-
1
-
-
38349173560
-
Single-molecule tracking of mRNA exiting from RNA polymerase II
-
10.1073/pnas.0703815105 0027-8424
-
Andrecka J, Lewis R, Brückner F, Lehmann E, Cramer P and Michaelis J 2008 Single-molecule tracking of mRNA exiting from RNA polymerase II Proc. Natl Acad. Sci. USA 105 135-40
-
(2008)
Proc. Natl Acad. Sci. USA
, vol.105
, pp. 135-140
-
-
Andrecka, J.1
Lewis, R.2
Brückner, F.3
Lehmann, E.4
Cramer, P.5
Michaelis, J.6
-
2
-
-
79959384777
-
The effect of Brownian motion of fluorescent probes on measuring nanoscale distances by Förster resonance energy transfer
-
10.1063/1.3598109 0021-9606 225102
-
Badali D and Gradinaru C C 2011 The effect of Brownian motion of fluorescent probes on measuring nanoscale distances by Förster resonance energy transfer J. Chem. Phys. 134 225102
-
(2011)
J. Chem. Phys.
, vol.134
-
-
Badali, D.1
Gradinaru, C.C.2
-
3
-
-
34250184742
-
Imaging the lateral diffusion of membrane molecules with quantum dots
-
10.1038/nprot.2006.429 1754-2189
-
Bannai H, Levi S, Schweizer C, Dahan M and Triller A 2007 Imaging the lateral diffusion of membrane molecules with quantum dots Nature Protocols 1 2628-34
-
(2007)
Nature Protocols
, vol.1
, pp. 2628-2634
-
-
Bannai, H.1
Levi, S.2
Schweizer, C.3
Dahan, M.4
Triller, A.5
-
4
-
-
18044373456
-
Short-range spectroscopic ruler based on a single-molecule optical switch
-
DOI 10.1103/PhysRevLett.94.108101, 108101
-
Bates M, Blosser T R and Zhuang X 2005 Short-range spectroscopic ruler based on a single-molecule optical switch Phys. Rev. Lett. 94 108101 (Pubitemid 40607195)
-
(2005)
Physical Review Letters
, vol.94
, Issue.10
, pp. 1-4
-
-
Bates, M.1
Blosser, T.R.2
Zhuang, X.3
-
5
-
-
39749169657
-
Probing transient copper Chaperone-Wilson disease protein interactions at the single-molecule level with nanovesicle trapping
-
DOI 10.1021/ja7107867
-
Benítez J J, Keller A M, Ochieng P, Yatsunyk L A, Huffman D L, Rosenzweig A C and Chen P 2008 Probing transient copper Chaperone-Wilson disease protein interactions at the single-molecule level with nanovesicle trapping J. Am. Chem. Soc. 130 2446-7 (Pubitemid 351304754)
-
(2008)
Journal of the American Chemical Society
, vol.130
, Issue.8
, pp. 2446-2447
-
-
Benitez, J.J.1
Keller, A.M.2
Ochieng, P.3
Yatsunyk, L.A.4
Huffman, D.L.5
Rosenzweig, A.C.6
Chen, P.7
-
6
-
-
33747179417
-
Imaging intracellular fluorescent proteins at nanometer resolution
-
DOI 10.1126/science.1127344
-
Betzig E, Patterson G H, Sougrat R, Lindwasser O W, Olenych S, Bonifacino J S, Davidson M W, Lippincott-Schwartz J and Hess H F 2006 Imaging intracellular fluorescent proteins at nanometer resolution Science 313 1642-5 (Pubitemid 44414039)
-
(2006)
Science
, vol.313
, Issue.5793
, pp. 1642-1645
-
-
Betzig, E.1
Patterson, G.H.2
Sougrat, R.3
Lindwasser, O.W.4
Olenych, S.5
Bonifacino, J.S.6
Davidson, M.W.7
Lippincott-Schwartz, J.8
Hess, H.F.9
-
7
-
-
0035905687
-
Processive tanslocation and DNA unwinding by individual RecBCD enzyme molecules
-
DOI 10.1038/35053131
-
Bianco P R, Brewer L R, Corzett M, Balhorn R, Yeh Y, Kowalczykowski S C and Baskin R J 2001 Processive translocation and DNA unwinding by individual RecBCD enzyme molecules Nature 409 374-8 (Pubitemid 32151246)
-
(2001)
Nature
, vol.409
, Issue.6818
, pp. 374-378
-
-
Bianco, P.R.1
Brewer, L.R.2
Corzett, M.3
Balhorn, R.4
Yeh, Y.5
Kowalczykowski, S.C.6
Baskin, R.J.7
-
8
-
-
4744365694
-
TRNA selection and kinetic proofreading in translation
-
DOI 10.1038/nsmb831
-
Blanchard S C, Gonzalez R L, Kim H D, Chu S and Puglisi J D 2004 tRNA selection and kinetic proofreading in translation Nature Struct. Mol. Biol. 11 1008-14 (Pubitemid 39315306)
-
(2004)
Nature Structural and Molecular Biology
, vol.11
, Issue.10
, pp. 1008-1014
-
-
Blanchard, S.C.1
Gonzalez Jr., R.L.2
Kim, H.D.3
Chu, S.4
Puglisi, J.D.5
-
9
-
-
0035819204
-
Immobilization in surface-tethered lipid vesicles as a new tool for single biomolecule spectroscopy
-
DOI 10.1021/jp012016x
-
Boukobza E, Sonnenfeld A and Haran G 2001 Immobilization in surface-tethered lipid vesicles as a new tool for single biomolecule spectroscopy J. Phys. Chem. B 105 12165-70 (Pubitemid 35338375)
-
(2001)
Journal of Physical Chemistry B
, vol.105
, Issue.48
, pp. 12165-12170
-
-
Boukobza, E.1
Sonnenfeld, A.2
Haran, G.3
-
10
-
-
33746702015
-
Interlaced optical force-fluorescence measurements for single molecule biophysics
-
DOI 10.1529/biophysj.106.082602
-
Brau R R, Tarsa P B, Ferrer J M, Lee P and Lang M J 2006 Interlaced optical force-fluorescence measurements for single molecule biophysics Biophys. J. 91 1069-77 (Pubitemid 44161939)
-
(2006)
Biophysical Journal
, vol.91
, Issue.3
, pp. 1069-1077
-
-
Brau, R.R.1
Tarsa, P.B.2
Ferrer, J.M.3
Lee, P.4
Lang, M.J.5
-
11
-
-
82555179173
-
Protein dynamics and mechanisms controlling the rotational behaviour of the bacterial flagellar motor
-
10.1016/j.mib.2011.09.009 1369-5274
-
Brown M T, Delalez N J and Armitage J P 2011 Protein dynamics and mechanisms controlling the rotational behaviour of the bacterial flagellar motor Curr. Opin. Microbiol. 14 734-40
-
(2011)
Curr. Opin. Microbiol.
, vol.14
, pp. 734-740
-
-
Brown, M.T.1
Delalez, N.J.2
Armitage, J.P.3
-
12
-
-
0024733407
-
Intermediates and barrier crossing in a random energy model (with applications to protein folding)
-
10.1021/j100356a007 0022-3654
-
Bryngelson J D and Wolynes P G 1989 Intermediates and barrier crossing in a random energy model (with applications to protein folding) J. Phys. Chem. 93 6902-15
-
(1989)
J. Phys. Chem.
, vol.93
, pp. 6902-6915
-
-
Bryngelson, J.D.1
Wolynes, P.G.2
-
13
-
-
77955436585
-
Promoter melting triggered by bacterial RNA polymerase occurs in three steps
-
10.1073/pnas.1003533107 0027-8424
-
Chen J, Darst S A and Thirumalai D 2010 Promoter melting triggered by bacterial RNA polymerase occurs in three steps Proc. Natl Acad. Sci. USA 107 12523-8
-
(2010)
Proc. Natl Acad. Sci. USA
, vol.107
, pp. 12523-12528
-
-
Chen, J.1
Darst, S.A.2
Thirumalai, D.3
-
14
-
-
84857510185
-
Single-molecule fluorescence experiments determine protein folding transition path times
-
10.1126/science.1215768 0036-8075
-
Chung H S, McHale K, Louis J M and Eaton W A 2012 Single-molecule fluorescence experiments determine protein folding transition path times Science 335 981-4
-
(2012)
Science
, vol.335
, pp. 981-984
-
-
Chung, H.S.1
McHale, K.2
Louis, J.M.3
Eaton, W.A.4
-
16
-
-
84861892611
-
A rule of seven in Watson-Crick base-pairing of mismatched sequences
-
10.1038/nsmb.2294 1545-9993
-
Cisse I I, Kim H and Ha T 2012 A rule of seven in Watson-Crick base-pairing of mismatched sequences Nature Struct. Mol. Biol. 19 623-7
-
(2012)
Nature Struct. Mol. Biol.
, vol.19
, pp. 623-627
-
-
Cisse, I.I.1
Kim, H.2
Ha, T.3
-
17
-
-
13444291091
-
Three-color single-molecule fluorescence resonance energy transfer
-
DOI 10.1002/cphc.200400261
-
Clamme J-P and Deniz A A 2005 Three-color single-molecule fluorescence resonance energy transfer ChemPhysChem 6 74-7 (Pubitemid 40203540)
-
(2005)
ChemPhysChem
, vol.6
, Issue.1
, pp. 74-77
-
-
Clamme, J.-P.1
Deniz, A.A.2
-
18
-
-
79953292607
-
Ultrahigh-resolution optical trap with single-fluorophore sensitivity
-
10.1038/nmeth.1574 1548-7091
-
Comstock M J, Ha T and Chemla Y R 2011 Ultrahigh-resolution optical trap with single-fluorophore sensitivity Nature Methods 8 335-40
-
(2011)
Nature Methods
, vol.8
, pp. 335-340
-
-
Comstock, M.J.1
Ha, T.2
Chemla, Y.R.3
-
19
-
-
44449125068
-
Spontaneous Intersubunit Rotation in Single Ribosomes
-
DOI 10.1016/j.molcel.2008.05.004, PII S1097276508003341
-
Cornish P V, Ermolenko D N, Noller H F and Ha T 2008 Spontaneous intersubunit rotation in single ribosomes Mol. Cell 30 578-88 (Pubitemid 351760964)
-
(2008)
Molecular Cell
, vol.30
, Issue.5
, pp. 578-588
-
-
Cornish, P.V.1
Ermolenko, D.N.2
Noller, H.F.3
Ha, T.4
-
20
-
-
62449216538
-
Following movement of the L1 stalk between three functional states in single ribosomes
-
10.1073/pnas.0813180106 0027-8424
-
Cornish P V, Ermolenko D N, Staple D W, Hoang L, Hickerson R P, Noller H F and Ha T 2009 Following movement of the L1 stalk between three functional states in single ribosomes Proc. Natl Acad. Sci. USA 106 2571-6
-
(2009)
Proc. Natl Acad. Sci. USA
, vol.106
, pp. 2571-2576
-
-
Cornish, P.V.1
Ermolenko, D.N.2
Staple, D.W.3
Hoang, L.4
Hickerson, R.P.5
Noller, H.F.6
Ha, T.7
-
21
-
-
33750798087
-
-
Courty S, Bouzigues C, Luccardini C, Ehrensperger M V, Bonneau S, Dahan M and James I 2006a Methods in Enzymology (New York: Academic) pp 211-28
-
(2006)
Methods in Enzymology
, pp. 211-228
-
-
Courty, S.1
Bouzigues, C.2
Luccardini, C.3
Ehrensperger, M.V.4
Bonneau, S.5
Dahan, M.6
James, I.7
-
22
-
-
33746871112
-
Tracking individual kinesin motors in living cells using single quantum-dot imaging
-
DOI 10.1021/nl060921t
-
Courty S, Luccardini C, Bellaiche Y, Cappello G and Dahan M 2006b Tracking individual kinesin motors in living cells using single quantum-dot imaging Nano Lett. 6 1491-5 (Pubitemid 44195334)
-
(2006)
Nano Letters
, vol.6
, Issue.7
, pp. 1491-1495
-
-
Courty, S.1
Luccardini, C.2
Bellaiche, Y.3
Cappello, G.4
Dahan, M.5
-
23
-
-
0142116238
-
Diffusion Dynamics of Glycine Receptors Revealed by Single-Quantum Dot Tracking
-
DOI 10.1126/science.1088525
-
Dahan M, Levi S, Luccardini C, Rostaing P, Riveau B and Triller A 2003 Diffusion dynamics of glycine receptors revealed by single-quantum dot tracking Science 302 442-5 (Pubitemid 37296269)
-
(2003)
Science
, vol.302
, Issue.5644
, pp. 442-445
-
-
Dahan, M.1
Levi, S.2
Luccardini, C.3
Rostaing, P.4
Riveau, B.5
Triller, A.6
-
24
-
-
84861401482
-
Recent advances in magnetic tweezers
-
10.1146/annurev-biophys-122311-100544 1936-122X
-
De Vlaminck I and Dekker C 2012 Recent advances in magnetic tweezers Annu. Rev. Biophys. 41 453-72
-
(2012)
Annu. Rev. Biophys.
, vol.41
, pp. 453-472
-
-
De Vlaminck, I.1
Dekker, C.2
-
25
-
-
78349288412
-
Four-color single-molecule fluorescence with noncovalent dye labeling to monitor dynamic multimolecular complexes
-
10.2144/000113551 0736-6205
-
DeRocco V, Anderson T, Piehler J, Erie D A and Weninger K 2010 Four-color single-molecule fluorescence with noncovalent dye labeling to monitor dynamic multimolecular complexes Biotechniques 49 807-16
-
(2010)
Biotechniques
, vol.49
, pp. 807-816
-
-
Derocco, V.1
Anderson, T.2
Piehler, J.3
Erie, D.A.4
Weninger, K.5
-
26
-
-
84855828496
-
Cytoplasmic dynein moves through uncoordinated stepping of the AAA+ ring domains
-
10.1126/science.1215804 0036-8075
-
DeWitt M A, Chang A Y, Combs P A and Yildiz A 2012 Cytoplasmic dynein moves through uncoordinated stepping of the AAA+ ring domains Science 335 221-5
-
(2012)
Science
, vol.335
, pp. 221-225
-
-
Dewitt, M.A.1
Chang, A.Y.2
Combs, P.A.3
Yildiz, A.4
-
27
-
-
2242495402
-
In vivo imaging of quantum dots encapsulated in phospholipid micelles
-
DOI 10.1126/science.1077194
-
Dubertret B, Skourides P, Norris D J, Noireaux V, Brivanlou A H and Libchaber A 2002 In vivo imaging of quantum dots encapsulated in phospholipid micelles Science 298 1759-62 (Pubitemid 35404113)
-
(2002)
Science
, vol.298
, Issue.5599
, pp. 1759-1762
-
-
Dubertret, B.1
Skourides, P.2
Norris, D.J.3
Noireaux, V.4
Brivanlou, A.H.5
Libchaber, A.6
-
28
-
-
33645004171
-
Intrinsic rates and activation free energies from single-molecule pulling experiments
-
10.1103/PhysRevLett.96.108101 0031-9007 108101
-
Dudko O K, Hummer G and Szabo A 2006 Intrinsic rates and activation free energies from single-molecule pulling experiments Phys. Rev. Lett. 96 108101
-
(2006)
Phys. Rev. Lett.
, vol.96
-
-
Dudko, O.K.1
Hummer, G.2
Szabo, A.3
-
29
-
-
34250356054
-
Extracting kinetics from single-molecule force spectroscopy: Nanopore unzipping of DNA hairpins
-
DOI 10.1529/biophysj.106.102855
-
Dudko O K, Mathé J, Szabo A, Meller A and Hummer G 2007 Extracting kinetics from single-molecule force spectroscopy: nanopore unzipping of DNA hairpins Biophys. J. 92 4188-95 (Pubitemid 46910535)
-
(2007)
Biophysical Journal
, vol.92
, Issue.12
, pp. 4188-4195
-
-
Dudko, O.K.1
Mathe, J.2
Szabo, A.3
Meller, A.4
Hummer, G.5
-
30
-
-
58149234737
-
Real-time DNA sequencing from single polymerase molecules
-
10.1126/science.1162986 0036-8075
-
Eid J et al 2009 Real-time DNA sequencing from single polymerase molecules Science 323 133-8
-
(2009)
Science
, vol.323
, pp. 133-138
-
-
Eid, J.1
-
31
-
-
79952468635
-
Bacterial nanomachines: The flagellum and type III injectisome
-
10.1101/cshperspect.a000299 1943-0264 a000299
-
Erhardt M, Namba K and Hughes K T 2010 Bacterial nanomachines: the flagellum and type III injectisome Cold Spring Harbor Perspect. Biol. 2 a000299
-
(2010)
Cold Spring Harbor Perspect. Biol.
, vol.2
-
-
Erhardt, M.1
Namba, K.2
Hughes, K.T.3
-
32
-
-
70349470607
-
Allosteric collaboration between elongation factor G and the ribosomal L1 stalk directs tRNA movements during translation
-
10.1073/pnas.0908077106 0027-8424
-
Fei J, Bronson J E, Hofman J M, Srinivas R L, Wiggins C H and Gonzalez R L 2009 Allosteric collaboration between elongation factor G and the ribosomal L1 stalk directs tRNA movements during translation Proc. Natl Acad. Sci. USA 106 15702-7
-
(2009)
Proc. Natl Acad. Sci. USA
, vol.106
, pp. 15702-15707
-
-
Fei, J.1
Bronson, J.E.2
Hofman, J.M.3
Srinivas, R.L.4
Wiggins, C.H.5
Gonzalez, R.L.6
-
33
-
-
42949126723
-
Coupling of Ribosomal L1 Stalk and tRNA Dynamics during Translation Elongation
-
DOI 10.1016/j.molcel.2008.03.012, PII S1097276508002128
-
Fei J, Kosuri P, MacDougall D D and Gonzalez R L Jr 2008 Coupling of ribosomal L1 stalk and tRNA dynamics during translation elongation Mol. Cell 30 348-59 (Pubitemid 351615315)
-
(2008)
Molecular Cell
, vol.30
, Issue.3
, pp. 348-359
-
-
Fei, J.1
Kosuri, P.2
MacDougall, D.D.3
Gonzalez Jr., R.L.4
-
34
-
-
9244235535
-
Mechanism of ATP-dependent translocation of E. coli UvrD monomers along single-stranded DNA
-
DOI 10.1016/j.jmb.2004.10.005, PII S0022283604012860
-
Fischer C J, Maluf N K and Lohman T M 2004 Mechanism of ATP-dependent translocation of E. coli. UvrD monomers along single-stranded DNA J. Mol. Biol. 344 1287-309 (Pubitemid 39550478)
-
(2004)
Journal of Molecular Biology
, vol.344
, Issue.5
, pp. 1287-1309
-
-
Fischer, C.J.1
Maluf, N.K.2
Lohman, T.M.3
-
35
-
-
77953625418
-
Structure and dynamics of a processive brownian motor: The translating ribosome
-
10.1146/annurev-biochem-060408-173330 0066-4154
-
Frank J and Gonzalez R L 2010 Structure and dynamics of a processive brownian motor: the translating ribosome Annu. Rev. Biochem. 79 381-412
-
(2010)
Annu. Rev. Biochem.
, vol.79
, pp. 381-412
-
-
Frank, J.1
Gonzalez, R.L.2
-
36
-
-
77954814800
-
Conformational sampling of aminoacyl-tRNA during selection on the bacterial ribosome
-
10.1016/j.jmb.2010.04.038 0022-2836
-
Geggier P, Dave R, Feldman M B, Terry D S, Altman R B, Munro J B and Blanchard S C 2010 Conformational sampling of aminoacyl-tRNA during selection on the bacterial ribosome J. Mol. Biol. 399 576-95
-
(2010)
J. Mol. Biol.
, vol.399
, pp. 576-595
-
-
Geggier, P.1
Dave, R.2
Feldman, M.B.3
Terry, D.S.4
Altman, R.B.5
Munro, J.B.6
Blanchard, S.C.7
-
37
-
-
60749121148
-
Walking the walk: How kinesin and dynein coordinate their steps
-
10.1016/j.ceb.2008.12.002 0955-0674
-
Gennerich A and Vale R D 2009 Walking the walk: how kinesin and dynein coordinate their steps Curr. Opin. Cell Biol. 21 59-67
-
(2009)
Curr. Opin. Cell Biol.
, vol.21
, pp. 59-67
-
-
Gennerich, A.1
Vale, R.D.2
-
38
-
-
36249028655
-
Single-molecule FRET with diffusion and conformational dynamics
-
DOI 10.1021/jp075255e
-
Gopich I V and Szabo A 2007 Single-molecule FRET with diffusion and conformational dynamics J. Phys. Chem. B 111 12925-32 (Pubitemid 350136484)
-
(2007)
Journal of Physical Chemistry B
, vol.111
, Issue.44
, pp. 12925-12932
-
-
Gopich, I.V.1
Szabo, A.2
-
39
-
-
68149166290
-
Decoding the pattern of photon colors in single-molecule FRET
-
10.1021/jp903671p 1520-6106 B
-
Gopich I V and Szabo A 2009 Decoding the pattern of photon colors in single-molecule FRET J. Phys. Chem. B 113 10965-73
-
(2009)
J. Phys. Chem.
, vol.113
, pp. 10965-10973
-
-
Gopich, I.V.1
Szabo, A.2
-
40
-
-
84861216803
-
Theory of the energy transfer efficiency and fluorescence lifetime distribution in single-molecule FRET
-
10.1073/pnas.1205120109 0027-8424
-
Gopich I V and Szabo A 2012 Theory of the energy transfer efficiency and fluorescence lifetime distribution in single-molecule FRET Proc. Natl Acad. Sci. 109 7747-52
-
(2012)
Proc. Natl Acad. Sci.
, vol.109
, pp. 7747-7752
-
-
Gopich, I.V.1
Szabo, A.2
-
41
-
-
70350738240
-
Regulation of the protein-conducting channel by a bound ribosome
-
10.1016/j.str.2009.09.010 0969-2126
-
Gumbart J, Trabuco L G, Schreiner E, Villa E and Schulten K 2009 Regulation of the protein-conducting channel by a bound ribosome Structure 17 1453-64
-
(2009)
Structure
, vol.17
, pp. 1453-1464
-
-
Gumbart, J.1
Trabuco, L.G.2
Schreiner, E.3
Villa, E.4
Schulten, K.5
-
42
-
-
0029987587
-
Probing the interaction between two single molecules: Fluorescence resonance energy transfer between a single donor and a single acceptor
-
DOI 10.1073/pnas.93.13.6264
-
Ha T, Enderle T, Ogletree D F, Chemla D S, Selvin P R and Weiss S 1996 Probing the interaction between two single molecules: fluorescence resonance energy transfer between a single donor and a single acceptor Proc. Natl Acad. Sci. USA 93 6264-8 (Pubitemid 26230293)
-
(1996)
Proceedings of the National Academy of Sciences of the United States of America
, vol.93
, Issue.13
, pp. 6264-6268
-
-
Ha, T.1
Enderle, Th.2
Ogletree, D.F.3
Chemla, D.S.4
Selvin, P.R.5
Weiss, S.6
-
43
-
-
84859899534
-
Photophysics of fluorescent probes for single-molecule biophysics and super-resolution imaging
-
10.1146/annurev-physchem-032210-103340 0066-426X
-
Ha T and Tinnefeld P 2012 Photophysics of fluorescent probes for single-molecule biophysics and super-resolution imaging Annu. Rev. Phys. Chem. 63 595-617
-
(2012)
Annu. Rev. Phys. Chem.
, vol.63
, pp. 595-617
-
-
Ha, T.1
Tinnefeld, P.2
-
44
-
-
46749097630
-
Three-dimensional nanoscopy of colloidal crystals
-
10.1021/nl073164n 1530-6984
-
Harke B, Ullal C K, Keller J and Hell S W 2008 Three-dimensional nanoscopy of colloidal crystals Nano Lett. 8 1309-13
-
(2008)
Nano Lett.
, vol.8
, pp. 1309-1313
-
-
Harke, B.1
Ullal, C.K.2
Keller, J.3
Hell, S.W.4
-
45
-
-
0028460042
-
Breaking the diffraction resolution limit by stimulated emission: Stimulated-emission-depletion fluorescence microscopy
-
10.1364/OL.19.000780 0146-9592
-
Hell S W and Wichmann J 1994 Breaking the diffraction resolution limit by stimulated emission: stimulated-emission-depletion fluorescence microscopy Opt. Lett. 19 780-2
-
(1994)
Opt. Lett.
, vol.19
, pp. 780-782
-
-
Hell, S.W.1
Wichmann, J.2
-
46
-
-
0035942167
-
Visualization of unwinding activity of duplex RNA by DbpA, a DEAD box helicase, at single-molecule resolution by atomic force microscopy
-
DOI 10.1073/pnas.071372498
-
Henn A, Medalia O, Shi S-P, Steinberg M, Franceschi F and Sagi I 2001 Visualization of unwinding activity of duplex RNA by DbpA, a DEAD box helicase, at single-molecule resolution by atomic force microscopy Proc. Natl Acad. Sci. USA 98 5007-12 (Pubitemid 32397073)
-
(2001)
Proceedings of the National Academy of Sciences of the United States of America
, vol.98
, Issue.9
, pp. 5007-5012
-
-
Henn, A.1
Medalia, O.2
Shi, S.-P.3
Steinberg, M.4
Franceschi, F.5
Sagi, I.6
-
47
-
-
33845360042
-
Ultra-high resolution imaging by fluorescence photoactivation localization microscopy
-
DOI 10.1529/biophysj.106.091116
-
Hess S T, Girirajan T P K and Mason M D 2006 Ultra-high resolution imaging by fluorescence photoactivation localization microscopy Biophys. J. 91 4258-72 (Pubitemid 44887284)
-
(2006)
Biophysical Journal
, vol.91
, Issue.11
, pp. 4258-4272
-
-
Hess, S.T.1
Girirajan, T.P.K.2
Mason, M.D.3
-
48
-
-
4143071283
-
Single-molecule three-color FRET
-
DOI 10.1529/biophysj.104.043935
-
Hohng S, Joo C and Ha T 2004 Single-molecule three-color FRET Biophys. J. 87 1328-37 (Pubitemid 39095109)
-
(2004)
Biophysical Journal
, vol.87
, Issue.2
, pp. 1328-1337
-
-
Hohng, S.1
Joo, C.2
Ha, T.3
-
49
-
-
35348897239
-
Fluorescence-force spectroscopy maps two-dimensional reaction landscape of the holliday junction
-
DOI 10.1126/science.1146113
-
Hohng S, Zhou R, Nahas M K, Yu J, Schulten K, Lilley D M J and Ha T 2007 Fluorescence-force spectroscopy maps two-dimensional reaction landscape of the holliday junction Science 318 279-83 (Pubitemid 47574856)
-
(2007)
Science
, vol.318
, Issue.5848
, pp. 279-283
-
-
Hohng, S.1
Zhou, R.2
Nahas, M.K.3
Yu, J.4
Schulten, K.5
Lilley, D.M.J.6
Ha, T.7
-
50
-
-
67650762824
-
Super-resolution fluorescence microscopy
-
10.1146/annurev.biochem.77.061906.092014 0066-4154
-
Huang B, Bates M and Zhuang X 2009 Super-resolution fluorescence microscopy Annu. Rev. Biochem. 78 993-1016
-
(2009)
Annu. Rev. Biochem.
, vol.78
, pp. 993-1016
-
-
Huang, B.1
Bates, M.2
Zhuang, X.3
-
51
-
-
33947213307
-
Experimental test of connector rotation during DNA packaging into bacteriophage φ29 capsids
-
DOI 10.1371/journal.pbio.0050059
-
Hugel T, Michaelis J, Hetherington C L, Jardine P J, Grimes S, Walter J M, Falk W, Anderson D L and Bustamante C 2007 Experimental test of connector rotation during DNA packaging into bacteriophage 29 capsids PLoS Biol. 5 e59 (Pubitemid 46422974)
-
(2007)
PLoS Biology
, vol.5
, Issue.3
, pp. 0558-0567
-
-
Hugel, T.1
Michaelis, J.2
Hetherington, C.L.3
Jardine, P.J.4
Grimes, S.5
Walter, J.M.6
Falk, W.7
Anderson, D.L.8
Bustamante, C.9
-
52
-
-
79956335271
-
Protein induced fluorescence enhancement as a single molecule assay with short distance sensitivity
-
10.1073/pnas.1017672108 0027-8424
-
Hwang H, Kim H and Myong S 2011 Protein induced fluorescence enhancement as a single molecule assay with short distance sensitivity Proc. Natl Acad. Sci. USA 108 7414-8
-
(2011)
Proc. Natl Acad. Sci. USA
, vol.108
, pp. 7414-7418
-
-
Hwang, H.1
Kim, H.2
Myong, S.3
-
53
-
-
82955169485
-
A Structural perspective on the dynamics of kinesin motors
-
10.1016/j.bpj.2011.10.037 0006-3495
-
Hyeon C and Onuchic J 2011 A Structural perspective on the dynamics of kinesin motors Biophys. J. 101 2749-59
-
(2011)
Biophys. J.
, vol.101
, pp. 2749-2759
-
-
Hyeon, C.1
Onuchic, J.2
-
56
-
-
48249085467
-
Orientation dependence in fluorescent energy transfer between Cy3 and Cy5 terminally attached to double-stranded nucleic acids
-
10.1073/pnas.0801707105 0027-8424
-
Iqbal A, Arslan S, Okumus B, Wilson T J, Giraud G, Norman D G, Ha T and Lilley D M J 2008 Orientation dependence in fluorescent energy transfer between Cy3 and Cy5 terminally attached to double-stranded nucleic acids Proc. Natl Acad. Sci. USA 105 11176-81
-
(2008)
Proc. Natl Acad. Sci. USA
, vol.105
, pp. 11176-11181
-
-
Iqbal, A.1
Arslan, S.2
Okumus, B.3
Wilson, T.J.4
Giraud, G.5
Norman, D.G.6
Ha, T.7
Lilley, D.M.J.8
-
57
-
-
58749114577
-
Path of nascent polypeptide in exit tunnel revealed by molecular dynamics simulation of ribosome
-
10.1529/biophysj.108.134890 0006-3495
-
Ishida H and Hayward S 2008 Path of nascent polypeptide in exit tunnel revealed by molecular dynamics simulation of ribosome Biophys. J. 95 5962-73
-
(2008)
Biophys. J.
, vol.95
, pp. 5962-5973
-
-
Ishida, H.1
Hayward, S.2
-
58
-
-
0032559298
-
Simultaneous observation of individual ATPase and mechanical events by a single myosin molecule during interaction with actin
-
DOI 10.1016/S0092-8674(00)80911-3
-
Ishijima A, Kojima H, Funatsu T, Tokunaga M, Higuchi H, Tanaka H and Yanagida T 1998 Simultaneous Observation of individual ATPase and mechanical events by a single myosin molecule during interaction with actin Cell 92 161-71 (Pubitemid 28073040)
-
(1998)
Cell
, vol.92
, Issue.2
, pp. 161-171
-
-
Ishijima, A.1
Kojima, H.2
Funatsu, T.3
Tokunaga, M.4
Higuchi, H.5
Tanaka, H.6
Yanagida, T.7
-
59
-
-
79957590332
-
Probing cellular protein complexes using single-molecule pull-down
-
10.1038/nature10016 0028-0836
-
Jain A, Liu R, Ramani B, Arauz E, Ishitsuka Y, Ragunathan K, Park J, Chen J, Xiang Y K and Ha T 2011 Probing cellular protein complexes using single-molecule pull-down Nature 473 484-8
-
(2011)
Nature
, vol.473
, pp. 484-488
-
-
Jain, A.1
Liu, R.2
Ramani, B.3
Arauz, E.4
Ishitsuka, Y.5
Ragunathan, K.6
Park, J.7
Chen, J.8
Xiang, Y.K.9
Ha, T.10
-
60
-
-
22244478079
-
Cellular DNA replicases: Components and dynamics at the replication fork
-
DOI 10.1146/annurev.biochem.73.011303.073859
-
Johnson A and O'Donnell M 2005 Cellular DNA replicases: components and dynamics at the replication fork Annu. Rev. Biochem. 74 283-315 (Pubitemid 40995509)
-
(2005)
Annual Review of Biochemistry
, vol.74
, pp. 283-315
-
-
Johnson, A.1
O'Donnell, M.2
-
61
-
-
84863474422
-
Mitochondrial ATP synthase: Architecture, function and pathology
-
10.1007/s10545-011-9382-9 0141-8955
-
Jonckheere A, Smeitink J and Rodenburg R 2012 Mitochondrial ATP synthase: architecture, function and pathology J. Inherited Metabolic Disease 35 211-25
-
(2012)
J. Inherited Metabolic Disease
, vol.35
, pp. 211-225
-
-
Jonckheere, A.1
Smeitink, J.2
Rodenburg, R.3
-
62
-
-
79957823841
-
Fast, three-dimensional super-resolution imaging of live cells
-
10.1038/nmeth.1605 1548-7091
-
Jones S A, Shim S-H, He J and Zhuang X 2011 Fast, three-dimensional super-resolution imaging of live cells Nature Methods 8 499-505
-
(2011)
Nature Methods
, vol.8
, pp. 499-505
-
-
Jones, S.A.1
Shim, S.-H.2
He, J.3
Zhuang, X.4
-
63
-
-
50649121477
-
Advances in single-molecule fluorescence methods for molecular biology
-
10.1146/annurev.biochem.77.070606.101543 0066-4154
-
Joo C, Balci H, Ishitsuka Y, Buranachai C and Ha T 2008 Advances in single-molecule fluorescence methods for molecular biology Annu. Rev. Biochem. 77 51-76
-
(2008)
Annu. Rev. Biochem.
, vol.77
, pp. 51-76
-
-
Joo, C.1
Balci, H.2
Ishitsuka, Y.3
Buranachai, C.4
Ha, T.5
-
64
-
-
33746713745
-
Real-Time Observation of RecA Filament Dynamics with Single Monomer Resolution
-
DOI 10.1016/j.cell.2006.06.042, PII S0092867406009470
-
Joo C, McKinney S A, Nakamura M, Rasnik I, Myong S and Ha T 2006 Real-time observation of RecA filament dynamics with single monomer resolution Cell 126 515-27 (Pubitemid 44163610)
-
(2006)
Cell
, vol.126
, Issue.3
, pp. 515-527
-
-
Joo, C.1
McKinney, S.A.2
Nakamura, M.3
Rasnik, I.4
Myong, S.5
Ha, T.6
-
65
-
-
0028141855
-
Tracking of single fluorescent particles in three dimensions: Use of cylindrical optics to encode particle position
-
Kao H P and Verkman A S 1994 Tracking of single fluorescent particles in three dimensions: use of cylindrical optics to encode particle position Biophys. J. 67 1291-300 (Pubitemid 24272983)
-
(1994)
Biophysical Journal
, vol.67
, Issue.3
, pp. 1291-1300
-
-
Kao, H.P.1
Verkman, A.S.2
-
66
-
-
2942650138
-
Fluorescence-aided molecule sorting: Analysis of structure and interactions by alternating-laser excitation of single molecules
-
DOI 10.1073/pnas.0401690101
-
Kapanidis A N, Lee N K, Laurence T A, Doose S, Margeat E and Weiss S 2004 Fluorescence-aided molecule sorting: analysis of structure and interactions by alternating-laser excitation of single molecules Proc. Natl Acad. Sci. USA 101 8936-41 (Pubitemid 38781589)
-
(2004)
Proceedings of the National Academy of Sciences of the United States of America
, vol.101
, Issue.24
, pp. 8936-8941
-
-
Kapanidis, A.N.1
Lee, N.K.2
Laurence, T.A.3
Doose, S.4
Margeat, E.5
Weiss, S.6
-
67
-
-
33751212468
-
Initial transcription by RNA polymerase proceeds through a DNA-scrunching mechanism
-
DOI 10.1126/science.1131399
-
Kapanidis A N, Margeat E, Ho S O, Kortkhonjia E, Weiss S and Ebright R H 2006 Initial transcription by RNA polymerase proceeds through a DNA-scrunching mechanism Science 314 1144-7 (Pubitemid 44789044)
-
(2006)
Science
, vol.314
, Issue.5802
, pp. 1144-1147
-
-
Kapanidis, A.N.1
Margeat, E.2
Ho, S.O.3
Kortkhonjia, E.4
Weiss, S.5
Ebright, R.H.6
-
68
-
-
77955652704
-
A field guide to bacterial swarming motility
-
10.1038/nrmicro2405 1740-1526
-
Kearns D B 2010 A field guide to bacterial swarming motility Nature Rev. Microbiol. 8 634-44
-
(2010)
Nature Rev. Microbiol.
, vol.8
, pp. 634-644
-
-
Kearns, D.B.1
-
69
-
-
84855273566
-
Opening-closing dynamics of the mitochondrial transcription pre-initiation complex
-
10.1093/nar/gkr736 0305-1048
-
Kim H, Tang G-Q, Patel S S and Ha T 2011 Opening-closing dynamics of the mitochondrial transcription pre-initiation complex Nucl. Acids Res. 40 371-80
-
(2011)
Nucl. Acids Res.
, vol.40
, pp. 371-380
-
-
Kim, H.1
Tang, G.-Q.2
Patel, S.S.3
Ha, T.4
-
70
-
-
36549020733
-
Fluctuations of transfer RNAs between classical and hybrid states
-
DOI 10.1529/biophysj.107.109884
-
Kim H D, Puglisi J D and Chu S 2007 Fluctuations of transfer RNAs between classical and hybrid states Biophys. J. 93 3575-82 (Pubitemid 350190820)
-
(2007)
Biophysical Journal
, vol.93
, Issue.10
, pp. 3575-3582
-
-
Kim, H.D.1
Puglisi, J.D.2
Chu, S.3
-
71
-
-
33645770731
-
Folding-based molecular simulations reveal mechanisms of the rotary motor F1-ATPase
-
10.1073/pnas.0509642103 0027-8424
-
Koga N and Takada S 2006 Folding-based molecular simulations reveal mechanisms of the rotary motor F1-ATPase Proc. Natl Acad. Sci. USA 103 5367-72
-
(2006)
Proc. Natl Acad. Sci. USA
, vol.103
, pp. 5367-5372
-
-
Koga, N.1
Takada, S.2
-
72
-
-
17444366080
-
Simultaneous, coincident optical trapping and single-molecule fluorescence
-
10.1038/nmeth714 1548-7091
-
Lang M J, Fordyce P M, Engh A M, Neuman K C and Block S M 2004 Simultaneous, coincident optical trapping and single-molecule fluorescence Nature Methods 1 133-9
-
(2004)
Nature Methods
, vol.1
, pp. 133-139
-
-
Lang, M.J.1
Fordyce, P.M.2
Engh, A.M.3
Neuman, K.C.4
Block, S.M.5
-
73
-
-
0038780625
-
Water-soluble quantum dots for multiphoton fluorescence imaging in vivo
-
DOI 10.1126/science.1083780
-
Larson D R, Zipfel W R, Williams R M, Clark S W, Bruchez M P, Wise F W and Webb W W 2003 Water-soluble quantum dots for multiphoton fluorescence imaging in vivo Science 300 1434-6 (Pubitemid 36638163)
-
(2003)
Science
, vol.300
, Issue.5624
, pp. 1434-1436
-
-
Larson, D.R.1
Zipfel, W.R.2
Williams, R.M.3
Clark, S.W.4
Bruchez, M.P.5
Wise, F.W.6
Webb, W.W.7
-
74
-
-
84862991581
-
Elastic coupling between RNA degradation and unwinding by an exoribonuclease
-
10.1126/science.1216848 0036-8075
-
Lee G, Bratkowski M A, Ding F, Ke A and Ha T 2012 Elastic coupling between RNA degradation and unwinding by an exoribonuclease Science 336 1726-9
-
(2012)
Science
, vol.336
, pp. 1726-1729
-
-
Lee, G.1
Bratkowski, M.A.2
Ding, F.3
Ke, A.4
Ha, T.5
-
75
-
-
31844453991
-
DNA primase acts as a molecular brake in DNA replication
-
DOI 10.1038/nature04317, PII NATURE04317
-
Lee J-B, Hite R K, Hamdan S M, Sunney Xie X, Richardson C C and van Oijen A M 2006 DNA primase acts as a molecular brake in DNA replication Nature 439 621-4 (Pubitemid 43185389)
-
(2006)
Nature
, vol.439
, Issue.7076
, pp. 621-624
-
-
Lee, J.-B.1
Hite, R.K.2
Hamdan, S.M.3
Xie, X.S.4
Richardson, C.C.5
Van Oijen, A.M.6
-
76
-
-
78650272919
-
Single-molecule four-color FRET
-
10.1002/ange.201005402 0044-8249
-
Lee J, Lee S, Ragunathan K, Joo C, Ha T and Hohng S 2010a Single-molecule four-color FRET Angew. Chem. 122 10118-21
-
(2010)
Angew. Chem.
, vol.122
, pp. 10118-10121
-
-
Lee, J.1
Lee, S.2
Ragunathan, K.3
Joo, C.4
Ha, T.5
Hohng, S.6
-
77
-
-
77950444848
-
Minute negative superhelicity is sufficient to induce the B-Z transition in the presence of low tension
-
10.1073/pnas.0911528107 0027-8424
-
Lee M, Kim S H and Hong S-C 2010b Minute negative superhelicity is sufficient to induce the B-Z transition in the presence of low tension Proc. Natl Acad. Sci. USA 107 4985-90
-
(2010)
Proc. Natl Acad. Sci. USA
, vol.107
, pp. 4985-4990
-
-
Lee, M.1
Kim, S.H.2
Hong, S.-C.3
-
78
-
-
77957903226
-
Single-molecule three-color FRET with both negligible spectral overlap and long observation time
-
10.1371/journal.pone.0012270 1932-6203 e12270
-
Lee S, Lee J and Hohng S 2010c Single-molecule three-color FRET with both negligible spectral overlap and long observation time PLoS ONE 5 e12270
-
(2010)
PLoS ONE
, vol.5
-
-
Lee, S.1
Lee, J.2
Hohng, S.3
-
79
-
-
33846028172
-
Three-color alternating-laser excitation of single molecules: Monitoring multiple interactions and distances
-
DOI 10.1529/biophysj.106.093211
-
Lee N K, Kapanidis A N, Koh H R, Korlann Y, Ho S O, Kim Y, Gassman N, Kim S K and Weiss S 2007a Three-color alternating-laser excitation of single molecules: monitoring multiple interactions and distances Biophys. J. 92 303-12 (Pubitemid 46048438)
-
(2007)
Biophysical Journal
, vol.92
, Issue.1
, pp. 303-312
-
-
Nam, K.L.1
Kapanidis, A.N.2
Hye, R.K.3
Korlann, Y.4
Sam, O.H.5
Kim, Y.6
Gassman, N.7
Seong, K.K.8
Weiss, S.9
-
80
-
-
37849026396
-
Folding of 8-17 deoxyribozyme studied by three-color alternating-laser excitation of single molecules
-
10.1021/ja0725145 0002-7863
-
Lee N K, Koh H R, Han K Y and Kim S K 2007b Folding of 8-17 deoxyribozyme studied by three-color alternating-laser excitation of single molecules J. Am. Chem. Soc. 129 15526-34
-
(2007)
J. Am. Chem. Soc.
, vol.129
, pp. 15526-15534
-
-
Lee, N.K.1
Koh, H.R.2
Han, K.Y.3
Kim, S.K.4
-
81
-
-
35348852506
-
The role of fluctuations in tRNA selection by the ribosome
-
DOI 10.1073/pnas.0705988104
-
Lee T-H, Blanchard S C, Kim H D, Puglisi J D and Chu S 2007c The role of fluctuations in tRNA selection by the ribosome Proc. Natl Acad. Sci. USA 104 13661-5 (Pubitemid 350003377)
-
(2007)
Proceedings of the National Academy of Sciences of the United States of America
, vol.104
, Issue.34
, pp. 13661-13665
-
-
Lee, T.-H.1
Blanchard, S.C.2
Kim, H.D.3
Puglisi, J.D.4
Chu, S.5
-
82
-
-
0037474152
-
Zero-mode waveguides for single-molecule analysis at high concentrations
-
DOI 10.1126/science.1079700
-
Levene M J, Korlach J, Turner S W, Foquet M, Craighead H G and Webb W W 2003 Zero-mode waveguides for single-molecule analysis at high concentrations Science 299 682-6 (Pubitemid 36159478)
-
(2003)
Science
, vol.299
, Issue.5607
, pp. 682-686
-
-
Levene, H.J.1
Korlach, J.2
Turner, S.W.3
Foquet, M.4
Craighead, H.G.5
Webb, W.W.6
-
83
-
-
38049186506
-
Real-time observation of bacteriophage T4 gp41 helicase reveals an unwinding mechanism
-
10.1073/pnas.0709793104 0027-8424
-
Lionnet T, Spiering M M, Benkovic S J, Bensimon D and Croquette V 2007 Real-time observation of bacteriophage T4 gp41 helicase reveals an unwinding mechanism Proc. Natl Acad. Sci. USA 104 19790-5
-
(2007)
Proc. Natl Acad. Sci. USA
, vol.104
, pp. 19790-19795
-
-
Lionnet, T.1
Spiering, M.M.2
Benkovic, S.J.3
Bensimon, D.4
Croquette, V.5
-
84
-
-
56449114709
-
Slide into action: Dynamic shuttling of HIV reverse transcriptase on nucleic acid substrates
-
10.1126/science.1163108 0036-8075
-
Liu S, Abbondanzieri E A, Rausch J W, Grice S F J L and Zhuang X 2008 Slide into action: dynamic shuttling of HIV reverse transcriptase on nucleic acid substrates Science 322 1092-7
-
(2008)
Science
, vol.322
, pp. 1092-1097
-
-
Liu, S.1
Abbondanzieri, E.A.2
Rausch, J.W.3
Grice, S.F.J.L.4
Zhuang, X.5
-
86
-
-
82755186479
-
An entirely specific type i A-kinase anchoring protein that can sequester two molecules of protein kinase A at mitochondria
-
10.1073/pnas.1107182108 0027-8424
-
Means C K et al 2011 An entirely specific type I A-kinase anchoring protein that can sequester two molecules of protein kinase A at mitochondria Proc. Natl Acad. Sci. USA 108 E1227-35
-
(2011)
Proc. Natl Acad. Sci. USA
, vol.108
-
-
Means, C.K.1
-
87
-
-
19944433260
-
Quantum dots for live cells, in vivo imaging, and diagnostics
-
DOI 10.1126/science.1104274
-
Michalet X, Pinaud F F, Bentolila L A, Tsay J M, Doose S, Li J J, Sundaresan G, Wu A M, Gambhir S S and Weiss S 2005 Quantum dots for live cells, in vivo imaging, and diagnostics Science 307 538-44 (Pubitemid 40165671)
-
(2005)
Science
, vol.307
, Issue.5709
, pp. 538-544
-
-
Michalet, X.1
Pinaud, F.F.2
Bentolila, L.A.3
Tsay, J.M.4
Doose, S.5
Li, J.J.6
Sundaresan, G.7
Wu, A.M.8
Gambhir, S.S.9
Weiss, S.10
-
90
-
-
76249114762
-
Spontaneous formation of the unlocked state of the ribosome is a multistep process
-
10.1073/pnas.0908597107 0027-8424
-
Munro J B, Altman R B, Tung C-S, Cate J H D, Sanbonmatsu K Y and Blanchard S C 2010a Spontaneous formation of the unlocked state of the ribosome is a multistep process Proc. Natl Acad. Sci. USA 107 709-14
-
(2010)
Proc. Natl Acad. Sci. USA
, vol.107
, pp. 709-714
-
-
Munro, J.B.1
Altman, R.B.2
Tung, C.-S.3
Cate, J.H.D.4
Sanbonmatsu, K.Y.5
Blanchard, S.C.6
-
91
-
-
77149151868
-
A fast dynamic mode of the EF-G-bound ribosome
-
10.1038/emboj.2009.384 0261-4189
-
Munro J B, Altman R B, Tung C-S, Sanbonmatsu K Y and Blanchard S C 2010b A fast dynamic mode of the EF-G-bound ribosome EMBO J. 29 770-81
-
(2010)
EMBO J.
, vol.29
, pp. 770-781
-
-
Munro, J.B.1
Altman, R.B.2
Tung, C.-S.3
Sanbonmatsu, K.Y.4
Blanchard, S.C.5
-
92
-
-
34547595373
-
Spring-loaded mechanism of DNA unwinding by hepatitis C virus NS3 helicase
-
DOI 10.1126/science.1144130
-
Myong S, Bruno M M, Pyle A M and Ha T 2007 Spring-loaded mechanism of DNA unwinding by hepatitis C virus NS3 helicase Science 317 513-6 (Pubitemid 47196115)
-
(2007)
Science
, vol.317
, Issue.5837
, pp. 513-516
-
-
Myong, S.1
Bruno, M.M.2
Pyle, A.M.3
Ha, T.4
-
93
-
-
60749124538
-
Cytosolic viral sensor RIG-I is a 5'-triphosphate-dependent translocase on double-stranded RNA
-
10.1126/science.1168352 0036-8075
-
Myong S, Cui S, Cornish P V, Kirchhofer A, Gack M U, Jung J U, Hopfner K-P and Ha T 2009 Cytosolic viral sensor RIG-I is a 5'-triphosphate-dependent translocase on double-stranded RNA Science 323 1070-4
-
(2009)
Science
, vol.323
, pp. 1070-1074
-
-
Myong, S.1
Cui, S.2
Cornish, P.V.3
Kirchhofer, A.4
Gack, M.U.5
Jung, J.U.6
Hopfner, K.-P.7
Ha, T.8
-
94
-
-
27644514163
-
Repetitive shuttling of a motor protein on DNA
-
DOI 10.1038/nature04049, PII N04049
-
Myong S, Rasnik I, Joo C, Lohman T M and Ha T 2005 Repetitive shuttling of a motor protein on DNA Nature 437 1321-5 (Pubitemid 41568672)
-
(2005)
Nature
, vol.437
, Issue.7063
, pp. 1321-1325
-
-
Myong, S.1
Rasnik, I.2
Joo, C.3
Lohman, T.M.4
Ha, T.5
-
95
-
-
44449087047
-
Single-molecule force spectroscopy: Optical tweezers, magnetic tweezers and atomic force microscopy
-
DOI 10.1038/nmeth.1218, PII NMETH.1218
-
Neuman K C and Nagy A 2008 Single-molecule force spectroscopy: optical tweezers, magnetic tweezers and atomic force microscopy Nature Methods 5 491-505 (Pubitemid 351761756)
-
(2008)
Nature Methods
, vol.5
, Issue.6
, pp. 491-505
-
-
Neuman, K.C.1
Nagy, A.2
-
97
-
-
77955605175
-
PcrA helicase dismantles RecA filaments by reeling in DNA in uniform steps
-
10.1016/j.cell.2010.07.016 0092-8674
-
Park J, Myong S, Niedziela-Majka A, Lee K S, Yu J, Lohman T M and Ha T 2010 PcrA helicase dismantles RecA filaments by reeling in DNA in uniform steps Cell 142 544-55
-
(2010)
Cell
, vol.142
, pp. 544-555
-
-
Park, J.1
Myong, S.2
Niedziela-Majka, A.3
Lee, K.S.4
Yu, J.5
Lohman, T.M.6
Ha, T.7
-
98
-
-
62649175269
-
Three-dimensional, single-molecule fluorescence imaging beyond the diffraction limit by using a double-helix point spread function
-
10.1073/pnas.0900245106 0027-8424
-
Pavani S R P, Thompson M A, Biteen J S, Lord S J, Liu N, Twieg R J, Piestun R and Moerner W E 2009 Three-dimensional, single-molecule fluorescence imaging beyond the diffraction limit by using a double-helix point spread function Proc. Natl Acad. Sci. USA 106 2995-9
-
(2009)
Proc. Natl Acad. Sci. USA
, vol.106
, pp. 2995-2999
-
-
Pavani, S.R.P.1
Thompson, M.A.2
Biteen, J.S.3
Lord, S.J.4
Liu, N.5
Twieg, R.J.6
Piestun, R.7
Moerner, W.E.8
-
99
-
-
1542375262
-
Forward and Reverse Motion of Single RecBCD Molecules on DNA
-
Perkins T T, Li H-W, Dalal R V, Gelles J and Block S M 2004 Forward and reverse motion of single RecBCD molecules on DNA Biophys. J. 86 1640-8 (Pubitemid 38295598)
-
(2004)
Biophysical Journal
, vol.86
, Issue.3
, pp. 1640-1648
-
-
Perkins, T.T.1
Li, H.-W.2
Dalal, R.V.3
Gelles, J.4
Block, S.M.5
-
100
-
-
79955586247
-
Rapid three-dimensional isotropic imaging of living cells using Bessel beam plane illumination
-
10.1038/nmeth.1586 1548-7091
-
Planchon T A, Gao L, Milkie D E, Davidson M W, Galbraith J A, Galbraith C G and Betzig E 2011 Rapid three-dimensional isotropic imaging of living cells using Bessel beam plane illumination Nature Methods 8 417-23
-
(2011)
Nature Methods
, vol.8
, pp. 417-423
-
-
Planchon, T.A.1
Gao, L.2
Milkie, D.E.3
Davidson, M.W.4
Galbraith, J.A.5
Galbraith, C.G.6
Betzig, E.7
-
101
-
-
84856710211
-
Dynein achieves processive motion using both stochastic and coordinated stepping
-
10.1038/nsmb.2205 1545-9993
-
Qiu W, Derr N D, Goodman B S, Villa E, Wu D, Shih W and Reck-Peterson S L 2012 Dynein achieves processive motion using both stochastic and coordinated stepping Nature Struct. Mol. Biol. 19 193-200
-
(2012)
Nature Struct. Mol. Biol.
, vol.19
, pp. 193-200
-
-
Qiu, W.1
Derr, N.D.2
Goodman, B.S.3
Villa, E.4
Wu, D.5
Shih, W.6
Reck-Peterson, S.L.7
-
102
-
-
60549086229
-
Type III restriction enzymes communicate in 1D without looping between their target sites
-
10.1073/pnas.0807193106 0027-8424
-
Ramanathan S P, van Aelst K, Sears A, Peakman L J, Diffin F M, Szczelkun M D and Seidel R 2009 Type III restriction enzymes communicate in 1D without looping between their target sites Proc. Natl Acad. Sci. USA 106 1748-53
-
(2009)
Proc. Natl Acad. Sci. USA
, vol.106
, pp. 1748-1753
-
-
Ramanathan, S.P.1
Van Aelst, K.2
Sears, A.3
Peakman, L.J.4
Diffin, F.M.5
Szczelkun, M.D.6
Seidel, R.7
-
103
-
-
57649226492
-
The bacteriophage DNA packaging motor
-
10.1146/annurev.genet.42.110807.091545 0066-4197
-
Rao V B and Feiss M 2008 The bacteriophage DNA packaging motor Annu. Rev. Genetics 42 647-81
-
(2008)
Annu. Rev. Genetics
, vol.42
, pp. 647-681
-
-
Rao, V.B.1
Feiss, M.2
-
104
-
-
0033576727
-
A structural change in the kinesin motor protein that drives motility
-
10.1038/45483 0028-0836
-
Rice S et al 1999 A structural change in the kinesin motor protein that drives motility Nature 402 778-84
-
(1999)
Nature
, vol.402
, pp. 778-784
-
-
Rice, S.1
-
105
-
-
70350488396
-
SSB protein diffusion on single-stranded DNA stimulates RecA filament formation
-
10.1038/nature08442 0028-0836
-
Roy R, Kozlov A G, Lohman T M and Ha T 2009 SSB protein diffusion on single-stranded DNA stimulates RecA filament formation Nature 461 1092-7
-
(2009)
Nature
, vol.461
, pp. 1092-1097
-
-
Roy, R.1
Kozlov, A.G.2
Lohman, T.M.3
Ha, T.4
-
106
-
-
33749026335
-
Sub-diffraction-limit imaging by stochastic optical reconstruction microscopy (STORM)
-
DOI 10.1038/nmeth929, PII NMETH929
-
Rust M J, Bates M and Zhuang X 2006 Sub-diffraction-limit imaging by stochastic optical reconstruction microscopy (STORM) Nature Methods 3 793-6 (Pubitemid 44445825)
-
(2006)
Nature Methods
, vol.3
, Issue.10
, pp. 793-795
-
-
Rust, M.J.1
Bates, M.2
Zhuang, X.3
-
108
-
-
70350654363
-
What recent ribosome structures have revealed about the mechanism of translation
-
10.1038/nature08403 0028-0836
-
Schmeing T M and Ramakrishnan V 2009 What recent ribosome structures have revealed about the mechanism of translation Nature 461 1234-42
-
(2009)
Nature
, vol.461
, pp. 1234-1242
-
-
Schmeing, T.M.1
Ramakrishnan, V.2
-
109
-
-
78149495375
-
From protein folding to protein function and biomolecular binding by energy landscape theory
-
10.1016/j.coph.2010.09.012 1471-4892
-
Schug A and Onuchic J N 2010 From protein folding to protein function and biomolecular binding by energy landscape theory Curr. Opin. Pharmacol. 10 709-14
-
(2010)
Curr. Opin. Pharmacol.
, vol.10
, pp. 709-714
-
-
Schug, A.1
Onuchic, J.N.2
-
110
-
-
77953629213
-
Transcript elongation by RNA polymerase II
-
10.1146/annurev.biochem.78.062807.091425 0066-4154
-
Selth L A, Sigurdsson S and Svejstrup J Q 2010 Transcript elongation by RNA polymerase II Annu. Rev. Biochem. 79 271-93
-
(2010)
Annu. Rev. Biochem.
, vol.79
, pp. 271-293
-
-
Selth, L.A.1
Sigurdsson, S.2
Svejstrup, J.Q.3
-
111
-
-
0346258014
-
Backtracking by single RNA polymerase molecules observed at near-base-pair resolution
-
DOI 10.1038/nature02191
-
Shaevitz J W, Abbondanzieri E A, Landick R and Block S M 2003 Backtracking by single RNA polymerase molecules observed at near-base-pair resolution Nature 426 684-7 (Pubitemid 38009379)
-
(2003)
Nature
, vol.426
, Issue.6967
, pp. 684-687
-
-
Shaevitz, J.W.1
Abbondanzieri, E.A.2
Landick, R.3
Block, S.M.4
-
112
-
-
84864580820
-
Dynamic association of ORCA with pre-RC components regulates DNA replication initiation
-
10.1128/MCB.00362-12 0270-7306
-
Shen Z, Chakraborty A, Jain A, Giri S, Ha T, Prasanth K V and Prasanth S G 2012 Dynamic association of ORCA with pre-RC components regulates DNA replication initiation Mol. Cell. Biol. 32 3107-20
-
(2012)
Mol. Cell. Biol.
, vol.32
, pp. 3107-3120
-
-
Shen, Z.1
Chakraborty, A.2
Jain, A.3
Giri, S.4
Ha, T.5
Prasanth, K.V.6
Prasanth, S.G.7
-
114
-
-
84862945655
-
Single-molecule studies of viral DNA packaging
-
10.1016/j.coviro.2011.05.023 1879-6257
-
Smith D E 2011 Single-molecule studies of viral DNA packaging Curr. Opin. Virol. 1 134-41
-
(2011)
Curr. Opin. Virol.
, vol.1
, pp. 134-141
-
-
Smith, D.E.1
-
115
-
-
67650507150
-
Fluorescent lifetime trajectories of a single fluorophore reveal reaction intermediates during transcription initiation
-
10.1021/ja902861f 0002-7863
-
Sorokina M, Koh H-R, Patel S S and Ha T 2009 Fluorescent lifetime trajectories of a single fluorophore reveal reaction intermediates during transcription initiation J. Am. Chem. Soc. 131 9630-1
-
(2009)
J. Am. Chem. Soc.
, vol.131
, pp. 9630-9631
-
-
Sorokina, M.1
Koh, H.-R.2
Patel, S.S.3
Ha, T.4
-
116
-
-
0037437363
-
Three-dimensional tracking of fluorescent nanoparticles with subnanometer precision by use of off-focus imaging
-
10.1364/OL.28.000069 0146-9592
-
Speidel M, Jon A and Florin E-L 2003 Three-dimensional tracking of fluorescent nanoparticles with subnanometer precision by use of off-focus imaging Opt. Lett. 28 69-71
-
(2003)
Opt. Lett.
, vol.28
, pp. 69-71
-
-
Speidel, M.1
Jon, A.2
Florin, E.-L.3
-
117
-
-
79953050409
-
Single-molecule four-color FRET visualizes energy-transfer paths on DNA origami
-
10.1021/ja1105464 0002-7863
-
Stein I H, Steinhauer C and Tinnefeld P 2011 Single-molecule four-color FRET visualizes energy-transfer paths on DNA origami J. Am. Chem. Soc. 133 4193-5
-
(2011)
J. Am. Chem. Soc.
, vol.133
, pp. 4193-4195
-
-
Stein, I.H.1
Steinhauer, C.2
Tinnefeld, P.3
-
118
-
-
79951806203
-
Biomolecules under mechanical stress: A simple mechanism of complex behavior
-
10.1063/1.3533366 0021-9606 065102
-
Suzuki Y and Dudko O K 2011 Biomolecules under mechanical stress: a simple mechanism of complex behavior J. Chem. Phys. 134 065102
-
(2011)
J. Chem. Phys.
, vol.134
-
-
Suzuki, Y.1
Dudko, O.K.2
-
119
-
-
77952373083
-
Unidirectional Brownian motion observed in an in silico single molecule experiment of an actomyosin motor
-
10.1073/pnas.0911830107 0027-8424
-
Takano M, Terada T P and Sasai M 2010 Unidirectional Brownian motion observed in an in silico single molecule experiment of an actomyosin motor Proc. Natl Acad. Sci. USA 107 7769-74
-
(2010)
Proc. Natl Acad. Sci. USA
, vol.107
, pp. 7769-7774
-
-
Takano, M.1
Terada, T.P.2
Sasai, M.3
-
120
-
-
76049130687
-
Real-time observation of the transition from transcription initiation to elongation of the RNA polymerase
-
10.1073/pnas.0906979106 0027-8424
-
Tang G-Q, Roy R, Bandwar R P, Ha T and Patel S S 2009 Real-time observation of the transition from transcription initiation to elongation of the RNA polymerase Proc. Natl Acad. Sci. USA 106 22175-80
-
(2009)
Proc. Natl Acad. Sci. USA
, vol.106
, pp. 22175-22180
-
-
Tang, G.-Q.1
Roy, R.2
Bandwar, R.P.3
Ha, T.4
Patel, S.S.5
-
121
-
-
44449127089
-
Transcription Initiation in a Single-Subunit RNA Polymerase Proceeds through DNA Scrunching and Rotation of the N-Terminal Subdomains
-
DOI 10.1016/j.molcel.2008.04.003, PII S1097276508002633
-
Tang G-Q, Roy R, Ha T and Patel S S 2008 Transcription Initiation in a single-subunit RNA polymerase proceeds through DNA scrunching and rotation of the N-terminal subdomains Mol. Cell 30 567-77 (Pubitemid 351755060)
-
(2008)
Molecular Cell
, vol.30
, Issue.5
, pp. 567-577
-
-
Tang, G.-Q.1
Roy, R.2
Ha, T.3
Patel, S.S.4
-
122
-
-
34247635655
-
Detecting force-induced molecular transitions with fluorescence resonant energy transfer
-
DOI 10.1002/anie.200604546
-
Tarsa P B, Brau R R, Barch M, Ferrer J M, Freyzon Y, Matsudaira P and Lang M J 2007 Detecting force-induced molecular transitions with fluorescence resonant energy transfer Angew. Chem. Int. Edn 46 1999-2001 (Pubitemid 46973654)
-
(2007)
Angewandte Chemie - International Edition
, vol.46
, Issue.12
, pp. 1999-2001
-
-
Tarsa, P.B.1
Brau, R.R.2
Barch, M.3
Ferrer, J.M.4
Freyzon, Y.5
Matsudaira, P.6
Lang, M.J.7
-
123
-
-
77951642717
-
Rigor to post-rigor transition in myosin: V. Link between the dynamics and the supporting architecture
-
10.1016/j.str.2010.01.019 0969-2126
-
Tehver R and Thirumalai D 2010 Rigor to post-rigor transition in myosin: V. Link between the dynamics and the supporting architecture Structure 18 471-81
-
(2010)
Structure
, vol.18
, pp. 471-481
-
-
Tehver, R.1
Thirumalai, D.2
-
125
-
-
0036231415
-
Precise nanometer localization analysis for individual fluorescent probes
-
Thompson R E, Larson D R and Webb W W 2002 Precise nanometer localization analysis for individual fluorescent probes Biophys. J. 82 2775-83 (Pubitemid 34441314)
-
(2002)
Biophysical Journal
, vol.82
, Issue.5
, pp. 2775-2783
-
-
Thompson, R.E.1
Larson, D.R.2
Webb, W.W.3
-
126
-
-
34547611047
-
Three-dimensional particle tracking via bifocal imaging
-
DOI 10.1021/nl0709120
-
Toprak E, Balci H, Blehm B H and Selvin P R 2007 Three-dimensional particle tracking via bifocal imaging Nano Lett. 7 2043-5 (Pubitemid 47197589)
-
(2007)
Nano Letters
, vol.7
, Issue.7
, pp. 2043-2045
-
-
Toprak, E.1
Balci, H.2
Blehm, B.H.3
Selvin, P.R.4
-
127
-
-
69149085424
-
Why kinesin is so processive
-
10.1073/pnas.0808396106 0027-8424
-
Toprak E, Yildiz A, Hoffman M T, Rosenfeld S S and Selvin P R 2009 Why kinesin is so processive Proc. Natl Acad. Sci. USA 106 12717-22
-
(2009)
Proc. Natl Acad. Sci. USA
, vol.106
, pp. 12717-12722
-
-
Toprak, E.1
Yildiz, A.2
Hoffman, M.T.3
Rosenfeld, S.S.4
Selvin, P.R.5
-
128
-
-
77952589053
-
Recognition of the regulatory nascent chain TnaC by the ribosome
-
10.1016/j.str.2010.02.011 0969-2126
-
Trabuco L G, Harrison C B, Schreiner E and Schulten K 2010a Recognition of the regulatory nascent chain TnaC by the ribosome Structure 18 627-37
-
(2010)
Structure
, vol.18
, pp. 627-637
-
-
Trabuco, L.G.1
Harrison, C.B.2
Schreiner, E.3
Schulten, K.4
-
129
-
-
77956935085
-
The role of L1 stalk-tRNA interaction in the ribosome elongation cycle
-
10.1016/j.jmb.2010.07.056 0022-2836
-
Trabuco L G, Schreiner E, Eargle J, Cornish P, Ha T, Luthey-Schulten Z and Schulten K 2010b The role of L1 stalk-tRNA interaction in the ribosome elongation cycle J. Mol. Biol. 402 741-60
-
(2010)
J. Mol. Biol.
, vol.402
, pp. 741-760
-
-
Trabuco, L.G.1
Schreiner, E.2
Eargle, J.3
Cornish, P.4
Ha, T.5
Luthey-Schulten, Z.6
Schulten, K.7
-
130
-
-
42949089487
-
Flexible Fitting of Atomic Structures into Electron Microscopy Maps Using Molecular Dynamics
-
DOI 10.1016/j.str.2008.03.005, PII S0969212608001330
-
Trabuco L G, Villa E, Mitra K, Frank J and Schulten K 2008 Flexible fitting of atomic structures into electron microscopy maps using molecular dynamics Struct. 16 673-83 (Pubitemid 351615021)
-
(2008)
Structure
, vol.16
, Issue.5
, pp. 673-683
-
-
Trabuco, L.G.1
Villa, E.2
Mitra, K.3
Frank, J.4
Schulten, K.5
-
131
-
-
84860334486
-
Dynamic architecture of a minimal RNA polymerase II open promoter complex
-
10.1016/j.molcel.2012.02.008 1097-2765
-
Treutlein B, Muschielok A, Andrecka J, Jawhari A, Buchen C, Kostrewa D, Hög F, Cramer P and Michaelis J 2012 Dynamic architecture of a minimal RNA polymerase II open promoter complex Mol. Cell 46 136-46
-
(2012)
Mol. Cell
, vol.46
, pp. 136-146
-
-
Treutlein, B.1
Muschielok, A.2
Andrecka, J.3
Jawhari, A.4
Buchen, C.5
Kostrewa, D.6
Hög, F.7
Cramer, P.8
Michaelis, J.9
-
132
-
-
77951107295
-
Real-time tRNA transit on single translating ribosomes at codon resolution
-
10.1038/nature08925 0028-0836
-
Uemura S, Aitken C E, Korlach J, Flusberg B A, Turner S W and Puglisi J D 2010 Real-time tRNA transit on single translating ribosomes at codon resolution Nature 464 1012-7
-
(2010)
Nature
, vol.464
, pp. 1012-1017
-
-
Uemura, S.1
Aitken, C.E.2
Korlach, J.3
Flusberg, B.A.4
Turner, S.W.5
Puglisi, J.D.6
-
133
-
-
0037459061
-
The molecular motor toolbox for intracellular transport
-
DOI 10.1016/S0092-8674(03)00111-9
-
Vale R D 2003 The molecular motor toolbox for intracellular transport Cell 112 467-80 (Pubitemid 36263080)
-
(2003)
Cell
, vol.112
, Issue.4
, pp. 467-480
-
-
Vale, R.D.1
-
134
-
-
0343415156
-
The way things move: Looking under the hood of molecular motor proteins
-
DOI 10.1126/science.288.5463.88
-
Vale R D and Milligan R A 2000 The way things move: looking under the hood of molecular motor proteins Science 288 88-95 (Pubitemid 30203035)
-
(2000)
Science
, vol.288
, Issue.5463
, pp. 88
-
-
Vale, R.D.1
Milligan, R.A.2
-
135
-
-
48349090299
-
See me, feel me: Methods to concurrently visualize and manipulate single DNA molecules and associated proteins
-
10.1093/nar/gkn412 0305-1048
-
van Mameren J, Peterman E J G and Wuite G J L 2008 See me, feel me: methods to concurrently visualize and manipulate single DNA molecules and associated proteins Nucl. Acids Res. 36 4381-9
-
(2008)
Nucl. Acids Res.
, vol.36
, pp. 4381-4389
-
-
Van Mameren, J.1
Peterman, E.J.G.2
Wuite, G.J.L.3
-
136
-
-
81855198087
-
All tangled up: How cells direct, manage and exploit topoisomerase function
-
10.1038/nrm3228 1471-0072
-
Vos S M, Tretter E M, Schmidt B H and Berger J M 2011 All tangled up: how cells direct, manage and exploit topoisomerase function Nature Rev. Mol. Cell. Biol. 12 827-41
-
(2011)
Nature Rev. Mol. Cell. Biol.
, vol.12
, pp. 827-841
-
-
Vos, S.M.1
Tretter, E.M.2
Schmidt, B.H.3
Berger, J.M.4
-
137
-
-
42049108013
-
Video-rate far-field optical nanoscopy dissects synaptic vesicle movement
-
DOI 10.1126/science.1154228
-
Westphal V, Rizzoli S O, Lauterbach M A, Kamin D, Jahn R and Hell S W 2008 Video-rate far-field optical nanoscopy dissects synaptic vesicle movement Science 320 246-9 (Pubitemid 351521423)
-
(2008)
Science
, vol.320
, Issue.5873
, pp. 246-249
-
-
Westphal, V.1
Rizzoli, S.O.2
Lauterbach, M.A.3
Kamin, D.4
Jahn, R.5
Hell, S.W.6
-
138
-
-
77952717308
-
Accommodation of aminoacyl-tRNA into the ribosome involves reversible excursions along multiple pathways
-
10.1261/rna.2035410 1355-8382
-
Whitford P C, Geggier P, Altman R B, Blanchard S C, Onuchic J N and Sanbonmatsu K Y 2010 Accommodation of aminoacyl-tRNA into the ribosome involves reversible excursions along multiple pathways RNA 16 1196-204
-
(2010)
RNA
, vol.16
, pp. 1196-1204
-
-
Whitford, P.C.1
Geggier, P.2
Altman, R.B.3
Blanchard, S.C.4
Onuchic, J.N.5
Sanbonmatsu, K.Y.6
-
139
-
-
82755171020
-
Dynamic views of ribosome function: Energy landscapes and ensembles
-
10.1007/978-3-7091-0215-2-24
-
Whitford P C et al 2011 Dynamic views of ribosome function: energy landscapes and ensembles Ribosomes (Vienna: Springer) pp 303-19
-
(2011)
Ribosomes
, pp. 303-319
-
-
Whitford, P.C.1
-
140
-
-
0141993702
-
Protein conformational dynamics probed by single-molecule electron transfer
-
DOI 10.1126/science.1086911
-
Yang H, Luo G, Karnchanaphanurach P, Louie T-M, Rech I, Cova S, Xun L and Xie X S 2003 Protein conformational dynamics probed by single-molecule electron transfer Science 302 262-6 (Pubitemid 37248752)
-
(2003)
Science
, vol.302
, Issue.5643
, pp. 262-266
-
-
Yang, H.1
Luo, G.2
Karnchanaphanurach, P.3
Louie, T.-M.4
Rech, I.5
Cova, S.6
Xun, L.7
Xie, X.S.8
-
141
-
-
0037461522
-
Probing single-molecule dynamics photon by photon
-
10.1063/1.1521154 0021-9606
-
Yang H and Xie X S 2002 Probing single-molecule dynamics photon by photon J. Chem. Phys. 117 10965
-
(2002)
J. Chem. Phys.
, vol.117
, pp. 10965
-
-
Yang, H.1
Xie, X.S.2
-
142
-
-
79959936612
-
Single-molecule approach to immunoprecipitated protein complexes: Insights into miRNA uridylation
-
10.1038/embor.2011.100 1469-221X
-
Yeom K-H, Heo I, Lee J, Hohng S, Kim V N and Joo C 2011 Single-molecule approach to immunoprecipitated protein complexes: insights into miRNA uridylation EMBO Rep. 12 690-6
-
(2011)
EMBO Rep.
, vol.12
, pp. 690-696
-
-
Yeom, K.-H.1
Heo, I.2
Lee, J.3
Hohng, S.4
Kim, V.N.5
Joo, C.6
-
143
-
-
0037832404
-
Myosin V walks hand-over-hand: Single fluorophore imaging with 1.5-nm localization
-
DOI 10.1126/science.1084398
-
Yildiz A, Forkey J N, McKinney S A, Ha T, Goldman Y E and Selvin P R 2003 Myosin V walks hand-over-hand: single fluorophore imaging with 1.5-nm localization Science 300 2061-5 (Pubitemid 36760126)
-
(2003)
Science
, vol.300
, Issue.5628
, pp. 2061-2065
-
-
Yildiz, A.1
Forkey, J.N.2
McKinney, S.A.3
Ha, T.4
Goldman, Y.E.5
Selvin, P.R.6
-
144
-
-
4444364789
-
Myosin VI steps via a hand-over-hand mechanism with its lever arm undergoing fluctuations when attached to actin
-
DOI 10.1074/jbc.C400252200
-
Yildiz A, Park H, Safer D, Yang Z, Chen L-Q, Selvin P R and Sweeney H L 2004a Myosin VI steps via a hand-over-hand mechanism with its lever arm undergoing fluctuations when attached to actin J. Biolog. Chem. 279 37223-6 (Pubitemid 39195426)
-
(2004)
Journal of Biological Chemistry
, vol.279
, Issue.36
, pp. 37223-37226
-
-
Yildiz, A.1
Park, H.2
Safer, D.3
Yang, Z.4
Chen, L.-Q.5
Selvin, P.R.6
Sweeney, H.L.7
-
145
-
-
0942279641
-
Kinesin Walks Hand-Over-Hand
-
DOI 10.1126/science.1093753
-
Yildiz A, Tomishige M, Vale R D and Selvin P R 2004b Kinesin walks hand-over-hand Science 303 676-8 (Pubitemid 38141634)
-
(2004)
Science
, vol.303
, Issue.5658
, pp. 676-678
-
-
Yildiz, A.1
Tomishige, M.2
Vale, R.D.3
Selvin, P.R.4
-
146
-
-
23744499004
-
Fluorescence imaging with one nanometer accuracy: Application to molecular motors
-
DOI 10.1021/ar040136s
-
Yildiz A and Selvin P R 2005 Fluorescence imaging with one nanometer accuracy: application to molecular motors Acc. Chem. Res. 38 574-82 (Pubitemid 41128410)
-
(2005)
Accounts of Chemical Research
, vol.38
, Issue.7
, pp. 574-582
-
-
Yildiz, A.1
Selvin, P.R.2
-
147
-
-
77957141376
-
Insight into helicase mechanism and function revealed through single-molecule approaches
-
10.1017/S0033583510000107 0033-5835
-
Yodh J G, Schlierf M and Ha T 2010 Insight into helicase mechanism and function revealed through single-molecule approaches Q. Rev. Biophys. 43 185-217
-
(2010)
Q. Rev. Biophys.
, vol.43
, pp. 185-217
-
-
Yodh, J.G.1
Schlierf, M.2
Ha, T.3
-
148
-
-
33748335314
-
Structure-based model of the stepping motor of PcrA helicase
-
DOI 10.1529/biophysj.106.088203
-
Yu J, Ha T and Schulten K 2006 Structure-based model of the stepping motor of PcrA helicase Biophys. J. 91 2097-114 (Pubitemid 44352393)
-
(2006)
Biophysical Journal
, vol.91
, Issue.6
, pp. 2097-2114
-
-
Yu, J.1
Ha, T.2
Schulten, K.3
-
149
-
-
84861846613
-
Nascent RNA structure modulates the transcriptional dynamics of RNA polymerases
-
10.1073/pnas.1205063109 0027-8424
-
Zamft B, Bintu L, Ishibashi T and Bustamante C 2012 Nascent RNA structure modulates the transcriptional dynamics of RNA polymerases Proc. Natl Acad. Sci. USA 109 8948-53
-
(2012)
Proc. Natl Acad. Sci. USA
, vol.109
, pp. 8948-8953
-
-
Zamft, B.1
Bintu, L.2
Ishibashi, T.3
Bustamante, C.4
-
150
-
-
34447266733
-
Directional Loading and Stimulation of PcrA Helicase by the Replication Initiator Protein RepD
-
DOI 10.1016/j.jmb.2007.05.050, PII S0022283607006973
-
Zhang W, Dillingham M S, Thomas C D, Allen S, Roberts C J and Soultanas P 2007 Directional loading and stimulation of PcrA helicase by the replication initiator protein RepD J. Mol. Biol. 371 336-48 (Pubitemid 47048274)
-
(2007)
Journal of Molecular Biology
, vol.371
, Issue.2
, pp. 336-348
-
-
Zhang, W.1
Dillingham, M.S.2
Thomas, C.D.3
Allen, S.4
Roberts, C.J.5
Soultanas, P.6
-
151
-
-
79960804204
-
SSB functions as a sliding platform that migrates on DNA via reptation
-
10.1016/j.cell.2011.06.036 0092-8674
-
Zhou R, Kozlov A, Roy R, Zhang J, Korolev S, Lohman T and Ha T 2011a SSB functions as a sliding platform that migrates on DNA via reptation Cell 146 222-32
-
(2011)
Cell
, vol.146
, pp. 222-232
-
-
Zhou, R.1
Kozlov, A.2
Roy, R.3
Zhang, J.4
Korolev, S.5
Lohman, T.6
Ha, T.7
-
152
-
-
83655164333
-
Detecting intramolecular conformational dynamics of single molecules in short distance range with subnanometer sensitivity
-
10.1021/nl2032876 1530-6984
-
Zhou R, Kunzelmann S, Webb M R and Ha T 2011b Detecting intramolecular conformational dynamics of single molecules in short distance range with subnanometer sensitivity Nano Lett. 11 5482-8
-
(2011)
Nano Lett.
, vol.11
, pp. 5482-5488
-
-
Zhou, R.1
Kunzelmann, S.2
Webb, M.R.3
Ha, T.4
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