile elements and their impact on genome evolution. Nucleic Acids Res., 29, 3742-3756.
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 3742-3756
-
-
Kobayashi, I.1
-
37
-
-
0033812744
-
Restriction-modification system differences in Helicobacter pylori are a barrier to interstrain plasmid transfer
-
Ando,T., Xu,Q., Torres,M., Kusugami,K., Israel,D.A. and Blaser,M.J. (2000) Restriction-modification system differences in Helicobacter pylori are a barrier to interstrain plasmid transfer. Mol. Microbiol., 37, 1052-1065.
-
(2000)
Mol. Microbiol
, vol.37
, pp. 1052-1065
-
-
Ando, T.1
Xu, Q.2
Torres, M.3
Kusugami, K.4
Israel, D.A.5
Blaser, M.J.6
-
38
-
-
0037673304
-
Multiplication of a restriction-modification gene complex
-
Sadykov,M., Asami,Y., Niki,H., Handa,N., Itaya,M., Tanokura,M. and Kobayashi,I. (2003) Multiplication of a restriction-modification gene complex. Mol. Microbiol., 48, 417-427.
-
(2003)
Mol. Microbiol
, vol.48
, pp. 417-427
-
-
Sadykov, M.1
Asami, Y.2
Niki, H.3
Handa, N.4
Itaya, M.5
Tanokura, M.6
Kobayashi, I.7
-
39
-
-
0035004723
-
Experimental genome evolution: Large-scale genome rearrangements associated with resistance to replacement of a chromosomal restriction-modification gene complex
-
Handa,N., Nakayama,Y., Sadykov,M. and Kobayashi,I. (2001) Experimental genome evolution: Large-scale genome rearrangements associated with resistance to replacement of a chromosomal restriction-modification gene complex. Mol. Microbiol., 40, 932-940.
-
(2001)
Mol. Microbiol
, vol.40
, pp. 932-940
-
-
Handa, N.1
Nakayama, Y.2
Sadykov, M.3
Kobayashi, I.4
-
40
-
-
34247886142
-
Novel protein fold discovered in the PabI family of restriction enzymes
-
Miyazono,K., Watanabe,M., Kosinski,J., Ishikawa,K., Kamo,M., Sawasaki,T., Nagata,K., Bujnicki,J.M., Endo,Y., Tanokura,M. et al. (2007) Novel protein fold discovered in the PabI family of restriction enzymes. Nucleic Acids Res., 35, 1908-1918.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 1908-1918
-
-
Miyazono, K.1
Watanabe, M.2
Kosinski, J.3
Ishikawa, K.4
Kamo, M.5
Sawasaki, T.6
Nagata, K.7
Bujnicki, J.M.8
Endo, Y.9
Tanokura, M.10
-
41
-
-
0037115902
-
Helicobacter pylori interstrain restriction-modification diversity prevents genome subversion by chromosomal DNA from competing strains
-
Aras,R.A., Small,A.J., Ando,T. and Blaser,M.J. (2002) Helicobacter pylori interstrain restriction-modification diversity prevents genome subversion by chromosomal DNA from competing strains. Nucleic Acids Res., 30, 5391-5397.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 5391-5397
-
-
Aras, R.A.1
Small, A.J.2
Ando, T.3
Blaser, M.J.4
-
42
-
-
0036606135
-
Phenotypic and genotypic variation in methylases involved in type II restriction-modification systems in Helicobacter pylori
-
Takata,T., Aras,R., Tavakoli,D., Ando,T., Olivares,A.Z. and Blaser,M.J. (2002) Phenotypic and genotypic variation in methylases involved in type II restriction-modification systems in Helicobacter pylori. Nucleic Acids Res., 30, 2444-2452.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 2444-2452
-
-
Takata, T.1
Aras, R.2
Tavakoli, D.3
Ando, T.4
Olivares, A.Z.5
Blaser, M.J.6
-
43
-
-
34447520629
-
Genomic methylation: A tool for typing Helicobacter pylori isolates
-
Vale,F.F. and Vitor,J.M. (2007) Genomic methylation: A tool for typing Helicobacter pylori isolates. Appl. Environ. Microbiol., 73, 4243-4249.
-
(2007)
Appl. Environ. Microbiol
, vol.73
, pp. 4243-4249
-
-
Vale, F.F.1
Vitor, J.M.2
-
44
-
-
0035155797
-
Specificities of eleven different DNA methyltransferases of Helicobacter pylori strain 26695
-
Vitkute,J., Stankevicius,K., Tamulaitiene,G., Maneliene,Z., Timinskas,A., Berg,D.E. and Janulaitis,A. (2001) Specificities of eleven different DNA methyltransferases of Helicobacter pylori strain 26695. J. Bacteriol., 183, 443-450.
-
(2001)
J. Bacteriol
, vol.183
, pp. 443-450
-
-
Vitkute, J.1
Stankevicius, K.2
Tamulaitiene, G.3
Maneliene, Z.4
Timinskas, A.5
Berg, D.E.6
Janulaitis, A.7
-
45
-
-
0036842035
-
A DNA methyltransferase can protect the genome from postdisturbance attack by a restriction-modification gene complex
-
Takahashi,N., Naito,Y., Handa,N. and Kobayashi,I. (2002) A DNA methyltransferase can protect the genome from postdisturbance attack by a restriction-modification gene complex. J. Bacteriol., 184, 6100-6108.
-
(2002)
J. Bacteriol
, vol.184
, pp. 6100-6108
-
-
Takahashi, N.1
Naito, Y.2
Handa, N.3
Kobayashi, I.4
-
46
-
-
0035909914
-
Recombination and mutation during long-term gastric colonization by Helicobacter pylori: Estimates of clock rates, recombination size, and minimal age
-
Falush,D., Kraft,C., Taylor,N.S., Correa,P., Fox,J.G., Achtman,M. and Suerbaum,S. (2001) Recombination and mutation during long-term gastric colonization by Helicobacter pylori: Estimates of clock rates, recombination size, and minimal age. Proc. Natl Acad. Sci. USA, 98, 15056-15061.
-
(2001)
Proc. Natl Acad. Sci. USA
, vol.98
, pp. 15056-15061
-
-
Falush, D.1
Kraft, C.2
Taylor, N.S.3
Correa, P.4
Fox, J.G.5
Achtman, M.6
Suerbaum, S.7
-
47
-
-
33749246561
-
Epigenetic gene regulation in the bacterial world
-
Casadesus,J. and Low,D. (2006) Epigenetic gene regulation in the bacterial world. Microbiol. Mol. Biol. Rev., 70, 830-856.
-
(2006)
Microbiol. Mol. Biol. Rev
, vol.70
, pp. 830-856
-
-
Casadesus, J.1
Low, D.2
-
48
-
-
24344510265
-
Discordant 16S and 23S rRNA gene phylogenies for the genus Helicobacter: Implications for phylogenetic inference and systematics
-
Dewhirst,F.E., Shen,Z., Scimeca,M.S., Stokes,L.N., Boumenna,T., Chen,T., Paster,B.J. and Fox,J.G. (2005) Discordant 16S and 23S rRNA gene phylogenies for the genus Helicobacter: Implications for phylogenetic inference and systematics. J. Bacteriol., 187, 6106-6118.
-
(2005)
J. Bacteriol
, vol.187
, pp. 6106-6118
-
-
Dewhirst, F.E.1
Shen, Z.2
Scimeca, M.S.3
Stokes, L.N.4
Boumenna, T.5
Chen, T.6
Paster, B.J.7
Fox, J.G.8
-
49
-
-
0033759525
-
Gene conversion drives within genic sequences: Concerted evolution of ribosomal RNA genes in bacteria and archaea
-
Liao,D. (2000) Gene conversion drives within genic sequences: Concerted evolution of ribosomal RNA genes in bacteria and archaea. J. Mol. Evol., 51, 305-317.
-
(2000)
J. Mol. Evol
, vol.51
, pp. 305-317
-
-
Liao, D.1
-
50
-
-
0026502711
-
Over- and under-representation of short oligonucleotides in DNA sequences
-
Burge,C., Campbell,A.M. and Karlin,S. (1992) Over- and under-representation of short oligonucleotides in DNA sequences. Proc. Natl Acad. Sci. USA, 89, 1358-1362.
-
(1992)
Proc. Natl Acad. Sci. USA
, vol.89
, pp. 1358-1362
-
-
Burge, C.1
Campbell, A.M.2
Karlin, S.3
-
51
-
-
0042388292
-
Analysis of bacterial RM-systems through genome-scale analysis and related taxonomy issues
-
Vandenbogaert,M. and Makeev,V. (2003) Analysis of bacterial RM-systems through genome-scale analysis and related taxonomy issues. In Silico Biol., 3, 127-143.
-
(2003)
In Silico Biol
, vol.3
, pp. 127-143
-
-
Vandenbogaert, M.1
Makeev, V.2
-
52
-
-
0037315735
-
Evolutionary implications of microbial genome tetranucleotide frequency biases
-
Pride,D.T., Meinersmann,R.J., Wassenaar,T.M. and Blaser,M.J. (2003) Evolutionary implications of microbial genome tetranucleotide frequency biases. Genome Res., 13, 145-158.
-
(2003)
Genome Res
, vol.13
, pp. 145-158
-
-
Pride, D.T.1
Meinersmann, R.J.2
Wassenaar, T.M.3
Blaser, M.J.4
-
53
-
-
0030740993
-
Avoidance of palindromic words in bacterial and archaeal genomes: A close connection with restriction enzymes
-
Gelfand,M.S. and Koonin,E.V. (1997) Avoidance of palindromic words in bacterial and archaeal genomes: A close connection with restriction enzymes. Nucleic Acids Res., 25, 2430-2439.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 2430-2439
-
-
Gelfand, M.S.1
Koonin, E.V.2
-
54
-
-
0037216594
-
Evolutionary history of hrgA, which replaces the restriction gene hpyIIIR in the hpyIII locus of Helicobacter pylori
-
Ando,T., Aras,R.A., Kusugami,K., Blaser,M.J. and Wassenaar,T.M. (2003) Evolutionary history of hrgA, which replaces the restriction gene hpyIIIR in the hpyIII locus of Helicobacter pylori. J. Bacteriol., 185, 295-301.
-
(2003)
J. Bacteriol
, vol.185
, pp. 295-301
-
-
Ando, T.1
Aras, R.A.2
Kusugami, K.3
Blaser, M.J.4
Wassenaar, T.M.5
-
55
-
-
0037089553
-
A Helicobacter pylori restriction endonuclease-replacing gene, hrgA, is associated with gastric cancer in Asian strains
-
Ando,T., Wassenaar,T.M., Peek,R.M. Jr., Aras,R.A., Tschumi,A.I., van Doorn,L.J., Kusugami,K. and Blaser,M.J. (2002) A Helicobacter pylori restriction endonuclease-replacing gene, hrgA, is associated with gastric cancer in Asian strains. Cancer Res., 62, 2385-2389.
-
(2002)
Cancer Res
, vol.62
, pp. 2385-2389
-
-
Ando, T.1
Wassenaar, T.M.2
Peek Jr., R.M.3
Aras, R.A.4
Tschumi, A.I.5
van Doorn, L.J.6
Kusugami, K.7
Blaser, M.J.8
-
56
-
-
0034603794
-
Genetic organization and heterogeneity of the iceA locus of Helicobacter pylori
-
Figueiredo,C., Quint,W.G., Sanna,R., Sablon,E., Donahue,J.P., Xu,Q., Miller,G.G., Peek,R.M. Jr., Blaser,M.J. and van Doorn,L.J. (2000) Genetic organization and heterogeneity of the iceA locus of Helicobacter pylori. Gene, 246, 59-68.
-
(2000)
Gene
, vol.246
, pp. 59-68
-
-
Figueiredo, C.1
Quint, W.G.2
Sanna, R.3
Sablon, E.4
Donahue, J.P.5
Xu, Q.6
Miller, G.G.7
Peek Jr., R.M.8
Blaser, M.J.9
van Doorn, L.J.10
-
57
-
-
0031750247
-
Clinical relevance of the cagA, vacA and iceA status of Helicobacter pylori
-
van Doorn,L.J., Figueiredo,C., Sanna,R., Plaisier,A., Schneeberger,P., de Boer,W. and Quint,W. (1998) Clinical relevance of the cagA, vacA and iceA status of Helicobacter pylori. Gastroenterology 115, 58-66.
-
(1998)
Gastroenterology
, vol.115
, pp. 58-66
-
-
van Doorn, L.J.1
Figueiredo, C.2
Sanna, R.3
Plaisier, A.4
Schneeberger, P.5
de Boer, W.6
Quint, W.7
-
59
-
-
0034707197
-
Comparison between Pyrococcus horikoshii and Pyrococcus abyssi genome sequences reveals linkage of restriction-modification genes with large genome polymorphisms
-
Chinen,A., Uchiyama,I. and Kobayashi,I. (2000) Comparison between Pyrococcus horikoshii and Pyrococcus abyssi genome sequences reveals linkage of restriction-modification genes with large genome polymorphisms. Gene, 259, 109-121.
-
(2000)
Gene
, vol.259
, pp. 109-121
-
-
Chinen, A.1
Uchiyama, I.2
Kobayashi, I.3
-
60
-
-
46349101158
-
Structural and evolutionary classification of Type II restriction enzymes based on theoretical and experimental analyses
-
Orlowski,J. and Bujnicki,J.M. (2008) Structural and evolutionary classification of Type II restriction enzymes based on theoretical and experimental analyses. Nucleic Acids Res., 36, 3552-3569.
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 3552-3569
-
-
Orlowski, J.1
Bujnicki, J.M.2
-
61
-
-
0030835739
-
The complete genome sequence of the gastric pathogen Helicobacter pylori
-
Tomb,J.F., White,O., Kerlavage,A.R., Clayton,R.A., Sutton,G.G., Fleischmann,R.D., Ketchum,K.A., Klenk,H.P., Gill,S., Dougherty,B.A. et al. (1997) The complete genome sequence of the gastric pathogen Helicobacter pylori. Nature, 388, 539-547.
-
(1997)
Nature
, vol.388
, pp. 539-547
-
-
Tomb, J.F.1
White, O.2
Kerlavage, A.R.3
Clayton, R.A.4
Sutton, G.G.5
Fleischmann, R.D.6
Ketchum, K.A.7
Klenk, H.P.8
Gill, S.9
Dougherty, B.A.10
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