-
1
-
-
13444293333
-
REBASE - Restriction enzymes and DNA methyltransferases
-
Roberts,R.J., Vincze,T., Posfai,J. and Macelis,D. (2005) REBASE - restriction enzymes and DNA methyltransferases. Nucleic Acids Res., 33, D230-D232.
-
(2005)
Nucleic Acids Res.
, vol.33
-
-
Roberts, R.J.1
Vincze, T.2
Posfai, J.3
Macelis, D.4
-
2
-
-
17044403057
-
Type II restriction endonucleases: Structure and mechanism
-
Pingoud,A., Fuxreiter,M., Pingoud,V. and Wende,W. (2005) Type II restriction endonucleases: Structure and mechanism. Cell Mol. Life Sci., 62, 685-707.
-
(2005)
Cell Mol. Life Sci.
, vol.62
, pp. 685-707
-
-
Pingoud, A.1
Fuxreiter, M.2
Pingoud, V.3
Wende, W.4
-
3
-
-
4444373591
-
An asymmetric complex of restriction endonuclease MspI on its palindromic DNA recognition site
-
Xu,Q.S., Kucera,R.B., Roberts,R.J. and Guo,H.C. (2004) An asymmetric complex of restriction endonuclease MspI on its palindromic DNA recognition site. Structure, 12, 1741-1747.
-
(2004)
Structure
, vol.12
, pp. 1741-1747
-
-
Xu, Q.S.1
Kucera, R.B.2
Roberts, R.J.3
Guo, H.C.4
-
4
-
-
0019083002
-
Restriction endonucleases from three strains of Haemophilus influenzae
-
Shen,S., Li,Q., Yan,P., Zhou,B., Ye,S., Lu,Y. and Wang,D. (1980) Restriction endonucleases from three strains of Haemophilus influenzae. Scientia Sinica, 23, 1435-1442.
-
(1980)
Scientia Sinica
, vol.23
, pp. 1435-1442
-
-
Shen, S.1
Li, Q.2
Yan, P.3
Zhou, B.4
Ye, S.5
Lu, Y.6
Wang, D.7
-
5
-
-
17144381324
-
Structure of HinP1I endonuclease reveals a striking similarity to the monomeric restriction enzyme MspI
-
Yang,Z., Horton,J.R., Maunus,R., Wilson,G.G., Roberts,R.J. and Cheng,X. (2005) Structure of HinP1I endonuclease reveals a striking similarity to the monomeric restriction enzyme MspI. Nucleic Acids Res., 33, 1892-1901.
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 1892-1901
-
-
Yang, Z.1
Horton, J.R.2
Maunus, R.3
Wilson, G.G.4
Roberts, R.J.5
Cheng, X.6
-
6
-
-
0031058884
-
Rotation function calculations with GLRF program
-
Tong,L. and Rossmann,M.G. (1997) Rotation function calculations with GLRF program. Methods Enzymol., 276, 594-611.
-
(1997)
Methods Enzymol.
, vol.276
, pp. 594-611
-
-
Tong, L.1
Rossmann, M.G.2
-
7
-
-
84889120137
-
Improved methods for building protein models in electron density maps and the location of errors in these models
-
Jones,T.A., Zou,J.Y., Cowan,S.W. and Kjeldgaard (1991) Improved methods for building protein models in electron density maps and the location of errors in these models. Acta Crystallog. sect. A, 47, 110-119.
-
(1991)
Acta Crystallog. Sect. A
, vol.47
, pp. 110-119
-
-
Jones, T.A.1
Zou, J.Y.2
Cowan, S.W.3
Kjeldgaard4
-
8
-
-
3543012707
-
Crystallography & NMR system: A new software suite for macromolecular structure determination
-
Brunger,A.T., Adams,P.D., Clore,G.M., DeLano,W.L., Gros,P., Grosse-Kunstleve,R.W., Jiang,J.S., Kuszewski,J., Nilges,M. and Pannu,N.S. (1998) Crystallography & NMR system: A new software suite for macromolecular structure determination. Acta Crystallog. sect. D, 54, 905-921.
-
(1998)
Acta Crystallog. Sect. D
, vol.54
, pp. 905-921
-
-
Brunger, A.T.1
Adams, P.D.2
Clore, G.M.3
DeLano, W.L.4
Gros, P.5
Grosse-Kunstleve, R.W.6
Jiang, J.S.7
Kuszewski, J.8
Nilges, M.9
Pannu, N.S.10
-
9
-
-
25844494491
-
MutH complexed with hemi- and unmethylated DNAS: Coupling base recognition and DNA cleavage
-
Lee,J.Y., Chang,J., Joseph,N., Ghirlando,R., Rao,D.N. and Yang,W. (2005) MutH complexed with hemi- and unmethylated DNAS: Coupling base recognition and DNA cleavage. Mol. Cell, 20, 155-166.
-
(2005)
Mol. Cell
, vol.20
, pp. 155-166
-
-
Lee, J.Y.1
Chang, J.2
Joseph, N.3
Ghirlando, R.4
Rao, D.N.5
Yang, W.6
-
10
-
-
27144484996
-
Structural basis for DNA bridging by barrier-to-autointegration factor
-
Bradley,C.M., Ronning,D.R., Ghirlando,R., Craigie,R. and Dyda,F. (2005) Structural basis for DNA bridging by barrier-to-autointegration factor. Nature Struct. Mol. Biol., 12, 935-936.
-
(2005)
Nature Struct. Mol. Biol.
, vol.12
, pp. 935-936
-
-
Bradley, C.M.1
Ronning, D.R.2
Ghirlando, R.3
Craigie, R.4
Dyda, F.5
-
11
-
-
0035883723
-
Structure and function of type II restriction endonucleases
-
Pingoud,A. and Jeltsch,A. (2001) Structure and function of type II restriction endonucleases. Nucleic Acids Res., 29, 3705-3727.
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 3705-3727
-
-
Pingoud, A.1
Jeltsch, A.2
-
12
-
-
0034641947
-
The crystal structure of DNA mismatch repair protein MutS binding to a G x T mismatch
-
Lamers,M.H., Perrakis,A., Enzlin,J.H., Winterwerp,H.H., de Wind,N. and Sixma,T.K. (2000) The crystal structure of DNA mismatch repair protein MutS binding to a G x T mismatch. Nature, 407, 711-717.
-
(2000)
Nature
, vol.407
, pp. 711-717
-
-
Lamers, M.H.1
Perrakis, A.2
Enzlin, J.H.3
Winterwerp, H.H.4
de Wind, N.5
Sixma, T.K.6
-
13
-
-
0034641938
-
Crystal structures of mismatch repair protein MutS and its complex with a substrate DNA
-
Obmolova,G., Ban,C., Hsieh,P. and Yang,W. (2000) Crystal structures of mismatch repair protein MutS and its complex with a substrate DNA. Nature, 407, 703-710.
-
(2000)
Nature
, vol.407
, pp. 703-710
-
-
Obmolova, G.1
Ban, C.2
Hsieh, P.3
Yang, W.4
-
14
-
-
0033544707
-
Recognition of a TG mismatch: The crystal structure of very short patch repair endonuclease in complex with a DNA duplex
-
Tsutakawa,S.E., Jingami,H. and Morikawa,K. (1999) Recognition of a TG mismatch: The crystal structure of very short patch repair endonuclease in complex with a DNA duplex. Cell, 99, 615-623.
-
(1999)
Cell
, vol.99
, pp. 615-623
-
-
Tsutakawa, S.E.1
Jingami, H.2
Morikawa, K.3
-
15
-
-
0037444086
-
Crystal structure of the Escherichia coli dcm very-short-patch DNA repair endonuclease bound to its reaction product-site in a DNA superhelix
-
Bunting,K.A., Roe,S.M., Headley,A., Brown,T., Savva,R. and Pearl,L.H. (2003) Crystal structure of the Escherichia coli dcm very-short-patch DNA repair endonuclease bound to its reaction product-site in a DNA superhelix. Nucleic Acids Res., 31, 1633-1639.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 1633-1639
-
-
Bunting, K.A.1
Roe, S.M.2
Headley, A.3
Brown, T.4
Savva, R.5
Pearl, L.H.6
-
16
-
-
0036143789
-
Sequence selectivity and degeneracy of a restriction endonuclease mediated by DNA intercalation
-
Horton,N.C., Dorner,L.F. and Perona,J.J. (2002) Sequence selectivity and degeneracy of a restriction endonuclease mediated by DNA intercalation. Nature Struct. Biol., 9, 42-47.
-
(2002)
Nature Struct. Biol.
, vol.9
, pp. 42-47
-
-
Horton, N.C.1
Dorner, L.F.2
Perona, J.J.3
-
17
-
-
27144542066
-
Crystal structure of a junction between B-DNA and Z-DNA reveals two extruded bases
-
Ha,S.C., Lowenhaupt,K., Rich,A., Kim,Y.G. and Kim,K.K. (2005) Crystal structure of a junction between B-DNA and Z-DNA reveals two extruded bases. Nature, 437, 1183-1186.
-
(2005)
Nature
, vol.437
, pp. 1183-1186
-
-
Ha, S.C.1
Lowenhaupt, K.2
Rich, A.3
Kim, Y.G.4
Kim, K.K.5
-
18
-
-
0028010888
-
HhaI methyltransferase flips its target base out of the DNA helix
-
Klimasauskas,S., Kumar,S., Roberts,R.J. and Cheng,X. (1994) HhaI methyltransferase flips its target base out of the DNA helix. Cell, 76, 357-369.
-
(1994)
Cell
, vol.76
, pp. 357-369
-
-
Klimasauskas, S.1
Kumar, S.2
Roberts, R.J.3
Cheng, X.4
-
20
-
-
0035883736
-
AdoMet-dependent methylation, DNA methyltransferases and base flipping
-
Cheng,X. and Roberts,R.J. (2001) AdoMet-dependent methylation, DNA methyltransferases and base flipping. Nucleic Acids Res., 29, 3784-3795.
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 3784-3795
-
-
Cheng, X.1
Roberts, R.J.2
-
21
-
-
25844440534
-
Rev1 employs a novel mechanism of DNA synthesis using a protein template
-
Nair,D.T., Johnson,R.E., Prakash,L., Prakash,S. and Aggarwal,A.K. (2005) Rev1 employs a novel mechanism of DNA synthesis using a protein template. Science, 309, 2219-2222.
-
(2005)
Science
, vol.309
, pp. 2219-2222
-
-
Nair, D.T.1
Johnson, R.E.2
Prakash, L.3
Prakash, S.4
Aggarwal, A.K.5
-
22
-
-
0030448581
-
Targeted base stacking disruption by the EcoRI DNA methyltransferase
-
Allan,B.W. and Reich,N.O. (1996) Targeted base stacking disruption by the EcoRI DNA methyltransferase. Biochemistry, 35, 14757-14762.
-
(1996)
Biochemistry
, vol.35
, pp. 14757-14762
-
-
Allan, B.W.1
Reich, N.O.2
-
23
-
-
0031941434
-
Direct real time observation of base flipping by the EcoRI DNA methyltransferase
-
Allan,B.W., Beechem,J.M., Lindstrom,W.M. and Reich,N.O. (1998) Direct real time observation of base flipping by the EcoRI DNA methyltransferase. J. Biol. Chem., 273, 2368-2373.
-
(1998)
J. Biol. Chem.
, vol.273
, pp. 2368-2373
-
-
Allan, B.W.1
Beechem, J.M.2
Lindstrom, W.M.3
Reich, N.O.4
-
24
-
-
0032519379
-
2-Aminopurine as a fluorescent probe for DNA base flipping by methyltransferases
-
Holz,B., Klimasauskas,S., Serva,S. and Weinhold,E. (1998) 2-Aminopurine as a fluorescent probe for DNA base flipping by methyltransferases. Nucleic Acids Res., 26, 1076-1083.
-
(1998)
Nucleic Acids Res.
, vol.26
, pp. 1076-1083
-
-
Holz, B.1
Klimasauskas, S.2
Serva, S.3
Weinhold, E.4
-
25
-
-
0032529485
-
2-Aminopurine fluorescence studies of base stacking interactions at abasic sites in DNA: Metal-ion and base sequence effects
-
Stivers,J.T. (1998) 2-Aminopurine fluorescence studies of base stacking interactions at abasic sites in DNA: Metal-ion and base sequence effects. Nucleic Acids Res., 26, 3837-3844.
-
(1998)
Nucleic Acids Res.
, vol.26
, pp. 3837-3844
-
-
Stivers, J.T.1
-
26
-
-
3343009003
-
Stopped-flow and mutational analysis of base flipping by the Escherichia coli Dam DNA-(adenine-N6)-methyltransferase
-
Liebert,K., Hermann,A., Schlickenrieder,M. and Jeltsch,A. (2004) Stopped-flow and mutational analysis of base flipping by the Escherichia coli Dam DNA-(adenine-N6)-methyltransferase. J. Mol. Biol., 341, 443-454.
-
(2004)
J. Mol. Biol.
, vol.341
, pp. 443-454
-
-
Liebert, K.1
Hermann, A.2
Schlickenrieder, M.3
Jeltsch, A.4
-
27
-
-
0014669561
-
Fluorescence studies of nucleotides and polynucleotides. I. Formycin, 2-aminopurine riboside, 2,6-diaminopurine riboside, and their derivatives
-
Ward,D.C., Reich,E. and Stryer,L. (1969) Fluorescence studies of nucleotides and polynucleotides. I. Formycin, 2-aminopurine riboside, 2,6-diaminopurine riboside, and their derivatives. J. Biol. Chem., 244, 1228-1237.
-
(1969)
J. Biol. Chem.
, vol.244
, pp. 1228-1237
-
-
Ward, D.C.1
Reich, E.2
Stryer, L.3
-
28
-
-
0034640127
-
Binding of EcoP15I DNA methyltransferase to DNA reveals a large structural distortion within the recognition sequence
-
Reddy,Y.V. and Rao,D.N. (2000) Binding of EcoP15I DNA methyltransferase to DNA reveals a large structural distortion within the recognition sequence. J. Mol. Biol., 298, 597-610.
-
(2000)
J. Mol. Biol.
, vol.298
, pp. 597-610
-
-
Reddy, Y.V.1
Rao, D.N.2
-
29
-
-
0034644729
-
Molecular enzymology of the EcoRV DNA-(Adenine-N (6))-methyltransferase: Kinetics of DNA binding and bending, kinetic mechanism and linear diffusion of the enzyme on DNA
-
Gowher,H. and Jeltsch,A. (2000) Molecular enzymology of the EcoRV DNA-(Adenine-N (6))-methyltransferase: Kinetics of DNA binding and bending, kinetic mechanism and linear diffusion of the enzyme on DNA. J. Mol. Biol., 303, 93-110.
-
(2000)
J. Mol. Biol.
, vol.303
, pp. 93-110
-
-
Gowher, H.1
Jeltsch, A.2
-
30
-
-
0037036363
-
Flipping duplex DNA inside out: A double base-flipping reaction mechanism by Escherichia coli MutY adenine glycosylase
-
Bernards,A.S., Miller,J.K., Bao,K.K. and Wong,I. (2002) Flipping duplex DNA inside out: A double base-flipping reaction mechanism by Escherichia coli MutY adenine glycosylase. J. Biol. Chem., 277, 20960-20964.
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 20960-20964
-
-
Bernards, A.S.1
Miller, J.K.2
Bao, K.K.3
Wong, I.4
-
31
-
-
0037416184
-
Dynamic evidence for metal ion catalysis in the reaction mediated by a flap endonuclease
-
Tock,M.R., Frary,E., Sayers,J.R. and Grasby,J.A. (2003) Dynamic evidence for metal ion catalysis in the reaction mediated by a flap endonuclease. EMBO J., 22, 995-1004.
-
(2003)
EMBO J.
, vol.22
, pp. 995-1004
-
-
Tock, M.R.1
Frary, E.2
Sayers, J.R.3
Grasby, J.A.4
-
32
-
-
0027218657
-
Substrate-assisted catalysis in the cleavage of DNA by the EcoRI and EcoRV restriction enzymes
-
Jeltsch,A., Alves,J., Wolfes,H., Maass,G. and Pingoud,A. (1993) Substrate-assisted catalysis in the cleavage of DNA by the EcoRI and EcoRV restriction enzymes. Proc. Natl Acad. Sci. USA, 90, 8499-8503.
-
(1993)
Proc. Natl Acad. Sci. USA
, vol.90
, pp. 8499-8503
-
-
Jeltsch, A.1
Alves, J.2
Wolfes, H.3
Maass, G.4
Pingoud, A.5
-
33
-
-
21244451435
-
Crystal structures of RNase H bound to an RNA/DNA hybrid: Substrate specificity and metal-dependent catalysis
-
Nowotny,M., Gaidamakov,S.A., Crouch,R.J. and Yang,W. (2005) Crystal structures of RNase H bound to an RNA/DNA hybrid: Substrate specificity and metal-dependent catalysis. Cell, 121, 1005-1016.
-
(2005)
Cell
, vol.121
, pp. 1005-1016
-
-
Nowotny, M.1
Gaidamakov, S.A.2
Crouch, R.J.3
Yang, W.4
-
34
-
-
14244252109
-
Restriction endonucleases: Structure of the conserved catalytic core and the role of metal ions in DNA cleavage
-
Horton,J.R., Blumenthal,R.M. and Cheng,X. (2004) Restriction endonucleases: Structure of the conserved catalytic core and the role of metal ions in DNA cleavage. Nucleic Acids and Mol. Biol., 14, 361-392.
-
(2004)
Nucleic Acids and Mol. Biol.
, vol.14
, pp. 361-392
-
-
Horton, J.R.1
Blumenthal, R.M.2
Cheng, X.3
-
35
-
-
18944390568
-
Two of a kind: BamHI and Bg1II
-
Vanamee,E.S., Viadiu,H., Likacs,C.M. and Aggarwal,A.K. (2004) Two of a kind: BamHI and Bg1II. Nucleic Acids and Mol. Biol., 14, 215-236.
-
(2004)
Nucleic Acids and Mol. Biol.
, vol.14
, pp. 215-236
-
-
Vanamee, E.S.1
Viadiu, H.2
Likacs, C.M.3
Aggarwal, A.K.4
|