-
3
-
-
0028304683
-
-
Van Gunsteren, W.F., Luque, F.J., Timms, D. and Torda, A.E., Annu. Rev. Biophys. Biomol. Struct., 23 (1994) 847.
-
(1994)
Annu. Rev. Biophys. Biomol. Struct.
, vol.23
, pp. 847
-
-
Van Gunsteren, W.F.1
Luque, F.J.2
Timms, D.3
Torda, A.E.4
-
4
-
-
11744256643
-
-
Tomasi, J. and Persico, M., Chem, Rev., 94 (1994) 2027.
-
(1994)
Chem, Rev.
, vol.94
, pp. 2027
-
-
Tomasi, J.1
Persico, M.2
-
9
-
-
34250928962
-
-
Born, M.Z., Phys., 1 (1920) 45.
-
(1920)
Phys.
, vol.1
, pp. 45
-
-
Born, M.Z.1
-
15
-
-
0022964504
-
-
Klapper, I., Hagstrom, R., Fine, R., Sharp, K. and Honig, B., Proteins, 1 (1986) 47.
-
(1986)
Proteins
, vol.1
, pp. 47
-
-
Klapper, I.1
Hagstrom, R.2
Fine, R.3
Sharp, K.4
Honig, B.5
-
18
-
-
33751159055
-
-
Chen, J.L., Noodelman, L., Case, D.A. and Bashford, D., J. Phys. Chem., 98 (1994) 11059.
-
(1994)
J. Phys. Chem.
, vol.98
, pp. 11059
-
-
Chen, J.L.1
Noodelman, L.2
Case, D.A.3
Bashford, D.4
-
19
-
-
0029633152
-
-
Madura, J.D., Briggs, J.M., Wade, R.C., Davis, M.E., Luty, B.A., Ilin, A., Antosiewicz, J., Gilson, M.K., Bagheri, B., Scott, L.R. and McCammon, J.A., Comput. Phys. Commun., 91 (1995) 57.
-
(1995)
Comput. Phys. Commun.
, vol.91
, pp. 57
-
-
Madura, J.D.1
Briggs, J.M.2
Wade, R.C.3
Davis, M.E.4
Luty, B.A.5
Ilin, A.6
Antosiewicz, J.7
Gilson, M.K.8
Bagheri, B.9
Scott, L.R.10
McCammon, J.A.11
-
20
-
-
32844457567
-
-
Sitkoff, D., Sharp, K.A. and Honig, B., J. Phys. Chem., 98 (1994) 1978.
-
(1994)
J. Phys. Chem.
, vol.98
, pp. 1978
-
-
Sitkoff, D.1
Sharp, K.A.2
Honig, B.3
-
21
-
-
0009581180
-
-
Weiser, J., Shenkin, P.S. and Still, W.C., J. Comput. Chem., 20 (1999) 688.
-
(1999)
J. Comput. Chem.
, vol.20
, pp. 688
-
-
Weiser, J.1
Shenkin, P.S.2
Still, W.C.3
-
23
-
-
0031052519
-
-
Wlodek, S.T., Antosiewicz, J. and McCammon. J.A., Protein Sci., 6 (1997) 373.
-
(1997)
Protein Sci.
, vol.6
, pp. 373
-
-
Wlodek, S.T.1
Antosiewicz, J.2
McCammon, J.A.3
-
25
-
-
0028222670
-
-
Holst, M., Kozack, R.E., Saied, F. and Subramaniam, S., Proteins Struct. Funct. Genet., 18 (1994) 231.
-
(1994)
Proteins Struct. Funct. Genet.
, vol.18
, pp. 231
-
-
Holst, M.1
Kozack, R.E.2
Saied, F.3
Subramaniam, S.4
-
28
-
-
0344778061
-
-
Still, W.C., Tempczyrk, A., Hawley, R.C. and Hendrickson. T., J. Am. Chem. Soc., 112 (1990) 6127.
-
(1990)
J. Am. Chem. Soc.
, vol.112
, pp. 6127
-
-
Still, W.C.1
Tempczyrk, A.2
Hawley, R.C.3
Hendrickson, T.4
-
30
-
-
0000230161
-
-
Zhu, T.H., Li, J.B., Liotard, D.A., Cramer, C.J. and Truhlar, D.G., J. Chem. Phys., 110 (1999) 5503.
-
(1999)
J. Chem. Phys.
, vol.110
, pp. 5503
-
-
Zhu, T.H.1
Li, J.B.2
Liotard, D.A.3
Cramer, C.J.4
Truhlar, D.G.5
-
31
-
-
0033536456
-
-
Zou, X., Sun, Y. and Kuntz, I.D., J. Am. Chem. Soc., 121 (1999) 8033.
-
(1999)
J. Am. Chem. Soc.
, vol.121
, pp. 8033
-
-
Zou, X.1
Sun, Y.2
Kuntz, I.D.3
-
32
-
-
0542382495
-
-
Wong, M.W., Frisch, M.J. and Wiberg, K.B., J. Am. Chem. Soc., 113 (1991) 4776.
-
(1991)
J. Am. Chem. Soc.
, vol.113
, pp. 4776
-
-
Wong, M.W.1
Frisch, M.J.2
Wiberg, K.B.3
-
38
-
-
6744275832
-
-
For example an additional 10-12 potential term
-
For example an additional 10-12 potential term.
-
-
-
-
39
-
-
0004223995
-
-
(UCSF), University of California, San Francisco, CA
-
Pearlman, D.A., Case, D.A., Caldwell, J.W., Ross, W.R., Cheatham, T.E., Ferguson, D.M., Seibel, G.L., Singh, U.C., Weiner, P. and Kollman, P.A., AMBER4.1 (UCSF), University of California, San Francisco, CA, 1995.
-
(1995)
AMBER4.1
-
-
Pearlman, D.A.1
Case, D.A.2
Caldwell, J.W.3
Ross, W.R.4
Cheatham, T.E.5
Ferguson, D.M.6
Seibel, G.L.7
Singh, U.C.8
Weiner, P.9
Kollman, P.A.10
-
40
-
-
84986512474
-
-
Brooks, B.R., Bruccoleri, R.E., Olafson, B.D., States, D.J., Swaminathan, S. and Karplus, M., J. Comput. Chem., 4 (1983) 187.
-
(1983)
J. Comput. Chem.
, vol.4
, pp. 187
-
-
Brooks, B.R.1
Bruccoleri, R.E.2
Olafson, B.D.3
States, D.J.4
Swaminathan, S.5
Karplus, M.6
-
41
-
-
6744233504
-
-
Yale University, New Haven, CT
-
Jorgensen, W.L., BOSS3.6, Yale University, New Haven, CT, 1996.
-
(1996)
BOSS3.6
-
-
Jorgensen, W.L.1
-
43
-
-
0000218385
-
-
Lyne, P.D., Hodoscek, M. and Karplus, M., J. Phys. Chem., 103 (1999) 3462.
-
(1999)
J. Phys. Chem.
, vol.103
, pp. 3462
-
-
Lyne, P.D.1
Hodoscek, M.2
Karplus, M.3
-
45
-
-
2642622572
-
-
Stanton, R.V., Peräkylä, M., BaKowies, D. and Kollman, P.A., J. Am. Chem. Soc., 120 (1998) 3448.
-
(1998)
J. Am. Chem. Soc.
, vol.120
, pp. 3448
-
-
Stanton, R.V.1
Peräkylä, M.2
BaKowies, D.3
Kollman, P.A.4
-
46
-
-
0032560959
-
-
Srinivasan, J., Cheatham, T.E., Cieplak, P., Kollman, P.A. and Case, D.A., J. Am. Chem. Soc., 120 (1998) 9401.
-
(1998)
J. Am. Chem. Soc.
, vol.120
, pp. 9401
-
-
Srinivasan, J.1
Cheatham, T.E.2
Cieplak, P.3
Kollman, P.A.4
Case, D.A.5
-
48
-
-
0033405041
-
-
Chong, L.T., Duan, Y., Wang, L., Massova, I. and Kollman, P.A., Proc. Natl. Acad. Sci. USA, 96 (1999) 14330.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 14330
-
-
Chong, L.T.1
Duan, Y.2
Wang, L.3
Massova, I.4
Kollman, P.A.5
-
49
-
-
33846823909
-
-
Darden, T., York, D. and Pedersen, L., J. Chem, Phys., 98 (1993) 10089.
-
(1993)
J. Chem, Phys.
, vol.98
, pp. 10089
-
-
Darden, T.1
York, D.2
Pedersen, L.3
-
50
-
-
0029011701
-
-
Cornell, W.D., Cieplak, P., Bayly, C.I., Gould, I.R., Merz Jr., K.M., Ferguson, D.M., Spellmeyer, D.C., Fox, T., Caldwell, J.W. and Kollman, P.A., J. Am. Chem. Soc., 117 (1995) 5179.
-
(1995)
J. Am. Chem. Soc.
, vol.117
, pp. 5179
-
-
Cornell, W.D.1
Cieplak, P.2
Bayly, C.I.3
Gould, I.R.4
Merz Jr., K.M.5
Ferguson, D.M.6
Spellmeyer, D.C.7
Fox, T.8
Caldwell, J.W.9
Kollman, P.A.10
-
52
-
-
0000043930
-
-
Jayaram, B., Sprous, D. and Beveridge, D.L., J. Phys. Chem. B. 102 (1998) 9571.
-
(1998)
J. Phys. Chem. B
, vol.102
, pp. 9571
-
-
Jayaram, B.1
Sprous, D.2
Beveridge, D.L.3
-
53
-
-
0030040323
-
-
Sanner, M.F., Olson, A.J. and Spehner, J.C., Biopolymers, 38 (1996) 305.
-
(1996)
Biopolymers
, vol.38
, pp. 305
-
-
Sanner, M.F.1
Olson, A.J.2
Spehner, J.C.3
-
54
-
-
0031588025
-
-
Böttger, A., Böttger, V., Garcia-Echeverria, C., Chène, P., Hochkeppel, H.K., Sampson, W., Ang, K., Howard, S.F., Picksley, S.M. and Lane, D.P., J. Mol. Biol., 269 (1997) 744.
-
(1997)
J. Mol. Biol.
, vol.269
, pp. 744
-
-
Böttger, A.1
Böttger, V.2
Garcia-Echeverria, C.3
Chène, P.4
Hochkeppel, H.K.5
Sampson, W.6
Ang, K.7
Howard, S.F.8
Picksley, S.M.9
Lane, D.P.10
-
56
-
-
3042524904
-
-
Bayly, C.I., Cieplak, P., Cornell, W.D. and Kollman, P.A., J. Phys. Chem., 97 (1993) 10269.
-
(1993)
J. Phys. Chem.
, vol.97
, pp. 10269
-
-
Bayly, C.I.1
Cieplak, P.2
Cornell, W.D.3
Kollman, P.A.4
-
57
-
-
0032540358
-
-
a. Clackson, T., Ultsch, M.H., Wells, J.A. and de Vos, A.M., J. Mol. Biol., 277 (1998) 1111.
-
(1998)
J. Mol. Biol.
, vol.277
, pp. 1111
-
-
Clackson, T.1
Ultsch, M.H.2
Wells, J.A.3
De Vos, A.M.4
|