-
1
-
-
0036258111
-
The IARC TP53 database: New online mutation analysis and recommendations to users
-
DOI 10.1002/humu.10081
-
Olivier, M. et al. The IARC TP53 database: new online mutation analysis and recommendations to users. Hum. Mutat. 19, 607-614 (2002). (Pubitemid 34556481)
-
(2002)
Human Mutation
, vol.19
, Issue.6
, pp. 607-614
-
-
Olivier, M.1
Eeles, R.2
Hollstein, M.3
Khan, M.A.4
Harris, C.C.5
Hainaut, P.6
-
2
-
-
0035751937
-
Assessing TP53 status in human tumours to evaluate clinical outcome
-
Soussi, T. & Beroud, C. Assessing TP53 status in human tumours to evaluate clinical outcome. Nat. Rev. Cancer 1, 233-240 (2001). (Pubitemid 33741898)
-
(2001)
Nature Reviews Cancer
, vol.1
, Issue.3
, pp. 233-240
-
-
Soussi, T.1
Beroud, C.2
-
3
-
-
77956400377
-
The tumor suppressor p53: From structures to drug discovery
-
Joerger, A. C. & Fersht, A. R. The tumor suppressor p53: from structures to drug discovery. Cold Spring Harb. Persp. Biol. 2, a000919 (2010).
-
(2010)
Cold Spring Harb. Persp. Biol.
, vol.2
-
-
Joerger, A.C.1
Fersht, A.R.2
-
4
-
-
33845611951
-
Modeling the Therapeutic Efficacy of p53 Restoration in Tumors
-
DOI 10.1016/j.cell.2006.12.007, PII S0092867406015972
-
Martins, C. P., Brown-Swigart, L. & Evan, G. I. Modeling the therapeutic efficacy of p53 restoration in tumors. Cell 127, 1323-1334 (2006). (Pubitemid 44960417)
-
(2006)
Cell
, vol.127
, Issue.7
, pp. 1323-1334
-
-
Martins, C.P.1
Brown-Swigart, L.2
Evan, G.I.3
-
5
-
-
34047209861
-
Reactivation of mutant p53: Molecular mechanisms and therapeutic potential
-
DOI 10.1038/sj.onc.1210295, PII 1210295
-
Selivanova, G. & Wiman, K. G. Reactivation of mutant p53: molecular mechanisms and therapeutic potential. Oncogene 26, 2243-2254 (2007). (Pubitemid 46536645)
-
(2007)
Oncogene
, vol.26
, Issue.15
, pp. 2243-2254
-
-
Selivanova, G.1
Wiman, K.G.2
-
6
-
-
33846935466
-
Cancer biology: Gone but not forgotten
-
DOI 10.1038/nature05567, PII NATURE05567
-
Sharpless, N. E. & DePinho, R. A. Cancer biology: gone but not forgotten. Nature 445, 606-607 (2007). (Pubitemid 46232872)
-
(2007)
Nature
, vol.445
, Issue.7128
, pp. 606-607
-
-
Sharpless, N.E.1
DePinho, R.A.2
-
7
-
-
33846899456
-
Restoration of p53 function leads to tumour regression in vivo
-
DOI 10.1038/nature05541, PII NATURE05541
-
Ventura, A. et al. Restoration of p53 function leads to tumour regression in vivo. Nature 445, 661-665 (2007). (Pubitemid 46232887)
-
(2007)
Nature
, vol.445
, Issue.7128
, pp. 661-665
-
-
Ventura, A.1
Kirsch, D.G.2
McLaughlin, M.E.3
Tuveson, D.A.4
Grimm, J.5
Lintault, L.6
Newman, J.7
Reczek, E.E.8
Weissleder, R.9
Jacks, T.10
-
8
-
-
34047165842
-
Restoration of Wild-Type p53 Function in Human Tumors: Strategies for Efficient Cancer Therapy
-
DOI 10.1016/S0065-230X(06)97014-6, PII S0065230X06970146
-
Wiman, K. G. Restoration of wild-type p53 function in human tumors: strategies for efficient cancer therapy. Adv. Cancer Res. 97, 321-338 (2007). (Pubitemid 46528994)
-
(2007)
Advances in Cancer Research
, vol.97
, pp. 321-338
-
-
Wiman, K.G.1
-
9
-
-
33846937033
-
Senescence and tumour clearance is triggered by p53 restoration in murine liver carcinomas
-
DOI 10.1038/nature05529, PII NATURE05529
-
Xue, W. et al. Senescence and tumour clearance is triggered by p53 restoration in murine liver carcinomas. Nature 445, 656-660 (2007). (Pubitemid 46232886)
-
(2007)
Nature
, vol.445
, Issue.7128
, pp. 656-660
-
-
Xue, W.1
Zender, L.2
Miething, C.3
Dickins, R.A.4
Hernando, E.5
Krizhanovsky, V.6
Cordon-Cardo, C.7
Lowe, S.W.8
-
10
-
-
1842737710
-
A global suppressor motif for p53 cancer mutants
-
DOI 10.1073/pnas.0401162101
-
Baroni, T. E. et al. A global suppressor motif for p53 cancer mutants. Proc. Natl Acad. Sci. USA 101, 4930-4935 (2004). (Pubitemid 38469180)
-
(2004)
Proceedings of the National Academy of Sciences of the United States of America
, vol.101
, Issue.14
, pp. 4930-4935
-
-
Baroni, T.E.1
Wang, T.2
Qian, H.3
Dearth, L.R.4
Truong, L.N.5
Zeng, J.6
Denes, A.E.7
Chen, S.W.8
Brachmann, R.K.9
-
11
-
-
78651288290
-
All-codon scanning identifies p53 cancer rescue mutations
-
Baronio, R. et al. All-codon scanning identifies p53 cancer rescue mutations. Nucleic Acids Res. 38, 7079-7088 (2010).
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 7079-7088
-
-
Baronio, R.1
-
12
-
-
0032055501
-
Genetic selection of intragenic suppressor mutations that reverse the effect of common p53 cancer mutations
-
DOI 10.1093/emboj/17.7.1847
-
Brachmann, R. K., Yu, K., Eby, Y., Pavletich, N. P. & Boeke, J. D. Genetic selection of intragenic suppressor mutations that reverse the effect of common p53 cancer mutations. EMBO J. 17, 1847-1859 (1998). (Pubitemid 28154516)
-
(1998)
EMBO Journal
, vol.17
, Issue.7
, pp. 1847-1859
-
-
Brachmann, R.K.1
Yu, K.2
Eby, Y.3
Pavletich, N.P.4
Boeke, J.D.5
-
13
-
-
70349671213
-
Predicting positive p53 cancer rescue regions using Most Informative Positive (MIP) active learning
-
Danziger, S. A. et al. Predicting positive p53 cancer rescue regions using Most Informative Positive (MIP) active learning. PLoS Comput. Biol. 5, e1000498 (2009).
-
(2009)
PLoS Comput. Biol.
, vol.5
-
-
Danziger, S.A.1
-
14
-
-
33646752804
-
Functional census of mutation sequence spaces: The example of p53 cancer rescue mutants
-
IEEE ACM
-
Danziger, S. A. et al. Functional census of mutation sequence spaces: the example of p53 cancer rescue mutants. IEEE ACM Transact. Comput. Biol. Bioinform. IEEE ACM 3, 114-125 (2006).
-
(2006)
IEEE ACM Transact. Comput. Biol. Bioinform
, vol.3
, pp. 114-125
-
-
Danziger, S.A.1
-
15
-
-
34547875776
-
Choosing where to look next in a mutation sequence space: Active Learning of informative p53 cancer rescue mutants
-
DOI 10.1093/bioinformatics/btm166
-
Danziger, S. A., Zeng, J., Wang, Y., Brachmann, R. K. & Lathrop, R. H. Choosing where to look next in a mutation sequence space: active Learning of informative p53 cancer rescue mutants. Bioinformatics 23, i104-i114 (2007). (Pubitemid 47248454)
-
(2007)
Bioinformatics
, vol.23
, Issue.13
-
-
Danziger, S.A.1
Zeng, J.2
Wang, Y.3
Brachmann, R.K.4
Lathrop, R.H.5
-
16
-
-
0029823529
-
Structure-based rescue of common tumor-derived p53 mutants
-
DOI 10.1038/nm1096-1143
-
Wieczorek, A. M., Waterman, J. L., Waterman, M. J. & Halazonetis, T. D. Structure-based rescue of common tumor-derived p53 mutants. Nat. Med. 2, 1143-1146 (1996). (Pubitemid 26338636)
-
(1996)
Nature Medicine
, vol.2
, Issue.10
, pp. 1143-1146
-
-
Wieczorek, A.M.1
Waterman, J.L.F.2
Waterman, M.J.F.3
Halazonetis, T.D.4
-
17
-
-
0036949663
-
Mutant p53-dependent growth suppression distinguishes PRIMA-1 from known anticancer drugs: A statistical analysis of information in the National Cancer Institute database
-
DOI 10.1093/carcin/23.12.2011
-
Bykov, V. J., Issaeva, N., Selivanova, G. & Wiman, K. G. Mutant p53-dependent growth suppression distinguishes PRIMA-1 from known anticancer drugs: a statistical analysis of information in the National Cancer Institute database. Carcinogenesis 23, 2011-2018 (2002). (Pubitemid 36104953)
-
(2002)
Carcinogenesis
, vol.23
, Issue.12
, pp. 2011-2018
-
-
Bykov, V.J.N.1
Issaeva, N.2
Selivanova, G.3
Wiman, K.G.4
-
18
-
-
0036128899
-
Restoration of the tumor suppressor function to mutant p53 by a low-molecular-weight compound
-
DOI 10.1038/nm0302-282
-
Bykov, V. J. et al. Restoration of the tumor suppressor function to mutant p53 by a low-molecular-weight compound. Nat. Med. 8, 282-288 (2002). (Pubitemid 34250107)
-
(2002)
Nature Medicine
, vol.8
, Issue.3
, pp. 282-288
-
-
Bykov, V.J.N.1
Issaeva, N.2
Shilov, A.3
Hultcrantz, M.4
Pugacheva, E.5
Chumakov, P.6
Bergman, J.7
Wiman, K.G.8
Selivanova, G.9
-
19
-
-
24044466754
-
Reactivation of mutant p53 and induction of apoptosis in human tumor cells by maleimide analogs
-
DOI 10.1074/jbc.M501664200
-
Bykov, V. J. et al. Reactivation of mutant p53 and induction of apoptosis in human tumor cells by maleimide analogs. J. Biol. Chem. 280, 30384-30391 (2005). (Pubitemid 41216221)
-
(2005)
Journal of Biological Chemistry
, vol.280
, Issue.34
, pp. 30384-30391
-
-
Bykov, V.J.N.1
Issaeva, N.2
Zache, N.3
Shilov, A.4
Hultcrantz, M.5
Bergman, J.6
Selivanova, G.7
Wiman, K.G.8
-
20
-
-
0036191959
-
V272M) by the cytoprotective aminothiol WR1065 in the esophageal cancer cell line TE-1
-
DOI 10.1002/mc.10038
-
North, S., Pluquet, O., Maurici, D., El-Ghissassi, F. & Hainaut, P. Restoration of wild-type conformation and activity of a temperature-sensitive mutant of p53 (p53(V272M)) by the cytoprotective aminothiol WR1065 in the esophageal cancer cell line TE-1. Mol. Carcinog. 33, 181-188 (2002). (Pubitemid 34195199)
-
(2002)
Molecular Carcinogenesis
, vol.33
, Issue.3
, pp. 181-188
-
-
North, S.1
Pluquet, O.2
Maurici, D.3
Ghissassi, F.E.4
Hainaut, P.5
-
21
-
-
5144223189
-
Identification and structure-activity relationship studies of 3-methylene-2-norbornanone as potent anti-proliferative agents presumably working through p53 mediated apoptosis
-
DOI 10.1016/j.bmcl.2004.08.048, PII S0960894X0401056X
-
Reddy, N. L., Hill, J., Ye, L., Fernandes, P. B. & Stout, D. M. Identification and structure-activity relationship studies of 3-methylene-2-norbornanone as potent anti-proliferative agents presumably working through p53 mediated apoptosis. Bioorg. Med. Chem. Lett. 14, 5645-5649 (2004). (Pubitemid 39346361)
-
(2004)
Bioorganic and Medicinal Chemistry Letters
, vol.14
, Issue.22
, pp. 5645-5649
-
-
Reddy, N.L.1
Hill, J.2
Ye, L.3
Fernandes, P.B.4
Stout, D.M.5
-
22
-
-
43649096147
-
Mutant p53 targeting by the low molecular weight compound STIMA-1
-
Zache, N. et al. Mutant p53 targeting by the low molecular weight compound STIMA-1. Mol. Oncol. 2, 70-80 (2008).
-
(2008)
Mol. Oncol.
, vol.2
, pp. 70-80
-
-
Zache, N.1
-
23
-
-
48749103325
-
Targeted rescue of a destabilized mutant of p53 by an in silico screened drug
-
Boeckler, F. M. et al. Targeted rescue of a destabilized mutant of p53 by an in silico screened drug. Proc. Natl Acad. Sci. USA 105, 10360-10365 (2008).
-
(2008)
Proc. Natl Acad. Sci. USA
, vol.105
, pp. 10360-10365
-
-
Boeckler, F.M.1
-
24
-
-
84859993146
-
Halogen-Enriched Fragment Libraries as Leads for Drug Rescue of Mutant p53
-
Wilcken, R. et al. Halogen-Enriched Fragment Libraries as Leads for Drug Rescue of Mutant p53. J. Am. Chem. Soc. 134, 6810-6818 (2012).
-
(2012)
J. Am. Chem. Soc.
, vol.134
, pp. 6810-6818
-
-
Wilcken, R.1
-
25
-
-
84861368058
-
Allele-Specific p53 Mutant Reactivation
-
Yu, X., Vazquez, A., Levine, A. J. & Carpizo, D. R. Allele-Specific p53 Mutant Reactivation. Cancer Cell 21, 614-625 (2012).
-
(2012)
Cancer Cell
, vol.21
, pp. 614-625
-
-
Yu, X.1
Vazquez, A.2
Levine, A.J.3
Carpizo, D.R.4
-
26
-
-
65449144050
-
PRIMA-1 reactivates mutant p53 by covalent binding to the core domain
-
Lambert, J. M. et al. PRIMA-1 reactivates mutant p53 by covalent binding to the core domain. Cancer Cell 15, 376-388 (2009).
-
(2009)
Cancer Cell
, vol.15
, pp. 376-388
-
-
Lambert, J.M.1
-
27
-
-
77955175360
-
Pharmacological reactivation of mutant p53: From protein structure to the cancer patient
-
Wiman, K. G. Pharmacological reactivation of mutant p53: from protein structure to the cancer patient. Oncogene 29, 4245-4252 (2010).
-
(2010)
Oncogene
, vol.29
, pp. 4245-4252
-
-
Wiman, K.G.1
-
28
-
-
50249114683
-
An improved relaxed complex scheme for receptor flexibility in computer-aided drug design
-
Amaro, R. E., Baron, R. & McCammon, J. A. An improved relaxed complex scheme for receptor flexibility in computer-aided drug design. J. Comput. Aided Mol. Des. 22, 693-705 (2008).
-
(2008)
J. Comput. Aided Mol. Des.
, vol.22
, pp. 693-705
-
-
Amaro, R.E.1
Baron, R.2
McCammon, J.A.3
-
29
-
-
46849105028
-
Ensemble-based virtual screening reveals potential novel antiviral compounds for avian influenza neuraminidase
-
DOI 10.1021/jm8001197
-
Cheng, L. S. et al. Ensemble-based virtual screening reveals potential novel antiviral compounds for avian influenza neuraminidase. J. Med. Chem. 51, 3878-3894 (2008). (Pubitemid 351956517)
-
(2008)
Journal of Medicinal Chemistry
, vol.51
, Issue.13
, pp. 3878-3894
-
-
Cheng, L.S.1
Amaro, R.E.2
Xu, D.3
Li, W.W.4
Arzberger, P.W.5
McCammon, J.A.6
-
30
-
-
59649112203
-
Crystal structure of a p53 core tetramer bound to DNA
-
Malecka, K. A., Ho, W. C. & Marmorstein, R. Crystal structure of a p53 core tetramer bound to DNA. Oncogene 28, 325-333 (2009).
-
(2009)
Oncogene
, vol.28
, pp. 325-333
-
-
Malecka, K.A.1
Ho, W.C.2
Marmorstein, R.3
-
31
-
-
0037154149
-
A peptide that binds and stabilizes p53 core domain: Chaperone strategy for rescue of oncogenic mutants
-
DOI 10.1073/pnas.241629998
-
Friedler, A. et al. A peptide that binds and stabilizes p53 core domain: chaperone strategy for rescue of oncogenic mutants. Proc. Natl Acad. Sci. USA 99, 937-942 (2002). (Pubitemid 34106614)
-
(2002)
Proceedings of the National Academy of Sciences of the United States of America
, vol.99
, Issue.2
, pp. 937-942
-
-
Friedler, A.1
Hansson, L.O.2
Veprintsev, D.B.3
Freund, S.M.V.4
Rippin, T.M.5
Nikolova, P.V.6
Proctor, M.R.7
Rudiger, S.8
Fersht, A.R.9
-
32
-
-
78649658937
-
Stabilization of mutant p53 via alkylation of cysteines and effects on DNA binding
-
Kaar, J. L. et al. Stabilization of mutant p53 via alkylation of cysteines and effects on DNA binding. Prot. Sci. 19, 2267-2278 (2010).
-
(2010)
Prot. Sci.
, vol.19
, pp. 2267-2278
-
-
Kaar, J.L.1
-
33
-
-
0027983669
-
Crystal structure of a p53 tumor suppressor-DNA complex: Understanding tumorigenic mutations
-
Cho, Y., Gorina, S., Jeffrey, P. D. & Pavletich, N. P. Crystal structure of a p53 tumor suppressor-DNA complex: understanding tumorigenic mutations. Science 265, 346-355 (1994). (Pubitemid 24259959)
-
(1994)
Science
, vol.265
, Issue.5170
, pp. 346-355
-
-
Cho, Y.1
Gorina, S.2
Jeffrey, P.D.3
Pavletich, N.P.4
-
34
-
-
33947304781
-
Structure of the human p53 core domain in the absence of DNA
-
DOI 10.1107/S0907444906048499, PII S0907444906048499
-
Wang, Y., Rosengarth, A. & Luecke, H. Structure of the human p53 core domain in the absence of DNA. Acta crystallographica. Sect. D Biol Crystallogr. 63, 276-281 (2007). (Pubitemid 46438519)
-
(2007)
Acta Crystallographica Section D: Biological Crystallography
, vol.63
, Issue.3
, pp. 276-281
-
-
Wang, Y.1
Rosengarth, A.2
Luecke, H.3
-
35
-
-
81755165992
-
Crystal structure of a multidomain human p53 tetramer bound to the natural CDKN1A (p21) p53-response element
-
Emamzadah, S., Tropia, L. & Halazonetis, T. D. Crystal structure of a multidomain human p53 tetramer bound to the natural CDKN1A (p21) p53-response element. Mol. Cancer Res. 9, 1493-1499 (2011).
-
(2011)
Mol. Cancer Res.
, vol.9
, pp. 1493-1499
-
-
Emamzadah, S.1
Tropia, L.2
Halazonetis, T.D.3
-
36
-
-
79957894792
-
An induced fit mechanism regulates p53 DNA binding kinetics to confer sequence specificity
-
Petty, T. J. et al. An induced fit mechanism regulates p53 DNA binding kinetics to confer sequence specificity. EMBO J. 30, 2167-2176 (2011).
-
(2011)
EMBO J.
, vol.30
, pp. 2167-2176
-
-
Petty, T.J.1
-
37
-
-
33144474649
-
Solution structure of p53 core domain: Structural basis for its instability
-
DOI 10.1073/pnas.0510941103
-
Canadillas, J. M. et al. Solution structure of p53 core domain: structural basis for its instability. Proc. Natl Acad. Sci. USA 103, 2109-2114 (2006). (Pubitemid 43271631)
-
(2006)
Proceedings of the National Academy of Sciences of the United States of America
, vol.103
, Issue.7
, pp. 2109-2114
-
-
Perez Canadillas, J.M.1
Tidow, H.2
Freund, S.M.V.3
Rutherford, T.J.4
Ang, H.C.5
Fersht, A.R.6
-
38
-
-
34347329257
-
Human p53 is inhibited by glutathionylation of cysteines present in the proximal DNA-Binding domain during oxidative stress
-
DOI 10.1021/bi700425y
-
Velu, C. S., Niture, S. K., Doneanu, C. E., Pattabiraman, N. & Srivenugopal, K. S. Human p53 is inhibited by glutathionylation of cysteines present in the proximal DNA-binding domain during oxidative stress. Biochemistry 46, 7765-7780 (2007). (Pubitemid 47016060)
-
(2007)
Biochemistry
, vol.46
, Issue.26
, pp. 7765-7780
-
-
Velu, C.S.1
Niture, S.K.2
Doneanu, C.E.3
Pattabiraman, N.4
Srivenugopal, K.S.5
-
39
-
-
0031447171
-
Thermodynamic stability of wild-type and mutant p53 core domain
-
DOI 10.1073/pnas.94.26.14338
-
Bullock, A. N. et al. Thermodynamic stability of wild-type and mutant p53 core domain. Proc. Natl Acad. Sci. USA 94, 14338-14342 (1997). (Pubitemid 28041374)
-
(1997)
Proceedings of the National Academy of Sciences of the United States of America
, vol.94
, Issue.26
, pp. 14338-14342
-
-
Bullock, A.N.1
Henckel, J.2
Dedecker, B.S.3
Johnson, C.M.4
Nikolova, P.V.5
Proctor, M.R.6
Lane, D.P.7
Fersht, A.R.8
-
40
-
-
0034594995
-
Quantitative analysis of residual folding and DNA binding in mutant p53 core domain: Definition of mutant states for rescue in cancer therapy
-
Bullock, A. N., Henckel, J. & Fersht, A. R. Quantitative analysis of residual folding and DNA binding in mutant p53 core domain: definition of mutant states for rescue in cancer therapy. Oncogene 19, 1245-1256 (2000). (Pubitemid 30160617)
-
(2000)
Oncogene
, vol.19
, Issue.10
, pp. 1245-1256
-
-
Bullock, A.N.1
Henckel, J.2
Fersht, A.R.3
-
41
-
-
79956071405
-
Interaction of the p53 DNA-binding domain with its n-terminal extension modulates the stability of the p53 tetramer
-
Natan, E. et al. Interaction of the p53 DNA-binding domain with its n-terminal extension modulates the stability of the p53 tetramer. J. Mol. Biol. 409, 358-368 (2011).
-
(2011)
J. Mol. Biol.
, vol.409
, pp. 358-368
-
-
Natan, E.1
-
42
-
-
80055090215
-
Ensemble-based computational approach discriminates functional activity of p53 cancer and rescue mutants
-
Demir, O. et al. Ensemble-based computational approach discriminates functional activity of p53 cancer and rescue mutants. PLoS Comput. Biol. 7, e1002238 (2011).
-
(2011)
PLoS Comput. Biol.
, vol.7
-
-
Demir, O.1
-
43
-
-
67649422714
-
An open source platform for ligand pocket detection
-
Le Guilloux, V., Schmidtke, P. & Tuffery, P. Fpocket: an open source platform for ligand pocket detection. BMC Bioinf. 10, 168 (2009).
-
(2009)
BMC Bioinf.
, vol.10
, pp. 168
-
-
Le Guilloux, V.1
Schmidtke, P.2
Fpocket, T.P.3
-
44
-
-
61449104961
-
Fragment-based identification of druggable 'hot spots' of proteins using Fourier domain correlation techniques
-
Brenke, R. et al. Fragment-based identification of druggable 'hot spots' of proteins using Fourier domain correlation techniques. Bioinformatics 25, 621-627 (2009).
-
(2009)
Bioinformatics
, vol.25
, pp. 621-627
-
-
Brenke, R.1
-
45
-
-
84863177576
-
Using targeted transgenic reporter mice to study promoter-specific p53 transcriptional activity
-
Goh, A. M. et al. Using targeted transgenic reporter mice to study promoter-specific p53 transcriptional activity. Proc. Natl Acad. Sci. USA 109, 1685-1690 (2012).
-
(2012)
Proc. Natl Acad. Sci. USA
, vol.109
, pp. 1685-1690
-
-
Goh, A.M.1
-
46
-
-
33750470057
-
Chemical screening methods to identify ligands that promote protein stability, protein crystallization, and structure determination
-
DOI 10.1073/pnas.0605224103
-
Vedadi, M. et al. Chemical screening methods to identify ligands that promote protein stability, protein crystallization, and structure determination. Proc. Natl Acad. Sci. USA 103, 15835-15840 (2006). (Pubitemid 44657553)
-
(2006)
Proceedings of the National Academy of Sciences of the United States of America
, vol.103
, Issue.43
, pp. 15835-15840
-
-
Vedadi, M.1
Niesen, F.H.2
Allali-Hassani, A.3
Fedorov, O.Y.4
Finerty Jr., P.J.5
Wasney, G.A.6
Yeung, R.7
Arrowsmith, C.8
Ball, L.J.9
Berglund, H.10
Hui, R.11
Marsden, B.D.12
Nordlund, P.13
Sundstrom, M.14
Weigelt, J.15
Edwards, A.M.16
-
47
-
-
33644877685
-
The PMDB Protein Model Database
-
Castrignano, T., De Meo, P. D., Cozzetto, D., Talamo, I. G. & Tramontano, A. The PMDB Protein Model Database. Nucleic Acids Res. 34, D306-D309 (2006).
-
(2006)
Nucleic Acids Res.
, vol.34
-
-
Castrignano, T.1
De Meo, P.D.2
Cozzetto, D.3
Talamo, I.G.4
Tramontano, A.5
-
48
-
-
58049201323
-
-
University of California
-
Case, D. A. et al. AMBER 10 (University of California, 2008).
-
(2008)
AMBER 10
-
-
Case, D.A.1
-
49
-
-
0004016501
-
Comparison of simple potential functions for simulating liquid water
-
Jorgensen, W. L., Chandrasekhar, J., Madura, J. D., Impey, R. W. & Klein, M. L. Comparison of simple potential functions for simulating liquid water. J. Chem. Phys. 79, 926-935 (1983).
-
(1983)
J. Chem. Phys.
, vol.79
, pp. 926-935
-
-
Jorgensen, W.L.1
Chandrasekhar, J.2
Madura, J.D.3
Impey, R.W.4
Klein, M.L.5
-
50
-
-
0000510540
-
Novel zinc protein molecular dynamics simulations: Steps toward antiangiogenesis for cancer treatment
-
Pang, Y.-P. Novel zinc protein molecular dynamics simulations: steps toward antiangiogenesis for cancer treatment. J. Mol. Model 5, 196-202 (1999).
-
(1999)
J. Mol. Model
, vol.5
, pp. 196-202
-
-
Pang, Y.-P.1
-
51
-
-
0031718310
-
Homology modeling, model and software evaluation: Three related resources
-
DOI 10.1093/bioinformatics/14.6.523
-
Rodriguez, R., Chinea, G., Lopez, N., Pons, T. & Vriend, G. Homology modeling, model and software evaluation: three related resources. Bioinformatics 14, 523-528 (1998). (Pubitemid 28416766)
-
(1998)
Bioinformatics
, vol.14
, Issue.6
, pp. 523-528
-
-
Rodriguez, R.1
Chinea, G.2
Lopez, N.3
Pons, T.4
Vriend, G.5
-
52
-
-
74549178560
-
MolProbity: All-atom structure validation for macromolecular crystallography
-
Chen, V. B. et al. MolProbity: all-atom structure validation for macromolecular crystallography. Acta crystallographica. Sec. D Biol. Crystallogr. 66, 12-21 (2010).
-
(2010)
Acta Crystallographica. Sec. D Biol. Crystallogr.
, vol.66
, pp. 12-21
-
-
Chen, V.B.1
-
53
-
-
33748518255
-
Comparison of multiple amber force fields and development of improved protein backbone parameters
-
DOI 10.1002/prot.21123
-
Hornak, V. et al. Comparison of multiple Amber force fields and development of improved protein backbone parameters. Proteins 65, 712-725 (2006). (Pubitemid 44583220)
-
(2006)
Proteins: Structure, Function and Genetics
, vol.65
, Issue.3
, pp. 712-725
-
-
Hornak, V.1
Abel, R.2
Okur, A.3
Strockbine, B.4
Roitberg, A.5
Simmerling, C.6
-
54
-
-
27344436659
-
Scalable molecular dynamics with NAMD
-
DOI 10.1002/jcc.20289
-
Phillips, J. C. et al. Scalable molecular dynamics with NAMD. J. Comput. Chem. 26, 1781-1802 (2005). (Pubitemid 43078511)
-
(2005)
Journal of Computational Chemistry
, vol.26
, Issue.16
, pp. 1781-1802
-
-
Phillips, J.C.1
Braun, R.2
Wang, W.3
Gumbart, J.4
Tajkhorshid, E.5
Villa, E.6
Chipot, C.7
Skeel, R.D.8
Kale, L.9
Schulten, K.10
-
55
-
-
33748538349
-
Automatic atom type and bond type perception in molecular mechanical calculations
-
DOI 10.1016/j.jmgm.2005.12.005, PII S1093326305001737
-
Wang, J., Wang, W., Kollman, P. A. & Case, D. A. Automatic atom type and bond type perception in molecular mechanical calculations. J. Mol. Graph. Model 25, 247-260 (2006). (Pubitemid 44363172)
-
(2006)
Journal of Molecular Graphics and Modelling
, vol.25
, Issue.2
, pp. 247-260
-
-
Wang, J.1
Wang, W.2
Kollman, P.A.3
Case, D.A.4
-
56
-
-
2942532422
-
Development and testing of a general amber force field
-
Wang, J., Wolf, R. M., Caldwell, J. W., Kollman, P. A. & Case, D. A. Development and testing of a general amber force field. J. Comput. Chem. 25, 1157-1174 (2004).
-
(2004)
J. Comput. Chem.
, vol.25
, pp. 1157-1174
-
-
Wang, J.1
Wolf, R.M.2
Caldwell, J.W.3
Kollman, P.A.4
Case, D.A.5
-
57
-
-
0029878720
-
VMD: Visual molecular dynamics
-
DOI 10.1016/0263-7855(96)00018-5
-
Humphrey, W., Dalke, A. & Schulten, K. VMD: visual molecular dynamics. J. Mol. Graph. 14, 33-38 27-38 (1996). (Pubitemid 26152973)
-
(1996)
Journal of Molecular Graphics
, vol.14
, Issue.1
, pp. 33-38
-
-
Humphrey, W.1
Dalke, A.2
Schulten, K.3
-
58
-
-
34548667196
-
Dynamics, hydration, and motional averaging of a loop-gated artificial protein cavity: The W191G mutant of cytochrome c peroxidase in water as revealed by molecular dynamics simulations
-
DOI 10.1021/bi700866x
-
Baron, R. & McCammon, J. A. Dynamics, hydration, and motional averaging of a loop-gated artificial protein cavity: the W191G mutant of cytochrome c peroxidase in water as revealed by molecular dynamics simulations. Biochemistry 46, 10629-10642 (2007). (Pubitemid 47417256)
-
(2007)
Biochemistry
, vol.46
, Issue.37
, pp. 10629-10642
-
-
Baron, R.1
McCammon, J.A.2
-
59
-
-
46249092554
-
GROMACS 4: Algorithms for highly efficient, load-balanced, and scalable molecular simulation
-
Hess, B., Kutzner, C., Spoel, D. v. d. & Lindahl, E. GROMACS 4: algorithms for highly efficient, load-balanced, and scalable molecular simulation. J. Chem. Theory Comput. 4, 435-447 (2008).
-
(2008)
J. Chem. Theory Comput.
, vol.4
, pp. 435-447
-
-
Hess, B.1
Kutzner, C.2
Spoel, D.V.D.3
Lindahl, E.4
-
60
-
-
76149120388
-
AutoDock Vina: Improving the speed and accuracy of docking with a new scoring function, efficient optimization, and multithreading
-
Trott, O. & Olson, A. J. AutoDock Vina: improving the speed and accuracy of docking with a new scoring function, efficient optimization, and multithreading. J. Comput. Chem. 31, 455-461 (2010).
-
(2010)
J. Comput. Chem.
, vol.31
, pp. 455-461
-
-
Trott, O.1
Olson, A.J.2
|