-
3
-
-
11344287431
-
Molecular phylogenetics of restriction endonucleases
-
A. Pingoud Springer Berlin, Heidelberg, New York
-
J.M. Bujnicki Molecular phylogenetics of restriction endonucleases A. Pingoud Restriction Endonucleases 2004 Springer Berlin, Heidelberg, New York 63 93
-
(2004)
Restriction Endonucleases
, pp. 63-93
-
-
Bujnicki, J.M.1
-
4
-
-
0037134458
-
Evolutionary relationship between different subgroups of restriction endonucleases
-
V. Pingoud, E. Kubareva, G. Stengel, P. Friedhoff, J.M. Bujnicki, C. Urbanke, A. Sudina, and A. Pingoud Evolutionary relationship between different subgroups of restriction endonucleases J. Biol. Chem. 277 2002 14306 14314
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 14306-14314
-
-
Pingoud, V.1
Kubareva, E.2
Stengel, G.3
Friedhoff, P.4
Bujnicki, J.M.5
Urbanke, C.6
Sudina, A.7
Pingoud, A.8
-
5
-
-
0037042192
-
Alternative arrangements of catalytic residues at the active sites of restriction enzymes
-
G. Tamulaitis, A.S. Solonin, and V. Siksnys Alternative arrangements of catalytic residues at the active sites of restriction enzymes FEBS Lett. 518 2002 17 22
-
(2002)
FEBS Lett.
, vol.518
, pp. 17-22
-
-
Tamulaitis, G.1
Solonin, A.S.2
Siksnys, V.3
-
6
-
-
0037531222
-
PspGI, a type II restriction endonuclease from the extreme thermophile Pyrococcus sp.: Structural and functional studies to investigate an evolutionary relationship with several mesophilic restriction enzymes
-
V. Pingoud, C. Conzelmann, S. Kinzebach, A. Sudina, V. Metelev, E. Kubareva, J.M. Bujnicki, R. Lurz, G. Luder, S.Y. Xu, and A. Pingoud PspGI, a type II restriction endonuclease from the extreme thermophile Pyrococcus sp.: structural and functional studies to investigate an evolutionary relationship with several mesophilic restriction enzymes J. Mol. Biol. 329 2003 913 929
-
(2003)
J. Mol. Biol.
, vol.329
, pp. 913-929
-
-
Pingoud, V.1
Conzelmann, C.2
Kinzebach, S.3
Sudina, A.4
Metelev, V.5
Kubareva, E.6
Bujnicki, J.M.7
Lurz, R.8
Luder, G.9
Xu, S.Y.10
Pingoud, A.11
-
7
-
-
0024284313
-
EcoRII can be activated to cleave refractory DNA recognition sites
-
D.H. Kruger, G.J. Barcak, M. Reuter, and H.O. Smith EcoRII can be activated to cleave refractory DNA recognition sites Nucleic Acids Res. 16 1988 3997 4008
-
(1988)
Nucleic Acids Res.
, vol.16
, pp. 3997-4008
-
-
Kruger, D.H.1
Barcak, G.J.2
Reuter, M.3
Smith, H.O.4
-
8
-
-
0024520474
-
Oligonucleotide duplexes containing CC(A/T)GG stimulate cleavage of refractory DNA by restriction endonuclease EcoRII
-
C.-D. Pein, M. Reuter, D. Cech, and D.H. Kruger Oligonucleotide duplexes containing CC(A/T)GG stimulate cleavage of refractory DNA by restriction endonuclease EcoRII FEBS Lett. 245 1989 141 144
-
(1989)
FEBS Lett.
, vol.245
, pp. 141-144
-
-
Pein, C.-D.1
Reuter, M.2
Cech, D.3
Kruger, D.H.4
-
9
-
-
0025952247
-
Activation of restriction endonuclease EcoRII does not depend on the cleavage of stimulator DNA
-
C.-D. Pein, M. Reuter, A. Meisel, D. Cech, and D.H. Kruger Activation of restriction endonuclease EcoRII does not depend on the cleavage of stimulator DNA Nucleic Acids Res. 19 1991 5139 5142
-
(1991)
Nucleic Acids Res.
, vol.19
, pp. 5139-5142
-
-
Pein, C.-D.1
Reuter, M.2
Meisel, A.3
Cech, D.4
Kruger, D.H.5
-
10
-
-
0036792684
-
EcoRII: A restriction enzyme evolving recombination functions
-
M. Mucke, G. Grelle, J. Behlke, R. Kraft, D.H. Kruger, and M. Reuter EcoRII: a restriction enzyme evolving recombination functions Embo J. 21 2002 5262 5268
-
(2002)
Embo J.
, vol.21
, pp. 5262-5268
-
-
Mucke, M.1
Grelle, G.2
Behlke, J.3
Kraft, R.4
Kruger, D.H.5
Reuter, M.6
-
11
-
-
0345549459
-
Crystal structure of type IIE restriction endonuclease EcoRII reveals an autoinhibition mechanism by a novel effector-binding fold
-
X.E. Zhou, Y. Wang, M. Reuter, M. Mucke, D.H. Kruger, E.J. Meehan, and L. Chen Crystal structure of type IIE restriction endonuclease EcoRII reveals an autoinhibition mechanism by a novel effector-binding fold J. Mol. Biol. 335 2004 307 319
-
(2004)
J. Mol. Biol.
, vol.335
, pp. 307-319
-
-
Zhou, X.E.1
Wang, Y.2
Reuter, M.3
Mucke, M.4
Kruger, D.H.5
Meehan, E.J.6
Chen, L.7
-
12
-
-
0033520420
-
The Cfr10I restriction enzyme is functional as a tetramer
-
V. Siksnys, R. Skirgaila, G. Sasnauskas, C. Urbanke, D. Cherny, S. Grazulis, and R. Huber The Cfr10I restriction enzyme is functional as a tetramer J. Mol. Biol. 291 1999 1105 1118
-
(1999)
J. Mol. Biol.
, vol.291
, pp. 1105-1118
-
-
Siksnys, V.1
Skirgaila, R.2
Sasnauskas, G.3
Urbanke, C.4
Cherny, D.5
Grazulis, S.6
Huber, R.7
-
13
-
-
0033818703
-
Structure of the tetrameric restriction endonuclease NgoMIV in complex with cleaved DNA
-
M. Deibert, S. Grazulis, G. Sasnauskas, V. Siksnys, and R. Huber Structure of the tetrameric restriction endonuclease NgoMIV in complex with cleaved DNA Nat. Struct. Biol. 7 2000 792 799
-
(2000)
Nat. Struct. Biol.
, vol.7
, pp. 792-799
-
-
Deibert, M.1
Grazulis, S.2
Sasnauskas, G.3
Siksnys, V.4
Huber, R.5
-
14
-
-
0037082418
-
Crystal structure of the Bse634I restriction endonuclease: Comparison of two enzymes recognizing the same DNA sequence
-
S. Grazulis, M. Deibert, R. Rimseliene, R. Skirgaila, G. Sasnauskas, A. Lagunavicius, V. Repin, C. Urbanke, R. Huber, and V. Siksnys Crystal structure of the Bse634I restriction endonuclease: comparison of two enzymes recognizing the same DNA sequence Nucleic Acids Res. 30 2002 876 885
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 876-885
-
-
Grazulis, S.1
Deibert, M.2
Rimseliene, R.3
Skirgaila, R.4
Sasnauskas, G.5
Lagunavicius, A.6
Repin, V.7
Urbanke, C.8
Huber, R.9
Siksnys, V.10
-
15
-
-
16244422033
-
Conversion of the tetrameric restriction endonuclease Bse634I into a dimer: Oligomeric structure-stability-function correlations
-
M. Zaremba, G. Sasnauskas, C. Urbanke, and V. Siksnys Conversion of the tetrameric restriction endonuclease Bse634I into a dimer: oligomeric structure-stability-function correlations J. Mol. Biol. 348 2005 459 478
-
(2005)
J. Mol. Biol.
, vol.348
, pp. 459-478
-
-
Zaremba, M.1
Sasnauskas, G.2
Urbanke, C.3
Siksnys, V.4
-
16
-
-
14244262078
-
Structure and function of tetrameric restriction enzymes
-
A. Pingoud Springer Berlin, Heidelberg, New York
-
V. Siksnys, S. Grazulis, and R. Huber Structure and function of tetrameric restriction enzymes A. Pingoud Restriction Endonucleases 2004 Springer Berlin, Heidelberg, New York 237 259
-
(2004)
Restriction Endonucleases
, pp. 237-259
-
-
Siksnys, V.1
Grazulis, S.2
Huber, R.3
-
17
-
-
0345869711
-
Generation of the BfiI restriction endonuclease from the fusion of a DNA recognition domain to a non-specific nuclease from the phospholipase D superfamily
-
M. Zaremba, C. Urbanke, S.E. Halford, and V. Siksnys Generation of the BfiI restriction endonuclease from the fusion of a DNA recognition domain to a non-specific nuclease from the phospholipase D superfamily J. Mol. Biol. 336 2004 81 92
-
(2004)
J. Mol. Biol.
, vol.336
, pp. 81-92
-
-
Zaremba, M.1
Urbanke, C.2
Halford, S.E.3
Siksnys, V.4
-
18
-
-
0028934112
-
Specific DNA recognition by EcoRV restriction endonuclease induced by calcium ions
-
I.B. Vipond, and S.E. Halford Specific DNA recognition by EcoRV restriction endonuclease induced by calcium ions Biochemistry 34 1995 1113 1119
-
(1995)
Biochemistry
, vol.34
, pp. 1113-1119
-
-
Vipond, I.B.1
Halford, S.E.2
-
19
-
-
0030885532
-
DNA binding specificity of MunI restriction endonuclease is controlled by pH and calcium ions: Involvement of active site carboxylate residues
-
A. Lagunavicius, S. Grazulis, E. Balciunaite, D. Vainius, and V. Siksnys DNA binding specificity of MunI restriction endonuclease is controlled by pH and calcium ions: Involvement of active site carboxylate residues Biochemistry 36 1997 11093 11099
-
(1997)
Biochemistry
, vol.36
, pp. 11093-11099
-
-
Lagunavicius, A.1
Grazulis, S.2
Balciunaite, E.3
Vainius, D.4
Siksnys, V.5
-
20
-
-
0031596403
-
2+-ions stimulate DNA binding specificity of Cfr10I restriction enzyme
-
2+-ions stimulate DNA binding specificity of Cfr10I restriction enzyme Biol. Chem. 379 1998 595 598
-
(1998)
Biol. Chem.
, vol.379
, pp. 595-598
-
-
Skirgaila, R.1
Siksnys, V.2
-
21
-
-
0028932881
-
Structure and function of restriction endonucleases
-
A.K. Aggarwal Structure and function of restriction endonucleases Curr. Opin. Struct. Biol. 5 1995 11 19
-
(1995)
Curr. Opin. Struct. Biol.
, vol.5
, pp. 11-19
-
-
Aggarwal, A.K.1
-
22
-
-
0028172810
-
Five-stranded beta-sheet sandwiched with two α-helices: A structural link between restriction endonucleases EcoRI and EcoRV
-
C. Venclovas, A. Timinskas, and V. Siksnys Five-stranded beta-sheet sandwiched with two α-helices: a structural link between restriction endonucleases EcoRI and EcoRV Proteins 20 1994 279 282
-
(1994)
Proteins
, vol.20
, pp. 279-282
-
-
Venclovas, C.1
Timinskas, A.2
Siksnys, V.3
-
23
-
-
27644485012
-
Structure of the metal-independent restriction enzyme BfiI reveals fusion of a specific DNA-binding domain with a nonspecific nuclease
-
S. Grazulis, E. Manakova, M. Roessle, M. Bochtler, G. Tamulaitiene, R. Huber, and V. Siksnys Structure of the metal-independent restriction enzyme BfiI reveals fusion of a specific DNA-binding domain with a nonspecific nuclease Proc. Natl. Acad. Sci. USA 102 2005 15797 15802
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 15797-15802
-
-
Grazulis, S.1
Manakova, E.2
Roessle, M.3
Bochtler, M.4
Tamulaitiene, G.5
Huber, R.6
Siksnys, V.7
-
24
-
-
16244416723
-
Solution structure of the B3 DNA binding domain of the Arabidopsis cold-responsive transcription factor RAV1
-
K. Yamasaki, T. Kigawa, M. Inoue, M. Tateno, T. Yamasaki, T. Yabuki, M. Aoki, E. Seki, T. Matsuda, Y. Tomo, N. Hayami, T. Terada, M. Shirouzu, T. Osanai, A. Tanaka, M. Seki, K. Shinozaki, and S. Yokoyama Solution structure of the B3 DNA binding domain of the Arabidopsis cold-responsive transcription factor RAV1 Plant Cell 16 2004 3448 3459
-
(2004)
Plant Cell
, vol.16
, pp. 3448-3459
-
-
Yamasaki, K.1
Kigawa, T.2
Inoue, M.3
Tateno, M.4
Yamasaki, T.5
Yabuki, T.6
Aoki, M.7
Seki, E.8
Matsuda, T.9
Tomo, Y.10
Hayami, N.11
Terada, T.12
Shirouzu, M.13
Osanai, T.14
Tanaka, A.15
Seki, M.16
Shinozaki, K.17
Yokoyama, S.18
-
25
-
-
0032478624
-
Cooperative binding properties of restriction endonuclease EcoRII with DNA recognition sites
-
M. Reuter, D. Kupper, A. Meisel, C. Schroeder, and D.H. Krueger Cooperative binding properties of restriction endonuclease EcoRII with DNA recognition sites J. Biol. Chem. 273 1998 8294 8300
-
(1998)
J. Biol. Chem.
, vol.273
, pp. 8294-8300
-
-
Reuter, M.1
Kupper, D.2
Meisel, A.3
Schroeder, C.4
Krueger, D.H.5
-
27
-
-
0033582491
-
Regions of endonuclease EcoRII involved in DNA target recognition identified by membrane-bound peptide repertoires
-
M. Reuter, J. Schneider-Mergener, D. Kupper, A. Meisel, P. Mackeldanz, D.H. Krueger, and C. Schroeder Regions of endonuclease EcoRII involved in DNA target recognition identified by membrane-bound peptide repertoires J. Biol. Chem. 274 1999 5213 5221
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 5213-5221
-
-
Reuter, M.1
Schneider-Mergener, J.2
Kupper, D.3
Meisel, A.4
MacKeldanz, P.5
Krueger, D.H.6
Schroeder, C.7
-
29
-
-
0037470599
-
The metal-independent type IIs restriction enzyme BfiI is a dimer that binds two DNA sites but has only one catalytic centre
-
A. Lagunavicius, G. Sasnauskas, S.E. Halford, and V. Siksnys The metal-independent type IIs restriction enzyme BfiI is a dimer that binds two DNA sites but has only one catalytic centre J. Mol. Biol. 326 2003 1051 1064
-
(2003)
J. Mol. Biol.
, vol.326
, pp. 1051-1064
-
-
Lagunavicius, A.1
Sasnauskas, G.2
Halford, S.E.3
Siksnys, V.4
-
30
-
-
0036386075
-
KyPlot - A User-oriented Tool for Statistical Data Analysis and Visualization
-
K. Yoshioka KyPlot - A User-oriented Tool for Statistical Data Analysis and Visualization CompStat 17 2002 425 437
-
(2002)
CompStat
, vol.17
, pp. 425-437
-
-
Yoshioka, K.1
-
31
-
-
0034479757
-
TOP: A new method for protein structure comparisons and similarity searches
-
G. Lu TOP: A new method for protein structure comparisons and similarity searches J. Appl. Cryst. 33 2000 176 183
-
(2000)
J. Appl. Cryst.
, vol.33
, pp. 176-183
-
-
Lu, G.1
-
32
-
-
0026244229
-
MOLSCRIPT: A program to produce both detailed and schematic plots of protein structures
-
P.J. Kraulis MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures J. Appl. Crystallogr. 24 1991 946 950
-
(1991)
J. Appl. Crystallogr.
, vol.24
, pp. 946-950
-
-
Kraulis, P.J.1
-
33
-
-
0030815133
-
Raster3D: Photorealistic molecular graphics
-
E.A. Merritt, and D.J. Bacon Raster3D: photorealistic molecular graphics Methods Enzymol. 277 1997
-
(1997)
Methods Enzymol.
, vol.277
-
-
Merritt, E.A.1
Bacon, D.J.2
|