-
1
-
-
17844400537
-
How restriction enzymes became the workhorses of molecular biology
-
PubMed: 15840723
-
Roberts RJ (2005) How restriction enzymes became the workhorses of molecular biology. Proc Natl Acad Sci U S A 102: 17: 5905-8. PubMed: 15840723.
-
(2005)
Proc Natl Acad Sci U S A
, vol.102
, Issue.17
, pp. 5905-5908
-
-
Roberts, R.J.1
-
2
-
-
0035883723
-
Structure and function of type II restriction endonucleases
-
doi:10.1093/nar/29.18.3705. PubMed: 11557805
-
Pingoud A, Jeltsch A (2001) Structure and function of type II restriction endonucleases. Nucleic Acids Res 29: 3705-3727. doi:10.1093/nar/29.18.3705. PubMed: 11557805.
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 3705-3727
-
-
Pingoud, A.1
Jeltsch, A.2
-
3
-
-
2442549510
-
S-Adenosyl-L-methionine-Dependent Restriction Enzymes
-
doi:10.1080/10409230490440532. PubMed: 15121719
-
Sistla S, Rao DN (2004) S-Adenosyl-L-methionine-Dependent Restriction Enzymes. Crit Rev Biochem Mol Biol 39: 1-19. doi:10.1080/10409230490440532. PubMed: 15121719.
-
(2004)
Crit Rev Biochem Mol Biol
, vol.39
, pp. 1-19
-
-
Sistla, S.1
Rao, D.N.2
-
4
-
-
0036880785
-
Complex restriction enzymes: NTPdriven molecular motors
-
doi:10.1016/S0300-9084(02)00020-2. PubMed: 12595133
-
Bourniquel AA, Bickle TA (2002) Complex restriction enzymes: NTPdriven molecular motors. Biochimie 84: 1047-1059. doi:10.1016/S0300-9084(02)00020-2. PubMed: 12595133.
-
(2002)
Biochimie
, vol.84
, pp. 1047-1059
-
-
Bourniquel, A.A.1
Bickle, T.A.2
-
5
-
-
0035967885
-
S-adenosyl-l-methionine is required for DNA cleavage by type III restriction enzymes
-
doi:10.1006/jmbi.2001.4744. PubMed: 11419939
-
Bist P, Sistla S, Krishnamurthy V, Acharya A, Chandrakala B et al. (2001) S-adenosyl-l-methionine is required for DNA cleavage by type III restriction enzymes. J Mol Biol 310: 93-109. doi:10.1006/jmbi.2001.4744. PubMed: 11419939.
-
(2001)
J Mol Biol
, vol.310
, pp. 93-109
-
-
Bist, P.1
Sistla, S.2
Krishnamurthy, V.3
Acharya, A.4
Chandrakala, B.5
-
6
-
-
79956114022
-
A type IV modification-dependent restriction enzyme SauUSI from Staphylococcus aureus subsp. Aureus USA300
-
doi:10.1093/nar/gkr098. PubMed: 21421560
-
Xu SY, Corvaglia AR, Chan SH, Zheng Y, Linder P (2011) A type IV modification-dependent restriction enzyme SauUSI from Staphylococcus aureus subsp. aureus USA300. Nucleic Acids Res 39: 5597-5610. doi:10.1093/nar/gkr098. PubMed: 21421560.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. 5597-5610
-
-
Xu, S.Y.1
Corvaglia, A.R.2
Chan, S.H.3
Zheng, Y.4
Linder, P.5
-
7
-
-
0037161262
-
The GTP-dependent restriction enzyme McrBC from Escherichia coli forms high-molecular mass complexes with DNA and produces a cleavage pattern with a characteristic 10-base pair repeat
-
doi:10.1021/bi015687u. PubMed: 11955074
-
Pieper U, Groll DH, Wünsch S, Gast FU, Speck C et al. (2002) The GTP-dependent restriction enzyme McrBC from Escherichia coli forms high-molecular mass complexes with DNA and produces a cleavage pattern with a characteristic 10-base pair repeat. Biochemistry 41: 5245-5254. doi:10.1021/bi015687u. PubMed: 11955074.
-
(2002)
Biochemistry
, vol.41
, pp. 5245-5254
-
-
Pieper, U.1
Groll, D.H.2
Wünsch, S.3
Gast, F.U.4
Speck, C.5
-
8
-
-
82255183196
-
Comparative characterization of the PvuRts1I family of restriction enzymes and their application in mapping genomic 5-hydroxymethylcytosine
-
doi: 10.1093/nar/gkr607. PubMed: 21813453
-
Wang H, Guan S, Quimby A, Cohen-Karni D, Pradhan S et al. (2011) Comparative characterization of the PvuRts1I family of restriction enzymes and their application in mapping genomic 5-hydroxymethylcytosine. Nucleic Acids Res 39: 9294-9305. doi: 10.1093/nar/gkr607. PubMed: 21813453.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. 9294-9305
-
-
Wang, H.1
Guan, S.2
Quimby, A.3
Cohen-Karni, D.4
Pradhan, S.5
-
9
-
-
77956500617
-
A unique family of Mrr-like modification-dependent restriction endonucleases
-
doi:10.1093/nar/gkq327. PubMed: 20444879
-
Zheng Y, Cohen-Karni D, Xu D, Chin HG, Wilson G et al. (2010) A unique family of Mrr-like modification-dependent restriction endonucleases. Nucleic Acids Res 38: 5527-5534. doi:10.1093/nar/gkq327. PubMed: 20444879.
-
(2010)
Nucleic Acids Res
, vol.38
, pp. 5527-5534
-
-
Zheng, Y.1
Cohen-Karni, D.2
Xu, D.3
Chin, H.G.4
Wilson, G.5
-
10
-
-
84876532947
-
Characterization of the 5- hydroxymethylcytosine-specific DNA restriction endonucleases
-
doi:10.1093/nar/gkt102. PubMed: 23482393
-
Borgaro JG, Zhu Z (2013) Characterization of the 5- hydroxymethylcytosine-specific DNA restriction endonucleases. Nucleic Acids Res 41: 4198-4206. doi:10.1093/nar/gkt102. PubMed: 23482393.
-
(2013)
Nucleic Acids Res
, vol.41
, pp. 4198-4206
-
-
Borgaro, J.G.1
Zhu, Z.2
-
11
-
-
56649114274
-
A One Pot, One Step, Precision Cloning Method with High Throughput Capability
-
doi:10.1371/journal.pone.0003647. PubMed: 18985154
-
Engler C, Kandzia R, Marillonnet S (2008) A One Pot, One Step, Precision Cloning Method with High Throughput Capability. PLOS ONE 3: e3647. doi:10.1371/journal.pone.0003647. PubMed: 18985154.
-
(2008)
PLOS ONE
, vol.3
-
-
Engler, C.1
Kandzia, R.2
Marillonnet, S.3
-
12
-
-
0020569794
-
A new sequence-specific endonuclease from Gluconobacter suboxydans
-
doi:10.1016/0014-5793(83)80078-7. PubMed: 6299786
-
Janulaitis A, bitinaite J, Jaskeleviciene B (1983) A new sequence-specific endonuclease from Gluconobacter suboxydans. FEBS Lett 151: 243-247. doi:10.1016/0014-5793(83)80078-7. PubMed: 6299786.
-
(1983)
FEBS Lett
, vol.151
, pp. 243-247
-
-
Janulaitis, A.1
Bitinaite, J.2
Jaskeleviciene, B.3
-
13
-
-
0024236289
-
Restriction endonucleases of a new type
-
doi:10.1016/0378-1119(88)90259-4. PubMed: 2854813
-
Petrusyte M, bitinaite J, Menkevicius S, Klimasauskas S, Butkus V, et al (1988) Restriction endonucleases of a new type. Gene 74: 89-91. doi:10.1016/0378-1119(88)90259-4. PubMed: 2854813.
-
(1988)
Gene
, vol.74
, pp. 89-91
-
-
Petrusyte, M.1
Bitinaite, J.2
Menkevicius, S.3
Klimasauskas, S.4
Butkus, V.5
-
14
-
-
0035865840
-
Characterization of BseMII, a new type IV restriction-modification system, which recognizes the pentanucleotide sequence 5′-CTCAG(N)(10/8)
-
Jurenaite-Urbanaviciene S, Kazlauskiene R, Urbelyte V, Maneliene Z, Petrusyte M et al. (2001) Characterization of BseMII, a new type IV restriction-modification system, which recognizes the pentanucleotide sequence 5′-CTCAG(N)(10/8)/. Nucleic acids research 29: 895-903.
-
(2001)
Nucleic Acids Research
, vol.29
, pp. 895-903
-
-
Jurenaite-Urbanaviciene, S.1
Kazlauskiene, R.2
Urbelyte, V.3
Maneliene, Z.4
Petrusyte, M.5
-
15
-
-
84859495389
-
Related bifunctional restriction endonuclease-methyltransferase triplets: TspDTI, Tth111II/TthHB27I and TsoI with distinct specificities
-
doi:10.1186/1471-2199-13-13. PubMed: 22489904
-
Zylicz-Stachula A, Zolnierkiewicz O, Lubys A, Ramanauskaite D, Mitkaite G et al. (2012) Related bifunctional restriction endonuclease-methyltransferase triplets: TspDTI, Tth111II/TthHB27I and TsoI with distinct specificities. BMC Mol Biol 13: 13. doi:10.1186/1471-2199-13-13. PubMed: 22489904.
-
(2012)
BMC Mol Biol
, vol.13
, pp. 13
-
-
Zylicz-Stachula, A.1
Zolnierkiewicz, O.2
Lubys, A.3
Ramanauskaite, D.4
Mitkaite, G.5
-
16
-
-
56649117672
-
MmeI: A minimal Type II restriction-modification system that only modifies one DNA strand for host protection
-
doi:10.1093/nar/gkn711. PubMed: 18931376
-
Morgan RD, Bhatia TK, Lovasco L, Davis TB (2008) MmeI: a minimal Type II restriction-modification system that only modifies one DNA strand for host protection. Nucleic Acids Res 36: 6558-6570. doi:10.1093/nar/gkn711. PubMed: 18931376.
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 6558-6570
-
-
Morgan, R.D.1
Bhatia, T.K.2
Lovasco, L.3
Davis, T.B.4
-
17
-
-
69849115232
-
The MmeI family: Type II restriction-modification enzymes that employ single-strand modification for host protection
-
doi:10.1093/nar/gkp534. PubMed: 19578066
-
Morgan RD, Dwinell EA, Bhatia TK, Lang EM, Luyten YA (2009) The MmeI family: type II restriction-modification enzymes that employ single-strand modification for host protection. Nucleic Acids Res 37: 5208-5221. doi:10.1093/nar/gkp534. PubMed: 19578066.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 5208-5221
-
-
Morgan, R.D.1
Dwinell, E.A.2
Bhatia, T.K.3
Lang, E.M.4
Luyten, Y.A.5
-
18
-
-
82655189441
-
Bifunctional TaqII restriction endonuclease: Redefining the prototype DNA recognition site and establishing the Fidelity Index for partial cleaving
-
doi:10.1186/1471-2091-12-62. PubMed: 22141927
-
Zylicz-Stachula A, Zołnierkiewicz O, Sliwińska K, Jeżewska-Fra̧ckowiak J, Skowron PM (2011) Bifunctional TaqII restriction endonuclease: redefining the prototype DNA recognition site and establishing the Fidelity Index for partial cleaving. BMC Biochem 12: 62. doi:10.1186/1471-2091-12-62. PubMed: 22141927.
-
(2011)
BMC Biochem
, vol.12
, pp. 62
-
-
Zylicz-Stachula, A.1
Zołnierkiewicz, O.2
Sliwińska, K.3
Jezewska-Fra̧ckowiak, J.4
Skowron, P.M.5
-
19
-
-
80054053723
-
Characterization and crystal structure of the type IIG restriction endonuclease RM.BpuSI
-
doi:10.1093/nar/gkr543. PubMed: 21724614
-
Shen BW, Xu D, Chan SH, Zheng Y, Zhu Z et al. (2011) Characterization and crystal structure of the type IIG restriction endonuclease RM.BpuSI. Nucleic Acids Res 39: 8223-8236. doi:10.1093/nar/gkr543. PubMed: 21724614.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. 8223-8236
-
-
Shen, B.W.1
Xu, D.2
Chan, S.H.3
Zheng, Y.4
Zhu, Z.5
-
20
-
-
0034746572
-
Structure of the N6-adenine DNA methyltransferase M.TaqI in complex with DNA and a cofactor analog
-
doi:10.1038/84104. PubMed: 11175899
-
Goedecke K, Pignot M, Goody RS, Scheidig AJ, Weinhold E (2001) Structure of the N6-adenine DNA methyltransferase M.TaqI in complex with DNA and a cofactor analog. Nat Struct Biol 8: 121-125. doi:10.1038/84104. PubMed: 11175899.
-
(2001)
Nat Struct Biol
, vol.8
, pp. 121-125
-
-
Goedecke, K.1
Pignot, M.2
Goody, R.S.3
Scheidig, A.J.4
Weinhold, E.5
-
21
-
-
0035226951
-
Methods for determining activity and specificity of DNA binding and DNA cleavage by class II restriction endonucleases
-
PubMed: 11265290
-
Jeltsch A, Pingoud AM (2001) Methods for determining activity and specificity of DNA binding and DNA cleavage by class II restriction endonucleases. Methods Mol Biol 160: 287-308. PubMed: 11265290.
-
(2001)
Methods Mol Biol
, vol.160
, pp. 287-308
-
-
Jeltsch, A.1
Pingoud, A.M.2
-
22
-
-
0031972919
-
1-Anilino-8-naphthalene sulfonate anionprotein binding depends primarily on ion pair formation
-
doi:10.1016/S0006-3495(98)77799-9. PubMed: 9449342
-
Matulis D, Lovrien R (1998) 1-Anilino-8-naphthalene sulfonate anionprotein binding depends primarily on ion pair formation. Biophys J 74: 422-429. doi:10.1016/S0006-3495(98)77799-9. PubMed: 9449342.
-
(1998)
Biophys J
, vol.74
, pp. 422-429
-
-
Matulis, D.1
Lovrien, R.2
-
23
-
-
36249010393
-
Binding of MmeI restriction-modification enzyme to its specific recognition sequence is stimulated by S-adenosyl-L-methionine
-
doi:10.1007/s12033-007-0034-0. PubMed: 17914173
-
Nakonieczna J, Zmijewski JW, Banecki B, Podhajska AJ (2007) Binding of MmeI restriction-modification enzyme to its specific recognition sequence is stimulated by S-adenosyl-L-methionine. Mol Biotechnol 37: 127-135. doi:10.1007/s12033-007-0034-0. PubMed: 17914173.
-
(2007)
Mol Biotechnol
, vol.37
, pp. 127-135
-
-
Nakonieczna, J.1
Zmijewski, J.W.2
Banecki, B.3
Podhajska, A.J.4
-
24
-
-
0028903563
-
BspLUII III, a bifunctional restriction and modification enzyme from a thermophilic strain Bacillus species LUII
-
doi:10.1093/nar/23.7.1213. PubMed: 7739899
-
Chernov AV, Matvienko NN, Zheleznaya LA, Matvienko NI (1995) BspLUII III, a bifunctional restriction and modification enzyme from a thermophilic strain Bacillus species LUII. Nucleic Acids Res 23: 1213-1214. doi:10.1093/nar/23.7. 1213. PubMed: 7739899.
-
(1995)
Nucleic Acids Res
, vol.23
, pp. 1213-1214
-
-
Chernov, A.V.1
Matvienko, N.N.2
Zheleznaya, L.A.3
Matvienko, N.I.4
-
25
-
-
0035890647
-
Characterization of the type IV restriction modification system BspLU11III from Bacillus sp. LU11
-
doi:10.1093/nar/29.22.4691. PubMed: 11713319
-
Lepikhov K, Tchernov A, Zheleznaja L, Matvienko N, Walter J et al. (2001) Characterization of the type IV restriction modification system BspLU11III from Bacillus sp. LU11. Nucleic Acids Res 29: 4691-4698. doi:10.1093/nar/29.22.4691. PubMed: 11713319.
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 4691-4698
-
-
Lepikhov, K.1
Tchernov, A.2
Zheleznaja, L.3
Matvienko, N.4
Walter, J.5
-
26
-
-
0037389511
-
A nomenclature for restriction enzymes, DNA methyltransferases, homing endonucleases and their genes
-
doi:10.1093/nar/gkg274. PubMed: 12654995
-
Roberts RJ (2003) A nomenclature for restriction enzymes, DNA methyltransferases, homing endonucleases and their genes. Nucleic Acids Res 31: 1805-1812. doi:10.1093/nar/gkg274. PubMed: 12654995.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 1805-1812
-
-
Roberts, R.J.1
-
27
-
-
0017889628
-
ATP-induced conformational changes in the restriction endonuclease from Escherichia coli K-12
-
doi:10.1073/pnas.75.7.3099. PubMed: 356045
-
Bickle TA, Brack C, Yuan R (1978) ATP-induced conformational changes in the restriction endonuclease from Escherichia coli K-12. Proc Natl Acad Sci U S A 75: 3099-3103. doi:10.1073/pnas.75.7.3099. PubMed: 356045.
-
(1978)
Proc Natl Acad Sci U S A
, vol.75
, pp. 3099-3103
-
-
Bickle, T.A.1
Brack, C.2
Yuan, R.3
-
28
-
-
0029045067
-
Type III restriction endonucleases translocate DNA in a reaction driven by recognition site-specific ATP hydrolysis
-
PubMed: 7796821
-
Meisel A, Mackeldanz P, Bickle TA, Krüger DH, Schroeder C (1995) Type III restriction endonucleases translocate DNA in a reaction driven by recognition site-specific ATP hydrolysis. EMBO J 14: 2958-2966. PubMed: 7796821.
-
(1995)
EMBO J
, vol.14
, pp. 2958-2966
-
-
Meisel, A.1
Mackeldanz, P.2
Bickle, T.A.3
Krüger, D.H.4
Schroeder, C.5
-
29
-
-
0141645630
-
S-adenosyl methionine prevents promiscuous DNA cleavage by the EcoP1I type III restriction enzyme
-
doi:10.1016/j.jmb.2003.08.042. PubMed: 14529619
-
Peakman LJ, Antognozzi M, Bickle TA, Janscak P, Szczelkun MD (2003) S-adenosyl methionine prevents promiscuous DNA cleavage by the EcoP1I type III restriction enzyme. J Mol Biol 333: 321-335. doi:10.1016/j.jmb.2003.08.042. PubMed: 14529619.
-
(2003)
J Mol Biol
, vol.333
, pp. 321-335
-
-
Peakman, L.J.1
Antognozzi, M.2
Bickle, T.A.3
Janscak, P.4
Szczelkun, M.D.5
|