-
1
-
-
0033956062
-
REBASE: Restriction enzymes and methylases
-
Roberts, R.J. & Macelis, D. REBASE: restriction enzymes and methylases. Nucleic Acids Res. 28, 306-307 (2000).
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 306-307
-
-
Roberts, R.J.1
Macelis, D.2
-
2
-
-
0028988946
-
The Sfil restriction endonuclease makes a four-strcind DNA break at two copies of its recognition sequence
-
Wentzell, L.M., Nobbs, T.J. & Halford, S.E. The Sfil restriction endonuclease makes a four-strcind DNA break at two copies of its recognition sequence. J. Mol. Biol. 248, 581-595 (1995).
-
(1995)
J. Mol. Biol.
, vol.248
, pp. 581-595
-
-
Wentzell, L.M.1
Nobbs, T.J.2
Halford, S.E.3
-
3
-
-
0033520420
-
The Cfr10I restriction enzyme is functional in a tetrameric form
-
Siksnys, V., et al. The Cfr10I restriction enzyme is functional in a tetrameric form. J. Mol. Biol. 291, 1105-1118 (1999).
-
(1999)
J. Mol. Biol.
, vol.291
, pp. 1105-1118
-
-
Siksnys, V.1
-
4
-
-
0033579567
-
Reactions of type II restriction endonucleases with 8-base pair recognition sites
-
Bilcock, D.T., Daniels, L.E., Bath, A.J. & Halford, S.E. Reactions of type II restriction endonucleases with 8-base pair recognition sites. J. Biol. Chem. 274 36379-36386 (1999).
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 36379-36386
-
-
Bilcock, D.T.1
Daniels, L.E.2
Bath, A.J.3
Halford, S.E.4
-
5
-
-
0025801446
-
Nael endonuclease binding to pBR322 DNA induces looping
-
Topal, M.D., Thresher, R.J., Conrad, M. & Griffith, J. Nael endonuclease binding to pBR322 DNA induces looping. Biochemistry 30, 2006-2010 (1991).
-
(1991)
Biochemistry
, vol.30
, pp. 2006-2010
-
-
Topal, M.D.1
Thresher, R.J.2
Conrad, M.3
Griffith, J.4
-
6
-
-
0024284313
-
EcoRII can be activated to cleave refractory DNA recognition sites
-
Krüger, D.H., Barcak, G.J., Reuter, M. & Smith, H.O. EcoRII can be activated to cleave refractory DNA recognition sites. Nucleic Acids Res. 16, 3997-4008 (1988).
-
(1988)
Nucleic Acids Res.
, vol.16
, pp. 3997-4008
-
-
Krüger, D.H.1
Barcak, G.J.2
Reuter, M.3
Smith, H.O.4
-
7
-
-
0026704310
-
Construction of a Neisseria gonorrhoeae MS11 derivative deficient in NgoMI restriction and modification
-
Stein, D.C., Chien, R. & Seifert, H.S. Construction of a Neisseria gonorrhoeae MS11 derivative deficient in NgoMI restriction and modification. J. Bacteriol. 174, 4899-4906 (1992).
-
(1992)
J. Bacteriol.
, vol.174
, pp. 4899-4906
-
-
Stein, D.C.1
Chien, R.2
Seifert, H.S.3
-
8
-
-
0028932881
-
Structure and function of restriction endonucleases
-
Aggarwal, A.K. Structure and function of restriction endonucleases. Curr. Opin. Struct. Biol. 5, 11-19 (1995).
-
(1995)
Curr. Opin. Struct. Biol.
, vol.5
, pp. 11-19
-
-
Aggarwal, A.K.1
-
9
-
-
0022964809
-
Structure of the DNA-EcoRI endonuclease recognition complex at 3 Å resolution
-
McClarin, J.A., et al. Structure of the DNA-EcoRI endonuclease recognition complex at 3 Å resolution. Science 234, 1526-1541 (1986).
-
(1986)
Science
, vol.234
, pp. 1526-1541
-
-
McClarin, J.A.1
-
10
-
-
0029048413
-
Structure of Bam HI endonuclease bound to DNA: Partial folding and unfolding on DNA binding
-
Newman, M., Strzelecka, T., Dorner, L.F., Schildkraut, I. & Aggarwal, A.K. Structure of Bam HI endonuclease bound to DNA: partial folding and unfolding on DNA binding. Science 269, 656-663 (1995).
-
(1995)
Science
, vol.269
, pp. 656-663
-
-
Newman, M.1
Strzelecka, T.2
Dorner, L.F.3
Schildkraut, I.4
Aggarwal, A.K.5
-
11
-
-
0033229820
-
Crystal structure of MunI restriction endonuclease in complex with cognate DNA at 1.7 Å resolution
-
Deibert, M., Grazulis, S., Janulaitis, A., Siksnys, V. & Huber, R. Crystal structure of MunI restriction endonuclease in complex with cognate DNA at 1.7 Å resolution. EMBO J. 18, 5805-5816 (1999).
-
(1999)
EMBO J.
, vol.18
, pp. 5805-5816
-
-
Deibert, M.1
Grazulis, S.2
Janulaitis, A.3
Siksnys, V.4
Huber, R.5
-
12
-
-
0025187081
-
Refinement of EcoRI endonuclease crystal structure: A revised protein chain tracing
-
Kim, Y.C., Grable, J.C., Love, R., Greene, P.J. & Rosenberg, J.M. Refinement of EcoRI endonuclease crystal structure: a revised protein chain tracing. Science 249, 1307-1309 (1990).
-
(1990)
Science
, vol.249
, pp. 1307-1309
-
-
Kim, Y.C.1
Grable, J.C.2
Love, R.3
Greene, P.J.4
Rosenberg, J.M.5
-
13
-
-
0027159254
-
The crystal structure of EcoRV endonuclease and of its complexes with cognate and non-cognate DNA fragments
-
Winkler, F.K., et al. The crystal structure of EcoRV endonuclease and of its complexes with cognate and non-cognate DNA fragments. EMBO J. 12, 1781-1795 (1993).
-
(1993)
EMBO J.
, vol.12
, pp. 1781-1795
-
-
Winkler, F.K.1
-
14
-
-
0028024850
-
Structure of PvuII endonuclease with cognate DNA
-
Cheng, X., Balendiran, K., Schildkraut, I. & Anderson, J.E. Structure of PvuII endonuclease with cognate DNA. EMBO J. 13, 3927-3935 (1994).
-
(1994)
EMBO J.
, vol.13
, pp. 3927-3935
-
-
Cheng, X.1
Balendiran, K.2
Schildkraut, I.3
Anderson, J.E.4
-
15
-
-
0032530311
-
Crystal structure of restriction endonuclease Bg/I bound to its interrupted DNA recognition sequence
-
Newman, M., et al. Crystal structure of restriction endonuclease Bg/I bound to its interrupted DNA recognition sequence. EMBO J. 17, 5466-5476 (1998).
-
(1998)
EMBO J.
, vol.17
, pp. 5466-5476
-
-
Newman, M.1
-
16
-
-
0029995002
-
Crystal structure of Citrobacter freundii restriction endonuclease Cfr10I at 2.15 Å resolution
-
Bozic, D., Grazulis, S., Siksnys, V. & Huber, R. Crystal structure of Citrobacter freundii restriction endonuclease Cfr10I at 2.15 Å resolution. J. Mol. Biol. 255, 176-186 (1996).
-
(1996)
J. Mol. Biol.
, vol.255
, pp. 176-186
-
-
Bozic, D.1
Grazulis, S.2
Siksnys, V.3
Huber, R.4
-
17
-
-
0033981010
-
Understanding the immutability of restriction enzymes: Crystal structure of Bg/II and its DNA substrate at 1.5 Å resolution
-
Lucas, C.M., Kucera, R., Schildkraut, I. & Aggarwal, A. Understanding the immutability of restriction enzymes: crystal structure of Bg/II and its DNA substrate at 1.5 Å resolution. Nature Struct. Biol. 7, 134-140 (2000).
-
(2000)
Nature Struct. Biol.
, vol.7
, pp. 134-140
-
-
Lucas, C.M.1
Kucera, R.2
Schildkraut, I.3
Aggarwal, A.4
-
18
-
-
0032486108
-
Structure-based redesign of the catalytic/metal binding site of Cfr10I restriction endonuclease reveals the importance of spatial rather than sequence conservation of active centre residues
-
Skirgaila, R., Grazulis, S., Bozic, D., Huber, R. & Siksnys, V. Structure-based redesign of the catalytic/metal binding site of Cfr10I restriction endonuclease reveals the importance of spatial rather than sequence conservation of active centre residues. J. Mol. Biol. 279, 473-481 (1998).
-
(1998)
J. Mol. Biol.
, vol.279
, pp. 473-481
-
-
Skirgaila, R.1
Grazulis, S.2
Bozic, D.3
Huber, R.4
Siksnys, V.5
-
19
-
-
0027218657
-
Substrate-assisted catalysis in the cleavage of DNA by the EcoRI and EcoRV restriction enzymes
-
Jeltsch, A., Alves, J., Wolfes, H., Maass, G. & Pingoud, A. Substrate-assisted catalysis in the cleavage of DNA by the EcoRI and EcoRV restriction enzymes. Proc. Natl. Acad. Sci. USA 90, 8499-8503 (1993).
-
(1993)
Proc. Natl. Acad. Sci. USA
, vol.90
, pp. 8499-8503
-
-
Jeltsch, A.1
Alves, J.2
Wolfes, H.3
Maass, G.4
Pingoud, A.5
-
20
-
-
0028988416
-
2+ binding to the active site of EcoRV endonuclease: A crystallographic study of complexes with substrate and product DNA at 2 Å resolution
-
2+ binding to the active site of EcoRV endonuclease: a crystallographic study of complexes with substrate and product DNA at 2 Å resolution. Biochemistry 34, 683-696 (1995).
-
(1995)
Biochemistry
, vol.34
, pp. 683-696
-
-
Kostrewa, D.1
Winkler, F.K.2
-
21
-
-
0028938496
-
Divalent metal ions at the active sites of the EcoRV and EcoRI restriction endonucleases
-
Vipond, I.B., Baldwin, G.S. & Halford, S.E. Divalent metal ions at the active sites of the EcoRV and EcoRI restriction endonucleases. Biochemistry 34, 697-704 (1995).
-
(1995)
Biochemistry
, vol.34
, pp. 697-704
-
-
Vipond, I.B.1
Baldwin, G.S.2
Halford, S.E.3
-
22
-
-
0031717755
-
The role of metals in catalysis by the restriction endonuclease BamHI
-
Viadiu, H. & Aggarwal, A.K. The role of metals in catalysis by the restriction endonuclease BamHI. Nature Struct. Biol. 5, 910-916 (1998).
-
(1998)
Nature Struct. Biol.
, vol.5
, pp. 910-916
-
-
Viadiu, H.1
Aggarwal, A.K.2
-
23
-
-
0026019625
-
Structural basis for the 3′-5′ exonuclease activity of Escherichia coli DNA polymerase I: A two metal ion mechanism
-
Beese, L.S. & Steitz, T.A. Structural basis for the 3′-5′ exonuclease activity of Escherichia coli DNA polymerase I: a two metal ion mechanism. EMBO J. 10, 25-33 (1991).
-
(1991)
EMBO J.
, vol.10
, pp. 25-33
-
-
Beese, L.S.1
Steitz, T.A.2
-
24
-
-
0030985132
-
Rapid-reaction analysis of plasmid DNA cleavage by the EcoRV restriction endonuclease
-
Erskine, S.G., Baldwin, G.S. & Halford, S.E. Rapid-reaction analysis of plasmid DNA cleavage by the EcoRV restriction endonuclease. Biochemistry 36, 7567-7576 (1997).
-
(1997)
Biochemistry
, vol.36
, pp. 7567-7576
-
-
Erskine, S.G.1
Baldwin, G.S.2
Halford, S.E.3
-
25
-
-
0033616705
-
Plasmid DNA cleavage by MunI restriction enzyme: Single-turnover and steady-state kinetic analysis
-
Sasnauskas, G., Jeltsch, A., Pingoud, A. & Siksnys, V. Plasmid DNA cleavage by MunI restriction enzyme: single-turnover and steady-state kinetic analysis. Biochemistry 38, 4028-4036 (1999).
-
(1999)
Biochemistry
, vol.38
, pp. 4028-4036
-
-
Sasnauskas, G.1
Jeltsch, A.2
Pingoud, A.3
Siksnys, V.4
-
26
-
-
0032983155
-
Specificity from the synapsis of DNA elements by the Sfil endonuclease
-
Embleton, M.L., Williams, S.A., Watson, M.A. & Halford, S.E. Specificity from the synapsis of DNA elements by the Sfil endonuclease. J. Mol. Biol. 289 785-797 (1999).
-
(1999)
J. Mol. Biol.
, vol.289
, pp. 785-797
-
-
Embleton, M.L.1
Williams, S.A.2
Watson, M.A.3
Halford, S.E.4
-
27
-
-
0029091376
-
DNA cleavage at two recognition sites by the Sfil restriction endonuclease: Salt dependence of cis and trans interactions between distant DNA sites
-
Nobbs, T.J. & Halford, S.E. DNA cleavage at two recognition sites by the Sfil restriction endonuclease: salt dependence of cis and trans interactions between distant DNA sites. J. Mol. Biol. 252, 399-411 (1995).
-
(1995)
J. Mol. Biol.
, vol.252
, pp. 399-411
-
-
Nobbs, T.J.1
Halford, S.E.2
-
28
-
-
0032555293
-
DNA looping by the Sfil restriction endonuclease
-
Wentzell, L.M. & Halford, S.E. DNA looping by the Sfil restriction endonuclease. J. Mol. Biol. 281, 433-444 (1998).
-
(1998)
J. Mol. Biol.
, vol.281
, pp. 433-444
-
-
Wentzell, L.M.1
Halford, S.E.2
-
29
-
-
0028988946
-
The Sfil restriction endonuclease makes a four-strand DNA break at two copies of its recognition sequence
-
Wentzell, L.M., Nobbs, T.J. & Halford, S.E. The Sfil restriction endonuclease makes a four-strand DNA break at two copies of its recognition sequence. J. Mol. Biol. 248, 581-595 (1995).
-
(1995)
J. Mol. Biol.
, vol.248
, pp. 581-595
-
-
Wentzell, L.M.1
Nobbs, T.J.2
Halford, S.E.3
-
30
-
-
0031059866
-
Processing of X-ray diffraction data collected in oscillation mode
-
Otwinowski, Z. & Minor, W. Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol. 276, 307-326 (1996).
-
(1996)
Methods Enzymol.
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
31
-
-
0028103275
-
The CCP4 suite: Programs for protein crystallography
-
Collaborative Computational Project, Number4
-
Collaborative Computational Project, Number4. The CCP4 Suite: programs for protein crystallography. Acta Crystallogr. D 50, 760-763 (1994).
-
(1994)
Acta Crystallogr. D
, vol.50
, pp. 760-763
-
-
-
32
-
-
0003292939
-
SHARP: A maximum-likelihood heavy-atom parameter refinement and phasing program for the MIR and MAD methods
-
La Fortelle, E.d., Irwin, J.J. & Bricogne, G. SHARP: a maximum-likelihood heavy-atom parameter refinement and phasing program for the MIR and MAD methods. Crystallogr. Computing 7, 1-9 (1997).
-
(1997)
Crystallogr. Computing
, vol.7
, pp. 1-9
-
-
La Fortelle, E.D.1
Irwin, J.J.2
Bricogne, G.3
-
33
-
-
0030038464
-
Methods used in the structure determination of the bovine mitochondrial F1 ATPase
-
Abrahams, J.P. & Leslie, A.G.W. Methods used in the structure determination of the bovine mitochondrial F1 ATPase. Acta Crystallogr. D 52, 30-42 (1996).
-
(1996)
Acta Crystallogr. D
, vol.52
, pp. 30-42
-
-
Abrahams, J.P.1
Leslie, A.G.W.2
-
34
-
-
84889120137
-
Improved methods for building protein models in electron density maps and the location of errors in these models
-
Jones, T.A., Zou, J.Y., Cowan, S.W. & Kjeldgaard, M. Improved methods for building protein models in electron density maps and the location of errors in these models. Acta Crystallogr. A 47, 110-119 (1991).
-
(1991)
Acta Crystallogr. A
, vol.47
, pp. 110-119
-
-
Jones, T.A.1
Zou, J.Y.2
Cowan, S.W.3
Kjeldgaard, M.4
-
35
-
-
3543012707
-
Crystallography & NMR system: A new software suite for macromolecular structure determination
-
Brünger, A.T., et al. Crystallography & NMR system: a new software suite for macromolecular structure determination. Acta Crystallogr. D 54, 905-921 (1998).
-
(1998)
Acta Crystallogr. D
, vol.54
, pp. 905-921
-
-
Brünger, A.T.1
-
36
-
-
0000243829
-
PROCHECK: A program to check the stereochemical quality of protein structures
-
Laskowski, R.A., McArthur, M.W., Moss, D.S. & Thornton, J.M. PROCHECK: a program to check the stereochemical quality of protein structures J. Appl. Crystallogr. 26, 283-291 (1993)
-
(1993)
J. Appl. Crystallogr.
, vol.26
, pp. 283-291
-
-
Laskowski, R.A.1
McArthur, M.W.2
Moss, D.S.3
Thornton, J.M.4
-
37
-
-
0031574026
-
NUCPLOT: A program to generate schematic diagrams of protein-nucleic acid interactions
-
Luscombe, N.M., Laskowski, R.A. & Thornton, J.M. NUCPLOT: a program to generate schematic diagrams of protein-nucleic acid interactions. Nucleic Acids Res. 25, 4940-4945 (1997).
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 4940-4945
-
-
Luscombe, N.M.1
Laskowski, R.A.2
Thornton, J.M.3
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