메뉴 건너뛰기




Volumn 186, Issue , 2014, Pages 31-45

Exploring the role of receptor flexibility in structure-based drug discovery

Author keywords

Accelerated molecular dynamics; Allostery; Computer aided drug design; Conformational selection; Molecular dynamics; Receptor flexibility

Indexed keywords

ALLOSTERISM; BINDING AFFINITY; BINDING SITE; COMPUTER AIDED DESIGN; CONFORMATIONAL TRANSITION; DRUG DESIGN; DRUG DEVELOPMENT; DRUG PROTEIN BINDING; DRUG STRUCTURE; LIGAND BINDING; MOLECULAR DOCKING; MOLECULAR DYNAMICS; MOLECULAR INTERACTION; PRINCIPAL COMPONENT ANALYSIS; PRIORITY JOURNAL; PROTEIN CONFORMATION; PROTEIN PROTEIN INTERACTION; REVIEW; SIGNAL TRANSDUCTION; VIRTUAL REALITY;

EID: 84894256162     PISSN: 03014622     EISSN: 18734200     Source Type: Journal    
DOI: 10.1016/j.bpc.2013.10.007     Document Type: Review
Times cited : (128)

References (153)
  • 1
    • 80053539881 scopus 로고    scopus 로고
    • Conformational selection or induced fit? 50 years of debate resolved
    • J.P. Changeux, and S. Edelstein Conformational selection or induced fit? 50 years of debate resolved F1000 Biol. Rep. 3 2011
    • (2011) F1000 Biol. Rep. , vol.3
    • Changeux, J.P.1    Edelstein, S.2
  • 2
    • 70350340728 scopus 로고    scopus 로고
    • The role of dynamic conformational ensembles in biomolecular recognition
    • D.D. Boehr, R. Nussinov, and P.E. Wright The role of dynamic conformational ensembles in biomolecular recognition Nat. Chem. Biol. 5 2009 789 796
    • (2009) Nat. Chem. Biol. , vol.5 , pp. 789-796
    • Boehr, D.D.1    Nussinov, R.2    Wright, P.E.3
  • 3
    • 77957231785 scopus 로고    scopus 로고
    • Induced fit, conformational selection and independent dynamic segments: An extended view of binding events
    • P. Csermely, R. Palotai, and R. Nussinov Induced fit, conformational selection and independent dynamic segments: an extended view of binding events Trends Biochem. Sci. 35 2010 539 546
    • (2010) Trends Biochem. Sci. , vol.35 , pp. 539-546
    • Csermely, P.1    Palotai, R.2    Nussinov, R.3
  • 4
    • 0001858251 scopus 로고
    • Application of a theory of enzyme specificity to protein synthesis
    • D. Koshland Application of a theory of enzyme specificity to protein synthesis Proc. Natl. Acad. Sci. U. S. A. 44 1958 98
    • (1958) Proc. Natl. Acad. Sci. U. S. A. , vol.44 , pp. 98
    • Koshland, D.1
  • 5
    • 78651189765 scopus 로고
    • On the nature of allosteric transitions: A plausible model
    • J. Monod, J. Wyman, and J.P. Changeux On the nature of allosteric transitions: a plausible model J. Mol. Biol. 12 1965 88 118
    • (1965) J. Mol. Biol. , vol.12 , pp. 88-118
    • Monod, J.1    Wyman, J.2    Changeux, J.P.3
  • 6
    • 0035432947 scopus 로고    scopus 로고
    • Molecular recognition by induced fit: How fit is the concept?
    • H.R. Bosshard Molecular recognition by induced fit: how fit is the concept? Physiology 16 2001 171 173 (Pubitemid 33713265)
    • (2001) News in Physiological Sciences , vol.16 , Issue.8 , pp. 171-173
    • Bosshard, H.R.1
  • 9
    • 0033056708 scopus 로고    scopus 로고
    • Folding funnels, binding funnels, and protein function
    • C.-J. Tsai, S. Kumar, B. Ma, and R. Nussinov Folding funnels, binding funnels, and protein function Protein Sci. 8 1999 1181 1190 (Pubitemid 29264948)
    • (1999) Protein Science , vol.8 , Issue.6 , pp. 1181-1190
    • Tsai, C.-J.1    Kumar, S.2    Ma, B.3    Nussinov, R.4
  • 10
    • 30044434744 scopus 로고    scopus 로고
    • Structural changes involved in protein binding correlate with intrinsic motions of proteins in the unbound state
    • DOI 10.1073/pnas.0507603102
    • D. Tobi, and I. Bahar Structural changes involved in protein binding correlate with intrinsic motions of proteins in the unbound state Proc. Natl. Acad. Sci. U. S. A. 102 2005 18908 18913 (Pubitemid 43049540)
    • (2005) Proceedings of the National Academy of Sciences of the United States of America , vol.102 , Issue.52 , pp. 18908-18913
    • Tobi, D.1    Bahar, I.2
  • 11
    • 73349117207 scopus 로고    scopus 로고
    • Conformational selection and induced fit mechanism underlie specificity in noncovalent interactions with ubiquitin
    • T. Wlodarski, and B. Zagrovic Conformational selection and induced fit mechanism underlie specificity in noncovalent interactions with ubiquitin Proc. Natl. Acad. Sci. U. S. A. 106 2009 19346 19351
    • (2009) Proc. Natl. Acad. Sci. U. S. A. , vol.106 , pp. 19346-19351
    • Wlodarski, T.1    Zagrovic, B.2
  • 14
  • 15
    • 84873351927 scopus 로고    scopus 로고
    • Dissecting the hydrophobic effect on the molecular level: The role of water, enthalpy, and entropy in ligand binding to thermolysin
    • A. Biela, N.N. Nasief, M. Betz, A. Heine, D. Hangauer, and G. Klebe Dissecting the hydrophobic effect on the molecular level: The role of water, enthalpy, and entropy in ligand binding to thermolysin Angew. Chem. Int. Ed. 52 2013 1822 1828
    • (2013) Angew. Chem. Int. Ed. , vol.52 , pp. 1822-1828
    • Biela, A.1    Nasief, N.N.2    Betz, M.3    Heine, A.4    Hangauer, D.5    Klebe, G.6
  • 16
    • 0032054612 scopus 로고    scopus 로고
    • Theory of biomolecular recognition
    • DOI 10.1016/S0959-440X(98)80046-8
    • J.A. McCammon Theory of biomolecular recognition Curr. Opin. Struct. Biol. 8 1998 245 249 (Pubitemid 28221058)
    • (1998) Current Opinion in Structural Biology , vol.8 , Issue.2 , pp. 245-249
    • McCammon, J.A.1
  • 17
    • 0037666888 scopus 로고    scopus 로고
    • Implications of protein flexibility for drug discovery
    • S.J. Teague Implications of protein flexibility for drug discovery Nat. Rev. Drug Discov. 2 2003 527 541 (Pubitemid 37361745)
    • (2003) Nature Reviews Drug Discovery , vol.2 , Issue.7 , pp. 527-541
    • Teague, S.J.1
  • 18
    • 84871381838 scopus 로고    scopus 로고
    • Accounting for receptor flexibility and enhanced sampling methods in computer-aided drug design
    • W. Sinko, S. Lindert, and J.A. McCammon Accounting for receptor flexibility and enhanced sampling methods in computer-aided drug design Chem. Biol. Drug Des. 81 2013 41 49
    • (2013) Chem. Biol. Drug Des. , vol.81 , pp. 41-49
    • Sinko, W.1    Lindert, S.2    McCammon, J.A.3
  • 20
    • 84861219631 scopus 로고    scopus 로고
    • Allostery and the Monod-Wyman-Changeux model after 50 years
    • J.P. Changeux Allostery and the Monod-Wyman-Changeux model after 50 years Annu. Rev. Biophys. 41 2012 103 133
    • (2012) Annu. Rev. Biophys. , vol.41 , pp. 103-133
    • Changeux, J.P.1
  • 21
    • 73649152457 scopus 로고
    • Allosteric proteins and cellular control systems
    • J. Monod, J.P. Changeux, and F. Jacob Allosteric proteins and cellular control systems J. Mol. Biol. 6 1963 306 329
    • (1963) J. Mol. Biol. , vol.6 , pp. 306-329
    • Monod, J.1    Changeux, J.P.2    Jacob, F.3
  • 22
    • 79959334490 scopus 로고    scopus 로고
    • 50th anniversary of the word "allosteric"
    • J.P. Changeux 50th anniversary of the word "allosteric" Protein Sci. 20 2011 1119 1124
    • (2011) Protein Sci. , vol.20 , pp. 1119-1124
    • Changeux, J.P.1
  • 23
    • 0013863816 scopus 로고
    • Comparison of experimental binding data and theoretical models in proteins containing subunits
    • D. Koshland Jr., G. Nemethy, and D. Filmer Comparison of experimental binding data and theoretical models in proteins containing subunits Biochemistry 5 1966 365 385
    • (1966) Biochemistry , vol.5 , pp. 365-385
    • Koshland, Jr.D.1    Nemethy, G.2    Filmer, D.3
  • 24
    • 0000450916 scopus 로고
    • The oxygen equilibrium of hemoglobin and its structural interpretation
    • L. Pauling The oxygen equilibrium of hemoglobin and its structural interpretation Proc. Natl. Acad. Sci. U. S. A. 21 1935 186
    • (1935) Proc. Natl. Acad. Sci. U. S. A. , vol.21 , pp. 186
    • Pauling, L.1
  • 26
    • 0023426568 scopus 로고
    • Oxygen-organophosphate linkage in hemoglobin A. The double hump effect
    • J. Kister, C. Poyart, and S. Edelstein Oxygen-organophosphate linkage in hemoglobin A. The double hump effect Biophys. J. 52 1987 527 535
    • (1987) Biophys. J. , vol.52 , pp. 527-535
    • Kister, J.1    Poyart, C.2    Edelstein, S.3
  • 27
    • 0021658956 scopus 로고
    • Allostery without conformational change
    • A. Cooper, and D. Dryden Allostery without conformational change Eur. Biophys. J. 11 1984 103 109
    • (1984) Eur. Biophys. J. , vol.11 , pp. 103-109
    • Cooper, A.1    Dryden, D.2
  • 28
    • 84863697908 scopus 로고    scopus 로고
    • Structural and entropic allosteric signal transduction strength via correlated motions
    • D. Long, and R. Brüschweiler Structural and entropic allosteric signal transduction strength via correlated motions J. Phys. Chem. Lett. 3 2012 1722 1726
    • (2012) J. Phys. Chem. Lett. , vol.3 , pp. 1722-1726
    • Long, D.1    Brüschweiler, R.2
  • 30
    • 58149193205 scopus 로고    scopus 로고
    • Allosteric modulators of GPCRs: A novel approach for the treatment of CNS disorders
    • P.J. Conn, A. Christopoulos, and C.W. Lindsley Allosteric modulators of GPCRs: a novel approach for the treatment of CNS disorders Nat. Rev. Drug Discov. 8 2009 41 54
    • (2009) Nat. Rev. Drug Discov. , vol.8 , pp. 41-54
    • Conn, P.J.1    Christopoulos, A.2    Lindsley, C.W.3
  • 34
    • 84876266689 scopus 로고    scopus 로고
    • Allostery in disease and in drug discovery
    • R. Nussinov, and C.-J. Tsai Allostery in disease and in drug discovery Cell 153 2013 293 305
    • (2013) Cell , vol.153 , pp. 293-305
    • Nussinov, R.1    Tsai, C.-J.2
  • 35
    • 84876709135 scopus 로고    scopus 로고
    • Allo-network drugs: Extension of the allosteric drug concept to protein-protein interaction and signaling networks
    • A. Szilágyi, R. Nussinov, and P. Csermely Allo-network drugs: extension of the allosteric drug concept to protein-protein interaction and signaling networks Curr. Top. Med. Chem. 13 2013 64 77
    • (2013) Curr. Top. Med. Chem. , vol.13 , pp. 64-77
    • Szilágyi, A.1    Nussinov, R.2    Csermely, P.3
  • 36
    • 78650147139 scopus 로고    scopus 로고
    • Allostery at G protein-coupled receptor homo-and heteromers: Uncharted pharmacological landscapes
    • N.J. Smith, and G. Milligan Allostery at G protein-coupled receptor homo-and heteromers: uncharted pharmacological landscapes Pharmacol. Rev. 62 2010 701 725
    • (2010) Pharmacol. Rev. , vol.62 , pp. 701-725
    • Smith, N.J.1    Milligan, G.2
  • 38
    • 33645834303 scopus 로고    scopus 로고
    • New tools provide new insights in NMR studies of protein dynamics
    • A. Mittermaier, and L.E. Kay New tools provide new insights in NMR studies of protein dynamics Science 312 2006 224 228
    • (2006) Science , vol.312 , pp. 224-228
    • Mittermaier, A.1    Kay, L.E.2
  • 40
    • 0036680063 scopus 로고    scopus 로고
    • Protein flexibility and drug design: How to hit a moving target
    • DOI 10.1016/S1367-5931(02)00341-1
    • H.A. Carlson Protein flexibility and drug design: how to hit a moving target Curr. Opin. Chem. Biol. 6 2002 447 452 (Pubitemid 34804766)
    • (2002) Current Opinion in Chemical Biology , vol.6 , Issue.4 , pp. 447-452
    • Carlson, H.A.1
  • 41
    • 84874896486 scopus 로고    scopus 로고
    • Rational prediction with molecular dynamics for hit identification
    • S.E. Nichols, R.V. Swift, and R.E. Amaro Rational prediction with molecular dynamics for hit identification Curr. Top. Med. Chem. 12 2012 2002 2012
    • (2012) Curr. Top. Med. Chem. , vol.12 , pp. 2002-2012
    • Nichols, S.E.1    Swift, R.V.2    Amaro, R.E.3
  • 42
    • 4344707281 scopus 로고    scopus 로고
    • Unfolded proteins and protein folding studied by NMR
    • H.J. Dyson, and P.E. Wright Unfolded proteins and protein folding studied by NMR Chem. Rev. 104 2004 3607 3622
    • (2004) Chem. Rev. , vol.104 , pp. 3607-3622
    • Dyson, H.J.1    Wright, P.E.2
  • 43
    • 82455179494 scopus 로고    scopus 로고
    • Understanding biomolecular motion, recognition, and allostery by use of conformational ensembles
    • R.B. Fenwick, S. Esteban-Martín, and X. Salvatella Understanding biomolecular motion, recognition, and allostery by use of conformational ensembles Eur. Biophys. J. 40 2011 1339 1355
    • (2011) Eur. Biophys. J. , vol.40 , pp. 1339-1355
    • Fenwick, R.B.1    Esteban-Martín, S.2    Salvatella, X.3
  • 47
    • 1642357706 scopus 로고    scopus 로고
    • The Many Roles of Computation in Drug Discovery
    • DOI 10.1126/science.1096361
    • W.L. Jorgensen The many roles of computation in drug discovery Science 303 2004 1813 1818 (Pubitemid 38374866)
    • (2004) Science , vol.303 , Issue.5665 , pp. 1813-1818
    • Jorgensen, W.L.1
  • 50
    • 79960007037 scopus 로고    scopus 로고
    • Complete reconstruction of an enzyme-inhibitor binding process by molecular dynamics simulations
    • I. Buch, T. Giorgino, and G. De Fabritiis Complete reconstruction of an enzyme-inhibitor binding process by molecular dynamics simulations Proc. Natl. Acad. Sci. U. S. A. 108 2011 10184 10189
    • (2011) Proc. Natl. Acad. Sci. U. S. A. , vol.108 , pp. 10184-10189
    • Buch, I.1    Giorgino, T.2    De Fabritiis, G.3
  • 52
    • 79953109635 scopus 로고    scopus 로고
    • Advances in all atom sampling methods for modeling protein-ligand binding affinities
    • E. Gallicchio, and R.M. Levy Advances in all atom sampling methods for modeling protein-ligand binding affinities Curr. Opin. Struct. Biol. 21 2011 161 166
    • (2011) Curr. Opin. Struct. Biol. , vol.21 , pp. 161-166
    • Gallicchio, E.1    Levy, R.M.2
  • 55
    • 34247500337 scopus 로고    scopus 로고
    • Exploring multiple timescale motions in protein GB3 using accelerated molecular dynamics and NMR spectroscopy
    • DOI 10.1021/ja0687668
    • P.R. Markwick, G. Bouvignies, and M. Blackledge Exploring multiple timescale motions in protein GB3 using accelerated molecular dynamics and NMR spectroscopy J. Am. Chem. Soc. 129 2007 4724 4730 (Pubitemid 46648771)
    • (2007) Journal of the American Chemical Society , vol.129 , Issue.15 , pp. 4724-4730
    • Markwick, P.R.L.1    Bouvignies, G.2    Blackledge, M.3
  • 56
    • 11144323163 scopus 로고    scopus 로고
    • Virtual screening of chemical libraries
    • DOI 10.1038/nature03197
    • B.K. Shoichet Virtual screening of chemical libraries Nature 432 2004 862 865 (Pubitemid 40037142)
    • (2004) Nature , vol.432 , Issue.7019 , pp. 862-865
    • Shoichet, B.K.1
  • 57
    • 35348821202 scopus 로고    scopus 로고
    • Virtual screening strategies in drug discovery
    • DOI 10.1016/j.cbpa.2007.08.033, PII S1367593107001172
    • C. McInnes Virtual screening strategies in drug discovery Curr. Opin. Chem. Biol. 11 2007 494 502 (Pubitemid 47589008)
    • (2007) Current Opinion in Chemical Biology , vol.11 , Issue.5 , pp. 494-502
    • McInnes, C.1
  • 58
    • 8844263008 scopus 로고    scopus 로고
    • Docking and scoring in virtual screening for drug discovery: Methods and applications
    • DOI 10.1038/nrd1549
    • D.B. Kitchen, H. Decornez, J.R. Furr, and J. Bajorath Docking and scoring in virtual screening for drug discovery: methods and applications Nat. Rev. Drug Discov. 3 2004 935 949 (Pubitemid 39529931)
    • (2004) Nature Reviews Drug Discovery , vol.3 , Issue.11 , pp. 935-949
    • Kitchen, D.B.1    Decornez, H.2    Furr, J.R.3    Bajorath, J.4
  • 60
    • 77952390528 scopus 로고    scopus 로고
    • Basic ingredients of free energy calculations: A review
    • C.D. Christ, A.E. Mark, and W.F. van Gunsteren Basic ingredients of free energy calculations: a review J. Comput. Chem. 31 2010 1569 1582
    • (2010) J. Comput. Chem. , vol.31 , pp. 1569-1582
    • Christ, C.D.1    Mark, A.E.2    Van Gunsteren, W.F.3
  • 61
    • 67649225348 scopus 로고    scopus 로고
    • Efficient drug lead discovery and optimization
    • W.L. Jorgensen Efficient drug lead discovery and optimization Acc. Chem. Res. 42 2009 724 733
    • (2009) Acc. Chem. Res. , vol.42 , pp. 724-733
    • Jorgensen, W.L.1
  • 63
    • 84871960256 scopus 로고    scopus 로고
    • Perspective: Alchemical free energy calculations for drug discovery
    • D.L. Mobley, and P.V. Klimovich Perspective: alchemical free energy calculations for drug discovery J. Chem. Phys. 137 2012 230901
    • (2012) J. Chem. Phys. , vol.137 , pp. 230901
    • Mobley, D.L.1    Klimovich, P.V.2
  • 64
    • 84872859789 scopus 로고    scopus 로고
    • Molecular recognition and ligand association
    • R. Baron, and J.A. McCammon Molecular recognition and ligand association Annu. Rev. Phys. Chem. 64 2013 151 175
    • (2013) Annu. Rev. Phys. Chem. , vol.64 , pp. 151-175
    • Baron, R.1    McCammon, J.A.2
  • 65
    • 84857537331 scopus 로고    scopus 로고
    • Statistical mechanics and molecular dynamics in evaluating thermodynamic properties of biomolecular recognition
    • J. Wereszczynski, and J.A. McCammon Statistical mechanics and molecular dynamics in evaluating thermodynamic properties of biomolecular recognition Q. Rev. Biophys. 45 2012 1 25
    • (2012) Q. Rev. Biophys. , vol.45 , pp. 1-25
    • Wereszczynski, J.1    McCammon, J.A.2
  • 66
    • 77949351042 scopus 로고    scopus 로고
    • Emerging methods for ensemble-based virtual screening
    • R.E. Amaro, and W.W. Li Emerging methods for ensemble-based virtual screening Curr. Top. Med. Chem. 10 2010 3
    • (2010) Curr. Top. Med. Chem. , vol.10 , pp. 3
    • Amaro, R.E.1    Li, W.W.2
  • 67
    • 0031581852 scopus 로고    scopus 로고
    • Molecular docking to ensembles of protein structures
    • DOI 10.1006/jmbi.1996.0776
    • R. Knegtel, I.D. Kuntz, and C. Oshiro Molecular docking to ensembles of protein structures J. Mol. Biol. 266 1997 424 440 (Pubitemid 27171024)
    • (1997) Journal of Molecular Biology , vol.266 , Issue.2 , pp. 424-440
    • Knegtel, R.M.A.1    Kuntz, I.D.2    Oshiro, C.M.3
  • 68
    • 21244479779 scopus 로고    scopus 로고
    • Unveiling the full potential of flexible receptor docking using multiple crystallographic structures
    • DOI 10.1021/jm048972v
    • X. Barril, and S.D. Morley Unveiling the full potential of flexible receptor docking using multiple crystallographic structures J. Med. Chem. 48 2005 4432 4443 (Pubitemid 40884945)
    • (2005) Journal of Medicinal Chemistry , vol.48 , Issue.13 , pp. 4432-4443
    • Barril, X.1    Morley, S.D.2
  • 69
    • 41949132916 scopus 로고    scopus 로고
    • Flexible ligand docking to multiple receptor conformations: A practical alternative
    • M. Totrov, and R. Abagyan Flexible ligand docking to multiple receptor conformations: a practical alternative Curr. Opin. Chem. Biol. 18 2008 178 184
    • (2008) Curr. Opin. Chem. Biol. , vol.18 , pp. 178-184
    • Totrov, M.1    Abagyan, R.2
  • 73
    • 77956975241 scopus 로고    scopus 로고
    • Targeting isoprenoid biosynthesis for drug discovery: Bench to bedside
    • E. Oldfield Targeting isoprenoid biosynthesis for drug discovery: bench to bedside Acc. Chem. Res. 43 2010 1216 1226
    • (2010) Acc. Chem. Res. , vol.43 , pp. 1216-1226
    • Oldfield, E.1
  • 74
    • 84856158159 scopus 로고    scopus 로고
    • Terpene biosynthesis: Modularity rules
    • E. Oldfield, and F.-Y. Lin Terpene biosynthesis: modularity rules Angew. Chem. Int. Ed. 51 2012 1124 1137
    • (2012) Angew. Chem. Int. Ed. , vol.51 , pp. 1124-1137
    • Oldfield, E.1    Lin, F.-Y.2
  • 76
    • 80054950510 scopus 로고    scopus 로고
    • Molecular dynamics simulations and drug discovery
    • J. Durrant, and J.A. McCammon Molecular dynamics simulations and drug discovery BMC Biol. 9 2011 71
    • (2011) BMC Biol. , vol.9 , pp. 71
    • Durrant, J.1    McCammon, J.A.2
  • 78
    • 0036725277 scopus 로고    scopus 로고
    • Molecular dynamics simulations of biomolecules
    • DOI 10.1038/nsb0902-646
    • M. Karplus, and J.A. McCammon Molecular dynamics simulations of biomolecules Nat. Struct. Mol. Biol. 9 2002 646 652 (Pubitemid 34977295)
    • (2002) Nature Structural Biology , vol.9 , Issue.9 , pp. 646-652
    • Karplus, M.1    McCammon, J.A.2
  • 79
    • 33646943202 scopus 로고    scopus 로고
    • Molecular dynamics: Survey of methods for simulating the activity of proteins
    • DOI 10.1021/cr040426m
    • S.A. Adcock, and J.A. McCammon Molecular dynamics: survey of methods for simulating the activity of proteins Chem. Rev. 106 2006 1589 1615 (Pubitemid 43792773)
    • (2006) Chemical Reviews , vol.106 , Issue.5 , pp. 1589-1615
    • Adcock, S.A.1    McCammon, J.A.2
  • 83
    • 17044422037 scopus 로고    scopus 로고
    • Biomolecular simulations at constant pH
    • J. Mongan, and D.A. Case Biomolecular simulations at constant pH Curr. Opin. Struct. Biol. 15 2005 157 163
    • (2005) Curr. Opin. Struct. Biol. , vol.15 , pp. 157-163
    • Mongan, J.1    Case, D.A.2
  • 84
    • 81055156171 scopus 로고    scopus 로고
    • Measuring the successes and deficiencies of constant pH molecular dynamics: A blind prediction study
    • S.L. Williams, P.G. Blachly, and J.A. McCammon Measuring the successes and deficiencies of constant pH molecular dynamics: a blind prediction study Proteins Struct. Funct. Bioinform. 79 2011 3381 3388
    • (2011) Proteins Struct. Funct. Bioinform. , vol.79 , pp. 3381-3388
    • Williams, S.L.1    Blachly, P.G.2    McCammon, J.A.3
  • 85
    • 79955967681 scopus 로고    scopus 로고
    • Applying molecular dynamics simulations to identify rarely sampled ligand-bound conformational states of undecaprenyl pyrophosphate synthase, an antibacterial target
    • W. Sinko, C.A.F. de Oliveira, S. Williams, A. Van Wynsberghe, J.D. Durrant, R. Cao, E. Oldfield, and J.A. McCammon Applying molecular dynamics simulations to identify rarely sampled ligand-bound conformational states of undecaprenyl pyrophosphate synthase, an antibacterial target Chem. Biol. Drug Des. 77 2011 412 420
    • (2011) Chem. Biol. Drug Des. , vol.77 , pp. 412-420
    • Sinko, W.1    De Oliveira, C.A.F.2    Williams, S.3    Van Wynsberghe, A.4    Durrant, J.D.5    Cao, R.6    Oldfield, E.7    McCammon, J.A.8
  • 86
    • 79959758718 scopus 로고    scopus 로고
    • Predictive power of molecular dynamics receptor structures in virtual screening
    • S.E. Nichols, R. Baron, A. Ivetac, and J.A. McCammon Predictive power of molecular dynamics receptor structures in virtual screening J. Chem. Inf. Model. 51 2011 1439 1446
    • (2011) J. Chem. Inf. Model. , vol.51 , pp. 1439-1446
    • Nichols, S.E.1    Baron, R.2    Ivetac, A.3    McCammon, J.A.4
  • 87
    • 0037157153 scopus 로고    scopus 로고
    • Computational drug design accommodating receptor flexibility: The relaxed complex scheme
    • DOI 10.1021/ja0260162
    • J.-H. Lin, A.L. Perryman, J.R. Schames, and J.A. McCammon Computational drug design accommodating receptor flexibility: the relaxed complex scheme J. Am. Chem. Soc. 124 2002 5632 5633 (Pubitemid 34533490)
    • (2002) Journal of the American Chemical Society , vol.124 , Issue.20 , pp. 5632-5633
    • Lin, J.-H.1    Perryman, A.L.2    Schames, J.R.3    McCammon, J.A.4
  • 88
    • 50249114683 scopus 로고    scopus 로고
    • An improved relaxed complex scheme for receptor flexibility in computer-aided drug design
    • R.E. Amaro, R. Baron, and J.A. McCammon An improved relaxed complex scheme for receptor flexibility in computer-aided drug design J. Comput. Aided Mol. Des. 22 2008 693 705
    • (2008) J. Comput. Aided Mol. Des. , vol.22 , pp. 693-705
    • Amaro, R.E.1    Baron, R.2    McCammon, J.A.3
  • 92
    • 84862282513 scopus 로고    scopus 로고
    • Exploring protein flexibility: Incorporating structural ensembles from crystal structures and simulation into virtual screening protocols
    • D.J. Osguthorpe, W. Sherman, and A.T. Hagler Exploring protein flexibility: incorporating structural ensembles from crystal structures and simulation into virtual screening protocols J. Phys. Chem. B 116 2012 6952 6959
    • (2012) J. Phys. Chem. B , vol.116 , pp. 6952-6959
    • Osguthorpe, D.J.1    Sherman, W.2    Hagler, A.T.3
  • 93
    • 34247098754 scopus 로고    scopus 로고
    • Multiscale modeling of biomolecular systems: in serial and in parallel
    • DOI 10.1016/j.sbi.2007.03.004, PII S0959440X07000346, Theory and Simulation / Mecromolecular Assemblages
    • G.S. Ayton, W.G. Noid, and G.A. Voth Multiscale modeling of biomolecular systems: in serial and in parallel Curr. Opin. Struct. Biol. 17 2007 192 198 (Pubitemid 46584804)
    • (2007) Current Opinion in Structural Biology , vol.17 , Issue.2 , pp. 192-198
    • Ayton, G.S.1    Noid, W.G.2    Voth, G.A.3
  • 94
    • 0001616080 scopus 로고    scopus 로고
    • Replica-exchange molecular dynamics method for protein folding
    • PII S0009261499011239
    • Y. Sugita, and Y. Okamoto Replica-exchange molecular dynamics method for protein folding Chem. Phys. Lett. 314 1999 141 151 (Pubitemid 129556751)
    • (1999) Chemical Physics Letters , vol.314 , Issue.1-2 , pp. 141-151
    • Sugita, Y.1    Okamoto, Y.2
  • 95
    • 16444385400 scopus 로고
    • Monte Carlo free energy estimates using non-Boltzmann sampling: Application to the sub-critical Lennard-Jones fluid
    • G.M. Torrie, and J.P. Valleau Monte Carlo free energy estimates using non-Boltzmann sampling: application to the sub-critical Lennard-Jones fluid Chem. Phys. Lett. 28 1974 578 581
    • (1974) Chem. Phys. Lett. , vol.28 , pp. 578-581
    • Torrie, G.M.1    Valleau, J.P.2
  • 96
    • 0342929614 scopus 로고
    • Nonphysical sampling distributions in Monte Carlo free-energy estimation: Umbrella sampling
    • G.M. Torrie, and J.P. Valleau Nonphysical sampling distributions in Monte Carlo free-energy estimation: umbrella sampling J. Comput. Phys. 23 1977 187 199
    • (1977) J. Comput. Phys. , vol.23 , pp. 187-199
    • Torrie, G.M.1    Valleau, J.P.2
  • 97
    • 0001060458 scopus 로고
    • A Monte Carlo method for obtaining the interionic potential of mean force in ionic solution
    • G. Patey, and J. Valleau A Monte Carlo method for obtaining the interionic potential of mean force in ionic solution J. Chem. Phys. 63 1975 2334
    • (1975) J. Chem. Phys. , vol.63 , pp. 2334
    • Patey, G.1    Valleau, J.2
  • 100
    • 3142716857 scopus 로고    scopus 로고
    • Accelerated molecular dynamics: A promising and efficient simulation method for biomolecules
    • D. Hamelberg, J. Mongan, and J.A. McCammon Accelerated molecular dynamics: a promising and efficient simulation method for biomolecules J. Chem. Phys. 120 2004 11919
    • (2004) J. Chem. Phys. , vol.120 , pp. 11919
    • Hamelberg, D.1    Mongan, J.2    McCammon, J.A.3
  • 101
    • 81255138340 scopus 로고    scopus 로고
    • Studying functional dynamics in bio-molecules using accelerated molecular dynamics
    • P.R. Markwick, and J.A. McCammon Studying functional dynamics in bio-molecules using accelerated molecular dynamics Phys. Chem. Chem. Phys. 13 2011 20053 20065
    • (2011) Phys. Chem. Chem. Phys. , vol.13 , pp. 20053-20065
    • Markwick, P.R.1    McCammon, J.A.2
  • 104
    • 47849086387 scopus 로고    scopus 로고
    • A statistical analysis of the precision of reweighting-based simulations
    • T. Shen, and D. Hamelberg A statistical analysis of the precision of reweighting-based simulations J. Chem. Phys. 129 2008 034103
    • (2008) J. Chem. Phys. , vol.129 , pp. 034103
    • Shen, T.1    Hamelberg, D.2
  • 105
    • 78149458812 scopus 로고    scopus 로고
    • Using selectively applied accelerated molecular dynamics to enhance free energy calculations
    • J. Wereszczynski, and J.A. McCammon Using selectively applied accelerated molecular dynamics to enhance free energy calculations J. Chem. Theory Comput. 6 2010 3285 3292
    • (2010) J. Chem. Theory Comput. , vol.6 , pp. 3285-3292
    • Wereszczynski, J.1    McCammon, J.A.2
  • 108
    • 84894275916 scopus 로고    scopus 로고
    • Enhanced conformational sampling of M2 muscarinic acetylcholine receptor for designing selective allosteric drugs
    • Y. Miao, and J.A. McCammon Enhanced conformational sampling of M2 muscarinic acetylcholine receptor for designing selective allosteric drugs Biophys. J. 104 2013 26
    • (2013) Biophys. J. , vol.104 , pp. 26
    • Miao, Y.1    McCammon, J.A.2
  • 109
    • 84861210523 scopus 로고    scopus 로고
    • Nucleotide-dependent mechanism of Get3 as elucidated from free energy calculations
    • J. Wereszczynski, and J.A. McCammon Nucleotide-dependent mechanism of Get3 as elucidated from free energy calculations Proc. Natl. Acad. Sci. U. S. A. 109 2012 7759 7764
    • (2012) Proc. Natl. Acad. Sci. U. S. A. , vol.109 , pp. 7759-7764
    • Wereszczynski, J.1    McCammon, J.A.2
  • 111
    • 0023140044 scopus 로고
    • Multiple conformational states of proteins: A molecular dynamics analysis of myoglobin
    • R. Elber, and M. Karplus Multiple conformational states of proteins: a molecular dynamics analysis of myoglobin Science 235 1987 318 321 (Pubitemid 17232557)
    • (1987) Science , vol.235 , Issue.4786 , pp. 318-321
    • Elber, R.1    Karplus, M.2
  • 112
    • 0000998079 scopus 로고
    • The effects of solvent on the conformation and the collective motions of protein: Normal mode analysis and molecular dynamics simulations of melittin in water and in vacuum
    • A. Kitao, F. Hirata, and N. Gö The effects of solvent on the conformation and the collective motions of protein: normal mode analysis and molecular dynamics simulations of melittin in water and in vacuum Chem. Phys. 158 1991 447 472
    • (1991) Chem. Phys. , vol.158 , pp. 447-472
    • Kitao, A.1    Hirata, F.2    Gö, N.3
  • 113
    • 0000577041 scopus 로고
    • Large-amplitude nonlinear motions in proteins
    • A.E. Garcia Large-amplitude nonlinear motions in proteins Phys. Rev. Lett. 68 1992 2696
    • (1992) Phys. Rev. Lett. , vol.68 , pp. 2696
    • Garcia, A.E.1
  • 115
    • 0034127361 scopus 로고    scopus 로고
    • Collective protein dynamics in relation to function
    • DOI 10.1016/S0959-440X(00)00061-0
    • H.J. Berendsen, and S. Hayward Collective protein dynamics in relation to function Curr. Opin. Chem. Biol. 10 2000 165 169 (Pubitemid 30198942)
    • (2000) Current Opinion in Structural Biology , vol.10 , Issue.2 , pp. 165-169
    • Berendsen, H.J.1    Hayward, S.2
  • 117
    • 78649801418 scopus 로고    scopus 로고
    • Conformational selection in G-proteins: Lessons from Ras and Rho
    • B.J. Grant, J.A. McCammon, and A.A. Gorfe Conformational selection in G-proteins: lessons from Ras and Rho Biophys. J. 99 2010 L87 L89
    • (2010) Biophys. J. , vol.99
    • Grant, B.J.1    McCammon, J.A.2    Gorfe, A.A.3
  • 118
    • 75749093371 scopus 로고    scopus 로고
    • Recipes for the selection of experimental protein conformations for virtual screening
    • M. Rueda, G. Bottegoni, and R. Abagyan Recipes for the selection of experimental protein conformations for virtual screening J. Chem. Inf. Model. 50 2009 186 193
    • (2009) J. Chem. Inf. Model. , vol.50 , pp. 186-193
    • Rueda, M.1    Bottegoni, G.2    Abagyan, R.3
  • 120
    • 77954343124 scopus 로고    scopus 로고
    • Computer-aided identification of Trypanosoma brucei uridine diphosphate galactose 4â€šÄ ≤-epimerase inhibitors: Toward the development of novel therapies for African sleeping sickness
    • J.D. Durrant, M.D. Urbaniak, M.A. Ferguson, and J.A. McCammon Computer-aided identification of Trypanosoma brucei uridine diphosphate galactose 4â€šÄ ≤-epimerase inhibitors: toward the development of novel therapies for African sleeping sickness J. Med. Chem. 53 2010 5025 5032
    • (2010) J. Med. Chem. , vol.53 , pp. 5025-5032
    • Durrant, J.D.1    Urbaniak, M.D.2    Ferguson, M.A.3    McCammon, J.A.4
  • 121
    • 76149120388 scopus 로고    scopus 로고
    • AutoDock Vina: Improving the speed and accuracy of docking with a new scoring function, efficient optimization, and multithreading
    • O. Trott, and A.J. Olson AutoDock Vina: improving the speed and accuracy of docking with a new scoring function, efficient optimization, and multithreading J. Comput. Chem. 31 2010 455 461
    • (2010) J. Comput. Chem. , vol.31 , pp. 455-461
    • Trott, O.1    Olson, A.J.2
  • 125
    • 84860838201 scopus 로고    scopus 로고
    • Structure-based computational analysis of protein binding sites for function and druggability prediction
    • B. Nisius, F. Sha, and H. Gohlke Structure-based computational analysis of protein binding sites for function and druggability prediction J. Biotechnol. 159 2012 123 134
    • (2012) J. Biotechnol. , vol.159 , pp. 123-134
    • Nisius, B.1    Sha, F.2    Gohlke, H.3
  • 126
    • 84863243858 scopus 로고    scopus 로고
    • Computational prediction of protein hot spot residues
    • J. Kenneth Morrow, and S. Zhang Computational prediction of protein hot spot residues Curr. Pharm. Des. 18 2012 1255 1265
    • (2012) Curr. Pharm. Des. , vol.18 , pp. 1255-1265
    • Kenneth Morrow, J.1    Zhang, S.2
  • 127
    • 0036490942 scopus 로고    scopus 로고
    • Allosteric binding sites on cell-surface receptors: Novel targets for drug discovery
    • A. Christopoulos Allosteric binding sites on cell-surface receptors: novel targets for drug discovery Nat. Rev. Drug Discov. 1 2002 198 210 (Pubitemid 37361423)
    • (2002) Nature Reviews Drug Discovery , vol.1 , Issue.3 , pp. 198-210
    • Christopoulos, A.1
  • 128
    • 77955249382 scopus 로고    scopus 로고
    • Mapping the druggable allosteric space of G-protein coupled receptors: A fragment-based molecular dynamics approach
    • A. Ivetac, and J.A. McCammon Mapping the druggable allosteric space of G-protein coupled receptors: a fragment-based molecular dynamics approach Chem. Biol. Drug Des. 76 2010 201 217
    • (2010) Chem. Biol. Drug Des. , vol.76 , pp. 201-217
    • Ivetac, A.1    McCammon, J.A.2
  • 129
    • 61449104961 scopus 로고    scopus 로고
    • Fragment-based identification of druggable 'hot spots' of proteins using Fourier domain correlation techniques
    • R. Brenke, D. Kozakov, G.-Y. Chuang, D. Beglov, D. Hall, M.R. Landon, C. Mattos, and S. Vajda Fragment-based identification of druggable 'hot spots' of proteins using Fourier domain correlation techniques Bioinformatics 25 2009 621 627
    • (2009) Bioinformatics , vol.25 , pp. 621-627
    • Brenke, R.1    Kozakov, D.2    Chuang, G.-Y.3    Beglov, D.4    Hall, D.5    Landon, M.R.6    Mattos, C.7    Vajda, S.8
  • 130
    • 33745199815 scopus 로고    scopus 로고
    • Virtual ligand screening: Strategies, perspectives and limitations
    • G. Klebe Virtual ligand screening: strategies, perspectives and limitations Drug Discov. Today 11 2006 580 594
    • (2006) Drug Discov. Today , vol.11 , pp. 580-594
    • Klebe, G.1
  • 133
    • 63149162777 scopus 로고    scopus 로고
    • Managing protein flexibility in docking and its applications
    • C. B-Rao, J. Subramanian, and S.D. Sharma Managing protein flexibility in docking and its applications Drug Discov. Today 14 2009 394 400
    • (2009) Drug Discov. Today , vol.14 , pp. 394-400
    • B-Rao, C.1    Subramanian, J.2    Sharma, S.D.3
  • 134
    • 84865237493 scopus 로고    scopus 로고
    • Protein flexibility in docking and surface mapping
    • K.W. Lexa, and H.A. Carlson Protein flexibility in docking and surface mapping Q. Rev. Biophys. 45 2012 301 343
    • (2012) Q. Rev. Biophys. , vol.45 , pp. 301-343
    • Lexa, K.W.1    Carlson, H.A.2
  • 135
    • 80054807339 scopus 로고    scopus 로고
    • Receptor flexibility in small-molecule docking calculations
    • D.B. Kokh, R.C. Wade, and W. Wenzel Receptor flexibility in small-molecule docking calculations WIREs Comput. Mol. Sci. 1 2011 298 314
    • (2011) WIREs Comput. Mol. Sci. , vol.1 , pp. 298-314
    • Kokh, D.B.1    Wade, R.C.2    Wenzel, W.3
  • 136
    • 0026310932 scopus 로고
    • "Soft docking": Matching of molecular surface cubes
    • F. Jiang, and S.-H. Kim "Soft docking": matching of molecular surface cubes J. Mol. Biol. 219 1991 79 102 (Pubitemid 121003975)
    • (1991) Journal of Molecular Biology , vol.219 , Issue.1 , pp. 79-102
    • Jiang, F.1    Kim, S.-H.2
  • 137
    • 4744365803 scopus 로고    scopus 로고
    • Soft docking and multiple receptor conformations in virtual screening
    • DOI 10.1021/jm049756p
    • A.M. Ferrari, B.Q. Wei, L. Costantino, and B.K. Shoichet Soft docking and multiple receptor conformations in virtual screening J. Med. Chem. 47 2004 5076 5084 (Pubitemid 39314905)
    • (2004) Journal of Medicinal Chemistry , vol.47 , Issue.21 , pp. 5076-5084
    • Ferrari, A.M.1    Wei, B.Q.2    Costantino, L.3    Shoichet, B.K.4
  • 138
    • 0028158936 scopus 로고
    • Ligand docking to proteins with discrete side-chain flexibility
    • A.R. Leach Ligand docking to proteins with discrete side-chain flexibility J. Mol. Biol. 235 1994 345 356 (Pubitemid 24049519)
    • (1994) Journal of Molecular Biology , vol.235 , Issue.1 , pp. 345-356
    • Leach, A.R.1
  • 139
    • 33745088619 scopus 로고    scopus 로고
    • Use of an induced fit receptor structure in virtual screening
    • DOI 10.1111/j.1747-0285.2005.00327.x
    • W. Sherman, H.S. Beard, and R. Farid Use of an induced fit receptor structure in virtual screening Chem. Biol. Drug Des. 67 2006 83 84 (Pubitemid 43881391)
    • (2006) Chemical Biology and Drug Design , vol.67 , Issue.1 , pp. 83-84
    • Sherman, W.1    Beard, H.S.2    Farid, R.3
  • 141
    • 33750056673 scopus 로고    scopus 로고
    • ROSETTALIGAND: Protein-small molecule docking with full side-chain flexibility
    • DOI 10.1002/prot.21086
    • J. Meiler, and D. Baker ROSETTALIGAND: protein-small molecule docking with full side-chain flexibility Proteins Struct. Funct. Bioinform. 65 2006 538 548 (Pubitemid 44583205)
    • (2006) Proteins: Structure, Function and Genetics , vol.65 , Issue.3 , pp. 538-548
    • Meiler, J.1    Baker, D.2
  • 142
    • 58149094776 scopus 로고    scopus 로고
    • RosettaLigand docking with full ligand and receptor flexibility
    • I.W. Davis, and D. Baker RosettaLigand docking with full ligand and receptor flexibility J. Mol. Biol. 385 2009 381 392
    • (2009) J. Mol. Biol. , vol.385 , pp. 381-392
    • Davis, I.W.1    Baker, D.2
  • 143
    • 0043245780 scopus 로고    scopus 로고
    • Insights into protein-protein binding by binding free energy calculation and free energy decomposition for the Ras-Raf and Ras-RalGDS complexes
    • H. Gohlke, C. Kiel, and D.A. Case Insights into protein-protein binding by binding free energy calculation and free energy decomposition for the Ras-Raf and Ras-RalGDS complexes J. Mol. Biol. 330 2003 891 913
    • (2003) J. Mol. Biol. , vol.330 , pp. 891-913
    • Gohlke, H.1    Kiel, C.2    Case, D.A.3
  • 144
    • 0034084991 scopus 로고    scopus 로고
    • Combined molecular mechanical and continuum solvent approach (MM- PBSA/GBSA) to predict ligand binding
    • DOI 10.1023/A:1008763014207
    • I. Massova, and P.A. Kollman Combined molecular mechanical and continuum solvent approach (MM-PBSA/GBSA) to predict ligand binding Perspect. Drug Discov. Des. 18 2000 113 135 (Pubitemid 30191024)
    • (2000) Perspectives in Drug Discovery and Design , vol.18 , pp. 113-135
    • Massova, I.1    Kollman, P.A.2
  • 145
    • 58149327312 scopus 로고    scopus 로고
    • An improved method to predict the entropy term with the MM/PBSA approach
    • J. Kongsted, and U. Ryde An improved method to predict the entropy term with the MM/PBSA approach J. Comput. Aided Mol. Des. 23 2009 63 71
    • (2009) J. Comput. Aided Mol. Des. , vol.23 , pp. 63-71
    • Kongsted, J.1    Ryde, U.2
  • 146
    • 0347602124 scopus 로고    scopus 로고
    • Converging free energy estimates: MM/PB(GB)SA studies on the protein-protein complex Ras-Raf
    • H. Gohlke, and D.A. Case Converging free energy estimates: MM/PB(GB)SA studies on the protein-protein complex Ras-Raf J. Comput. Chem. 25 2004 238 250
    • (2004) J. Comput. Chem. , vol.25 , pp. 238-250
    • Gohlke, H.1    Case, D.A.2
  • 147
    • 76249112547 scopus 로고    scopus 로고
    • Fast and accurate predictions of binding free energies using MM-PBSA and MM-GBSA
    • G. Rastelli, A.D. Rio, G. Degliesposti, and M. Sgobba Fast and accurate predictions of binding free energies using MM-PBSA and MM-GBSA J. Comput. Chem. 31 2010 797 810
    • (2010) J. Comput. Chem. , vol.31 , pp. 797-810
    • Rastelli, G.1    Rio, A.D.2    Degliesposti, G.3    Sgobba, M.4
  • 148
    • 79952588669 scopus 로고    scopus 로고
    • Assessing the performance of the MM/PBSA and MM/GBSA methods. 1. The accuracy of binding free energy calculations based on molecular dynamics simulations
    • T. Hou, J. Wang, Y. Li, and W. Wang Assessing the performance of the MM/PBSA and MM/GBSA methods. 1. The accuracy of binding free energy calculations based on molecular dynamics simulations J. Chem. Inf. Model. 51 2010 69 82
    • (2010) J. Chem. Inf. Model. , vol.51 , pp. 69-82
    • Hou, T.1    Wang, J.2    Li, Y.3    Wang, W.4
  • 149
    • 0021582448 scopus 로고
    • Ligand-receptor interactions
    • B.L. Tembe, and J.A. McCammon Ligand-receptor interactions Comput. Chem. 8 1984 281 283
    • (1984) Comput. Chem. , vol.8 , pp. 281-283
    • Tembe, B.L.1    McCammon, J.A.2
  • 151
    • 65249136476 scopus 로고    scopus 로고
    • Independent-trajectories thermodynamic-integration free-energy changes for biomolecular systems: Determinants of H5N1 avian influenza virus neuraminidase inhibition by peramivir
    • M. Lawrenz, R. Baron, and J.A. McCammon Independent-trajectories thermodynamic-integration free-energy changes for biomolecular systems: determinants of H5N1 avian influenza virus neuraminidase inhibition by peramivir J. Chem. Theory Comput. 5 2009 1106 1116
    • (2009) J. Chem. Theory Comput. , vol.5 , pp. 1106-1116
    • Lawrenz, M.1    Baron, R.2    McCammon, J.A.3
  • 152
    • 58149171889 scopus 로고    scopus 로고
    • Coupling accelerated molecular dynamics methods with thermodynamic integration simulations
    • C.A.F. de Oliveira, D. Hamelberg, and J.A. McCammon Coupling accelerated molecular dynamics methods with thermodynamic integration simulations J. Chem. Theory Comput. 4 2008 1516 1525
    • (2008) J. Chem. Theory Comput. , vol.4 , pp. 1516-1525
    • De Oliveira, C.A.F.1    Hamelberg, D.2    McCammon, J.A.3
  • 153
    • 84855715024 scopus 로고    scopus 로고
    • Protecting high energy barriers: A new equation to regulate boost energy in accelerated molecular dynamics simulations
    • W. Sinko, C.A.F. de Oliveira, L.C. Pierce, and J.A. McCammon Protecting high energy barriers: a new equation to regulate boost energy in accelerated molecular dynamics simulations J. Chem. Theory Comput. 8 2011 17 23
    • (2011) J. Chem. Theory Comput. , vol.8 , pp. 17-23
    • Sinko, W.1    De Oliveira, C.A.F.2    Pierce, L.C.3    McCammon, J.A.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.