SCOPUS 정보 검색 플랫폼

Journal of Chemical Physics

Volumn 134, Issue 6, 2011, Pages

Biomolecules under mechanical stress: A simple mechanism of complex behavior

(2) Suzuki, Yohichi a Dudko, Olga K a

a UNIVERSITY OF CALIFORNIA (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ANALYTICAL SOLUTIONS; APPLIED FORCES; BASIC PROPERTIES; COMPLEX BEHAVIOR; COMPLEX RESPONSE; DIMENSIONAL DYNAMICS; LIGAND-RECEPTOR INTERACTIONS; MECHANICAL STRESS; MICROSCOPIC PROPERTIES; MOLECULAR TRANSITIONS; PULLING FORCE; REACTION COORDINATES; RUPTURE PROCESS; STRETCHING FORCE; TRANSITION STATE; TWO-DIMENSION;

PROTEIN FOLDING; STRESSES;

BIOMOLECULES;

PROTEIN;

ARTICLE; CHEMISTRY; MECHANICAL STRESS; PROTEIN FOLDING;

PROTEIN FOLDING; PROTEINS; STRESS, MECHANICAL;

EID: 79951806203 PISSN: 00219606 EISSN: None Source Type: Journal
DOI: 10.1063/1.3533366 Document Type: Article

Times cited : (36)

References (29)

1
- 3943069115
- Mechanical processes in biochemistry
- DOI 10.1146/annurev.biochem.72.121801.161542
- C. Bustamante, Y. R. Chemla, N. R. Forde, and D. Izhaky, Annu. Rev. Biochem. 73, 705 (2004). 10.1146/annurev.biochem.72.121801.161542 (Pubitemid 39050384)
- (2004) Annual Review of Biochemistry , vol.73 , pp. 705-748
- Bustamante, C.¹ Chemla, Y.R.² Forde, N.R.³ Izhaky, D.⁴

2
- 34347266453
- High-resolution, single-molecule measurements of biomolecular motion
- DOI 10.1146/annurev.biophys.36.101106.101451
- W. J. Greenleaf, M. T. Woodside, and S. M. Block, Annu. Rev. Biophys. Biomol. Struct. 36, 171 (2007). 10.1146/annurev.biophys.36.101106.101451 (Pubitemid 46998115)
- (2007) Annual Review of Biophysics and Biomolecular Structure , vol.36 , pp. 171-190
- Greenleaf, W.J.¹ Woodside, M.T.² Block, S.M.³

3
- 67049115585
- 10.1073/pnas.0904156106
- O. K. Dudko, Proc. Natl. Acad. Sci. U.S.A. 106, 8795 (2009). 10.1073/pnas.0904156106
- (2009) Proc. Natl. Acad. Sci. U.S.A. , vol.106 , pp. 8795
- Dudko, O.K.¹

4
- 34547275473
- H. A. Kramers, Physica 7, 284 (1940).
- (1940) Physica , vol.7 , pp. 284
- Kramers, H.A.¹

5
- 0030987036
- 10.1016/S0006-3495(97)78804-0
- S. Izrailev, S. Stepaniants, M. Balsera, Y. Oono, and K. Schulten, Biophys. J. 72, 1568 (1997). 10.1016/S0006-3495(97)78804-0
- (1997) Biophys. J. , vol.72 , pp. 1568
- Izrailev, S.¹ Stepaniants, S.² Balsera, M.³ Oono, Y.⁴ Schulten, K.⁵

6
- 33645004171
- 10.1103/PhysRevLett.96.108101
- O. K. Dudko, G. Hummer, and A. Szabo, Phys. Rev. Lett. 96, 108101 (2006). 10.1103/PhysRevLett.96.108101
- (2006) Phys. Rev. Lett. , vol.96 , pp. 108101
- Dudko, O.K.¹ Hummer, G.² Szabo, A.³

7
- 84955266913
- 10.1103/PhysRevLett.104.048101
- Y. Suzuki and O. K. Dudko, Phys. Rev. Lett. 104, 048101 (2010). 10.1103/PhysRevLett.104.048101
- (2010) Phys. Rev. Lett. , vol.104 , pp. 048101
- Suzuki, Y.¹ Dudko, O.K.²

8
- 0033515015
- Stretching lattice models of protein folding
- DOI 10.1073/pnas.96.5.2031
- N. D. Socci, J. N. Onuchic, and P. G. Wolynes, Proc. Natl. Acad. Sci. U.S.A. 96, 2031 (1999). 10.1073/pnas.96.5.2031 (Pubitemid 29117862)
- (1999) Proceedings of the National Academy of Sciences of the United States of America , vol.96 , Issue.5 , pp. 2031-2035
- Socci, N.D.¹ Onuchic, J.N.² Wolynes, P.G.³

9
- 33847753469
- Measuring the energy landscape roughness and the transition state location of biomolecules using single molecule mechanical unfolding experiments
- DOI 10.1088/0953-8984/19/11/113101, PII S0953898407754115
- C. Hyeon and D. Thirumalai, J. Phys. Condens. Matter 19, 113101 (2007). 10.1088/0953-8984/19/11/113101 (Pubitemid 46375680)
- (2007) Journal of Physics Condensed Matter , vol.19 , Issue.11 , pp. 113101
- Hyeon, C.¹ Thirumalai, D.²

10
- 33747461393
- DNA overwinds when stretched
- DOI 10.1038/nature04974, PII NATURE04974
- J. Gore, Z. Bryant, M. Nllmann, M. U. Le, N. R. Cozzarelli, and C. Bustamante, Nature (London) 442, 836 (2006). 10.1038/nature04974 (Pubitemid 44258916)
- (2006) Nature , vol.442 , Issue.7104 , pp. 836-839
- Gore, J.¹ Bryant, Z.² Nollmann, M.³ Le, M.U.⁴ Cozzarelli, N.R.⁵ Bustamante, C.⁶

11
- 2942658864
- (W. H. Freeman and Company, New York)
- P. Nelson, Biological Physics: Energy, Information, Life (W. H. Freeman and Company, New York, 2008).
- (2008) Biological Physics: Energy, Information, Life
- Nelson, P.¹

12
- 57349124448
- 10.1073/pnas.0806085105
- O. K. Dudko, G. Hummer, and A. Szabo, Natl. Acad. Sci. U.S.A. 105, 15755 (2008). 10.1073/pnas.0806085105
- (2008) Natl. Acad. Sci. U.S.A. , vol.105 , pp. 15755
- Dudko, O.K.¹ Hummer, G.² Szabo, A.³

13
- 78649569189
- Advances in Chemical Physics, edited by M. Toda, T. Komatsuzaki, T. Konishi, R. S. Berry, and S. A. Rice (Wiley, Hoboken, NJ), Vol. (and references therein)
- Geometrical Structures of Phase Space in Multidimensional Chaos: Applications to Chemical Reaction Dynamics in Complex Systems, Advances in Chemical Physics, edited by, M. Toda, T. Komatsuzaki, T. Konishi, R. S. Berry, and, S. A. Rice, (Wiley, Hoboken, NJ, 2005), Vol. 130A/130B (and references therein).
- (2005) Geometrical Structures of Phase Space in Multidimensional Chaos: Applications to Chemical Reaction Dynamics in Complex Systems , vol.130 AB

14
- 0000782086
- 10.1016/0003-4916(69)90153-5
- J. S. Langer, Ann. Phys. (Leipzig) 54, 258 (1969). 10.1016/0003-4916(69) 90153-5
- (1969) Ann. Phys. (Leipzig) , vol.54 , pp. 258
- Langer, J.S.¹

15
- 36749106393
- 10.1063/1.444804
- S. H. Northrup and J. A. McCammon, J. Chem. Phys. 78, 987 (1983). 10.1063/1.444804
- (1983) J. Chem. Phys. , vol.78 , pp. 987
- Northrup, S.H.¹ McCammon, J.A.²

16
- 0000274772
- 10.1088/0305-4470/25/8/022
- A. M. Berezhkovskii and V. Y. Zitserman, J. Phys. A 25, 2077 (1992). 10.1088/0305-4470/25/8/022
- (1992) J. Phys. A , vol.25 , pp. 2077
- Berezhkovskii, A.M.¹ Zitserman, V.Y.²

17
- 41349113512
- Dynamic response of adhesion complexes: Beyond the single-path picture
- DOI 10.1103/PhysRevE.65.051910, 051910
- D. Bartolo, I. Derenyi, and A. Ajdari, Phys. Rev. E 65, 051910 (2002). 10.1103/PhysRevE.65.051910 (Pubitemid 40606800)
- (2002) Physical Review E - Statistical, Nonlinear, and Soft Matter Physics , vol.65 , Issue.5
- Bartolo, D.¹ Derenyi, I.² Ajdari, A.³

18
- 24144484705
- The two-pathway model for the catch-slip transition in biological adhesion
- DOI 10.1529/biophysj.105.062158
- Y. V. Pereverzev, O. V. Prezhdo, M. Forero, E. V. Sokurenko, and W. E. Thomas, Biophys. J. 89, 1446 (2005). 10.1529/biophysj.105.062158 (Pubitemid 41233504)
- (2005) Biophysical Journal , vol.89 , Issue.3 , pp. 1446-1454
- Pereverzev, Y.V.¹ Prezhdo, O.V.² Forero, M.³ Sokurenko, E.V.⁴ Thomas, W.E.⁵

19
- 44949091394
- 10.1021/jp075955j
- R. B. Best, E. Paci, G. Hummer, and O. K. Dudko, J. Phys. Chem. B 112, 5968 (2008). 10.1021/jp075955j
- (2008) J. Phys. Chem. B , vol.112 , pp. 5968
- Best, R.B.¹ Paci, E.² Hummer, G.³ Dudko, O.K.⁴

20
- 3843151375
- Mechanical switching and coupling between two dissociation pathways in a P-selectin adhesion bond
- DOI 10.1073/pnas.0401870101
- E. Evans, A. Leung, V. Heinrich, and C. Zhu, Proc. Natl. Acad. Sci. U.S.A. 101, 11281 (2004). 10.1073/pnas.0401870101 (Pubitemid 39038338)
- (2004) Proceedings of the National Academy of Sciences of the United States of America , vol.101 , Issue.31 , pp. 11281-11286
- Evans, E.¹ Leung, A.² Heinrich, V.³ Zhu, C.⁴

21
- 13844309581
- Dynamics of unbinding of cell adhesion molecules: Transition from catch to slip bonds
- DOI 10.1073/pnas.0406938102
- V. Barsegov and D. Thirumalai, Proc. Natl. Acad. Sci. U.S.A. 102, 1835 (2005). 10.1073/pnas.0406938102 (Pubitemid 40261972)
- (2005) Proceedings of the National Academy of Sciences of the United States of America , vol.102 , Issue.6 , pp. 1835-1839
- Barsegov, V.¹ Thirumalai, D.²

22
- 77950415518
- 10.1103/PhysRevE.81.031923
- Z. T. Yew, M. Schlierf, M. Rief, and E. Paci, Phys. Rev. E 81, 031923 (2010). 10.1103/PhysRevE.81.031923
- (2010) Phys. Rev. e , vol.81 , pp. 031923
- Yew, Z.T.¹ Schlierf, M.² Rief, M.³ Paci, E.⁴

23
- 0033531109
- Energy landscapes of receptor-ligand bonds explored with dynamic force spectroscopy
- DOI 10.1038/16219
- R. Merkel, P. Nassoy, A. Leung, K. Ritchie, and E. Evans, Nature (London) 397, 50 (1999). 10.1038/16219 (Pubitemid 29038244)
- (1999) Nature , vol.397 , Issue.6714 , pp. 50-53
- Merkel, R.¹ Nassoy, P.² Leung, A.³ Ritchie, K.⁴ Evans, E.⁵

24
- 22444436625
- Spectrin R16: Broad energy barrier or sequential transition states?
- DOI 10.1110/ps.051377105
- K. A. Scott and J. Clarke, Protein Sci. 14, 1617 (2005). 10.1110/ps.051377105 (Pubitemid 41007923)
- (2005) Protein Science , vol.14 , Issue.6 , pp. 1617-1629
- Scott, K.A.¹ Clarke, J.²

25
- 0037653696
- Direct observation of catch bonds involving cell-adhesion molecules
- DOI 10.1038/nature01605
- B. T. Marshall, M. Long, J. W. Piper, T. Yago, R. P. McEver, and C. Zhu, Nature (London) 423, 190 (2003) 10.1038/nature01605 (Pubitemid 36569544)
- (2003) Nature , vol.423 , Issue.6936 , pp. 190-193
- Marshall, B.T.¹ Long, M.² Piper, J.W.³ Yago, T.⁴ McEver, R.P.⁵ Zhu, C.⁶

26
- 69449083856
- 10.1073/pnas.0902312106
- M. Bertz, M. Wilmanns, and M. Rief, Proc. Natl. Acad. Sci. U.S.A. 106, 13307 (2009). 10.1073/pnas.0902312106
- (2009) Proc. Natl. Acad. Sci. U.S.A. , vol.106 , pp. 13307
- Bertz, M.¹ Wilmanns, M.² Rief, M.³

27
- 0042508740
- The mechanical stability of ubiquitin is linkage dependent
- DOI 10.1038/nsb965
- M. Carrion-Vazquez, H. Li, H. Lu, P. E. Marszalek, A. F. Oberhauser, and J. M. Fernandez, Nat. Struct. Biol. 10, 738 (2003). 10.1038/nsb965 (Pubitemid 37052413)
- (2003) Nature Structural Biology , vol.10 , Issue.9 , pp. 738-743
- Carrion-Vazquez, M.¹ Li, H.² Lu, H.³ Marszalek, P.E.⁴ Oberhauser, A.F.⁵ Fernandez, J.M.⁶

28
- 0042508741
- Pulling geometry defines the mechanical resistance of a β-sheet protein
- DOI 10.1038/nsb968
- D. J. Brockwell, E. Paci, R. C. Zinober, G. S. Beddard, P. D. Olmsted, D. A. Smith, R. N. Perham, and S. E. Radford, Nat. Struct. Biol. 10, 731 (2003). 10.1038/nsb968 (Pubitemid 37052412)
- (2003) Nature Structural Biology , vol.10 , Issue.9 , pp. 731-737
- Brockwell, D.J.¹ Paci, E.² Zinober, R.C.³ Beddard, G.S.⁴ Olmsted, P.D.⁵ Smith, D.A.⁶ Perham, R.N.⁷ Radford, S.E.⁸

29
- 85205876776
- (Oxford Graduate Texts, Oxford University Press, New York)
- A. Nitzan, Chemical Dynamics in Condensed Phases: Relaxation, Transfer, and Reactions in Condensed Molecular Systems (Oxford Graduate Texts, Oxford University Press, New York, 2006).
- (2006) Chemical Dynamics in Condensed Phases: Relaxation, Transfer, and Reactions in Condensed Molecular Systems
- Nitzan, A.¹

* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.