-
2
-
-
0027184481
-
A general two-metal ion mechanism for catalytic RNA
-
T. A. Steitz J. A. Steitz A general two-metal ion mechanism for catalytic RNA Proc. Natl. Acad. Sci. U. S. A. 1993 90 6498 6502
-
(1993)
Proc. Natl. Acad. Sci. U. S. A
, vol.90
, pp. 6498-6502
-
-
Steitz, T.A.1
Steitz, J.A.2
-
3
-
-
0032839614
-
Structure and Nuclease Activity of Simple Dinuclear Metal Complexes: Quantitative Dissection of the Role of Metal Ions
-
N. Williams B. Takasaki M. Wall J. Chin Structure and Nuclease Activity of Simple Dinuclear Metal Complexes: Quantitative Dissection of the Role of Metal Ions Acc. Chem. Res. 1999 32 485 493
-
(1999)
Acc. Chem. Res
, vol.32
, pp. 485-493
-
-
Williams, N.1
Takasaki, B.2
Wall, M.3
Chin, J.4
-
4
-
-
48249130503
-
An integrated look at metallonuclease mechanism
-
C. M. Dupureur An integrated look at metallonuclease mechanism Curr. Chem. Biol. 2008 2 159 173
-
(2008)
Curr. Chem. Biol
, vol.2
, pp. 159-173
-
-
Dupureur, C.M.1
-
6
-
-
43049110531
-
Roles of Metal Ions in Nucleases
-
C. M. Dupureur Roles of Metal Ions in Nucleases Curr. Opin. Chem. Biol. 2008 12 2 250
-
(2008)
Curr. Opin. Chem. Biol
, vol.12
, Issue.2
, pp. 250
-
-
Dupureur, C.M.1
-
7
-
-
0028932881
-
Structure and function of restriction endonucleases
-
A. K. Aggarwal Structure and function of restriction endonucleases Curr. Opin. Struct. Biol. 1995 5 11 19
-
(1995)
Curr. Opin. Struct. Biol
, vol.5
, pp. 11-19
-
-
Aggarwal, A.K.1
-
8
-
-
0037180394
-
Catalytic mechanisms of restriction and homing endonucleases
-
E. A. Galburt B. L. Stoddard Catalytic mechanisms of restriction and homing endonucleases Biochemistry 2002 41 13851 13860
-
(2002)
Biochemistry
, vol.41
, pp. 13851-13860
-
-
Galburt, E.A.1
Stoddard, B.L.2
-
9
-
-
2642527026
-
DNA Cleavage by EcoRV endonuclease: Two metal ions in three metal ion binding sites
-
N. C. Horton J. J. Perona DNA Cleavage by EcoRV endonuclease: Two metal ions in three metal ion binding sites Biochemistry 2004 43 6841 6857
-
(2004)
Biochemistry
, vol.43
, pp. 6841-6857
-
-
Horton, N.C.1
Perona, J.J.2
-
10
-
-
55549123481
-
An equivalent metal ion in one- and two-metal-ion catalysis
-
W. Yang An equivalent metal ion in one- and two-metal-ion catalysis Nat. Struct. Mol. Biol. 2008 15 1228 1231
-
(2008)
Nat. Struct. Mol. Biol
, vol.15
, pp. 1228-1231
-
-
Yang, W.1
-
12
-
-
8344256614
-
Metal-dependent DNA cleavage mechanism of the I-CreI LAGLIDADG homing endonuclease
-
B. Chevalier D. Sussman C. Otis A. J. Noel M. Turmel C. Lemieux K. Stephens R. J. Monnat, Jr. B. L. Stoddard Metal-dependent DNA cleavage mechanism of the I-CreI LAGLIDADG homing endonuclease Biochemistry 2004 43 14015 14026
-
(2004)
Biochemistry
, vol.43
, pp. 14015-14026
-
-
Chevalier, B.1
Sussman, D.2
Otis, C.3
Noel, A.J.4
Turmel, M.5
Lemieux, C.6
Stephens, K.7
Monnat, Jr.R.J.8
Stoddard, B.L.9
-
13
-
-
70349229163
-
On the divalent metal ion dependence of DNA cleavage by restriction endonucleases of the EcoRI family
-
V. Pingoud W. Wende P. Friedhoff M. Reuter J. Alves A. Jeltsch L. Mones M. Fuxreiter A. Pingoud On the divalent metal ion dependence of DNA cleavage by restriction endonucleases of the EcoRI family J. Mol. Biol. 2009 393 140 160
-
(2009)
J. Mol. Biol
, vol.393
, pp. 140-160
-
-
Pingoud, V.1
Wende, W.2
Friedhoff, P.3
Reuter, M.4
Alves, J.5
Jeltsch, A.6
Mones, L.7
Fuxreiter, M.8
Pingoud, A.9
-
14
-
-
77956330426
-
-
A. Pingoud, Springer Verlag, pp. 179-214
-
F. Winkler and A. Prota, in Nucleic Acids and Molecular Biology, ed., A. Pingoud,, Springer Verlag, 2004, vol. 14, pp. 179-214
-
(2004)
Nucleic Acids and Molecular Biology, Ed
-
-
Winkler, F.1
Prota, A.2
-
15
-
-
77956300188
-
-
A. Pingoud, Springer Verlag, pp. 361-392
-
J. R. Horton, R. Blumenthal and X. Cheng, in Nucleic Acids and Molecular Biology, ed., A. Pingoud,, Springer Verlag, 2004, vol. 14, pp. 361-392
-
(2004)
Nucleic Acids and Molecular Biology, Ed
-
-
Horton, J.R.1
Blumenthal, R.2
Cheng, X.3
-
16
-
-
0035815108
-
Two divalent metal ions in the active site of a new crystal form of human apurinic/apyrimidinic endonuclease, Ape1: Implications for the catalytic mechanism
-
P. T. Beernink B. W. Segelke M. Z. Hadi J. P. Erzberger D. M. Wilson, 3rd B. Rupp Two divalent metal ions in the active site of a new crystal form of human apurinic/apyrimidinic endonuclease, Ape1: implications for the catalytic mechanism J. Mol. Biol. 2001 307 1023 1034
-
(2001)
J. Mol. Biol
, vol.307
, pp. 1023-1034
-
-
Beernink, P.T.1
Segelke, B.W.2
Hadi, M.Z.3
Erzberger, J.P.4
Wilson III, D.M.5
Rupp, B.6
-
17
-
-
34249905486
-
A "moving metal mechanism" for substrate cleavage by the DNA repair endonuclease APE-1
-
N. Oezguen C. H. Schein S. R. Peddi T. D. Power T. Izumi W. Braun A "moving metal mechanism" for substrate cleavage by the DNA repair endonuclease APE-1 Proteins: Struct., Funct., Bioinf. 2007 68 313 323
-
(2007)
Proteins: Struct., Funct., Bioinf
, vol.68
, pp. 313-323
-
-
Oezguen, N.1
Schein, C.H.2
Peddi, S.R.3
Power, T.D.4
Izumi, T.5
Braun, W.6
-
19
-
-
0033600571
-
Probing the role of metal ions in RNA catalysis: Kinetic and thermodynamic characterization of a metal ion interaction with the 2′-moiety of the guanosine nucleophile in the Tetrahymena group i ribozyme
-
S. O. Shan D. Herschlag Probing the role of metal ions in RNA catalysis: kinetic and thermodynamic characterization of a metal ion interaction with the 2′-moiety of the guanosine nucleophile in the Tetrahymena group I ribozyme Biochemistry 1999 38 10958 10975
-
(1999)
Biochemistry
, vol.38
, pp. 10958-10975
-
-
Shan, S.O.1
Herschlag, D.2
-
21
-
-
0030886344
-
Does the Restriction Endonuclease EcoRV Employ a Two-Metal-Ion Mechanism for DNA Cleavage?
-
D. H. Groll A. Jeltsch U. Selent A. Pingoud Does the Restriction Endonuclease EcoRV Employ a Two-Metal-Ion Mechanism for DNA Cleavage? Biochemistry 1997 36 11389 11401
-
(1997)
Biochemistry
, vol.36
, pp. 11389-11401
-
-
Groll, D.H.1
Jeltsch, A.2
Selent, U.3
Pingoud, A.4
-
22
-
-
59849120791
-
Kinetic analysis of product release and metal ions in a metallonuclease
-
F. Xie C. M. Dupureur Kinetic analysis of product release and metal ions in a metallonuclease Arch. Biochem. Biophys. 2009 483 1 9
-
(2009)
Arch. Biochem. Biophys
, vol.483
, pp. 1-9
-
-
Xie, F.1
Dupureur, C.M.2
-
24
-
-
0031836886
-
A critical evaluation of metal-promoted Klenow 3′-5′ exonuclease activity: Calorimetric and kinetic analyses support a one-metal-ion mechanism
-
C. B. Black J. A. Cowan A critical evaluation of metal-promoted Klenow 3′-5′ exonuclease activity: calorimetric and kinetic analyses support a one-metal-ion mechanism JBIC, J. Biol. Inorg. Chem. 1998 3 292 299
-
(1998)
JBIC, J. Biol. Inorg. Chem
, vol.3
, pp. 292-299
-
-
Black, C.B.1
Cowan, J.A.2
-
25
-
-
0026351220
-
Role of Divalent Cations in 3′5′-Exonuclease Reaction of DNA Polymerase i
-
H. Han J. M. Rifkind A. S. Mildvan Role of Divalent Cations in 3′5′-Exonuclease Reaction of DNA Polymerase I Biochemistry 1991 30 11104 11108
-
(1991)
Biochemistry
, vol.30
, pp. 11104-11108
-
-
Han, H.1
Rifkind, J.M.2
Mildvan, A.S.3
-
27
-
-
77953362547
-
Characterizing metalloendonuclease mixed metal complexes by global kinetic analysis
-
C. B. Prasannan F. Xie C. M. Dupureur Characterizing metalloendonuclease mixed metal complexes by global kinetic analysis JBIC, J. Biol. Inorg. Chem. 2010 15 533 545
-
(2010)
JBIC, J. Biol. Inorg. Chem
, vol.15
, pp. 533-545
-
-
Prasannan, C.B.1
Xie, F.2
Dupureur, C.M.3
-
28
-
-
0028938496
-
Divalent Metal Ions at the Active Sites of the EcoRV and EcoRI Restriction Endonucleases
-
I. B. Vipond G. S. Baldwin S. E. Halford Divalent Metal Ions at the Active Sites of the EcoRV and EcoRI Restriction Endonucleases Biochemistry 1995 34 697 704
-
(1995)
Biochemistry
, vol.34
, pp. 697-704
-
-
Vipond, I.B.1
Baldwin, G.S.2
Halford, S.E.3
-
29
-
-
33748663290
-
Catalytic mechanism of endonuclease V: A catalytic and regulatory two-metal model
-
H. Feng L. Dong W. Cao Catalytic mechanism of endonuclease V: a catalytic and regulatory two-metal model Biochemistry 2006 45 10251 10259
-
(2006)
Biochemistry
, vol.45
, pp. 10251-10259
-
-
Feng, H.1
Dong, L.2
Cao, W.3
-
30
-
-
0035831316
-
Exploring the catalytic center of TaqI endonuclease: Rescuing catalytic activity by double mutations and Mn2+
-
W. Cao J. Lu Exploring the catalytic center of TaqI endonuclease: rescuing catalytic activity by double mutations and Mn2+ Biochim. Biophys. Acta, Protein Struct. Mol. Enzymol. 2001 1546 253 260
-
(2001)
Biochim. Biophys. Acta, Protein Struct. Mol. Enzymol
, vol.1546
, pp. 253-260
-
-
Cao, W.1
Lu, J.2
-
31
-
-
56749148310
-
One and Two Metal Ion Catalysis: Global Single Turnover Kinetic Analysis of PvuII Endonuclease Mechanism
-
F. Xie S. Qureshi G. A. Papadakos C. M. Dupureur One and Two Metal Ion Catalysis: Global Single Turnover Kinetic Analysis of PvuII Endonuclease Mechanism Biochemistry 2008 47 12540
-
(2008)
Biochemistry
, vol.47
, pp. 12540
-
-
Xie, F.1
Qureshi, S.2
Papadakos, G.A.3
Dupureur, C.M.4
-
32
-
-
77956312022
-
-
Academic Press, New York, pp. 1-61
-
K. Johnson, in The Enyzmes, Academic Press, New York, 1992, vol. XX, pp. 1-61
-
(1992)
The Enyzmes
-
-
Johnson, K.1
-
33
-
-
0029902679
-
Program DYNAFIT for the analysis of enzyme kinetic data: Application to HIV proteinase
-
P. Kuzmic Program DYNAFIT for the analysis of enzyme kinetic data: application to HIV proteinase Anal. Biochem. 1996 237 260 273
-
(1996)
Anal. Biochem
, vol.237
, pp. 260-273
-
-
Kuzmic, P.1
-
34
-
-
0026719686
-
Global analysis of biochemical and biophysical data
-
J. M. Beechem Global analysis of biochemical and biophysical data Methods Enzymol. 1992 210 37 54
-
(1992)
Methods Enzymol
, vol.210
, pp. 37-54
-
-
Beechem, J.M.1
-
35
-
-
0038505789
-
Estimation of parvalbumin Ca(2+)- and Mg(2+)-binding constants by global least-squares analysis of isothermal titration calorimetry data
-
M. T. Henzl J. D. Larson S. Agah Estimation of parvalbumin Ca(2+)- and Mg(2+)-binding constants by global least-squares analysis of isothermal titration calorimetry data Anal. Biochem. 2003 319 216 233
-
(2003)
Anal. Biochem
, vol.319
, pp. 216-233
-
-
Henzl, M.T.1
Larson, J.D.2
Agah, S.3
-
36
-
-
0034725527
-
PvuII endonuclease contains two calcium ions in active sites
-
J. R. Horton X. Cheng PvuII endonuclease contains two calcium ions in active sites J. Mol. Biol. 2000 300 1049 1056
-
(2000)
J. Mol. Biol
, vol.300
, pp. 1049-1056
-
-
Horton, J.R.1
Cheng, X.2
-
37
-
-
2242427108
-
Multiple metal ions drive DNA association by PvuII endonuclease
-
L. H. Conlan C. M. Dupureur Multiple metal ions drive DNA association by PvuII endonuclease Biochemistry 2002 41 14848 14855
-
(2002)
Biochemistry
, vol.41
, pp. 14848-14855
-
-
Conlan, L.H.1
Dupureur, C.M.2
-
38
-
-
0032733278
-
Quantitative evaluation of metal ion binding to PvuII restriction endonuclease
-
T. J. José L. H. Conlan C. M. Dupureur Quantitative evaluation of metal ion binding to PvuII restriction endonuclease JBIC, J. Biol. Inorg. Chem. 1999 4 814 823
-
(1999)
JBIC, J. Biol. Inorg. Chem
, vol.4
, pp. 814-823
-
-
José, T.J.1
Conlan, L.H.2
Dupureur, C.M.3
-
40
-
-
10044251064
-
Lanthanide spectroscopic studies of the dinuclear and Mg(ii)-dependent PvuII restriction endonuclease
-
L. M. Bowen G. Muller J. P. Riehl C. M. Dupureur Lanthanide spectroscopic studies of the dinuclear and Mg(ii)-dependent PvuII restriction endonuclease Biochemistry 2004 43 15286 15295
-
(2004)
Biochemistry
, vol.43
, pp. 15286-15295
-
-
Bowen, L.M.1
Muller, G.2
Riehl, J.P.3
Dupureur, C.M.4
-
41
-
-
0029410817
-
Structure-Energy Analysis of the Role of Metal Ions in Phosphodiester Bond Hydrolysis by DNA Polymerase i
-
M. Fothergill M. F. Goodman J. Petruska A. Warshel Structure-Energy Analysis of the Role of Metal Ions in Phosphodiester Bond Hydrolysis by DNA Polymerase I J. Am. Chem. Soc. 1995 117 11619 11627
-
(1995)
J. Am. Chem. Soc
, vol.117
, pp. 11619-11627
-
-
Fothergill, M.1
Goodman, M.F.2
Petruska, J.3
Warshel, A.4
-
42
-
-
34250773963
-
The role of metal ions in phosphate ester hydrolysis
-
S. C. Kamerlin J. Wilkie The role of metal ions in phosphate ester hydrolysis Org. Biomol. Chem. 2007 5 2098 2108
-
(2007)
Org. Biomol. Chem
, vol.5
, pp. 2098-2108
-
-
Kamerlin, S.C.1
Wilkie, J.2
-
43
-
-
70349784082
-
Catalytic mechanism of DNA backbone cleavage by the restriction enzyme EcoRV: A quantum mechanical/molecular mechanical analysis
-
P. Imhof S. Fischer J. C. Smith Catalytic mechanism of DNA backbone cleavage by the restriction enzyme EcoRV: a quantum mechanical/molecular mechanical analysis Biochemistry 2009 48 9061 9075
-
(2009)
Biochemistry
, vol.48
, pp. 9061-9075
-
-
Imhof, P.1
Fischer, S.2
Smith, J.C.3
-
44
-
-
33846165757
-
Metal-binding sites at the active site of restriction endonuclease BamHI can conform to a one-ion mechanism
-
L. Mones I. Simon M. Fuxreiter Metal-binding sites at the active site of restriction endonuclease BamHI can conform to a one-ion mechanism Biol. Chem. 2007 388 73 78
-
(2007)
Biol. Chem
, vol.388
, pp. 73-78
-
-
Mones, L.1
Simon, I.2
Fuxreiter, M.3
-
45
-
-
0031717755
-
The role of metals in catalysis by the restriction endonuclease BamHI
-
H. Viadiu A. K. Aggarwal The role of metals in catalysis by the restriction endonuclease BamHI Nat. Struct. Biol. 1998 5 910 916
-
(1998)
Nat. Struct. Biol
, vol.5
, pp. 910-916
-
-
Viadiu, H.1
Aggarwal, A.K.2
-
46
-
-
37249013330
-
Probing the two-metal ion mechanism in the restriction endonuclease BamHI
-
L. Mones P. Kulhanek J. Florian I. Simon M. Fuxreiter Probing the two-metal ion mechanism in the restriction endonuclease BamHI Biochemistry 2007 46 14514 14523
-
(2007)
Biochemistry
, vol.46
, pp. 14514-14523
-
-
Mones, L.1
Kulhanek, P.2
Florian, J.3
Simon, I.4
Fuxreiter, M.5
-
47
-
-
33644970162
-
Double-metal-ion/single-metal-ion mechanisms of the cleavage reaction of ribozymes: First-principles molecular dynamics simulations of a fully hydrated model system
-
M. Boero M. Tateno K. Terakura A. Oshiyama Double-metal-ion/single-metal- ion mechanisms of the cleavage reaction of ribozymes: first-principles molecular dynamics simulations of a fully hydrated model system J. Chem. Theory Comput. 2005 1 925 934
-
(2005)
J. Chem. Theory Comput
, vol.1
, pp. 925-934
-
-
Boero, M.1
Tateno, M.2
Terakura, K.3
Oshiyama, A.4
-
48
-
-
33644968200
-
Two-metal ion mechanism for hammerhead-ribozyme catalysis
-
F. Leclerc M. Karplus Two-metal ion mechanism for hammerhead-ribozyme catalysis J. Phys. Chem. B 2006 110 3395 3409
-
(2006)
J. Phys. Chem. B
, vol.110
, pp. 3395-3409
-
-
Leclerc, F.1
Karplus, M.2
-
49
-
-
0035846581
-
Probing the general base catalysis in the first step of BamHI action by computer simulations
-
M. Fuxreiter R. Osman Probing the general base catalysis in the first step of BamHI action by computer simulations Biochemistry 2001 40 15017 15023
-
(2001)
Biochemistry
, vol.40
, pp. 15017-15023
-
-
Fuxreiter, M.1
Osman, R.2
-
50
-
-
77952542578
-
Nucleophile activation in PD.(D/E)xK metallonucleases: An experimental and computational pK(a) study
-
F. Xie J. M. Briggs C. M. Dupureur Nucleophile activation in PD.(D/E)xK metallonucleases: An experimental and computational pK(a) study J. Inorg. Biochem. 2010 104 6 665 672
-
(2010)
J. Inorg. Biochem
, vol.104
, Issue.6
, pp. 665-672
-
-
Xie, F.1
Briggs, J.M.2
Dupureur, C.M.3
-
51
-
-
68849131193
-
Insights on nuclease mechanism: The role of proximal ammonium group on phosphate esters cleavage
-
R. Bonomi G. Saielli U. Tonellato P. Scrimin F. Mancin Insights on nuclease mechanism: the role of proximal ammonium group on phosphate esters cleavage J. Am. Chem. Soc. 2009 131 11278 11279
-
(2009)
J. Am. Chem. Soc
, vol.131
, pp. 11278-11279
-
-
Bonomi, R.1
Saielli, G.2
Tonellato, U.3
Scrimin, P.4
Mancin, F.5
-
52
-
-
0037442328
-
Physical and kinetic analysis of the cooperative role of metal ions in catalysis of phosphodiester cleavage by a dinuclear Zn(ii) complex
-
O. Iranzo A. Y. Kovalevsky J. R. Morrow J. P. Richard Physical and kinetic analysis of the cooperative role of metal ions in catalysis of phosphodiester cleavage by a dinuclear Zn(ii) complex J. Am. Chem. Soc. 2003 125 1988 1993
-
(2003)
J. Am. Chem. Soc
, vol.125
, pp. 1988-1993
-
-
Iranzo, O.1
Kovalevsky, A.Y.2
Morrow, J.R.3
Richard, J.P.4
-
53
-
-
35048884731
-
Rapid three-step cleavage of RNA and DNA model systems promoted by a dinuclear Cu(ii) complex in methanol. energetic origins of the catalytic efficacy
-
Z. L. Lu C. T. Liu A. A. Neverov R. S. Brown Rapid three-step cleavage of RNA and DNA model systems promoted by a dinuclear Cu(ii) complex in methanol. energetic origins of the catalytic efficacy J. Am. Chem. Soc. 2007 129 11642 11652
-
(2007)
J. Am. Chem. Soc
, vol.129
, pp. 11642-11652
-
-
Lu, Z.L.1
Liu, C.T.2
Neverov, A.A.3
Brown, R.S.4
-
54
-
-
1842479403
-
Synthetic metallonucleases for RNA cleavage
-
J. R. Morrow O. Iranzo Synthetic metallonucleases for RNA cleavage Curr. Opin. Chem. Biol. 2004 8 192 200
-
(2004)
Curr. Opin. Chem. Biol
, vol.8
, pp. 192-200
-
-
Morrow, J.R.1
Iranzo, O.2
-
55
-
-
33748234206
-
Hydrolysis of a phosphate diester doubly coordinated to a dinuclear cobalt(iii) complex: A novel mechanism
-
D. Wahnon A. Lebuis J. Chin Hydrolysis of a phosphate diester doubly coordinated to a dinuclear cobalt(iii) complex: A novel mechanism Angew. Chem., Int. Ed. Engl. 1995 34 2412 2414
-
(1995)
Angew. Chem., Int. Ed. Engl
, vol.34
, pp. 2412-2414
-
-
Wahnon, D.1
Lebuis, A.2
Chin, J.3
-
56
-
-
0034705337
-
A revised mechanism for the alkaline phosphatase reaction involving three metal ions
-
B. Stec K. M. Holtz E. R. Kantrowitz A revised mechanism for the alkaline phosphatase reaction involving three metal ions J. Mol. Biol. 2000 299 1303 1311
-
(2000)
J. Mol. Biol
, vol.299
, pp. 1303-1311
-
-
Stec, B.1
Holtz, K.M.2
Kantrowitz, E.R.3
-
57
-
-
0025763145
-
Crystal structure of Penicillium Citrinum P1 nuclease at 2.8 Å resolution
-
A. Volbeda A. Lahm F. Sakiyama D. Suck Crystal structure of Penicillium Citrinum P1 nuclease at 2.8 Å resolution EMBO J. 1991 10 1607 1618
-
(1991)
EMBO J
, vol.10
, pp. 1607-1618
-
-
Volbeda, A.1
Lahm, A.2
Sakiyama, F.3
Suck, D.4
-
58
-
-
0035066732
-
The homing endonuclease I-CreI uses three metals, one of which is shared between the two active sites
-
B. S. Chevalier R. J. Monnat B. L. Stoddard The homing endonuclease I-CreI uses three metals, one of which is shared between the two active sites Nat. Struct. Biol. 2001 8 312 316
-
(2001)
Nat. Struct. Biol
, vol.8
, pp. 312-316
-
-
Chevalier, B.S.1
Monnat, R.J.2
Stoddard, B.L.3
-
61
-
-
56949087215
-
Comparative enzymology in the alkaline phosphatase superfamily to determine the catalytic role of an active-site metal ion
-
J. G. Zalatan T. D. Fenn D. Herschlag Comparative enzymology in the alkaline phosphatase superfamily to determine the catalytic role of an active-site metal ion J. Mol. Biol. 2008 384 1174 1189
-
(2008)
J. Mol. Biol
, vol.384
, pp. 1174-1189
-
-
Zalatan, J.G.1
Fenn, T.D.2
Herschlag, D.3
-
62
-
-
0028988416
-
2+ binding to the active site of EcoRV endonuclease: A crystallographic study of complexes with substrate and product DNA at 2 Å resolution
-
2+ binding to the active site of EcoRV endonuclease: A crystallographic study of complexes with substrate and product DNA at 2 Å resolution Biochemistry 1995 34 683 696
-
(1995)
Biochemistry
, vol.34
, pp. 683-696
-
-
Kostrewa, D.1
Winkler, F.K.2
-
64
-
-
21244451435
-
Crystal structures of RNase H bound to an RNA/DNA hybrid: Substrate specificity and metal-dependent catalysis
-
M. Nowotny S. A. Gaidamakov R. J. Crouch W. Yang Crystal structures of RNase H bound to an RNA/DNA hybrid: substrate specificity and metal-dependent catalysis Cell 2005 121 1005 1016
-
(2005)
Cell
, vol.121
, pp. 1005-1016
-
-
Nowotny, M.1
Gaidamakov, S.A.2
Crouch, R.J.3
Yang, W.4
-
65
-
-
0030002197
-
A helical arch allowing single-stranded DNA to thread through T5 5'-exonuclease
-
T. A. Ceska J. R. Sayers G. Stier D. Suck A helical arch allowing single-stranded DNA to thread through T5 5'-exonuclease Nature 1996 382 90 93
-
(1996)
Nature
, vol.382
, pp. 90-93
-
-
Ceska, T.A.1
Sayers, J.R.2
Stier, G.3
Suck, D.4
-
66
-
-
0033634859
-
Unexpected structural diversity in DNA recombination: The restriction endonuclease connection
-
A. B. Hickman Y. Li S. V. Mathew E. W. May N. L. Craig F. Dyda Unexpected structural diversity in DNA recombination: the restriction endonuclease connection Mol. Cell 2000 5 1025 1034
-
(2000)
Mol. Cell
, vol.5
, pp. 1025-1034
-
-
Hickman, A.B.1
Li, Y.2
Mathew, S.V.3
May, E.W.4
Craig, N.L.5
Dyda, F.6
-
68
-
-
25844494491
-
MutH complexed with hemi- and unmethylated DNAs: Coupling base recognition and DNA cleavage
-
J. Y. Lee J. Chang N. Joseph R. Ghirlando D. N. Rao W. Yang MutH complexed with hemi- and unmethylated DNAs: Coupling base recognition and DNA cleavage Mol. Cell 2005 20 155 166
-
(2005)
Mol. Cell
, vol.20
, pp. 155-166
-
-
Lee, J.Y.1
Chang, J.2
Joseph, N.3
Ghirlando, R.4
Rao, D.N.5
Yang, W.6
-
69
-
-
24644492337
-
Structural evidence for a two-metal-ion mechanism of group i intron splicing
-
M. R. Stahley S. A. Strobel Structural evidence for a two-metal-ion mechanism of group I intron splicing Science 2005 309 1587 1590
-
(2005)
Science
, vol.309
, pp. 1587-1590
-
-
Stahley, M.R.1
Strobel, S.A.2
-
70
-
-
0033529716
-
Structure of the DNA repair enzyme endonuclease IV and its DNA complex: Double-nucleotide flipping at abasic sites and three-metal-ion catalysis
-
D. J. Hosfield Y. Guan B. J. Haas R. P. Cunningham J. A. Tainer Structure of the DNA repair enzyme endonuclease IV and its DNA complex: Double-nucleotide flipping at abasic sites and three-metal-ion catalysis Cell 1999 98 397 408
-
(1999)
Cell
, vol.98
, pp. 397-408
-
-
Hosfield, D.J.1
Guan, Y.2
Haas, B.J.3
Cunningham, R.P.4
Tainer, J.A.5
-
71
-
-
0030476765
-
Capturing the structure of a catalytic RNA intermediate: The hammerhead ribozyme
-
W. G. Scott J. B. Murray J. R. Arnold B. L. Stoddard A. Klug Capturing the structure of a catalytic RNA intermediate: the hammerhead ribozyme Science 1996 274 2065 2069
-
(1996)
Science
, vol.274
, pp. 2065-2069
-
-
Scott, W.G.1
Murray, J.B.2
Arnold, J.R.3
Stoddard, B.L.4
Klug, A.5
-
72
-
-
0032708112
-
A novel endonuclease mechanism directly visualized for I-PpoI
-
E. A. Galburt B. Chevalier W. Tang M. S. Jurica K. E. Flick R. J. Monnat, Jr. B. L. Stoddard A novel endonuclease mechanism directly visualized for I-PpoI Nat. Struct. Biol. 1999 6 1096 1099
-
(1999)
Nat. Struct. Biol
, vol.6
, pp. 1096-1099
-
-
Galburt, E.A.1
Chevalier, B.2
Tang, W.3
Jurica, M.S.4
Flick, K.E.5
Monnat, Jr.R.J.6
Stoddard, B.L.7
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